| Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
| exon_skip_358913 | 21 | 17102495:17102757:17135209:17135287:17138315:17138460 | 17135209:17135287 | ENSG00000155313.11 | ENST00000400183.2,ENST00000351097.5,ENST00000285681.2 |
| exon_skip_358920 | 21 | 17138320:17138460:17150222:17150346:17163820:17163983 | 17150222:17150346 | ENSG00000155313.11 | ENST00000400183.2,ENST00000285679.6,ENST00000351097.5,ENST00000285681.2 |
| exon_skip_358928 | 21 | 17163822:17163983:17172075:17172162:17177439:17177577 | 17172075:17172162 | ENSG00000155313.11 | ENST00000547201.1,ENST00000400183.2,ENST00000285679.6,ENST00000351097.5,ENST00000285681.2,ENST00000549362.1 |
| exon_skip_358929 | 21 | 17177439:17177577:17181127:17181204:17183455:17183529 | 17181127:17181204 | ENSG00000155313.11 | ENST00000547201.1,ENST00000400183.2,ENST00000285679.6,ENST00000285681.2 |
| exon_skip_358937 | 21 | 17191016:17191165:17196357:17196485:17197284:17197380 | 17196357:17196485 | ENSG00000155313.11 | ENST00000400183.2,ENST00000285679.6,ENST00000285681.2 |
| exon_skip_358939 | 21 | 17197328:17197380:17198522:17198684:17199295:17199522 | 17198522:17198684 | ENSG00000155313.11 | ENST00000400183.2,ENST00000285679.6,ENST00000285681.2 |
| exon_skip_358941 | 21 | 17199295:17199522:17202849:17202920:17203719:17203948 | 17202849:17202920 | ENSG00000155313.11 | ENST00000453553.1,ENST00000400183.2,ENST00000285679.6,ENST00000285681.2 |
| exon_skip_358947 | 21 | 17203719:17203948:17205666:17205867:17214716:17214859 | 17205666:17205867 | ENSG00000155313.11 | ENST00000400183.2,ENST00000285679.6,ENST00000285681.2 |
| exon_skip_358953 | 21 | 17205666:17205867:17214716:17214859:17236586:17236765 | 17214716:17214859 | ENSG00000155313.11 | ENST00000285679.6 |
| exon_skip_358955 | 21 | 17214836:17214859:17219981:17220095:17222095:17222191 | 17219981:17220095 | ENSG00000155313.11 | ENST00000400183.2,ENST00000449491.1 |
| exon_skip_358958 | 21 | 17214836:17214859:17222095:17222191:17236586:17236765 | 17222095:17222191 | ENSG00000155313.11 | ENST00000285681.2 |
| exon_skip_358960 | 21 | 17214836:17214859:17236586:17236765:17238584:17238663 | 17236586:17236765 | ENSG00000155313.11 | ENST00000285679.6 |
| exon_skip_358961 | 21 | 17219981:17220095:17222095:17222191:17236586:17236765 | 17222095:17222191 | ENSG00000155313.11 | ENST00000400183.2,ENST00000449491.1 |
| exon_skip_358963 | 21 | 17242386:17242466:17246721:17246845:17250114:17250310 | 17246721:17246845 | ENSG00000155313.11 | ENST00000400183.2,ENST00000285679.6,ENST00000351097.5,ENST00000285681.2 |
| Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
| exon_skip_358913 | 21 | 17102495:17102757:17135209:17135287:17138315:17138460 | 17135209:17135287 | ENSG00000155313.11 | ENST00000351097.5,ENST00000285681.2,ENST00000400183.2 |
| exon_skip_358920 | 21 | 17138320:17138460:17150222:17150346:17163820:17163983 | 17150222:17150346 | ENSG00000155313.11 | ENST00000285679.6,ENST00000351097.5,ENST00000285681.2,ENST00000400183.2 |
| exon_skip_358928 | 21 | 17163822:17163983:17172075:17172162:17177439:17177577 | 17172075:17172162 | ENSG00000155313.11 | ENST00000285679.6,ENST00000351097.5,ENST00000285681.2,ENST00000400183.2,ENST00000547201.1,ENST00000549362.1 |
| exon_skip_358929 | 21 | 17177439:17177577:17181127:17181204:17183455:17183529 | 17181127:17181204 | ENSG00000155313.11 | ENST00000285679.6,ENST00000285681.2,ENST00000400183.2,ENST00000547201.1 |
| exon_skip_358937 | 21 | 17191016:17191165:17196357:17196485:17197284:17197380 | 17196357:17196485 | ENSG00000155313.11 | ENST00000285679.6,ENST00000285681.2,ENST00000400183.2 |
| exon_skip_358939 | 21 | 17197328:17197380:17198522:17198684:17199295:17199522 | 17198522:17198684 | ENSG00000155313.11 | ENST00000285679.6,ENST00000285681.2,ENST00000400183.2 |
| exon_skip_358941 | 21 | 17199295:17199522:17202849:17202920:17203719:17203948 | 17202849:17202920 | ENSG00000155313.11 | ENST00000285679.6,ENST00000285681.2,ENST00000400183.2,ENST00000453553.1 |
| exon_skip_358947 | 21 | 17203719:17203948:17205666:17205867:17214716:17214859 | 17205666:17205867 | ENSG00000155313.11 | ENST00000285679.6,ENST00000285681.2,ENST00000400183.2 |
| exon_skip_358953 | 21 | 17205666:17205867:17214716:17214859:17236586:17236765 | 17214716:17214859 | ENSG00000155313.11 | ENST00000285679.6 |
| exon_skip_358955 | 21 | 17214836:17214859:17219981:17220095:17222095:17222191 | 17219981:17220095 | ENSG00000155313.11 | ENST00000400183.2,ENST00000449491.1 |
| exon_skip_358958 | 21 | 17214836:17214859:17222095:17222191:17236586:17236765 | 17222095:17222191 | ENSG00000155313.11 | ENST00000285681.2 |
| exon_skip_358960 | 21 | 17214836:17214859:17236586:17236765:17238584:17238663 | 17236586:17236765 | ENSG00000155313.11 | ENST00000285679.6 |
| exon_skip_358961 | 21 | 17219981:17220095:17222095:17222191:17236586:17236765 | 17222095:17222191 | ENSG00000155313.11 | ENST00000400183.2,ENST00000449491.1 |
| exon_skip_358963 | 21 | 17242386:17242466:17246721:17246845:17250114:17250310 | 17246721:17246845 | ENSG00000155313.11 | ENST00000285679.6,ENST00000351097.5,ENST00000285681.2,ENST00000400183.2 |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
| Q9UHP3 | 15 | 41 | 1 | 1055 | Chain | ID=PRO_0000080653;Note=Ubiquitin carboxyl-terminal hydrolase 25 |
| Q9UHP3 | 15 | 41 | 14 | 57 | Domain | Note=UBA-like |
| Q9UHP3 | 15 | 41 | 12 | 27 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2MUX |
| Q9UHP3 | 15 | 41 | 33 | 43 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2MUX |
| Q9UHP3 | 185 | 214 | 1 | 1055 | Chain | ID=PRO_0000080653;Note=Ubiquitin carboxyl-terminal hydrolase 25 |
| Q9UHP3 | 185 | 214 | 169 | 657 | Domain | Note=USP |
| Q9UHP3 | 435 | 488 | 1 | 1055 | Chain | ID=PRO_0000080653;Note=Ubiquitin carboxyl-terminal hydrolase 25 |
| Q9UHP3 | 435 | 488 | 169 | 657 | Domain | Note=USP |
| Q9UHP3 | 664 | 731 | 1 | 1055 | Chain | ID=PRO_0000080653;Note=Ubiquitin carboxyl-terminal hydrolase 25 |
| Q9UHP3 | 664 | 731 | 684 | 717 | Coiled coil | Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| Q9UHP3 | 779 | 811 | 779 | 779 | Alternative sequence | ID=VSP_039632;Note=In isoform USP25b. S->SIMMTPNMQGIIMAIGKSRSVYDRCGPEAGFFK;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:10644437;Dbxref=PMID:10644437 |
| Q9UHP3 | 779 | 811 | 779 | 779 | Alternative sequence | ID=VSP_039631;Note=In isoform USP25m. S->SKPENTTSQPLSNQRVVEVAIPHVGKFMIESKEGGYDDEIMMTPNMQGIIMAIGKSRSVYDRCGPEAGFFK;Ontology_term=ECO:0000303;evidence=ECO:0000303|Ref.3 |
| Q9UHP3 | 779 | 811 | 1 | 1055 | Chain | ID=PRO_0000080653;Note=Ubiquitin carboxyl-terminal hydrolase 25 |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
| Q9UHP3 | 15 | 41 | 1 | 1055 | Chain | ID=PRO_0000080653;Note=Ubiquitin carboxyl-terminal hydrolase 25 |
| Q9UHP3 | 15 | 41 | 14 | 57 | Domain | Note=UBA-like |
| Q9UHP3 | 15 | 41 | 12 | 27 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2MUX |
| Q9UHP3 | 15 | 41 | 33 | 43 | Helix | Ontology_term=ECO:0000244;evidence=ECO:0000244|PDB:2MUX |
| Q9UHP3 | 185 | 214 | 1 | 1055 | Chain | ID=PRO_0000080653;Note=Ubiquitin carboxyl-terminal hydrolase 25 |
| Q9UHP3 | 185 | 214 | 169 | 657 | Domain | Note=USP |
| Q9UHP3 | 435 | 488 | 1 | 1055 | Chain | ID=PRO_0000080653;Note=Ubiquitin carboxyl-terminal hydrolase 25 |
| Q9UHP3 | 435 | 488 | 169 | 657 | Domain | Note=USP |
| Q9UHP3 | 664 | 731 | 1 | 1055 | Chain | ID=PRO_0000080653;Note=Ubiquitin carboxyl-terminal hydrolase 25 |
| Q9UHP3 | 664 | 731 | 684 | 717 | Coiled coil | Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| Q9UHP3 | 779 | 811 | 779 | 779 | Alternative sequence | ID=VSP_039632;Note=In isoform USP25b. S->SIMMTPNMQGIIMAIGKSRSVYDRCGPEAGFFK;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:10644437;Dbxref=PMID:10644437 |
| Q9UHP3 | 779 | 811 | 779 | 779 | Alternative sequence | ID=VSP_039631;Note=In isoform USP25m. S->SKPENTTSQPLSNQRVVEVAIPHVGKFMIESKEGGYDDEIMMTPNMQGIIMAIGKSRSVYDRCGPEAGFFK;Ontology_term=ECO:0000303;evidence=ECO:0000303|Ref.3 |
| Q9UHP3 | 779 | 811 | 1 | 1055 | Chain | ID=PRO_0000080653;Note=Ubiquitin carboxyl-terminal hydrolase 25 |
| Depth of coverage in three exons | Mutation description |
 | Sample: TCGA-F5-6814-01 |
| Cancer type: READ |
| ESID: exon_skip_358963 |
| Skipped exon start: 17246722 |
| Skipped exon end: 17246845 |
| Mutation start: 17246810 |
| Mutation end: 17246810 |
| Mutation type: Nonsense_Mutation |
| Reference seq: G |
| Mutation seq: T |
| AAchange: p.E922X |
exon_skip_104037_READ_TCGA-F5-6814-01.png
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exon_skip_142374_READ_TCGA-F5-6814-01.png
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exon_skip_296525_READ_TCGA-F5-6814-01.png
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exon_skip_358963_READ_TCGA-F5-6814-01.png
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exon_skip_428765_READ_TCGA-F5-6814-01.png
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exon_skip_43545_READ_TCGA-F5-6814-01.png
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exon_skip_497224_READ_TCGA-F5-6814-01.png
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| Sample | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
| BICR18_UPPER_AERODIGESTIVE_TRACT | 17246722 | 17246845 | 17246788 | 17246789 | Frame_Shift_Del | CT | - | p.L915fs |
| DBTRG05MG_CENTRAL_NERVOUS_SYSTEM | 17236587 | 17236765 | 17236670 | 17236671 | In_Frame_Ins | - | GTG | p.808_808V>VV |
| UMCHOR1_BONE | 17135210 | 17135287 | 17135220 | 17135220 | Missense_Mutation | C | A | p.T19K |
| HEC251_ENDOMETRIUM | 17135210 | 17135287 | 17135256 | 17135256 | Missense_Mutation | A | C | p.N31T |
| KYSE520_OESOPHAGUS | 17135210 | 17135287 | 17135275 | 17135275 | Missense_Mutation | G | T | p.Q37H |
| NCIH1651_LUNG | 17150223 | 17150346 | 17150234 | 17150234 | Missense_Mutation | C | T | p.L94F |
| HEC6_ENDOMETRIUM | 17150223 | 17150346 | 17150288 | 17150288 | Missense_Mutation | G | A | p.E112K |
| SUPHD1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 17172076 | 17172162 | 17172148 | 17172148 | Missense_Mutation | C | A | p.P210T |
| SNU81_LARGE_INTESTINE | 17172076 | 17172162 | 17172152 | 17172152 | Missense_Mutation | G | A | p.R211Q |
| SNU81_LARGE_INTESTINE | 17181128 | 17181204 | 17181161 | 17181161 | Missense_Mutation | G | T | p.D272Y |
| 22RV1_PROSTATE | 17181128 | 17181204 | 17181199 | 17181199 | Missense_Mutation | G | T | p.E284D |
| DU145_PROSTATE | 17196358 | 17196485 | 17196389 | 17196389 | Missense_Mutation | C | T | p.T371I |
| JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 17196358 | 17196485 | 17196464 | 17196464 | Missense_Mutation | C | G | p.P396R |
| SKMEL1_SKIN | 17198523 | 17198684 | 17198531 | 17198531 | Missense_Mutation | G | C | p.S438T |
| HCC2450_LUNG | 17198523 | 17198684 | 17198572 | 17198572 | Missense_Mutation | C | T | p.L452F |
| CORL95_LUNG | 17198523 | 17198684 | 17198576 | 17198576 | Missense_Mutation | A | G | p.Q453R |
| PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 17198523 | 17198684 | 17198615 | 17198615 | Missense_Mutation | C | G | p.T466S |
| HT115_LARGE_INTESTINE | 17202850 | 17202920 | 17202880 | 17202880 | Missense_Mutation | G | A | p.R575Q |
| SNU1040_LARGE_INTESTINE | 17202850 | 17202920 | 17202880 | 17202880 | Missense_Mutation | G | A | p.R575Q |
| BCPAP_THYROID | 17202850 | 17202920 | 17202894 | 17202894 | Missense_Mutation | A | G | p.M580V |
| MZ1PC_PANCREAS | 17205667 | 17205867 | 17205696 | 17205696 | Missense_Mutation | C | T | p.L675F |
| KOSC2_UPPER_AERODIGESTIVE_TRACT | 17205667 | 17205867 | 17205826 | 17205826 | Missense_Mutation | C | T | p.A718V |
| NKL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 17205667 | 17205867 | 17205862 | 17205862 | Missense_Mutation | C | T | p.T730I |
| SW756_CERVIX | 17214717 | 17214859 | 17214762 | 17214762 | Missense_Mutation | G | A | p.S747N |
| SNU1040_LARGE_INTESTINE | 17214717 | 17214859 | 17214822 | 17214822 | Missense_Mutation | A | G | p.E767G |
| GAK_SKIN | 17214717 | 17214859 | 17214840 | 17214840 | Missense_Mutation | C | T | p.P773L |
| HN_UPPER_AERODIGESTIVE_TRACT | 17214717 | 17214859 | 17214840 | 17214840 | Missense_Mutation | C | T | p.P773L |
| RKO_LARGE_INTESTINE | 17236587 | 17236765 | 17236737 | 17236737 | Missense_Mutation | G | C | p.G830R |
| NCIH2291_LUNG | 17246722 | 17246845 | 17246822 | 17246822 | Missense_Mutation | C | T | p.H926Y |
| HEC251_ENDOMETRIUM | 17135210 | 17135287 | 17135240 | 17135240 | Nonsense_Mutation | G | T | p.E26* |
| SH4_SKIN | 17196358 | 17196485 | 17196465 | 17196466 | Nonsense_Mutation | CC | TT | p.Q397* |
| SNU81_LARGE_INTESTINE | 17205667 | 17205867 | 17205681 | 17205681 | Nonsense_Mutation | G | T | p.E670* |
| EVSAT_BREAST | 17214717 | 17214859 | 17214827 | 17214827 | Nonsense_Mutation | G | T | p.E769* |
| CP50EBV_MATCHED_NORMAL_TISSUE | 17202850 | 17202920 | 17202920 | 17202920 | Splice_Site | A | G | p.Q588Q |
| CP50MELB_SKIN | 17202850 | 17202920 | 17202920 | 17202920 | Splice_Site | A | G | p.Q588Q |