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Center for Computational Systems Medicine
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Gene summary

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Gene structures and expression levels

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Exon skipping events with PSIs in TCGA

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Exon skipping events with PSIs in GTEx

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Open reading frame (ORF) annotation in the exon skipping event

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Exon skipping events in the canonical protein sequence

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SNVs in the skipped exons with depth of coverage

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Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon

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Related drugs with this gene

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Related diseases with this gene

Gene summary for MKI67

check button Gene summary
Gene informationGene symbol

MKI67

Gene ID

4288

Gene namemarker of proliferation Ki-67
SynonymsKIA|MIB-|MIB-1|PPP1R105
Cytomap

10q26.2

Type of geneprotein-coding
Descriptionproliferation marker protein Ki-67antigen Ki67antigen identified by monoclonal antibody Ki-67proliferation-related Ki-67 antigenprotein phosphatase 1, regulatory subunit 105
Modification date20180527
UniProtAcc

P46013

ContextPubMed: MKI67 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract]
- Title (PMID)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
MKI67

GO:0007088

regulation of mitotic nuclear division

27362226

MKI67

GO:0051983

regulation of chromosome segregation

27362226


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Exon skipping events across known transcript of Ensembl for MKI67 from UCSC genome browser

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

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Gene isoform structures and expression levels for MKI67

check button Expression levels of gene isoforms across TCGA.
gencode gene structure

check button Expression levels of gene isoforms across GTEx.
gencode gene structure


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Exon skipping events with PSIs in TCGA for MKI67

check button Information of exkip skipping event in TCGA.
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_5493510129911690:129911866:129913191:129914271:129914754:129914800129913191:129914271ENSG00000148773.8ENST00000368654.3

check button PSI values of skipped exons in TCGA.
psi tcga

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Exon skipping events with PSIs in GTEx for MKI67

check button Information of exkip skipping event in GTEx
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_5493510129911690:129911866:129913191:129914271:129914754:129914800129913191:129914271ENSG00000148773.8ENST00000368654.3

check button PSI values of skipped exons in GTEx.
psi gtex

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for MKI67

check button Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST00000368654129913191129914271In-frame

check button Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST00000368654129913191129914271In-frame

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Infer the effects of exon skipping event on protein functional features for MKI67

check button Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.
prot feature distribution

check button Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000003686541269532561299131911299142717771856133493

check button Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000003686541269532561299131911299142717771856133493

check button Lost protein functional features of individual exon skipping events in TCGA.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
P46013133493136495Alternative sequenceID=VSP_004298;Note=In isoform Short. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:8227122;Dbxref=PMID:8227122
P4601313349313256ChainID=PRO_0000084301;Note=Proliferation marker protein Ki-67
P46013133493245245Cross-linkNote=Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2);Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:28112733;Dbxref=PMID:28112733
P46013133493166166Modified residueNote=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:E9PVX6
P46013133493264264Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:18669648;Dbxref=PMID:18669648
P46013133493296296Modified residueNote=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:E9PVX6
P46013133493308308Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:18691976,ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:21406692,ECO:0000244|PubMed:23186163;Dbxref=PMID:1
P46013133493328328Modified residueNote=Phosphothreonine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:16964243,ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:23186163;Dbxref=PMID:16964243,PMID:18669648,PMID:23186163
P46013133493347347Modified residueNote=Phosphothreonine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:23186163;Dbxref=PMID:18669648,PMID:23186163
P46013133493352352Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:21406692;Dbxref=PMID:21406692
P46013133493357357Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:16964243,ECO:0000244|PubMed:18220336,ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:18691976,ECO:0000244|PubMe
P46013133493374374Modified residueNote=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:E9PVX6
P46013133493401401Modified residueNote=Phosphothreonine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:18669648;Dbxref=PMID:18669648
P46013133493411411Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:23186163;Dbxref=PMID:23186163
P46013133493238238Natural variantID=VAR_029056;Note=W->R;Dbxref=dbSNP:rs7095325


check button Lost protein functional features of individual exon skipping events in GTEx.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
P46013133493136495Alternative sequenceID=VSP_004298;Note=In isoform Short. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:8227122;Dbxref=PMID:8227122
P4601313349313256ChainID=PRO_0000084301;Note=Proliferation marker protein Ki-67
P46013133493245245Cross-linkNote=Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2);Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:28112733;Dbxref=PMID:28112733
P46013133493166166Modified residueNote=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:E9PVX6
P46013133493264264Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:18669648;Dbxref=PMID:18669648
P46013133493296296Modified residueNote=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:E9PVX6
P46013133493308308Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:18691976,ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:21406692,ECO:0000244|PubMed:23186163;Dbxref=PMID:1
P46013133493328328Modified residueNote=Phosphothreonine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:16964243,ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:23186163;Dbxref=PMID:16964243,PMID:18669648,PMID:23186163
P46013133493347347Modified residueNote=Phosphothreonine;Ontology_term=ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:23186163;Dbxref=PMID:18669648,PMID:23186163
P46013133493352352Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:21406692;Dbxref=PMID:21406692
P46013133493357357Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244,ECO:0000244;evidence=ECO:0000244|PubMed:16964243,ECO:0000244|PubMed:18220336,ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:18691976,ECO:0000244|PubMe
P46013133493374374Modified residueNote=Phosphoserine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:E9PVX6
P46013133493401401Modified residueNote=Phosphothreonine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:18669648;Dbxref=PMID:18669648
P46013133493411411Modified residueNote=Phosphoserine;Ontology_term=ECO:0000244;evidence=ECO:0000244|PubMed:23186163;Dbxref=PMID:23186163
P46013133493238238Natural variantID=VAR_029056;Note=W->R;Dbxref=dbSNP:rs7095325


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SNVs in the skipped exons for MKI67

check button - Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.
lollipop

check button - Differential PSIs between mutated versus non-mutated samples.
MKI67_ESCA_exon_skip_54935_psi_boxplot.png
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MKI67_LUAD_exon_skip_54935_psi_boxplot.png
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MKI67_STAD_exon_skip_54935_psi_boxplot.png
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check button - Non-synonymous mutations located in the skipped exons in TCGA.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
STADTCGA-CG-5721-01exon_skip_54935
129913192129914271129913250129913250Frame_Shift_DelC-p.C475fs
LIHCTCGA-G3-A3CJ-01exon_skip_54935
129913192129914271129913269129913269Frame_Shift_DelC-p.G468fs
LIHCTCGA-DD-A39Y-01exon_skip_54935
129913192129914271129913274129913274Frame_Shift_DelT-p.K466fs
LIHCTCGA-DD-A3A0-01exon_skip_54935
129913192129914271129913338129913338Frame_Shift_DelA-p.L445fs
LIHCTCGA-DD-A39Y-01exon_skip_54935
129913192129914271129913422129913422Frame_Shift_DelT-p.N417fs
LIHCTCGA-DD-A1EG-01exon_skip_54935
129913192129914271129913486129913486Frame_Shift_DelA-p.S396fs
COADTCGA-A6-6654-01exon_skip_54935
129913192129914271129913718129913718Frame_Shift_DelC-p.K319fs
ESCATCGA-JY-A939-01exon_skip_54935
129913192129914271129913974129913974Frame_Shift_DelT-p.N233fs
KIRCTCGA-B2-3924-01exon_skip_54935
129913192129914271129913974129913974Frame_Shift_DelT-p.N233fs
LUADTCGA-95-7567-01exon_skip_54935
129913192129914271129913973129913974Frame_Shift_Ins-Tp.N233fs
LUADTCGA-95-7567-01exon_skip_54935
129913192129914271129913973129913974Frame_Shift_Ins-Tp.R233fs
UCECTCGA-B5-A0K9-01exon_skip_54935
129913192129914271129913973129913974Frame_Shift_Ins-Tp.N233fs
UCECTCGA-D1-A103-01exon_skip_54935
129913192129914271129913402129913402Nonsense_MutationCAp.G424*
STADTCGA-VQ-AA6I-01exon_skip_54935
129913192129914271129913474129913474Nonsense_MutationGAp.R400*
STADTCGA-VQ-AA6I-01exon_skip_54935
129913192129914271129913474129913474Nonsense_MutationGAp.R400X
UCECTCGA-BS-A0TC-01exon_skip_54935
129913192129914271129913909129913909Nonsense_MutationCAp.E255*
BLCATCGA-XF-AAMG-01exon_skip_54935
129913192129914271129913933129913933Nonsense_MutationCAp.E247*
LUADTCGA-75-5126-01exon_skip_54935
129913192129914271129913972129913972Nonsense_MutationCAp.E234*
BLCATCGA-FD-A6TC-01exon_skip_54935
129913192129914271129914118129914118Nonsense_MutationGCp.S185*

check button - Depth of coverage in the three exons composing exon skipping event
Depth of coverage in three exonsMutation description
MKI67_129911690_129911866_129913191_129914271_129914754_129914800_TCGA-A6-6654-01Sample: TCGA-A6-6654-01
Cancer type: COAD
ESID: exon_skip_54935
Skipped exon start: 129913192
Skipped exon end: 129914271
Mutation start: 129913718
Mutation end: 129913718
Mutation type: Frame_Shift_Del
Reference seq: C
Mutation seq: -
AAchange: p.K319fs
exon_skip_54935_COAD_TCGA-A6-6654-01.png
boxplot
MKI67_129911690_129911866_129913191_129914271_129914754_129914800_TCGA-JY-A939-01Sample: TCGA-JY-A939-01
Cancer type: ESCA
ESID: exon_skip_54935
Skipped exon start: 129913192
Skipped exon end: 129914271
Mutation start: 129913974
Mutation end: 129913974
Mutation type: Frame_Shift_Del
Reference seq: T
Mutation seq: -
AAchange: p.N233fs
exon_skip_109771_ESCA_TCGA-JY-A939-01.png
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exon_skip_148331_ESCA_TCGA-JY-A939-01.png
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exon_skip_54935_ESCA_TCGA-JY-A939-01.png
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MKI67_129911690_129911866_129913191_129914271_129914754_129914800_TCGA-95-7567-01Sample: TCGA-95-7567-01
Cancer type: LUAD
ESID: exon_skip_54935
Skipped exon start: 129913192
Skipped exon end: 129914271
Mutation start: 129913973
Mutation end: 129913974
Mutation type: Frame_Shift_Ins
Reference seq: -
Mutation seq: T
AAchange: p.R233fs
MKI67_129911690_129911866_129913191_129914271_129914754_129914800_TCGA-95-7567-01Sample: TCGA-95-7567-01
Cancer type: LUAD
ESID: exon_skip_54935
Skipped exon start: 129913192
Skipped exon end: 129914271
Mutation start: 129913973
Mutation end: 129913974
Mutation type: Frame_Shift_Ins
Reference seq: -
Mutation seq: T
AAchange: p.N233fs
exon_skip_294084_LUAD_TCGA-95-7567-01.png
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exon_skip_344952_LUAD_TCGA-95-7567-01.png
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exon_skip_48473_LUAD_TCGA-95-7567-01.png
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exon_skip_54935_LUAD_TCGA-95-7567-01.png
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MKI67_129911690_129911866_129913191_129914271_129914754_129914800_TCGA-CG-5721-01Sample: TCGA-CG-5721-01
Cancer type: STAD
ESID: exon_skip_54935
Skipped exon start: 129913192
Skipped exon end: 129914271
Mutation start: 129913250
Mutation end: 129913250
Mutation type: Frame_Shift_Del
Reference seq: C
Mutation seq: -
AAchange: p.C475fs
exon_skip_107493_STAD_TCGA-CG-5721-01.png
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exon_skip_107867_STAD_TCGA-CG-5721-01.png
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exon_skip_123973_STAD_TCGA-CG-5721-01.png
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exon_skip_124728_STAD_TCGA-CG-5721-01.png
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exon_skip_20583_STAD_TCGA-CG-5721-01.png
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exon_skip_284550_STAD_TCGA-CG-5721-01.png
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exon_skip_287086_STAD_TCGA-CG-5721-01.png
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exon_skip_287092_STAD_TCGA-CG-5721-01.png
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exon_skip_328008_STAD_TCGA-CG-5721-01.png
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exon_skip_347989_STAD_TCGA-CG-5721-01.png
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exon_skip_360357_STAD_TCGA-CG-5721-01.png
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exon_skip_360359_STAD_TCGA-CG-5721-01.png
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exon_skip_361242_STAD_TCGA-CG-5721-01.png
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exon_skip_363554_STAD_TCGA-CG-5721-01.png
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exon_skip_370065_STAD_TCGA-CG-5721-01.png
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exon_skip_377240_STAD_TCGA-CG-5721-01.png
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exon_skip_378735_STAD_TCGA-CG-5721-01.png
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exon_skip_41850_STAD_TCGA-CG-5721-01.png
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exon_skip_425098_STAD_TCGA-CG-5721-01.png
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exon_skip_443908_STAD_TCGA-CG-5721-01.png
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exon_skip_449553_STAD_TCGA-CG-5721-01.png
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exon_skip_452918_STAD_TCGA-CG-5721-01.png
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exon_skip_454809_STAD_TCGA-CG-5721-01.png
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exon_skip_462689_STAD_TCGA-CG-5721-01.png
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exon_skip_482821_STAD_TCGA-CG-5721-01.png
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exon_skip_482822_STAD_TCGA-CG-5721-01.png
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exon_skip_487878_STAD_TCGA-CG-5721-01.png
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exon_skip_502793_STAD_TCGA-CG-5721-01.png
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exon_skip_508189_STAD_TCGA-CG-5721-01.png
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exon_skip_516607_STAD_TCGA-CG-5721-01.png
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exon_skip_54935_STAD_TCGA-CG-5721-01.png
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exon_skip_96977_STAD_TCGA-CG-5721-01.png
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MKI67_129911690_129911866_129913191_129914271_129914754_129914800_TCGA-B5-A0K9-01Sample: TCGA-B5-A0K9-01
Cancer type: UCEC
ESID: exon_skip_54935
Skipped exon start: 129913192
Skipped exon end: 129914271
Mutation start: 129913973
Mutation end: 129913974
Mutation type: Frame_Shift_Ins
Reference seq: -
Mutation seq: T
AAchange: p.N233fs
exon_skip_101656_UCEC_TCGA-B5-A0K9-01.png
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exon_skip_25134_UCEC_TCGA-B5-A0K9-01.png
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exon_skip_295913_UCEC_TCGA-B5-A0K9-01.png
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exon_skip_301201_UCEC_TCGA-B5-A0K9-01.png
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exon_skip_319638_UCEC_TCGA-B5-A0K9-01.png
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exon_skip_321422_UCEC_TCGA-B5-A0K9-01.png
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exon_skip_321423_UCEC_TCGA-B5-A0K9-01.png
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exon_skip_321427_UCEC_TCGA-B5-A0K9-01.png
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exon_skip_32745_UCEC_TCGA-B5-A0K9-01.png
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exon_skip_382168_UCEC_TCGA-B5-A0K9-01.png
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exon_skip_420494_UCEC_TCGA-B5-A0K9-01.png
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exon_skip_421737_UCEC_TCGA-B5-A0K9-01.png
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exon_skip_438393_UCEC_TCGA-B5-A0K9-01.png
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exon_skip_468121_UCEC_TCGA-B5-A0K9-01.png
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exon_skip_54935_UCEC_TCGA-B5-A0K9-01.png
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check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
RCCFG2_KIDNEY129913192129914271129913205129913206Frame_Shift_DelAA-p.F489fs
HEC59_ENDOMETRIUM129913192129914271129913439129913440Frame_Shift_DelAG-p.S411fs
SNUC4_LARGE_INTESTINE129913192129914271129913973129913974Frame_Shift_Ins-Tp.N233fs
VMRCRCW_KIDNEY129913192129914271129913973129913974Frame_Shift_Ins-Tp.N233fs
MLMA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE129913192129914271129913226129913231In_Frame_DelACTAAG-p.LS481del
DJM1_SKIN129913192129914271129913218129913218Missense_MutationTCp.D485G
IGROV1_OVARY129913192129914271129913282129913282Missense_MutationGTp.P464T
HEC59_ENDOMETRIUM129913192129914271129913290129913290Missense_MutationATp.L461H
JHUEM7_ENDOMETRIUM129913192129914271129913423129913423Missense_MutationTGp.N417H
CHL1_SKIN129913192129914271129913444129913444Missense_MutationCTp.D410N
HMCB_SKIN129913192129914271129913444129913444Missense_MutationCTp.D410N
HT115_LARGE_INTESTINE129913192129914271129913473129913473Missense_MutationCTp.R400Q
NCIH720_LUNG129913192129914271129913516129913516Missense_MutationCTp.G386S
HT115_LARGE_INTESTINE129913192129914271129913606129913606Missense_MutationTGp.N356H
HS746T_STOMACH129913192129914271129914032129914032Missense_MutationGAp.R214C
COLO783_SKIN129913192129914271129914070129914070Missense_MutationCAp.G201V
MDAMB361_BREAST129913192129914271129914094129914094Missense_MutationCTp.R193K
PANC0403_PANCREAS129913192129914271129914178129914178Missense_MutationTCp.D165G
MOLT4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE129913192129914271129913474129913474Nonsense_MutationGAp.R400*
HEC251_ENDOMETRIUM129913192129914271129913936129913936Nonsense_MutationTAp.K246*

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for MKI67

check button sQTL information located at the skipped exons.
Exon skip IDChromosomeThree exonsSkippped exonENSTCancer typeSNP idLocationDNA change (ref/var)P-value

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for MKI67


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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for MKI67


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RelatedDrugs for MKI67

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for MKI67

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource
MKI67C1458155Mammary Neoplasms3CTD_human
MKI67C0001418Adenocarcinoma1CTD_human
MKI67C0009375Colonic Neoplasms1CTD_human
MKI67C0009404Colorectal Neoplasms1CTD_human
MKI67C0019189Hepatitis, Chronic1CTD_human
MKI67C0023893Liver Cirrhosis, Experimental1CTD_human
MKI67C0031117Peripheral Neuropathy1CTD_human
MKI67C0033860Psoriasis1CTD_human
MKI67C0206637Chondrosarcoma, Mesenchymal1CTD_human
MKI67C0919267ovarian neoplasm1CTD_human
MKI67C1876165Copper-Overload Cirrhosis1CTD_human