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	Gene summary
	Gene structures and expression levels
	Exon skipping events with PSIs in TCGA
	Exon skipping events with PSIs in GTEx
	Open reading frame (ORF) annotation in the exon skipping event
	Exon skipping events in the canonical protein sequence
	SNVs in the skipped exons with depth of coverage
	Splicing Quantitative Trait Loci (sQTLs) in the skipped exons
	Splicing Quantitative Trait Methylation (sQTM) in the skipped exon
	Related drugs with this gene
	Related diseases with this gene

Gene summary for TNC

Gene summary

Gene information	Gene symbol	TNC
	Gene ID	3371
	Gene name	tenascin C
	Synonyms	150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C
	Cytomap	9q33.1
	Type of gene	protein-coding
	Description	tenascinGP 150-225cytotactindeafness, autosomal dominant 56glioma-associated-extracellular matrix antigenhexabrachion (tenascin)myotendinous antigenneuronectintenascin-C additional domain 1tenascin-C isoform 14/AD1/16
	Modification date	20180523
	UniProtAcc	P24821
	Context	PubMed: TNC [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract] - Title (PMID)

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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Exon skipping events across known transcript of Ensembl for TNC from UCSC genome browser

Skipped exons in TCGA and GTEx based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

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Gene isoform structures and expression levels for TNC

Expression levels of gene isoforms across TCGA.

Expression levels of gene isoforms across GTEx.

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Exon skipping events with PSIs in TCGA for TNC

Information of exkip skipping event in TCGA.

Exon skip ID	chr	Exons involved in exon skipping	Skipped exon	ENSG	ENSTs
exon_skip_506298	9	117783435:117783546:117786251:117786415:117788812:117788974	117786251:117786415	ENSG00000041982.10	ENST00000542877.1,ENST00000535648.1,ENST00000350763.4,ENST00000423613.2,ENST00000340094.3,ENST00000345230.3,ENST00000346706.3,ENST00000341037.4,ENST00000537320.1
exon_skip_506301	9	117786251:117786415:117788812:117788974:117791638:117791735	117788812:117788974	ENSG00000041982.10	ENST00000542877.1,ENST00000535648.1,ENST00000350763.4,ENST00000423613.2,ENST00000340094.3,ENST00000345230.3,ENST00000346706.3,ENST00000341037.4,ENST00000537320.1
exon_skip_506303	9	117797482:117797613:117798376:117798520:117800539:117800659	117798376:117798520	ENSG00000041982.10	ENST00000542877.1,ENST00000535648.1,ENST00000350763.4,ENST00000423613.2,ENST00000340094.3,ENST00000345230.3,ENST00000346706.3,ENST00000341037.4,ENST00000537320.1,ENST00000544972.1
exon_skip_506304	9	117798463:117798520:117800539:117800659:117803219:117803363	117800539:117800659	ENSG00000041982.10	ENST00000542877.1,ENST00000535648.1,ENST00000350763.4,ENST00000423613.2,ENST00000476680.1,ENST00000340094.3,ENST00000345230.3,ENST00000346706.3,ENST00000341037.4,ENST00000498724.1,ENST00000537320.1,ENST00000544972.1
exon_skip_506313	9	117804497:117804620:117808688:117808961:117810538:117810811	117808688:117808961	ENSG00000041982.10	ENST00000350763.4,ENST00000340094.3
exon_skip_506314	9	117804497:117804620:117808688:117808961:117815018:117815294	117808688:117808961	ENSG00000041982.10	ENST00000542877.1
exon_skip_506315	9	117804497:117804620:117808688:117808961:117819431:117819580	117808688:117808961	ENSG00000041982.10	ENST00000535648.1,ENST00000341037.4,ENST00000544972.1
exon_skip_506320	9	117804497:117804620:117808688:117808961:117835881:117835920	117808688:117808961	ENSG00000041982.10	ENST00000346706.3
exon_skip_506343	9	117804497:117804620:117822008:117822281:117825195:117825447	117822008:117822281	ENSG00000041982.10	ENST00000423613.2
exon_skip_506375	9	117808745:117808961:117810538:117810811:117819431:117819580	117810538:117810811	ENSG00000041982.10	ENST00000350763.4,ENST00000340094.3
exon_skip_506384	9	117808745:117808961:117815018:117815294:117819431:117819580	117815018:117815294	ENSG00000041982.10	ENST00000542877.1
exon_skip_506390	9	117808745:117808961:117819431:117819704:117822008:117822090	117819431:117819704	ENSG00000041982.10	ENST00000341037.4
exon_skip_506393	9	117808745:117808961:117819431:117819704:117826925:117827191	117819431:117819704	ENSG00000041982.10	ENST00000544972.1
exon_skip_506394	9	117808778:117808961:117819431:117819704:117835881:117835920	117819431:117819704	ENSG00000041982.10	ENST00000535648.1
exon_skip_506408	9	117810538:117810811:117815018:117815294:117817754:117818027	117815018:117815294	ENSG00000041982.10	ENST00000481475.1
exon_skip_506415	9	117810538:117810811:117819431:117819704:117822008:117822281	117819431:117819704	ENSG00000041982.10	ENST00000350763.4
exon_skip_506419	9	117810538:117810811:117819431:117819704:117835881:117835920	117819431:117819704	ENSG00000041982.10	ENST00000340094.3
exon_skip_506432	9	117819431:117819704:117822008:117822281:117825195:117825447	117822008:117822281	ENSG00000041982.10	ENST00000350763.4
exon_skip_506433	9	117819431:117819704:117822008:117822281:117826074:117826240	117822008:117822281	ENSG00000041982.10	ENST00000341037.4
exon_skip_506450	9	117822133:117822281:117825195:117825468:117826074:117826240	117825195:117825468	ENSG00000041982.10	ENST00000350763.4,ENST00000423613.2
exon_skip_506455	9	117822133:117822281:117826074:117826347:117826925:117827191	117826074:117826347	ENSG00000041982.10	ENST00000341037.4
exon_skip_506466	9	117826074:117826347:117826925:117827198:117835881:117835920	117826925:117827198	ENSG00000041982.10	ENST00000350763.4,ENST00000423613.2,ENST00000341037.4
exon_skip_506467	9	117838668:117838854:117840221:117840491:117844050:117844207	117840221:117840491	ENSG00000041982.10	ENST00000542877.1,ENST00000535648.1,ENST00000350763.4,ENST00000423613.2,ENST00000340094.3,ENST00000345230.3,ENST00000346706.3,ENST00000341037.4,ENST00000537320.1
exon_skip_506468	9	117844970:117845086:117846487:117846751:117848142:117849552	117846487:117846751	ENSG00000041982.10	ENST00000542877.1,ENST00000535648.1,ENST00000350763.4,ENST00000423613.2,ENST00000340094.3,ENST00000345230.3,ENST00000346706.3,ENST00000341037.4,ENST00000537320.1
exon_skip_506470	9	117848142:117849552:117852840:117853433:117880260:117880478	117852840:117853433	ENSG00000041982.10	ENST00000535648.1,ENST00000350763.4,ENST00000345230.3,ENST00000346706.3
exon_skip_506475	9	117853021:117853433:117877281:117877385:117880260:117880478	117877281:117877385	ENSG00000041982.10	ENST00000534839.1

PSI values of skipped exons in TCGA.

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Exon skipping events with PSIs in GTEx for TNC

Information of exkip skipping event in GTEx

Exon skip ID	chr	Exons involved in exon skipping	Skipped exon	ENSG	ENSTs
exon_skip_506298	9	117783435:117783546:117786251:117786415:117788812:117788974	117786251:117786415	ENSG00000041982.10	ENST00000340094.3,ENST00000535648.1,ENST00000346706.3,ENST00000345230.3,ENST00000350763.4,ENST00000341037.4,ENST00000423613.2,ENST00000537320.1,ENST00000542877.1
exon_skip_506301	9	117786251:117786415:117788812:117788974:117791638:117791735	117788812:117788974	ENSG00000041982.10	ENST00000340094.3,ENST00000535648.1,ENST00000346706.3,ENST00000345230.3,ENST00000350763.4,ENST00000341037.4,ENST00000423613.2,ENST00000537320.1,ENST00000542877.1
exon_skip_506303	9	117797482:117797613:117798376:117798520:117800539:117800659	117798376:117798520	ENSG00000041982.10	ENST00000340094.3,ENST00000535648.1,ENST00000346706.3,ENST00000345230.3,ENST00000350763.4,ENST00000341037.4,ENST00000423613.2,ENST00000537320.1,ENST00000542877.1,ENST00000544972.1
exon_skip_506304	9	117798463:117798520:117800539:117800659:117803219:117803363	117800539:117800659	ENSG00000041982.10	ENST00000340094.3,ENST00000535648.1,ENST00000346706.3,ENST00000345230.3,ENST00000350763.4,ENST00000341037.4,ENST00000423613.2,ENST00000537320.1,ENST00000542877.1,ENST00000544972.1,ENST00000498724.1,ENST00000476680.1
exon_skip_506313	9	117804497:117804620:117808688:117808961:117810538:117810811	117808688:117808961	ENSG00000041982.10	ENST00000340094.3,ENST00000350763.4
exon_skip_506314	9	117804497:117804620:117808688:117808961:117815018:117815294	117808688:117808961	ENSG00000041982.10	ENST00000542877.1
exon_skip_506315	9	117804497:117804620:117808688:117808961:117819431:117819580	117808688:117808961	ENSG00000041982.10	ENST00000535648.1,ENST00000341037.4,ENST00000544972.1
exon_skip_506320	9	117804497:117804620:117808688:117808961:117835881:117835920	117808688:117808961	ENSG00000041982.10	ENST00000346706.3
exon_skip_506343	9	117804497:117804620:117822008:117822281:117825195:117825447	117822008:117822281	ENSG00000041982.10	ENST00000423613.2
exon_skip_506375	9	117808745:117808961:117810538:117810811:117819431:117819580	117810538:117810811	ENSG00000041982.10	ENST00000340094.3,ENST00000350763.4
exon_skip_506384	9	117808745:117808961:117815018:117815294:117819431:117819580	117815018:117815294	ENSG00000041982.10	ENST00000542877.1
exon_skip_506390	9	117808745:117808961:117819431:117819704:117822008:117822090	117819431:117819704	ENSG00000041982.10	ENST00000341037.4
exon_skip_506393	9	117808745:117808961:117819431:117819704:117826925:117827191	117819431:117819704	ENSG00000041982.10	ENST00000544972.1
exon_skip_506394	9	117808778:117808961:117819431:117819704:117835881:117835920	117819431:117819704	ENSG00000041982.10	ENST00000535648.1
exon_skip_506408	9	117810538:117810811:117815018:117815294:117817754:117818027	117815018:117815294	ENSG00000041982.10	ENST00000481475.1
exon_skip_506415	9	117810538:117810811:117819431:117819704:117822008:117822281	117819431:117819704	ENSG00000041982.10	ENST00000350763.4
exon_skip_506419	9	117810538:117810811:117819431:117819704:117835881:117835920	117819431:117819704	ENSG00000041982.10	ENST00000340094.3
exon_skip_506432	9	117819431:117819704:117822008:117822281:117825195:117825447	117822008:117822281	ENSG00000041982.10	ENST00000350763.4
exon_skip_506433	9	117819431:117819704:117822008:117822281:117826074:117826240	117822008:117822281	ENSG00000041982.10	ENST00000341037.4
exon_skip_506450	9	117822133:117822281:117825195:117825468:117826074:117826240	117825195:117825468	ENSG00000041982.10	ENST00000350763.4,ENST00000423613.2
exon_skip_506455	9	117822133:117822281:117826074:117826347:117826925:117827191	117826074:117826347	ENSG00000041982.10	ENST00000341037.4
exon_skip_506466	9	117826074:117826347:117826925:117827198:117835881:117835920	117826925:117827198	ENSG00000041982.10	ENST00000350763.4,ENST00000341037.4,ENST00000423613.2
exon_skip_506467	9	117838668:117838854:117840221:117840491:117844050:117844207	117840221:117840491	ENSG00000041982.10	ENST00000340094.3,ENST00000535648.1,ENST00000346706.3,ENST00000345230.3,ENST00000350763.4,ENST00000341037.4,ENST00000423613.2,ENST00000537320.1,ENST00000542877.1
exon_skip_506468	9	117844970:117845086:117846487:117846751:117848142:117849552	117846487:117846751	ENSG00000041982.10	ENST00000340094.3,ENST00000535648.1,ENST00000346706.3,ENST00000345230.3,ENST00000350763.4,ENST00000341037.4,ENST00000423613.2,ENST00000537320.1,ENST00000542877.1
exon_skip_506470	9	117848142:117849552:117852840:117853433:117880260:117880478	117852840:117853433	ENSG00000041982.10	ENST00000535648.1,ENST00000346706.3,ENST00000345230.3,ENST00000350763.4
exon_skip_506475	9	117853021:117853433:117877281:117877385:117880260:117880478	117877281:117877385	ENSG00000041982.10	ENST00000534839.1

PSI values of skipped exons in GTEx.

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for TNC

Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.

ENST	Start of skipped exon	End of skipped exon	ORF
ENST00000350763	117852840	117853433	3UTR-3CDS
ENST00000350763	117786251	117786415	Frame-shift
ENST00000350763	117788812	117788974	In-frame
ENST00000350763	117798376	117798520	In-frame
ENST00000350763	117800539	117800659	In-frame
ENST00000350763	117808688	117808961	In-frame
ENST00000350763	117810538	117810811	In-frame
ENST00000350763	117819431	117819704	In-frame
ENST00000350763	117822008	117822281	In-frame
ENST00000350763	117825195	117825468	In-frame
ENST00000350763	117826925	117827198	In-frame
ENST00000350763	117840221	117840491	In-frame
ENST00000350763	117846487	117846751	In-frame

Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.

ENST	Start of skipped exon	End of skipped exon	ORF
ENST00000350763	117852840	117853433	3UTR-3CDS
ENST00000350763	117786251	117786415	Frame-shift
ENST00000350763	117788812	117788974	In-frame
ENST00000350763	117798376	117798520	In-frame
ENST00000350763	117800539	117800659	In-frame
ENST00000350763	117808688	117808961	In-frame
ENST00000350763	117810538	117810811	In-frame
ENST00000350763	117819431	117819704	In-frame
ENST00000350763	117822008	117822281	In-frame
ENST00000350763	117825195	117825468	In-frame
ENST00000350763	117826925	117827198	In-frame
ENST00000350763	117840221	117840491	In-frame
ENST00000350763	117846487	117846751	In-frame

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Infer the effects of exon skipping event on protein functional features for TNC

Exon skipping at the protein sequence level and followed lost functional features. * Click on the image to enlarge it in a new window.

Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.

ENST	Length of mRNA	Length of AA seq.	Genomic start	Genomic end	mRNA start	mRNA end	AA start	AA end
ENST00000350763	7658	2201	117846487	117846751	2280	2543	622	710
ENST00000350763	7658	2201	117840221	117840491	2817	3086	801	891
ENST00000350763	7658	2201	117826925	117827198	3627	3899	1071	1162
ENST00000350763	7658	2201	117826925	117827198	3627	3899	1071	1162
ENST00000350763	7658	2201	117825195	117825468	4173	4445	1253	1344
ENST00000350763	7658	2201	117822008	117822281	4446	4718	1344	1435
ENST00000350763	7658	2201	117822008	117822281	4446	4718	1344	1435
ENST00000350763	7658	2201	117819431	117819704	4719	4991	1435	1526
ENST00000350763	7658	2201	117810538	117810811	4992	5264	1526	1617
ENST00000350763	7658	2201	117808688	117808961	5265	5537	1617	1708
ENST00000350763	7658	2201	117800539	117800659	5805	5924	1797	1837
ENST00000350763	7658	2201	117798376	117798520	5925	6068	1837	1885
ENST00000350763	7658	2201	117788812	117788974	6582	6743	2056	2110

Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.

ENST	Length of mRNA	Length of AA seq.	Genomic start	Genomic end	mRNA start	mRNA end	AA start	AA end
ENST00000350763	7658	2201	117846487	117846751	2280	2543	622	710
ENST00000350763	7658	2201	117840221	117840491	2817	3086	801	891
ENST00000350763	7658	2201	117826925	117827198	3627	3899	1071	1162
ENST00000350763	7658	2201	117826925	117827198	3627	3899	1071	1162
ENST00000350763	7658	2201	117825195	117825468	4173	4445	1253	1344
ENST00000350763	7658	2201	117822008	117822281	4446	4718	1344	1435
ENST00000350763	7658	2201	117822008	117822281	4446	4718	1344	1435
ENST00000350763	7658	2201	117819431	117819704	4719	4991	1435	1526
ENST00000350763	7658	2201	117810538	117810811	4992	5264	1526	1617
ENST00000350763	7658	2201	117808688	117808961	5265	5537	1617	1708
ENST00000350763	7658	2201	117800539	117800659	5805	5924	1797	1837
ENST00000350763	7658	2201	117798376	117798520	5925	6068	1837	1885
ENST00000350763	7658	2201	117788812	117788974	6582	6743	2056	2110

Lost protein functional features of individual exon skipping events in TCGA.

UniProt acc.	Start of exon skipping (AA)	End of exon skipping (AA)	Protein feature start (AA)	Protein feature end (AA)	Category of protein feature	Description of feature
P24821	622	710	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	622	710	625	715	Domain	Note=Fibronectin type-III 1;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	622	710	680	680	Natural variant	ID=VAR_024268;Note=Q->R;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:1707164;Dbxref=dbSNP:rs1061494,PMID:1707164
P24821	801	891	807	813	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2RB8
P24821	801	891	819	824	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2RB8
P24821	801	891	831	839	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2RB8
P24821	801	891	842	844	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2RBL
P24821	801	891	847	852	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2RB8
P24821	801	891	857	860	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2RB8
P24821	801	891	868	877	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2RB8
P24821	801	891	885	890	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2RB8
P24821	801	891	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	801	891	716	804	Domain	Note=Fibronectin type-III 2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	801	891	805	894	Domain	Note=Fibronectin type-III 3;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	801	891	827	829	Helix	Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2RBL
P24821	801	891	850	850	Natural variant	ID=VAR_055779;Note=D->H;Dbxref=dbSNP:rs3748169
P24821	1071	1162	1072	1708	Alternative sequence	ID=VSP_001415;Note=In isoform 6. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:2466295;Dbxref=PMID:2466295
P24821	1071	1162	1072	1708	Alternative sequence	ID=VSP_001415;Note=In isoform 6. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:2466295;Dbxref=PMID:2466295
P24821	1071	1162	1072	1617	Alternative sequence	ID=VSP_001414;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1071	1162	1072	1617	Alternative sequence	ID=VSP_001414;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1071	1162	1072	1435	Alternative sequence	ID=VSP_001412;Note=In isoform 2 and isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1071	1162	1072	1435	Alternative sequence	ID=VSP_001412;Note=In isoform 2 and isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1071	1162	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	1071	1162	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	1071	1162	991	1075	Domain	Note=Fibronectin type-III 5;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1071	1162	991	1075	Domain	Note=Fibronectin type-III 5;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1071	1162	1076	1165	Domain	Note=Fibronectin type-III 6;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1071	1162	1076	1165	Domain	Note=Fibronectin type-III 6;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1071	1162	1079	1079	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:18780401;Dbxref=PMID:18780401
P24821	1071	1162	1079	1079	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:18780401;Dbxref=PMID:18780401
P24821	1071	1162	1093	1093	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:18780401;Dbxref=PMID:18780401
P24821	1071	1162	1093	1093	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:18780401;Dbxref=PMID:18780401
P24821	1071	1162	1119	1119	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000255;evidence=ECO:0000255
P24821	1071	1162	1119	1119	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000255;evidence=ECO:0000255
P24821	1253	1344	1072	1708	Alternative sequence	ID=VSP_001415;Note=In isoform 6. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:2466295;Dbxref=PMID:2466295
P24821	1253	1344	1072	1617	Alternative sequence	ID=VSP_001414;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1253	1344	1072	1435	Alternative sequence	ID=VSP_001412;Note=In isoform 2 and isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1253	1344	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	1253	1344	1167	1256	Domain	Note=Fibronectin type-III 7;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1253	1344	1258	1350	Domain	Note=Fibronectin type-III 8;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1253	1344	1261	1261	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:18780401;Dbxref=PMID:18780401
P24821	1253	1344	1275	1275	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19159218;Dbxref=PMID:19159218
P24821	1253	1344	1301	1301	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:18780401,ECO:0000269|PubMed:19159218;Dbxref=PMID:18780401,PMID:19159218
P24821	1344	1435	1072	1708	Alternative sequence	ID=VSP_001415;Note=In isoform 6. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:2466295;Dbxref=PMID:2466295
P24821	1344	1435	1072	1708	Alternative sequence	ID=VSP_001415;Note=In isoform 6. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:2466295;Dbxref=PMID:2466295
P24821	1344	1435	1072	1617	Alternative sequence	ID=VSP_001414;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1344	1435	1072	1617	Alternative sequence	ID=VSP_001414;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1344	1435	1072	1435	Alternative sequence	ID=VSP_001412;Note=In isoform 2 and isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1344	1435	1072	1435	Alternative sequence	ID=VSP_001412;Note=In isoform 2 and isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1344	1435	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	1344	1435	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	1344	1435	1258	1350	Domain	Note=Fibronectin type-III 8;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1344	1435	1258	1350	Domain	Note=Fibronectin type-III 8;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1344	1435	1351	1439	Domain	Note=Fibronectin type-III 9;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1344	1435	1351	1439	Domain	Note=Fibronectin type-III 9;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1344	1435	1366	1366	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19159218;Dbxref=PMID:19159218
P24821	1344	1435	1366	1366	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19159218;Dbxref=PMID:19159218
P24821	1344	1435	1392	1392	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000255;evidence=ECO:0000255
P24821	1344	1435	1392	1392	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000255;evidence=ECO:0000255
P24821	1435	1526	1072	1708	Alternative sequence	ID=VSP_001415;Note=In isoform 6. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:2466295;Dbxref=PMID:2466295
P24821	1435	1526	1072	1617	Alternative sequence	ID=VSP_001414;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1435	1526	1072	1435	Alternative sequence	ID=VSP_001412;Note=In isoform 2 and isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1435	1526	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	1435	1526	1351	1439	Domain	Note=Fibronectin type-III 9;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1435	1526	1440	1531	Domain	Note=Fibronectin type-III 10;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1435	1526	1445	1445	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000255;evidence=ECO:0000255
P24821	1435	1526	1455	1455	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000255;evidence=ECO:0000255
P24821	1435	1526	1485	1485	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:18780401,ECO:0000269|PubMed:19159218;Dbxref=PMID:18780401,PMID:19159218
P24821	1526	1617	1072	1708	Alternative sequence	ID=VSP_001415;Note=In isoform 6. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:2466295;Dbxref=PMID:2466295
P24821	1526	1617	1072	1617	Alternative sequence	ID=VSP_001414;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1526	1617	1527	1617	Alternative sequence	ID=VSP_001413;Note=In isoform 2 and isoform 4. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1526	1617	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	1526	1617	1440	1531	Domain	Note=Fibronectin type-III 10;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1526	1617	1533	1621	Domain	Note=Fibronectin type-III 11;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1526	1617	1534	1534	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000255;evidence=ECO:0000255
P24821	1526	1617	1600	1608	Sequence conflict	Note=SGFTQGHQT->LWLHPRASN;Ontology_term=ECO:0000305;evidence=ECO:0000305
P24821	1526	1617	1600	1608	Sequence conflict	Note=SGFTQGHQT->LWLHPRASN;Ontology_term=ECO:0000305;evidence=ECO:0000305
P24821	1526	1617	1600	1608	Sequence conflict	Note=SGFTQGHQT->LWLHPRASN;Ontology_term=ECO:0000305;evidence=ECO:0000305
P24821	1617	1708	1072	1708	Alternative sequence	ID=VSP_001415;Note=In isoform 6. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:2466295;Dbxref=PMID:2466295
P24821	1617	1708	1072	1617	Alternative sequence	ID=VSP_001414;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1617	1708	1527	1617	Alternative sequence	ID=VSP_001413;Note=In isoform 2 and isoform 4. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1617	1708	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	1617	1708	1533	1621	Domain	Note=Fibronectin type-III 11;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1617	1708	1622	1711	Domain	Note=Fibronectin type-III 12;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1617	1708	1677	1677	Natural variant	ID=VAR_060738;Note=I->L;Ontology_term=ECO:0000269,ECO:0000269,ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:1704365,ECO:0000269|PubMed:1719530,ECO:0000269|PubMed:2466295,ECO:0000269|PubMed:7531707;Dbxref=dbSNP:rs2104772,PMID:1704365,PMID:1719530,PMI
P24821	1797	1837	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	1797	1837	1712	1801	Domain	Note=Fibronectin type-III 13;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1797	1837	1802	1888	Domain	Note=Fibronectin type-III 14;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1797	1837	1809	1809	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:16335952;Dbxref=PMID:16335952
P24821	1837	1885	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	1837	1885	1802	1888	Domain	Note=Fibronectin type-III 14;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	2056	2110	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	2056	2110	1975	2190	Domain	Note=Fibrinogen C-terminal;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00739

Lost protein functional features of individual exon skipping events in GTEx.

UniProt acc.	Start of exon skipping (AA)	End of exon skipping (AA)	Protein feature start (AA)	Protein feature end (AA)	Category of protein feature	Description of feature
P24821	622	710	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	622	710	625	715	Domain	Note=Fibronectin type-III 1;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	622	710	680	680	Natural variant	ID=VAR_024268;Note=Q->R;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:1707164;Dbxref=dbSNP:rs1061494,PMID:1707164
P24821	801	891	807	813	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2RB8
P24821	801	891	819	824	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2RB8
P24821	801	891	831	839	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2RB8
P24821	801	891	842	844	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2RBL
P24821	801	891	847	852	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2RB8
P24821	801	891	857	860	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2RB8
P24821	801	891	868	877	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2RB8
P24821	801	891	885	890	Beta strand	Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2RB8
P24821	801	891	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	801	891	716	804	Domain	Note=Fibronectin type-III 2;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	801	891	805	894	Domain	Note=Fibronectin type-III 3;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	801	891	827	829	Helix	Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2RBL
P24821	801	891	850	850	Natural variant	ID=VAR_055779;Note=D->H;Dbxref=dbSNP:rs3748169
P24821	1071	1162	1072	1708	Alternative sequence	ID=VSP_001415;Note=In isoform 6. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:2466295;Dbxref=PMID:2466295
P24821	1071	1162	1072	1708	Alternative sequence	ID=VSP_001415;Note=In isoform 6. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:2466295;Dbxref=PMID:2466295
P24821	1071	1162	1072	1617	Alternative sequence	ID=VSP_001414;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1071	1162	1072	1617	Alternative sequence	ID=VSP_001414;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1071	1162	1072	1435	Alternative sequence	ID=VSP_001412;Note=In isoform 2 and isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1071	1162	1072	1435	Alternative sequence	ID=VSP_001412;Note=In isoform 2 and isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1071	1162	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	1071	1162	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	1071	1162	991	1075	Domain	Note=Fibronectin type-III 5;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1071	1162	991	1075	Domain	Note=Fibronectin type-III 5;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1071	1162	1076	1165	Domain	Note=Fibronectin type-III 6;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1071	1162	1076	1165	Domain	Note=Fibronectin type-III 6;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1071	1162	1079	1079	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:18780401;Dbxref=PMID:18780401
P24821	1071	1162	1079	1079	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:18780401;Dbxref=PMID:18780401
P24821	1071	1162	1093	1093	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:18780401;Dbxref=PMID:18780401
P24821	1071	1162	1093	1093	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:18780401;Dbxref=PMID:18780401
P24821	1071	1162	1119	1119	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000255;evidence=ECO:0000255
P24821	1071	1162	1119	1119	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000255;evidence=ECO:0000255
P24821	1253	1344	1072	1708	Alternative sequence	ID=VSP_001415;Note=In isoform 6. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:2466295;Dbxref=PMID:2466295
P24821	1253	1344	1072	1617	Alternative sequence	ID=VSP_001414;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1253	1344	1072	1435	Alternative sequence	ID=VSP_001412;Note=In isoform 2 and isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1253	1344	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	1253	1344	1167	1256	Domain	Note=Fibronectin type-III 7;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1253	1344	1258	1350	Domain	Note=Fibronectin type-III 8;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1253	1344	1261	1261	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:18780401;Dbxref=PMID:18780401
P24821	1253	1344	1275	1275	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19159218;Dbxref=PMID:19159218
P24821	1253	1344	1301	1301	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:18780401,ECO:0000269|PubMed:19159218;Dbxref=PMID:18780401,PMID:19159218
P24821	1344	1435	1072	1708	Alternative sequence	ID=VSP_001415;Note=In isoform 6. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:2466295;Dbxref=PMID:2466295
P24821	1344	1435	1072	1708	Alternative sequence	ID=VSP_001415;Note=In isoform 6. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:2466295;Dbxref=PMID:2466295
P24821	1344	1435	1072	1617	Alternative sequence	ID=VSP_001414;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1344	1435	1072	1617	Alternative sequence	ID=VSP_001414;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1344	1435	1072	1435	Alternative sequence	ID=VSP_001412;Note=In isoform 2 and isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1344	1435	1072	1435	Alternative sequence	ID=VSP_001412;Note=In isoform 2 and isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1344	1435	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	1344	1435	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	1344	1435	1258	1350	Domain	Note=Fibronectin type-III 8;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1344	1435	1258	1350	Domain	Note=Fibronectin type-III 8;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1344	1435	1351	1439	Domain	Note=Fibronectin type-III 9;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1344	1435	1351	1439	Domain	Note=Fibronectin type-III 9;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1344	1435	1366	1366	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19159218;Dbxref=PMID:19159218
P24821	1344	1435	1366	1366	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:19159218;Dbxref=PMID:19159218
P24821	1344	1435	1392	1392	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000255;evidence=ECO:0000255
P24821	1344	1435	1392	1392	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000255;evidence=ECO:0000255
P24821	1435	1526	1072	1708	Alternative sequence	ID=VSP_001415;Note=In isoform 6. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:2466295;Dbxref=PMID:2466295
P24821	1435	1526	1072	1617	Alternative sequence	ID=VSP_001414;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1435	1526	1072	1435	Alternative sequence	ID=VSP_001412;Note=In isoform 2 and isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1435	1526	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	1435	1526	1351	1439	Domain	Note=Fibronectin type-III 9;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1435	1526	1440	1531	Domain	Note=Fibronectin type-III 10;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1435	1526	1445	1445	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000255;evidence=ECO:0000255
P24821	1435	1526	1455	1455	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000255;evidence=ECO:0000255
P24821	1435	1526	1485	1485	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:18780401,ECO:0000269|PubMed:19159218;Dbxref=PMID:18780401,PMID:19159218
P24821	1526	1617	1072	1708	Alternative sequence	ID=VSP_001415;Note=In isoform 6. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:2466295;Dbxref=PMID:2466295
P24821	1526	1617	1072	1617	Alternative sequence	ID=VSP_001414;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1526	1617	1527	1617	Alternative sequence	ID=VSP_001413;Note=In isoform 2 and isoform 4. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1526	1617	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	1526	1617	1440	1531	Domain	Note=Fibronectin type-III 10;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1526	1617	1533	1621	Domain	Note=Fibronectin type-III 11;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1526	1617	1534	1534	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000255;evidence=ECO:0000255
P24821	1526	1617	1600	1608	Sequence conflict	Note=SGFTQGHQT->LWLHPRASN;Ontology_term=ECO:0000305;evidence=ECO:0000305
P24821	1526	1617	1600	1608	Sequence conflict	Note=SGFTQGHQT->LWLHPRASN;Ontology_term=ECO:0000305;evidence=ECO:0000305
P24821	1526	1617	1600	1608	Sequence conflict	Note=SGFTQGHQT->LWLHPRASN;Ontology_term=ECO:0000305;evidence=ECO:0000305
P24821	1617	1708	1072	1708	Alternative sequence	ID=VSP_001415;Note=In isoform 6. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:2466295;Dbxref=PMID:2466295
P24821	1617	1708	1072	1617	Alternative sequence	ID=VSP_001414;Note=In isoform 5. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1617	1708	1527	1617	Alternative sequence	ID=VSP_001413;Note=In isoform 2 and isoform 4. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:1707164;Dbxref=PMID:1707164
P24821	1617	1708	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	1617	1708	1533	1621	Domain	Note=Fibronectin type-III 11;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1617	1708	1622	1711	Domain	Note=Fibronectin type-III 12;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1617	1708	1677	1677	Natural variant	ID=VAR_060738;Note=I->L;Ontology_term=ECO:0000269,ECO:0000269,ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:1704365,ECO:0000269|PubMed:1719530,ECO:0000269|PubMed:2466295,ECO:0000269|PubMed:7531707;Dbxref=dbSNP:rs2104772,PMID:1704365,PMID:1719530,PMI
P24821	1797	1837	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	1797	1837	1712	1801	Domain	Note=Fibronectin type-III 13;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1797	1837	1802	1888	Domain	Note=Fibronectin type-III 14;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	1797	1837	1809	1809	Glycosylation	Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:16335952;Dbxref=PMID:16335952
P24821	1837	1885	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	1837	1885	1802	1888	Domain	Note=Fibronectin type-III 14;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00316
P24821	2056	2110	23	2201	Chain	ID=PRO_0000007741;Note=Tenascin
P24821	2056	2110	1975	2190	Domain	Note=Fibrinogen C-terminal;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00739

Top

SNVs in the skipped exons for TNC

- Lollipop plot for presenting exon skipping associated SNVs. * Click on the image to enlarge it in a new window.

- Differential PSIs between mutated versus non-mutated samples.

TNC_COAD_exon_skip_506466_psi_boxplot.png

TNC_LUAD_exon_skip_506466_psi_boxplot.png

- Non-synonymous mutations located in the skipped exons in TCGA.

Cancer type	Sample	ESID	Skipped exon start	Skipped exon end	Mutation start	Mutation end	Mutation type	Reference seq	Mutation seq	AAchange
LIHC	TCGA-DD-A1EG-01	exon_skip_506303	117798377	117798520	117798413	117798413	Frame_Shift_Del	G	-	p.Q1874fs
LIHC	TCGA-DD-A1EG-01	exon_skip_506320 exon_skip_506314 exon_skip_506313 exon_skip_506315	117808689	117808961	117808752	117808752	Frame_Shift_Del	T	-	p.I1688fs
LIHC	TCGA-G3-A3CJ-01	exon_skip_506343 exon_skip_506433 exon_skip_506432	117822009	117822281	117822047	117822047	Frame_Shift_Del	C	-	p.G1423fs
LIHC	TCGA-DD-A3A0-01	exon_skip_506455	117826075	117826347	117826248	117826248	Frame_Shift_Del	A	-	p.F1196fs
LIHC	TCGA-G3-A3CJ-01	exon_skip_506467	117840222	117840491	117840417	117840417	Frame_Shift_Del	G	-	p.L827fs
LIHC	TCGA-G3-A3CJ-01	exon_skip_506467	117840222	117840491	117840478	117840478	Frame_Shift_Del	G	-	p.P806fs
LIHC	TCGA-DD-A3A0-01	exon_skip_506470	117852841	117853433	117853078	117853078	Frame_Shift_Del	C	-	p.E74fs
LIHC	TCGA-BC-A10T-01	exon_skip_506455	117826075	117826347	117826154	117826155	Frame_Shift_Ins	-	G	p.G1227fs
UCEC	TCGA-BS-A0TJ-01	exon_skip_506298	117786252	117786415	117786399	117786399	Nonsense_Mutation	G	T	p.Y2116*
LUSC	TCGA-18-4083-01	exon_skip_506320 exon_skip_506314 exon_skip_506313 exon_skip_506315	117808689	117808961	117808740	117808740	Nonsense_Mutation	C	A	p.G1692*
LUAD	TCGA-80-5607-01	exon_skip_506320 exon_skip_506314 exon_skip_506313 exon_skip_506315	117808689	117808961	117808761	117808761	Nonsense_Mutation	C	A	p.E1685*
COAD	TCGA-G4-6309-01	exon_skip_506455	117826075	117826347	117826075	117826075	Nonsense_Mutation	C	A	p.E1254X
LUAD	TCGA-44-2656-01	exon_skip_506466	117826926	117827198	117826978	117826978	Nonsense_Mutation	A	C	p.Y1145*
COAD	TCGA-AZ-6601-01	exon_skip_506466	117826926	117827198	117827110	117827110	Nonsense_Mutation	A	T	p.Y1101X
BLCA	TCGA-DK-A2I4-01	exon_skip_506467	117840222	117840491	117840339	117840339	Nonsense_Mutation	C	A	p.E853*
STAD	TCGA-BR-8487-01	exon_skip_506470	117852841	117853433	117852871	117852871	Nonsense_Mutation	C	A	p.G143*
STAD	TCGA-BR-8487-01	exon_skip_506470	117852841	117853433	117852871	117852871	Nonsense_Mutation	C	A	p.G143X
SARC	TCGA-X9-A971-01	exon_skip_506320 exon_skip_506314 exon_skip_506313 exon_skip_506315	117808689	117808961	117808688	117808688	Splice_Site	C	G	e16+1
LUSC	TCGA-22-4595-01	exon_skip_506468	117846488	117846751	117846753	117846753	Splice_Site	T	C	p.V623_splice

- Depth of coverage in the three exons composing exon skipping event

Depth of coverage in three exons	Mutation description
	Sample: TCGA-44-2656-01
	Cancer type: LUAD
	ESID: exon_skip_506466
	Skipped exon start: 117826926
	Skipped exon end: 117827198
	Mutation start: 117826978
	Mutation end: 117826978
	Mutation type: Nonsense_Mutation
	Reference seq: A
	Mutation seq: C
	AAchange: p.Y1145*
exon_skip_106588_LUAD_TCGA-44-2656-01.png
exon_skip_10918_LUAD_TCGA-44-2656-01.png
exon_skip_134787_LUAD_TCGA-44-2656-01.png
exon_skip_291076_LUAD_TCGA-44-2656-01.png
exon_skip_347690_LUAD_TCGA-44-2656-01.png
exon_skip_353194_LUAD_TCGA-44-2656-01.png
exon_skip_374468_LUAD_TCGA-44-2656-01.png
exon_skip_374469_LUAD_TCGA-44-2656-01.png
exon_skip_3814_LUAD_TCGA-44-2656-01.png
exon_skip_3815_LUAD_TCGA-44-2656-01.png
exon_skip_390105_LUAD_TCGA-44-2656-01.png
exon_skip_451924_LUAD_TCGA-44-2656-01.png
exon_skip_451926_LUAD_TCGA-44-2656-01.png
exon_skip_46116_LUAD_TCGA-44-2656-01.png
exon_skip_48232_LUAD_TCGA-44-2656-01.png
exon_skip_503611_LUAD_TCGA-44-2656-01.png
exon_skip_506466_LUAD_TCGA-44-2656-01.png
	Sample: TCGA-X9-A971-01
	Cancer type: SARC
	ESID: exon_skip_506315
	Skipped exon start: 117808689
	Skipped exon end: 117808961
	Mutation start: 117808688
	Mutation end: 117808688
	Mutation type: Splice_Site
	Reference seq: C
	Mutation seq: G
	AAchange: e16+1
exon_skip_506315_SARC_TCGA-X9-A971-01.png
exon_skip_506320_SARC_TCGA-X9-A971-01.png
	Sample: TCGA-80-5607-01
	Cancer type: LUAD
	ESID: exon_skip_506315
	Skipped exon start: 117808689
	Skipped exon end: 117808961
	Mutation start: 117808761
	Mutation end: 117808761
	Mutation type: Nonsense_Mutation
	Reference seq: C
	Mutation seq: A
	AAchange: p.E1685*
exon_skip_506320_LUAD_TCGA-80-5607-01.png
	Sample: TCGA-18-4083-01
	Cancer type: LUSC
	ESID: exon_skip_506315
	Skipped exon start: 117808689
	Skipped exon end: 117808961
	Mutation start: 117808740
	Mutation end: 117808740
	Mutation type: Nonsense_Mutation
	Reference seq: C
	Mutation seq: A
	AAchange: p.G1692*
exon_skip_19747_LUSC_TCGA-18-4083-01.png
exon_skip_506320_LUSC_TCGA-18-4083-01.png
exon_skip_62335_LUSC_TCGA-18-4083-01.png
	Sample: TCGA-DD-A1EG-01
	Cancer type: LIHC
	ESID: exon_skip_506303
	Skipped exon start: 117798377
	Skipped exon end: 117798520
	Mutation start: 117798413
	Mutation end: 117798413
	Mutation type: Frame_Shift_Del
	Reference seq: G
	Mutation seq: -
	AAchange: p.Q1874fs
	Sample: TCGA-DD-A1EG-01
	Cancer type: LIHC
	ESID: exon_skip_506315
	Skipped exon start: 117808689
	Skipped exon end: 117808961
	Mutation start: 117808752
	Mutation end: 117808752
	Mutation type: Frame_Shift_Del
	Reference seq: T
	Mutation seq: -
	AAchange: p.I1688fs
exon_skip_103075_LIHC_TCGA-DD-A1EG-01.png
exon_skip_100809_LIHC_TCGA-DD-A1EG-01.png
exon_skip_101656_LIHC_TCGA-DD-A1EG-01.png
exon_skip_10700_LIHC_TCGA-DD-A1EG-01.png
exon_skip_109033_LIHC_TCGA-DD-A1EG-01.png
exon_skip_110000_LIHC_TCGA-DD-A1EG-01.png
exon_skip_110381_LIHC_TCGA-DD-A1EG-01.png
exon_skip_110545_LIHC_TCGA-DD-A1EG-01.png
exon_skip_11218_LIHC_TCGA-DD-A1EG-01.png
exon_skip_11256_LIHC_TCGA-DD-A1EG-01.png
exon_skip_11259_LIHC_TCGA-DD-A1EG-01.png
exon_skip_11263_LIHC_TCGA-DD-A1EG-01.png
exon_skip_115462_LIHC_TCGA-DD-A1EG-01.png
exon_skip_115587_LIHC_TCGA-DD-A1EG-01.png
exon_skip_116330_LIHC_TCGA-DD-A1EG-01.png
exon_skip_121002_LIHC_TCGA-DD-A1EG-01.png
exon_skip_123667_LIHC_TCGA-DD-A1EG-01.png
exon_skip_12440_LIHC_TCGA-DD-A1EG-01.png
exon_skip_125045_LIHC_TCGA-DD-A1EG-01.png
exon_skip_129202_LIHC_TCGA-DD-A1EG-01.png
exon_skip_129996_LIHC_TCGA-DD-A1EG-01.png
exon_skip_130099_LIHC_TCGA-DD-A1EG-01.png
exon_skip_13071_LIHC_TCGA-DD-A1EG-01.png
exon_skip_131505_LIHC_TCGA-DD-A1EG-01.png
exon_skip_131697_LIHC_TCGA-DD-A1EG-01.png
exon_skip_133542_LIHC_TCGA-DD-A1EG-01.png
exon_skip_133548_LIHC_TCGA-DD-A1EG-01.png
exon_skip_134792_LIHC_TCGA-DD-A1EG-01.png
exon_skip_135418_LIHC_TCGA-DD-A1EG-01.png
exon_skip_135741_LIHC_TCGA-DD-A1EG-01.png
exon_skip_135763_LIHC_TCGA-DD-A1EG-01.png
exon_skip_135820_LIHC_TCGA-DD-A1EG-01.png
exon_skip_13608_LIHC_TCGA-DD-A1EG-01.png
exon_skip_138255_LIHC_TCGA-DD-A1EG-01.png
exon_skip_138373_LIHC_TCGA-DD-A1EG-01.png
exon_skip_138947_LIHC_TCGA-DD-A1EG-01.png
exon_skip_140996_LIHC_TCGA-DD-A1EG-01.png
exon_skip_141914_LIHC_TCGA-DD-A1EG-01.png
exon_skip_143553_LIHC_TCGA-DD-A1EG-01.png
exon_skip_143841_LIHC_TCGA-DD-A1EG-01.png
exon_skip_143843_LIHC_TCGA-DD-A1EG-01.png
exon_skip_144075_LIHC_TCGA-DD-A1EG-01.png
exon_skip_144116_LIHC_TCGA-DD-A1EG-01.png
exon_skip_144125_LIHC_TCGA-DD-A1EG-01.png
exon_skip_146762_LIHC_TCGA-DD-A1EG-01.png
exon_skip_146776_LIHC_TCGA-DD-A1EG-01.png
exon_skip_146807_LIHC_TCGA-DD-A1EG-01.png
exon_skip_14772_LIHC_TCGA-DD-A1EG-01.png
exon_skip_148738_LIHC_TCGA-DD-A1EG-01.png
exon_skip_148740_LIHC_TCGA-DD-A1EG-01.png
exon_skip_14897_LIHC_TCGA-DD-A1EG-01.png
exon_skip_14899_LIHC_TCGA-DD-A1EG-01.png
exon_skip_15042_LIHC_TCGA-DD-A1EG-01.png
exon_skip_150985_LIHC_TCGA-DD-A1EG-01.png
exon_skip_153494_LIHC_TCGA-DD-A1EG-01.png
exon_skip_155021_LIHC_TCGA-DD-A1EG-01.png
exon_skip_16928_LIHC_TCGA-DD-A1EG-01.png
exon_skip_17317_LIHC_TCGA-DD-A1EG-01.png
exon_skip_17318_LIHC_TCGA-DD-A1EG-01.png
exon_skip_17943_LIHC_TCGA-DD-A1EG-01.png
exon_skip_18708_LIHC_TCGA-DD-A1EG-01.png
exon_skip_19048_LIHC_TCGA-DD-A1EG-01.png
exon_skip_1906_LIHC_TCGA-DD-A1EG-01.png
exon_skip_19372_LIHC_TCGA-DD-A1EG-01.png
exon_skip_19902_LIHC_TCGA-DD-A1EG-01.png
exon_skip_20061_LIHC_TCGA-DD-A1EG-01.png
exon_skip_22876_LIHC_TCGA-DD-A1EG-01.png
exon_skip_2523_LIHC_TCGA-DD-A1EG-01.png
exon_skip_26461_LIHC_TCGA-DD-A1EG-01.png
exon_skip_27038_LIHC_TCGA-DD-A1EG-01.png
exon_skip_27065_LIHC_TCGA-DD-A1EG-01.png
exon_skip_283878_LIHC_TCGA-DD-A1EG-01.png
exon_skip_284109_LIHC_TCGA-DD-A1EG-01.png
exon_skip_288112_LIHC_TCGA-DD-A1EG-01.png
exon_skip_290222_LIHC_TCGA-DD-A1EG-01.png
exon_skip_290223_LIHC_TCGA-DD-A1EG-01.png
exon_skip_29032_LIHC_TCGA-DD-A1EG-01.png
exon_skip_290_LIHC_TCGA-DD-A1EG-01.png
exon_skip_291361_LIHC_TCGA-DD-A1EG-01.png
exon_skip_291973_LIHC_TCGA-DD-A1EG-01.png
exon_skip_29487_LIHC_TCGA-DD-A1EG-01.png
exon_skip_295443_LIHC_TCGA-DD-A1EG-01.png
exon_skip_297892_LIHC_TCGA-DD-A1EG-01.png
exon_skip_299242_LIHC_TCGA-DD-A1EG-01.png
exon_skip_30164_LIHC_TCGA-DD-A1EG-01.png
exon_skip_30165_LIHC_TCGA-DD-A1EG-01.png
exon_skip_302094_LIHC_TCGA-DD-A1EG-01.png
exon_skip_302095_LIHC_TCGA-DD-A1EG-01.png
exon_skip_302097_LIHC_TCGA-DD-A1EG-01.png
exon_skip_302181_LIHC_TCGA-DD-A1EG-01.png
exon_skip_305812_LIHC_TCGA-DD-A1EG-01.png
exon_skip_305815_LIHC_TCGA-DD-A1EG-01.png
exon_skip_3064_LIHC_TCGA-DD-A1EG-01.png
exon_skip_307291_LIHC_TCGA-DD-A1EG-01.png
exon_skip_307292_LIHC_TCGA-DD-A1EG-01.png
exon_skip_30744_LIHC_TCGA-DD-A1EG-01.png
exon_skip_307494_LIHC_TCGA-DD-A1EG-01.png
exon_skip_307495_LIHC_TCGA-DD-A1EG-01.png
exon_skip_30789_LIHC_TCGA-DD-A1EG-01.png
exon_skip_30792_LIHC_TCGA-DD-A1EG-01.png
exon_skip_308209_LIHC_TCGA-DD-A1EG-01.png
exon_skip_308211_LIHC_TCGA-DD-A1EG-01.png
exon_skip_308911_LIHC_TCGA-DD-A1EG-01.png
exon_skip_309060_LIHC_TCGA-DD-A1EG-01.png
exon_skip_309486_LIHC_TCGA-DD-A1EG-01.png
exon_skip_309505_LIHC_TCGA-DD-A1EG-01.png
exon_skip_309539_LIHC_TCGA-DD-A1EG-01.png
exon_skip_311823_LIHC_TCGA-DD-A1EG-01.png
exon_skip_311841_LIHC_TCGA-DD-A1EG-01.png
exon_skip_312748_LIHC_TCGA-DD-A1EG-01.png
exon_skip_315763_LIHC_TCGA-DD-A1EG-01.png
exon_skip_315773_LIHC_TCGA-DD-A1EG-01.png
exon_skip_316803_LIHC_TCGA-DD-A1EG-01.png
exon_skip_31766_LIHC_TCGA-DD-A1EG-01.png
exon_skip_318224_LIHC_TCGA-DD-A1EG-01.png
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	Sample: TCGA-X9-A971-01
	Cancer type: SARC
	ESID: exon_skip_506315
	Skipped exon start: 117808689
	Skipped exon end: 117808961
	Mutation start: 117808688
	Mutation end: 117808688
	Mutation type: Splice_Site
	Reference seq: C
	Mutation seq: G
	AAchange: e16+1
exon_skip_506315_SARC_TCGA-X9-A971-01.png
exon_skip_506320_SARC_TCGA-X9-A971-01.png
	Sample: TCGA-80-5607-01
	Cancer type: LUAD
	ESID: exon_skip_506315
	Skipped exon start: 117808689
	Skipped exon end: 117808961
	Mutation start: 117808761
	Mutation end: 117808761
	Mutation type: Nonsense_Mutation
	Reference seq: C
	Mutation seq: A
	AAchange: p.E1685*
exon_skip_506320_LUAD_TCGA-80-5607-01.png
	Sample: TCGA-18-4083-01
	Cancer type: LUSC
	ESID: exon_skip_506315
	Skipped exon start: 117808689
	Skipped exon end: 117808961
	Mutation start: 117808740
	Mutation end: 117808740
	Mutation type: Nonsense_Mutation
	Reference seq: C
	Mutation seq: A
	AAchange: p.G1692*
exon_skip_19747_LUSC_TCGA-18-4083-01.png
exon_skip_506320_LUSC_TCGA-18-4083-01.png
exon_skip_62335_LUSC_TCGA-18-4083-01.png
	Sample: TCGA-DD-A1EG-01
	Cancer type: LIHC
	ESID: exon_skip_506303
	Skipped exon start: 117798377
	Skipped exon end: 117798520
	Mutation start: 117798413
	Mutation end: 117798413
	Mutation type: Frame_Shift_Del
	Reference seq: G
	Mutation seq: -
	AAchange: p.Q1874fs
	Sample: TCGA-DD-A1EG-01
	Cancer type: LIHC
	ESID: exon_skip_506315
	Skipped exon start: 117808689
	Skipped exon end: 117808961
	Mutation start: 117808752
	Mutation end: 117808752
	Mutation type: Frame_Shift_Del
	Reference seq: T
	Mutation seq: -
	AAchange: p.I1688fs
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- Non-synonymous mutations located in the skipped exons in CCLE.

Sample	Skipped exon start	Skipped exon end	Mutation start	Mutation end	Mutation type	Reference seq	Mutation seq	AAchange
EBC1_LUNG	117846488	117846751	117846638	117846647	Frame_Shift_Del	CGTGGGTGGG	-	p.PTHE658fs
LU99_LUNG	117798377	117798520	117798481	117798482	In_Frame_Ins	-	TCA	p.1851_1851E>VK
IHH4_THYROID	117786252	117786415	117786391	117786391	Missense_Mutation	C	G	p.G2119A
MIAPACA2_PANCREAS	117788813	117788974	117788851	117788851	Missense_Mutation	C	T	p.R2098H
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	117788813	117788974	117788852	117788852	Missense_Mutation	G	A	p.R2098C
SNU719_STOMACH	117798377	117798520	117798383	117798383	Missense_Mutation	T	G	p.T1884P
CAL148_BREAST	117798377	117798520	117798406	117798406	Missense_Mutation	C	T	p.S1876N
DOV13_OVARY	117800540	117800659	117800599	117800599	Missense_Mutation	C	T	p.R1818K
BICR18_UPPER_AERODIGESTIVE_TRACT	117800540	117800659	117800599	117800599	Missense_Mutation	C	A	p.R1818M
P30OHK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	117800540	117800659	117800621	117800621	Missense_Mutation	T	C	p.T1811A
MET2B	117808689	117808961	117808755	117808755	Missense_Mutation	C	T	p.E1687K
UMUC1_URINARY_TRACT	117808689	117808961	117808800	117808800	Missense_Mutation	C	T	p.E1672K
A2058_SKIN	117808689	117808961	117808872	117808872	Missense_Mutation	C	T	p.D1648N
KMRC3_KIDNEY	117808689	117808961	117808882	117808882	Missense_Mutation	T	G	p.E1644D
NCIH1048_LUNG	117808689	117808961	117808952	117808952	Missense_Mutation	G	T	p.P1621Q
U2OS_BONE	117810539	117810811	117810562	117810562	Missense_Mutation	G	A	p.P1610L
LOXIMVI_SKIN	117810539	117810811	117810597	117810597	Missense_Mutation	C	T	p.M1598I
BICR18_UPPER_AERODIGESTIVE_TRACT	117810539	117810811	117810742	117810742	Missense_Mutation	A	G	p.M1550T
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	117810539	117810811	117810742	117810742	Missense_Mutation	A	G	p.M1550T
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	117810539	117810811	117810772	117810772	Missense_Mutation	A	G	p.I1540T
TE1_OESOPHAGUS	117810539	117810811	117810775	117810775	Missense_Mutation	T	A	p.D1539V
HCT116_LARGE_INTESTINE	117819432	117819704	117819440	117819440	Missense_Mutation	G	A	p.A1524V
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	117819432	117819704	117819449	117819449	Missense_Mutation	C	G	p.S1521T
TUR_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	117819432	117819704	117819449	117819449	Missense_Mutation	C	G	p.S1521T
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	117819432	117819704	117819465	117819465	Missense_Mutation	G	C	p.R1516G
JHUEM7_ENDOMETRIUM	117819432	117819704	117819615	117819615	Missense_Mutation	C	T	p.E1466K
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	117819432	117819704	117819615	117819615	Missense_Mutation	C	T	p.E1466K
BICR18_UPPER_AERODIGESTIVE_TRACT	117819432	117819704	117819701	117819701	Missense_Mutation	T	C	p.K1437R
RERFLCAD1_LUNG	117822009	117822281	117822087	117822087	Missense_Mutation	C	A	p.A1410S
KARPAS45_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	117822009	117822281	117822134	117822134	Missense_Mutation	G	A	p.T1394M
HCT15_LARGE_INTESTINE	117822009	117822281	117822175	117822175	Missense_Mutation	C	A	p.Q1380H
YD38_UPPER_AERODIGESTIVE_TRACT	117825196	117825468	117825201	117825201	Missense_Mutation	A	G	p.V1343A
NCIBL128_MATCHED_NORMAL_TISSUE	117825196	117825468	117825211	117825211	Missense_Mutation	C	T	p.V1340I
NCIH128_LUNG	117825196	117825468	117825211	117825211	Missense_Mutation	C	T	p.V1340I
A549_LUNG	117825196	117825468	117825250	117825250	Missense_Mutation	G	T	p.H1327N
HCC15_LUNG	117825196	117825468	117825298	117825298	Missense_Mutation	T	G	p.M1311L
SNU407_LARGE_INTESTINE	117825196	117825468	117825353	117825353	Missense_Mutation	C	A	p.E1292D
KARPAS45_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	117825196	117825468	117825396	117825396	Missense_Mutation	G	A	p.T1278M
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	117825196	117825468	117825396	117825396	Missense_Mutation	G	A	p.T1278M
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	117825196	117825468	117825399	117825399	Missense_Mutation	G	C	p.T1277S
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	117825196	117825468	117825431	117825431	Missense_Mutation	C	A	p.E1266D
GP2D_LARGE_INTESTINE	117826075	117826347	117826162	117826162	Missense_Mutation	G	A	p.L1225F
GP5D_LARGE_INTESTINE	117826075	117826347	117826162	117826162	Missense_Mutation	G	A	p.L1225F
LS411N_LARGE_INTESTINE	117826075	117826347	117826242	117826242	Missense_Mutation	T	C	p.Q1198R
MDST8_LARGE_INTESTINE	117826075	117826347	117826294	117826294	Missense_Mutation	G	A	p.L1181F
MZ7MEL_SKIN	117826075	117826347	117826330	117826330	Missense_Mutation	C	T	p.G1169R
DG75_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	117826926	117827198	117826983	117826983	Missense_Mutation	T	C	p.I1144V
SNU216_STOMACH	117826926	117827198	117827009	117827009	Missense_Mutation	T	G	p.K1135T
ES8_BONE	117826926	117827198	117827034	117827034	Missense_Mutation	G	A	p.R1127W
MC1010_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	117826926	117827198	117827070	117827070	Missense_Mutation	C	T	p.E1115K
JHUEM2_ENDOMETRIUM	117826926	117827198	117827081	117827081	Missense_Mutation	G	A	p.A1111V
NCIBL2126_MATCHED_NORMAL_TISSUE	117826926	117827198	117827154	117827154	Missense_Mutation	A	C	p.W1087G
NCIH2126_LUNG	117826926	117827198	117827154	117827154	Missense_Mutation	A	C	p.W1087G
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	117840222	117840491	117840237	117840237	Missense_Mutation	C	G	p.E887Q
HMC18_BREAST	117840222	117840491	117840256	117840256	Missense_Mutation	C	T	p.M880I
NCIH1781_LUNG	117840222	117840491	117840258	117840258	Missense_Mutation	T	C	p.M880V
GP2D_LARGE_INTESTINE	117840222	117840491	117840287	117840287	Missense_Mutation	T	C	p.E870G
GP5D_LARGE_INTESTINE	117840222	117840491	117840287	117840287	Missense_Mutation	T	C	p.E870G
201T_LUNG	117840222	117840491	117840288	117840288	Missense_Mutation	C	T	p.E870K
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	117840222	117840491	117840348	117840348	Missense_Mutation	C	G	p.D850H
KYSE150_OESOPHAGUS	117840222	117840491	117840348	117840348	Missense_Mutation	C	G	p.D850H
HS839T_FIBROBLAST	117840222	117840491	117840431	117840431	Missense_Mutation	G	C	p.T822S
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	117840222	117840491	117840431	117840431	Missense_Mutation	G	C	p.T822S
NCIH441_LUNG	117840222	117840491	117840457	117840457	Missense_Mutation	A	C	p.D813E
SNUC2A_LARGE_INTESTINE	117846488	117846751	117846643	117846643	Missense_Mutation	G	A	p.T659I
SNUC2B_LARGE_INTESTINE	117846488	117846751	117846643	117846643	Missense_Mutation	G	A	p.T659I
SNU1040_LARGE_INTESTINE	117846488	117846751	117846716	117846716	Missense_Mutation	T	C	p.T635A
ES2_OVARY	117846488	117846751	117846722	117846722	Missense_Mutation	C	T	p.E633K
RKO_LARGE_INTESTINE	117846488	117846751	117846745	117846745	Missense_Mutation	G	A	p.P625L
LS411N_LARGE_INTESTINE	117852841	117853433	117852864	117852864	Missense_Mutation	C	T	p.G145D
HS939T_SKIN	117852841	117853433	117853080	117853080	Missense_Mutation	C	T	p.G73E
TE125T_FIBROBLAST	117852841	117853433	117853098	117853098	Missense_Mutation	T	C	p.D67G
DJM1_SKIN	117852841	117853433	117853099	117853099	Missense_Mutation	C	T	p.D67N
MELHO_SKIN	117852841	117853433	117853192	117853192	Missense_Mutation	C	G	p.G36R
KNS62_LUNG	117852841	117853433	117853209	117853209	Missense_Mutation	C	T	p.R30Q
ATN1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	117852841	117853433	117853209	117853209	Missense_Mutation	C	T	p.R30Q
SH10TC_STOMACH	117852841	117853433	117853243	117853243	Missense_Mutation	C	T	p.A19T
HEC251_ENDOMETRIUM	117852841	117853433	117853171	117853171	Nonsense_Mutation	C	A	p.E43*
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	117819432	117819704	117819703	117819703	Splice_Site	G	A	p.A1436A

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for TNC

sQTL information located at the skipped exons.

Exon skip ID	Chromosome	Three exons	Skippped exon	ENST	Cancer type	SNP id	Location	DNA change (ref/var)	P-value
exon_skip_506415	9	117810538:117810811:117819431:117819704:117822008:117822281	117819431:117819704	ENST00000350763.4	BRCA	rs17819466	chr9:117819436	C/T	6.99e-05
exon_skip_506415	9	117810538:117810811:117819431:117819704:117822008:117822281	117819431:117819704	ENST00000350763.4	STAD	rs17819466	chr9:117819436	C/T	2.95e-04
exon_skip_506415	9	117810538:117810811:117819431:117819704:117822008:117822281	117819431:117819704	ENST00000350763.4	STAD	rs17819466	chr9:117819436	C/T	7.46e-04
exon_skip_506419	9	117810538:117810811:117819431:117819704:117835881:117835920	117819431:117819704	ENST00000340094.3	BRCA	rs17819466	chr9:117819436	C/T	6.99e-05
exon_skip_506419	9	117810538:117810811:117819431:117819704:117835881:117835920	117819431:117819704	ENST00000340094.3	STAD	rs17819466	chr9:117819436	C/T	2.95e-04
exon_skip_506419	9	117810538:117810811:117819431:117819704:117835881:117835920	117819431:117819704	ENST00000340094.3	STAD	rs17819466	chr9:117819436	C/T	7.46e-04
exon_skip_506468	9	117844970:117845086:117846487:117846751:117848142:117849552	117846487:117846751	ENST00000542877.1,ENST00000535648.1,ENST00000350763.4,ENST00000423613.2,ENST00000340094.3,ENST00000345230.3,ENST00000346706.3,ENST00000341037.4,ENST00000537320.1	GBM	rs1061494	chr9:117846580	T/C	9.45e-05
exon_skip_506320	9	117804497:117804620:117808688:117808961:117835881:117835920	117808688:117808961	ENST00000346706.3	HNSC	rs2104772	chr9:117808785	T/A	2.57e-06
exon_skip_506320	9	117804497:117804620:117808688:117808961:117835881:117835920	117808688:117808961	ENST00000346706.3	BRCA	rs2104772	chr9:117808785	T/A	2.03e-03
exon_skip_506384	9	117808745:117808961:117815018:117815294:117819431:117819580	117815018:117815294	ENST00000542877.1	HNSC	rs62578424	chr9:117815036	G/A	7.49e-04
exon_skip_506384	9	117808745:117808961:117815018:117815294:117819431:117819580	117815018:117815294	ENST00000542877.1	HNSC	rs11794797	chr9:117815273	G/A	2.04e-03
exon_skip_506384	9	117808745:117808961:117815018:117815294:117819431:117819580	117815018:117815294	ENST00000542877.1	BRCA	rs62578424	chr9:117815036	G/A	5.79e-04
exon_skip_506384	9	117808745:117808961:117815018:117815294:117819431:117819580	117815018:117815294	ENST00000542877.1	STAD	rs62578424	chr9:117815036	G/A	2.18e-04
exon_skip_506384	9	117808745:117808961:117815018:117815294:117819431:117819580	117815018:117815294	ENST00000542877.1	STAD	rs62578424	chr9:117815036	G/A	3.62e-04
exon_skip_506384	9	117808745:117808961:117815018:117815294:117819431:117819580	117815018:117815294	ENST00000542877.1	STAD	rs62578424	chr9:117815036	G/A	1.47e-03
exon_skip_506314	9	117804497:117804620:117808688:117808961:117815018:117815294	117808688:117808961	ENST00000542877.1	HNSC	rs2104772	chr9:117808785	T/A	2.57e-06
exon_skip_506314	9	117804497:117804620:117808688:117808961:117815018:117815294	117808688:117808961	ENST00000542877.1	BRCA	rs2104772	chr9:117808785	T/A	2.03e-03
exon_skip_506313	9	117804497:117804620:117808688:117808961:117810538:117810811	117808688:117808961	ENST00000350763.4,ENST00000340094.3	HNSC	rs2104772	chr9:117808785	T/A	2.57e-06
exon_skip_506313	9	117804497:117804620:117808688:117808961:117810538:117810811	117808688:117808961	ENST00000350763.4,ENST00000340094.3	BRCA	rs2104772	chr9:117808785	T/A	2.03e-03
exon_skip_506390	9	117808745:117808961:117819431:117819704:117822008:117822090	117819431:117819704	ENST00000341037.4	BRCA	rs17819466	chr9:117819436	C/T	6.99e-05
exon_skip_506390	9	117808745:117808961:117819431:117819704:117822008:117822090	117819431:117819704	ENST00000341037.4	STAD	rs17819466	chr9:117819436	C/T	2.95e-04
exon_skip_506390	9	117808745:117808961:117819431:117819704:117822008:117822090	117819431:117819704	ENST00000341037.4	STAD	rs17819466	chr9:117819436	C/T	7.46e-04
exon_skip_506393	9	117808745:117808961:117819431:117819704:117826925:117827191	117819431:117819704	ENST00000544972.1	BRCA	rs17819466	chr9:117819436	C/T	6.99e-05
exon_skip_506393	9	117808745:117808961:117819431:117819704:117826925:117827191	117819431:117819704	ENST00000544972.1	STAD	rs17819466	chr9:117819436	C/T	2.95e-04
exon_skip_506393	9	117808745:117808961:117819431:117819704:117826925:117827191	117819431:117819704	ENST00000544972.1	STAD	rs17819466	chr9:117819436	C/T	7.46e-04
exon_skip_506408	9	117810538:117810811:117815018:117815294:117817754:117818027	117815018:117815294	ENST00000481475.1	HNSC	rs62578424	chr9:117815036	G/A	7.49e-04
exon_skip_506408	9	117810538:117810811:117815018:117815294:117817754:117818027	117815018:117815294	ENST00000481475.1	HNSC	rs11794797	chr9:117815273	G/A	2.04e-03
exon_skip_506408	9	117810538:117810811:117815018:117815294:117817754:117818027	117815018:117815294	ENST00000481475.1	BRCA	rs62578424	chr9:117815036	G/A	5.79e-04
exon_skip_506408	9	117810538:117810811:117815018:117815294:117817754:117818027	117815018:117815294	ENST00000481475.1	STAD	rs62578424	chr9:117815036	G/A	2.18e-04
exon_skip_506408	9	117810538:117810811:117815018:117815294:117817754:117818027	117815018:117815294	ENST00000481475.1	STAD	rs62578424	chr9:117815036	G/A	3.62e-04
exon_skip_506408	9	117810538:117810811:117815018:117815294:117817754:117818027	117815018:117815294	ENST00000481475.1	STAD	rs62578424	chr9:117815036	G/A	1.47e-03
exon_skip_506394	9	117808778:117808961:117819431:117819704:117835881:117835920	117819431:117819704	ENST00000535648.1	BRCA	rs17819466	chr9:117819436	C/T	6.99e-05
exon_skip_506394	9	117808778:117808961:117819431:117819704:117835881:117835920	117819431:117819704	ENST00000535648.1	STAD	rs17819466	chr9:117819436	C/T	2.95e-04
exon_skip_506394	9	117808778:117808961:117819431:117819704:117835881:117835920	117819431:117819704	ENST00000535648.1	STAD	rs17819466	chr9:117819436	C/T	7.46e-04
exon_skip_506315	9	117804497:117804620:117808688:117808961:117819431:117819580	117808688:117808961	ENST00000535648.1,ENST00000341037.4,ENST00000544972.1	HNSC	rs2104772	chr9:117808785	T/A	2.57e-06
exon_skip_506315	9	117804497:117804620:117808688:117808961:117819431:117819580	117808688:117808961	ENST00000535648.1,ENST00000341037.4,ENST00000544972.1	BRCA	rs2104772	chr9:117808785	T/A	2.03e-03
exon_skip_506470	9	117848142:117849552:117852840:117853433:117880260:117880478	117852840:117853433	ENST00000535648.1,ENST00000350763.4,ENST00000345230.3,ENST00000346706.3	GBM	rs944510	chr9:117853022	C/T	6.89e-05

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for TNC

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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for TNC

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RelatedDrugs for TNC

Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for TNC

Diseases associated with this gene. (DisGeNet 4.0)

Gene	Disease ID	Disease name	# pubmeds	Source
TNC	C0004096	Asthma	1	CTD_human
TNC	C0014175	Endometriosis	1	CTD_human
TNC	C0025202	melanoma	1	CTD_human
TNC	C0032226	Pleural Diseases	1	CTD_human
TNC	C0042345	Varicosity	1	CTD_human
TNC	C0273115	Lung Injury	1	CTD_human
TNC	C3810170	DEAFNESS, AUTOSOMAL DOMINANT 56	1	UNIPROT

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