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| Open reading frame (ORF) annotation in the exon skipping event |
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| Splicing Quantitative Trait Loci (sQTLs) in the skipped exons |
| Splicing Quantitative Trait Methylation (sQTM) in the skipped exon |
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Gene summary for ATRNL1 |
 Gene summary |
| Gene information | Gene symbol | ATRNL1 | Gene ID | 26033 |
| Gene name | attractin like 1 | |
| Synonyms | ALP|bA338L11.1|bA454H24.1 | |
| Cytomap | 10q25.3 | |
| Type of gene | protein-coding | |
| Description | attractin-like protein 1 | |
| Modification date | 20180519 | |
| UniProtAcc | Q5VV63 | |
| Context | PubMed: ATRNL1 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract] - Title (PMID) |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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Exon skipping events across known transcript of Ensembl for ATRNL1 from UCSC genome browser |
| Skipped exons in TCGA and GTEx based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Gene isoform structures and expression levels for ATRNL1 |
| Expression levels of gene isoforms across TCGA. |
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| Expression levels of gene isoforms across GTEx. |
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Exon skipping events with PSIs in TCGA for ATRNL1 |
| Information of exkip skipping event in TCGA. |
| Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
| exon_skip_45265 | 10 | 116887356:116887485:116888170:116888272:116889088:116889297 | 116888170:116888272 | ENSG00000107518.12 | ENST00000485327.2 |
| exon_skip_45266 | 10 | 116919800:116919975:116925317:116925405:116930794:116931050 | 116925317:116925405 | ENSG00000107518.12 | ENST00000485327.2,ENST00000529665.1,ENST00000355044.3 |
| exon_skip_45267 | 10 | 116925317:116925405:116930794:116931050:116975454:116975638 | 116930794:116931050 | ENSG00000107518.12 | ENST00000355044.3 |
| exon_skip_45268 | 10 | 116975454:116975638:117001359:117001514:117024669:117024754 | 117001359:117001514 | ENSG00000107518.12 | ENST00000355044.3 |
| exon_skip_45270 | 10 | 117027802:117027921:117040864:117040997:117045725:117045907 | 117040864:117040997 | ENSG00000107518.12 | ENST00000355044.3 |
| exon_skip_45271 | 10 | 117061482:117061553:117075027:117075246:117093791:117093929 | 117075027:117075246 | ENSG00000107518.12 | ENST00000355044.3 |
| exon_skip_45272 | 10 | 117075027:117075246:117093791:117093929:117154168:117154262 | 117093791:117093929 | ENSG00000107518.12 | ENST00000355044.3 |
| exon_skip_45273 | 10 | 117228681:117228839:117278772:117278834:117308967:117309037 | 117278772:117278834 | ENSG00000107518.12 | ENST00000423111.2,ENST00000424738.1,ENST00000355044.3 |
| exon_skip_45274 | 10 | 117308967:117309046:117486757:117486865:117607387:117607502 | 117486757:117486865 | ENSG00000107518.12 | ENST00000423111.2,ENST00000355044.3,ENST00000303745.7 |
| exon_skip_45275 | 10 | 117486757:117486865:117607387:117607502:117704168:117704470 | 117607387:117607502 | ENSG00000107518.12 | ENST00000423111.2,ENST00000355044.3,ENST00000303745.7 |
| PSI values of skipped exons in TCGA. |
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Exon skipping events with PSIs in GTEx for ATRNL1 |
| Information of exkip skipping event in GTEx |
| Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
| exon_skip_45265 | 10 | 116887356:116887485:116888170:116888272:116889088:116889297 | 116888170:116888272 | ENSG00000107518.12 | ENST00000485327.2 |
| exon_skip_45266 | 10 | 116919800:116919975:116925317:116925405:116930794:116931050 | 116925317:116925405 | ENSG00000107518.12 | ENST00000485327.2,ENST00000529665.1,ENST00000355044.3 |
| exon_skip_45267 | 10 | 116925317:116925405:116930794:116931050:116975454:116975638 | 116930794:116931050 | ENSG00000107518.12 | ENST00000355044.3 |
| exon_skip_45268 | 10 | 116975454:116975638:117001359:117001514:117024669:117024754 | 117001359:117001514 | ENSG00000107518.12 | ENST00000355044.3 |
| exon_skip_45270 | 10 | 117027802:117027921:117040864:117040997:117045725:117045907 | 117040864:117040997 | ENSG00000107518.12 | ENST00000355044.3 |
| exon_skip_45271 | 10 | 117061482:117061553:117075027:117075246:117093791:117093929 | 117075027:117075246 | ENSG00000107518.12 | ENST00000355044.3 |
| exon_skip_45272 | 10 | 117075027:117075246:117093791:117093929:117154168:117154262 | 117093791:117093929 | ENSG00000107518.12 | ENST00000355044.3 |
| exon_skip_45273 | 10 | 117228681:117228839:117278772:117278834:117308967:117309037 | 117278772:117278834 | ENSG00000107518.12 | ENST00000355044.3,ENST00000423111.2,ENST00000424738.1 |
| exon_skip_45274 | 10 | 117308967:117309046:117486757:117486865:117607387:117607502 | 117486757:117486865 | ENSG00000107518.12 | ENST00000355044.3,ENST00000423111.2,ENST00000303745.7 |
| exon_skip_45275 | 10 | 117486757:117486865:117607387:117607502:117704168:117704470 | 117607387:117607502 | ENSG00000107518.12 | ENST00000355044.3,ENST00000423111.2,ENST00000303745.7 |
| PSI values of skipped exons in GTEx. |
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| * Skipped exon sequences. |
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Open reading frame (ORF) annotation in the exon skipping event for ATRNL1 |
| Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms. |
| ENST | Start of skipped exon | End of skipped exon | ORF |
| ENST00000355044 | 116925317 | 116925405 | Frame-shift |
| ENST00000355044 | 116930794 | 116931050 | Frame-shift |
| ENST00000355044 | 117001359 | 117001514 | Frame-shift |
| ENST00000355044 | 117040864 | 117040997 | Frame-shift |
| ENST00000355044 | 117278772 | 117278834 | Frame-shift |
| ENST00000355044 | 117607387 | 117607502 | Frame-shift |
| ENST00000355044 | 117075027 | 117075246 | In-frame |
| ENST00000355044 | 117093791 | 117093929 | In-frame |
| ENST00000355044 | 117486757 | 117486865 | In-frame |
| Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms. |
| ENST | Start of skipped exon | End of skipped exon | ORF |
| ENST00000355044 | 116925317 | 116925405 | Frame-shift |
| ENST00000355044 | 116930794 | 116931050 | Frame-shift |
| ENST00000355044 | 117001359 | 117001514 | Frame-shift |
| ENST00000355044 | 117040864 | 117040997 | Frame-shift |
| ENST00000355044 | 117278772 | 117278834 | Frame-shift |
| ENST00000355044 | 117607387 | 117607502 | Frame-shift |
| ENST00000355044 | 117075027 | 117075246 | In-frame |
| ENST00000355044 | 117093791 | 117093929 | In-frame |
| ENST00000355044 | 117486757 | 117486865 | In-frame |
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Infer the effects of exon skipping event on protein functional features for ATRNL1 |
| Exon skipping at the protein sequence level and followed lost functional features. * Click on the image to enlarge it in a new window. |
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| Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases. |
| ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
| ENST00000355044 | 8496 | 1379 | 117075027 | 117075246 | 2945 | 3163 | 939 | 1012 |
| ENST00000355044 | 8496 | 1379 | 117093791 | 117093929 | 3164 | 3301 | 1012 | 1058 |
| ENST00000355044 | 8496 | 1379 | 117486757 | 117486865 | 3922 | 4029 | 1265 | 1301 |
| Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases. |
| ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
| ENST00000355044 | 8496 | 1379 | 117075027 | 117075246 | 2945 | 3163 | 939 | 1012 |
| ENST00000355044 | 8496 | 1379 | 117093791 | 117093929 | 3164 | 3301 | 1012 | 1058 |
| ENST00000355044 | 8496 | 1379 | 117486757 | 117486865 | 3922 | 4029 | 1265 | 1301 |
| Lost protein functional features of individual exon skipping events in TCGA. |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
| Q5VV63 | 939 | 1012 | 468 | 1379 | Alternative sequence | ID=VSP_033719;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334 |
| Q5VV63 | 939 | 1012 | 53 | 1379 | Chain | ID=PRO_0000334650;Note=Attractin-like protein 1 |
| Q5VV63 | 939 | 1012 | 889 | 939 | Domain | Note=PSI 4 |
| Q5VV63 | 939 | 1012 | 942 | 1012 | Domain | Note=PSI 5 |
| Q5VV63 | 939 | 1012 | 989 | 989 | Natural variant | ID=VAR_043446;Note=S->N;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:14702039,ECO:0000269|PubMed:9628581;Dbxref=dbSNP:rs1953758,PMID:14702039,PMID:9628581 |
| Q5VV63 | 939 | 1012 | 53 | 1230 | Topological domain | Note=Extracellular;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| Q5VV63 | 1012 | 1058 | 468 | 1379 | Alternative sequence | ID=VSP_033719;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334 |
| Q5VV63 | 1012 | 1058 | 53 | 1379 | Chain | ID=PRO_0000334650;Note=Attractin-like protein 1 |
| Q5VV63 | 1012 | 1058 | 1014 | 1022 | Disulfide bond | Ontology_term=ECO:0000250;evidence=ECO:0000250 |
| Q5VV63 | 1012 | 1058 | 1016 | 1028 | Disulfide bond | Ontology_term=ECO:0000250;evidence=ECO:0000250 |
| Q5VV63 | 1012 | 1058 | 1031 | 1040 | Disulfide bond | Ontology_term=ECO:0000250;evidence=ECO:0000250 |
| Q5VV63 | 1012 | 1058 | 1043 | 1057 | Disulfide bond | Ontology_term=ECO:0000250;evidence=ECO:0000250 |
| Q5VV63 | 1012 | 1058 | 942 | 1012 | Domain | Note=PSI 5 |
| Q5VV63 | 1012 | 1058 | 1014 | 1059 | Domain | Note=Laminin EGF-like 1;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00460 |
| Q5VV63 | 1012 | 1058 | 53 | 1230 | Topological domain | Note=Extracellular;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| Q5VV63 | 1265 | 1301 | 468 | 1379 | Alternative sequence | ID=VSP_033719;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334 |
| Q5VV63 | 1265 | 1301 | 53 | 1379 | Chain | ID=PRO_0000334650;Note=Attractin-like protein 1 |
| Q5VV63 | 1265 | 1301 | 1252 | 1379 | Topological domain | Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| Lost protein functional features of individual exon skipping events in GTEx. |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
| Q5VV63 | 939 | 1012 | 468 | 1379 | Alternative sequence | ID=VSP_033719;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334 |
| Q5VV63 | 939 | 1012 | 53 | 1379 | Chain | ID=PRO_0000334650;Note=Attractin-like protein 1 |
| Q5VV63 | 939 | 1012 | 889 | 939 | Domain | Note=PSI 4 |
| Q5VV63 | 939 | 1012 | 942 | 1012 | Domain | Note=PSI 5 |
| Q5VV63 | 939 | 1012 | 989 | 989 | Natural variant | ID=VAR_043446;Note=S->N;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:14702039,ECO:0000269|PubMed:9628581;Dbxref=dbSNP:rs1953758,PMID:14702039,PMID:9628581 |
| Q5VV63 | 939 | 1012 | 53 | 1230 | Topological domain | Note=Extracellular;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| Q5VV63 | 1012 | 1058 | 468 | 1379 | Alternative sequence | ID=VSP_033719;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334 |
| Q5VV63 | 1012 | 1058 | 53 | 1379 | Chain | ID=PRO_0000334650;Note=Attractin-like protein 1 |
| Q5VV63 | 1012 | 1058 | 1014 | 1022 | Disulfide bond | Ontology_term=ECO:0000250;evidence=ECO:0000250 |
| Q5VV63 | 1012 | 1058 | 1016 | 1028 | Disulfide bond | Ontology_term=ECO:0000250;evidence=ECO:0000250 |
| Q5VV63 | 1012 | 1058 | 1031 | 1040 | Disulfide bond | Ontology_term=ECO:0000250;evidence=ECO:0000250 |
| Q5VV63 | 1012 | 1058 | 1043 | 1057 | Disulfide bond | Ontology_term=ECO:0000250;evidence=ECO:0000250 |
| Q5VV63 | 1012 | 1058 | 942 | 1012 | Domain | Note=PSI 5 |
| Q5VV63 | 1012 | 1058 | 1014 | 1059 | Domain | Note=Laminin EGF-like 1;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00460 |
| Q5VV63 | 1012 | 1058 | 53 | 1230 | Topological domain | Note=Extracellular;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
| Q5VV63 | 1265 | 1301 | 468 | 1379 | Alternative sequence | ID=VSP_033719;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334 |
| Q5VV63 | 1265 | 1301 | 53 | 1379 | Chain | ID=PRO_0000334650;Note=Attractin-like protein 1 |
| Q5VV63 | 1265 | 1301 | 1252 | 1379 | Topological domain | Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255 |
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SNVs in the skipped exons for ATRNL1 |
| - Lollipop plot for presenting exon skipping associated SNVs. * Click on the image to enlarge it in a new window. |
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| - Differential PSIs between mutated versus non-mutated samples. |
| - Non-synonymous mutations located in the skipped exons in TCGA. |
| Cancer type | Sample | ESID | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
| STAD | TCGA-BR-6852-01 | exon_skip_45267 | 116930795 | 116931050 | 116930893 | 116930893 | Frame_Shift_Del | A | - | p.T397fs |
| LIHC | TCGA-DD-A1EG-01 | exon_skip_45273 | 117278773 | 117278834 | 117278815 | 117278815 | Frame_Shift_Del | T | - | p.F1234fs |
| LIHC | TCGA-DD-A39Y-01 | exon_skip_45273 | 117278773 | 117278834 | 117278815 | 117278815 | Frame_Shift_Del | T | - | p.F1234fs |
| LIHC | TCGA-DD-A3A0-01 | exon_skip_45273 | 117278773 | 117278834 | 117278815 | 117278815 | Frame_Shift_Del | T | - | p.F1234fs |
| LIHC | TCGA-G3-A3CJ-01 | exon_skip_45273 | 117278773 | 117278834 | 117278815 | 117278815 | Frame_Shift_Del | T | - | p.F1234fs |
| ESCA | TCGA-L5-A8NM-01 | exon_skip_45274 | 117486758 | 117486865 | 117486834 | 117486837 | Frame_Shift_Del | AACA | - | p.1291_1292del |
| ESCA | TCGA-L5-A8NM-01 | exon_skip_45274 | 117486758 | 117486865 | 117486834 | 117486837 | Frame_Shift_Del | AACA | - | p.EQ1291fs |
| ESCA | TCGA-L5-A8NM-01 | exon_skip_45274 | 117486758 | 117486865 | 117486834 | 117486837 | Frame_Shift_Del | AACA | - | p.T1293fs |
| STAD | TCGA-CG-5721-01 | exon_skip_45267 | 116930795 | 116931050 | 116930924 | 116930924 | Nonsense_Mutation | C | T | p.Q408* |
| LUAD | TCGA-64-1676-01 | exon_skip_45267 | 116930795 | 116931050 | 116930936 | 116930936 | Nonsense_Mutation | G | A | p.W382* |
| LGG | TCGA-DU-6392-01 | exon_skip_45270 | 117040865 | 117040997 | 117040979 | 117040979 | Nonsense_Mutation | G | T | p.E739* |
| ESCA | TCGA-LN-A4A3-01 | exon_skip_45271 | 117075028 | 117075246 | 117075177 | 117075177 | Nonsense_Mutation | G | T | p.E990* |
| ESCA | TCGA-LN-A4A3-01 | exon_skip_45271 | 117075028 | 117075246 | 117075177 | 117075177 | Nonsense_Mutation | G | T | p.E990X |
| SKCM | TCGA-GN-A8LK-06 | exon_skip_45271 | 117075028 | 117075246 | 117075237 | 117075237 | Nonsense_Mutation | C | T | p.Q1010* |
| HNSC | TCGA-CN-4727-01 | exon_skip_45274 | 117486758 | 117486865 | 117486770 | 117486770 | Nonsense_Mutation | G | T | p.E1270* |
| STAD | TCGA-B7-A5TI-01 | exon_skip_45274 | 117486758 | 117486865 | 117486773 | 117486773 | Nonsense_Mutation | C | T | p.R1271* |
| STAD | TCGA-B7-A5TI-01 | exon_skip_45274 | 117486758 | 117486865 | 117486773 | 117486773 | Nonsense_Mutation | C | T | p.R1271X |
| COAD | TCGA-D5-6928-01 | exon_skip_45267 | 116930795 | 116931050 | 116931051 | 116931051 | Splice_Site | G | A | . |
| LUAD | TCGA-55-7724-01 | exon_skip_45268 | 117001360 | 117001514 | 117001358 | 117001358 | Splice_Site | A | G | p.W511_splice |
| SKCM | TCGA-EE-A2A5-06 | exon_skip_45273 | 117278773 | 117278834 | 117278772 | 117278772 | Splice_Site | G | A | . |
| LUAD | TCGA-69-7980-01 | exon_skip_45275 | 117607388 | 117607502 | 117607386 | 117607386 | Splice_Site | A | T | p.G1302_splice |
| - Depth of coverage in the three exons composing exon skipping event |
| Depth of coverage in three exons | Mutation description |
| - Non-synonymous mutations located in the skipped exons in CCLE. |
| Sample | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
| HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 117607388 | 117607502 | 117607487 | 117607487 | Frame_Shift_Del | C | - | p.P1336fs |
| UMUC3_URINARY_TRACT | 117278773 | 117278834 | 117278814 | 117278815 | Frame_Shift_Ins | - | T | p.F1233fs |
| EVSAT_BREAST | 116925318 | 116925405 | 116925370 | 116925370 | Missense_Mutation | C | G | p.L353V |
| HEC251_ENDOMETRIUM | 116930795 | 116931050 | 116930809 | 116930809 | Missense_Mutation | G | T | p.M369I |
| M14_SKIN | 116930795 | 116931050 | 116930864 | 116930864 | Missense_Mutation | T | G | p.F388V |
| MDAMB435S_SKIN | 116930795 | 116931050 | 116930864 | 116930864 | Missense_Mutation | T | G | p.F388V |
| MEWO_SKIN | 116930795 | 116931050 | 116930866 | 116930866 | Missense_Mutation | T | A | p.F388L |
| SNU81_LARGE_INTESTINE | 116930795 | 116931050 | 116930896 | 116930896 | Missense_Mutation | A | C | p.K398N |
| HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 116930795 | 116931050 | 116930927 | 116930927 | Missense_Mutation | T | C | p.Y409H |
| CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 117001360 | 117001514 | 117001382 | 117001382 | Missense_Mutation | T | G | p.F519V |
| HCC1395_BREAST | 117001360 | 117001514 | 117001419 | 117001419 | Missense_Mutation | G | A | p.G531E |
| SNU81_LARGE_INTESTINE | 117001360 | 117001514 | 117001437 | 117001438 | Missense_Mutation | GA | TT | p.G537V |
| HS172T_FIBROBLAST | 117040865 | 117040997 | 117040877 | 117040877 | Missense_Mutation | T | C | p.Y705H |
| CORL32_LUNG | 117040865 | 117040997 | 117040892 | 117040892 | Missense_Mutation | G | A | p.V710M |
| CW2_LARGE_INTESTINE | 117040865 | 117040997 | 117040926 | 117040926 | Missense_Mutation | G | A | p.S721N |
| NH12_AUTONOMIC_GANGLIA | 117040865 | 117040997 | 117040956 | 117040956 | Missense_Mutation | G | A | p.C731Y |
| NCIH2087_LUNG | 117040865 | 117040997 | 117040994 | 117040994 | Missense_Mutation | C | T | p.P744S |
| BC3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 117075028 | 117075246 | 117075047 | 117075047 | Missense_Mutation | G | C | p.L946F |
| NCIH2135_LUNG | 117075028 | 117075246 | 117075065 | 117075065 | Missense_Mutation | T | G | p.C952W |
| HS746T_STOMACH | 117075028 | 117075246 | 117075096 | 117075096 | Missense_Mutation | G | A | p.D963N |
| WM278_SKIN | 117075028 | 117075246 | 117075096 | 117075096 | Missense_Mutation | G | A | p.D963N |
| JHUEM7_ENDOMETRIUM | 117075028 | 117075246 | 117075152 | 117075152 | Missense_Mutation | G | T | p.M981I |
| MEWO_SKIN | 117075028 | 117075246 | 117075244 | 117075244 | Missense_Mutation | C | T | p.P1012L |
| LNCAPCLONEFGC_PROSTATE | 117093792 | 117093929 | 117093845 | 117093845 | Missense_Mutation | T | C | p.C1031R |
| FLO1_OESOPHAGUS | 117486758 | 117486865 | 117486774 | 117486774 | Missense_Mutation | G | A | p.R1271Q |
| A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 117486758 | 117486865 | 117486798 | 117486798 | Missense_Mutation | T | G | p.F1279C |
| DMS273_LUNG | 117486758 | 117486865 | 117486806 | 117486806 | Missense_Mutation | G | A | p.V1282I |
| LC1F_LUNG | 117607388 | 117607502 | 117607419 | 117607419 | Missense_Mutation | G | T | p.C1312F |
| LC1SQSF_LUNG | 117607388 | 117607502 | 117607419 | 117607419 | Missense_Mutation | G | T | p.C1312F |
| LC1SQ_LUNG | 117607388 | 117607502 | 117607419 | 117607419 | Missense_Mutation | G | T | p.C1312F |
| HT144_SKIN | 117607388 | 117607502 | 117607425 | 117607425 | Missense_Mutation | G | A | p.G1314E |
| 22RV1_PROSTATE | 116930795 | 116931050 | 116930860 | 116930860 | Nonsense_Mutation | G | A | p.W386* |
| NCIH209_LUNG | 116930795 | 116931050 | 116931043 | 116931043 | Nonsense_Mutation | C | A | p.Y447* |
| NCIH630_LARGE_INTESTINE | 117486758 | 117486865 | 117486773 | 117486773 | Nonsense_Mutation | C | T | p.R1271* |
| NCIH1339_LUNG | 116925318 | 116925405 | 116925404 | 116925404 | Splice_Site | A | T | p.Q364L |
| SNU1040_LARGE_INTESTINE | 117001360 | 117001514 | 117001514 | 117001514 | Splice_Site | G | T | p.A563S |
| LU135_LUNG | 117607388 | 117607502 | 117607502 | 117607502 | Splice_Site | G | C | p.G1340R |
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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for ATRNL1 |
| sQTL information located at the skipped exons. |
| Exon skip ID | Chromosome | Three exons | Skippped exon | ENST | Cancer type | SNP id | Location | DNA change (ref/var) | P-value |
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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for ATRNL1 |
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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for ATRNL1 |
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RelatedDrugs for ATRNL1 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ATRNL1 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
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