ExonSkipDB Logo

Home

Download

Statistics

Landscape

Help

Contact

Center for Computational Systems Medicine
leaf

Gene summary

leaf

Gene structures and expression levels

leaf

Exon skipping events with PSIs in TCGA

leaf

Exon skipping events with PSIs in GTEx

leaf

Open reading frame (ORF) annotation in the exon skipping event

leaf

Exon skipping events in the canonical protein sequence

leaf

SNVs in the skipped exons with depth of coverage

leaf

Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

leaf

Splicing Quantitative Trait Methylation (sQTM) in the skipped exon

leaf

Related drugs with this gene

leaf

Related diseases with this gene

Gene summary for MTO1

check button Gene summary
Gene informationGene symbol

MTO1

Gene ID

25821

Gene namemitochondrial tRNA translation optimization 1
SynonymsCGI-02|COXPD10
Cytomap

6q13

Type of geneprotein-coding
Descriptionprotein MTO1 homolog, mitochondrialhomolog of yeast Mto1mitochondrial MTO1-3mitochondrial translation optimization 1 homolog
Modification date20180523
UniProtAcc

Q9Y2Z2

ContextPubMed: MTO1 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract]
- Title (PMID)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

Top

Exon skipping events across known transcript of Ensembl for MTO1 from UCSC genome browser

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

Top

Gene isoform structures and expression levels for MTO1

check button Expression levels of gene isoforms across TCGA.
gencode gene structure

check button Expression levels of gene isoforms across GTEx.
gencode gene structure


Top

Exon skipping events with PSIs in TCGA for MTO1

check button Information of exkip skipping event in TCGA.
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_453090674171517:74171794:74175931:74176131:74176211:7417632974175931:74176131ENSG00000135297.11ENST00000370300.4,ENST00000498286.1,ENST00000415228.1,ENST00000370308.4,ENST00000462039.1
exon_skip_453092674176215:74176329:74181182:74181280:74183087:7418313474181182:74181280ENSG00000135297.11ENST00000521032.1
exon_skip_453093674176215:74176329:74183087:74183377:74189454:7418956774183087:74183377ENSG00000135297.11ENST00000415954.2,ENST00000370300.4,ENST00000498286.1,ENST00000370305.1,ENST00000370308.4
exon_skip_453095674189785:74189849:74190015:74190090:74190397:7419048574190015:74190090ENSG00000135297.11ENST00000370300.4,ENST00000370305.1
exon_skip_453096674189785:74189849:74190040:74190090:74190397:7419048574190040:74190090ENSG00000135297.11ENST00000520366.1
exon_skip_453097674190040:74190090:74190397:74190528:74192171:7419225774190397:74190528ENSG00000135297.11ENST00000524046.1
exon_skip_453099674190397:74190528:74190719:74190839:74191762:7419196774190719:74190839ENSG00000135297.11ENST00000415954.2
exon_skip_453102674190397:74190528:74190723:74190839:74191762:7419196774190723:74190839ENSG00000135297.11ENST00000445187.1
exon_skip_453104674190397:74190528:74191751:74191967:74192171:7419225774191751:74191967ENSG00000135297.11ENST00000462039.1
exon_skip_453106674190397:74190528:74191762:74191967:74192171:7419225774191762:74191967ENSG00000135297.11ENST00000370300.4,ENST00000498286.1,ENST00000415228.1,ENST00000370305.1,ENST00000370308.4
exon_skip_453108674190397:74190528:74192171:74192343:74201956:7420204874192171:74192343ENSG00000135297.11ENST00000524046.1
exon_skip_453110674190723:74190839:74191762:74191967:74192171:7419225774191762:74191967ENSG00000135297.11ENST00000415954.2,ENST00000445187.1
exon_skip_453111674191854:74191967:74192171:74192343:74196320:7419648474192171:74192343ENSG00000135297.11ENST00000523763.1
exon_skip_453112674191854:74191967:74192171:74192343:74201956:7420204874192171:74192343ENSG00000135297.11ENST00000415954.2,ENST00000370300.4,ENST00000498286.1,ENST00000415228.1,ENST00000370305.1,ENST00000370308.4,ENST00000521156.1,ENST00000462039.1
exon_skip_453114674192171:74192343:74196320:74196484:74201956:7420204874196320:74196484ENSG00000135297.11ENST00000523763.1
exon_skip_453115674192171:74192343:74201956:74202075:74207458:7420761974201956:74202075ENSG00000135297.11ENST00000415954.2,ENST00000370300.4,ENST00000498286.1,ENST00000415228.1,ENST00000370305.1,ENST00000370308.4,ENST00000462039.1
exon_skip_453116674192171:74192343:74201956:74202075:74210296:7421042474201956:74202075ENSG00000135297.11ENST00000521156.1
exon_skip_453118674201956:74202075:74207458:74207619:74210296:7421042474207458:74207619ENSG00000135297.11ENST00000415954.2,ENST00000370300.4,ENST00000498286.1,ENST00000415228.1,ENST00000370305.1,ENST00000370308.4,ENST00000462039.1

check button PSI values of skipped exons in TCGA.
psi tcga

Top

Exon skipping events with PSIs in GTEx for MTO1

check button Information of exkip skipping event in GTEx
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_453090674171517:74171794:74175931:74176131:74176211:7417632974175931:74176131ENSG00000135297.11ENST00000498286.1,ENST00000370308.4,ENST00000415228.1,ENST00000370300.4,ENST00000462039.1
exon_skip_453092674176215:74176329:74181182:74181280:74183087:7418313474181182:74181280ENSG00000135297.11ENST00000521032.1
exon_skip_453093674176215:74176329:74183087:74183377:74189454:7418956774183087:74183377ENSG00000135297.11ENST00000415954.2,ENST00000498286.1,ENST00000370305.1,ENST00000370308.4,ENST00000370300.4
exon_skip_453095674189785:74189849:74190015:74190090:74190397:7419048574190015:74190090ENSG00000135297.11ENST00000370305.1,ENST00000370300.4
exon_skip_453096674189785:74189849:74190040:74190090:74190397:7419048574190040:74190090ENSG00000135297.11ENST00000520366.1
exon_skip_453097674190040:74190090:74190397:74190528:74192171:7419225774190397:74190528ENSG00000135297.11ENST00000524046.1
exon_skip_453099674190397:74190528:74190719:74190839:74191762:7419196774190719:74190839ENSG00000135297.11ENST00000415954.2
exon_skip_453102674190397:74190528:74190723:74190839:74191762:7419196774190723:74190839ENSG00000135297.11ENST00000445187.1
exon_skip_453104674190397:74190528:74191751:74191967:74192171:7419225774191751:74191967ENSG00000135297.11ENST00000462039.1
exon_skip_453106674190397:74190528:74191762:74191967:74192171:7419225774191762:74191967ENSG00000135297.11ENST00000498286.1,ENST00000370305.1,ENST00000370308.4,ENST00000415228.1,ENST00000370300.4
exon_skip_453108674190397:74190528:74192171:74192343:74201956:7420204874192171:74192343ENSG00000135297.11ENST00000524046.1
exon_skip_453110674190723:74190839:74191762:74191967:74192171:7419225774191762:74191967ENSG00000135297.11ENST00000415954.2,ENST00000445187.1
exon_skip_453111674191854:74191967:74192171:74192343:74196320:7419648474192171:74192343ENSG00000135297.11ENST00000523763.1
exon_skip_453112674191854:74191967:74192171:74192343:74201956:7420204874192171:74192343ENSG00000135297.11ENST00000415954.2,ENST00000498286.1,ENST00000370305.1,ENST00000370308.4,ENST00000415228.1,ENST00000370300.4,ENST00000462039.1,ENST00000521156.1
exon_skip_453114674192171:74192343:74196320:74196484:74201956:7420204874196320:74196484ENSG00000135297.11ENST00000523763.1
exon_skip_453115674192171:74192343:74201956:74202075:74207458:7420761974201956:74202075ENSG00000135297.11ENST00000415954.2,ENST00000498286.1,ENST00000370305.1,ENST00000370308.4,ENST00000415228.1,ENST00000370300.4,ENST00000462039.1
exon_skip_453116674192171:74192343:74201956:74202075:74210296:7421042474201956:74202075ENSG00000135297.11ENST00000521156.1
exon_skip_453118674201956:74202075:74207458:74207619:74210296:7421042474207458:74207619ENSG00000135297.11ENST00000415954.2,ENST00000498286.1,ENST00000370305.1,ENST00000370308.4,ENST00000415228.1,ENST00000370300.4,ENST00000462039.1

check button PSI values of skipped exons in GTEx.
psi gtex

* Skipped exon sequences.

Top

Open reading frame (ORF) annotation in the exon skipping event for MTO1

check button Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000003703007417593174176131Frame-shift
ENST000003703007418308774183377Frame-shift
ENST000003703007419176274191967Frame-shift
ENST000003703007419217174192343Frame-shift
ENST000003703007420195674202075Frame-shift
ENST000003703007420745874207619Frame-shift
ENST000003703007419001574190090In-frame

check button Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000003703007417593174176131Frame-shift
ENST000003703007418308774183377Frame-shift
ENST000003703007419176274191967Frame-shift
ENST000003703007419217174192343Frame-shift
ENST000003703007420195674202075Frame-shift
ENST000003703007420745874207619Frame-shift
ENST000003703007419001574190090In-frame

Top

Infer the effects of exon skipping event on protein functional features for MTO1

check button Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.
prot feature distribution

check button Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000003703002978717741900157419009012201294376401

check button Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000003703002978717741900157419009012201294376401

check button Lost protein functional features of individual exon skipping events in TCGA.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature


check button Lost protein functional features of individual exon skipping events in GTEx.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature


Top

SNVs in the skipped exons for MTO1

check button - Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.
lollipop

check button - Differential PSIs between mutated versus non-mutated samples.

check button - Non-synonymous mutations located in the skipped exons in TCGA.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
LIHCTCGA-G3-A3CJ-01exon_skip_453093
74183088741833777418324074183240Frame_Shift_DelT-p.F230fs
HNSCTCGA-CR-7372-01exon_skip_453090
74175932741761317417603674176037Frame_Shift_Ins-GTp.C108fs
HNSCTCGA-CR-7372-01exon_skip_453090
74175932741761317417603674176037Frame_Shift_Ins-GTp.G108fs
LUADTCGA-75-6211-01exon_skip_453093
74183088741833777418311174183111Nonsense_MutationGTp.E187*
ESCATCGA-Q9-A6FW-01exon_skip_453097
74190398741905287419046974190469Nonsense_MutationCTp.R401*
ESCATCGA-Q9-A6FW-01exon_skip_453097
74190398741905287419046974190469Nonsense_MutationCTp.R426X

check button - Depth of coverage in the three exons composing exon skipping event
Depth of coverage in three exonsMutation description

check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
AN3CA_ENDOMETRIUM74191763741919677419192074191921Frame_Shift_Ins-Tp.L499fs
AN3CA_ENDOMETRIUM74191752741919677419192074191921Frame_Shift_Ins-Tp.L499fs
HS840T_FIBROBLAST74175932741761317417601874176018Missense_MutationCTp.R102C
UMUC16_URINARY_TRACT74175932741761317417606074176060Missense_MutationCTp.R116W
HCT116_LARGE_INTESTINE74175932741761317417606074176060Missense_MutationCTp.R116W
HCC2998_LARGE_INTESTINE74175932741761317417607574176075Missense_MutationGAp.A121T
HEC108_ENDOMETRIUM74183088741833777418310374183103Missense_MutationTCp.V184A
SKNDZ_AUTONOMIC_GANGLIA74183088741833777418319274183192Missense_MutationGAp.G214R
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE74183088741833777418319374183193Missense_MutationGTp.G214V
NCIH211_LUNG74183088741833777418325074183250Missense_MutationGCp.G233A
JHUEM7_ENDOMETRIUM74183088741833777418327774183277Missense_MutationGAp.R242Q
TE5_OESOPHAGUS74183088741833777418336474183364Missense_MutationCTp.T271I
MDAMB175VII_BREAST74190398741905287419050574190505Missense_MutationGAp.G438S
NCIH196_LUNG74191763741919677419180374191803Missense_MutationGAp.R459H
NCIH196_LUNG74191752741919677419180374191803Missense_MutationGAp.R459H
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE74191763741919677419180874191808Missense_MutationCAp.P461T
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE74191752741919677419180874191808Missense_MutationCAp.P461T
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE74191763741919677419180874191808Missense_MutationCAp.P461T
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE74191752741919677419180874191808Missense_MutationCAp.P461T
TT_THYROID74191763741919677419184274191842Missense_MutationTCp.I472T
TT_THYROID74191752741919677419184274191842Missense_MutationTCp.I472T
TOV21G_OVARY74191763741919677419185474191854Missense_MutationTAp.I476N
TOV21G_OVARY74191752741919677419185474191854Missense_MutationTAp.I476N
SNGM_ENDOMETRIUM74191763741919677419194474191944Missense_MutationCGp.A506G
SNGM_ENDOMETRIUM74191752741919677419194474191944Missense_MutationCGp.A506G
SW1783_CENTRAL_NERVOUS_SYSTEM74192172741923437419220574192205Missense_MutationGAp.R525Q
TE14_OESOPHAGUS74192172741923437419221474192214Missense_MutationGAp.R528K
UMUC14_URINARY_TRACT74192172741923437419221674192216Missense_MutationGAp.A529T
CHLA06ATRT_SOFT_TISSUE74192172741923437419232274192322Missense_MutationCTp.T564I
HEC251_ENDOMETRIUM74201957742020757420196474201964Missense_MutationGAp.D574N
CAL33_UPPER_AERODIGESTIVE_TRACT74201957742020757420197974201979Missense_MutationGAp.E579K
LC2AD_LUNG74201957742020757420205774202057Missense_MutationGAp.E605K
SKN_ENDOMETRIUM74201957742020757420207174202071Missense_MutationAGp.I609M
NCIH292_LUNG74207459742076197420751174207511Missense_MutationGTp.Q628H
SNU387_LIVER74207459742076197420761674207616Missense_MutationGCp.Q663H
HCT15_LARGE_INTESTINE74207459742076197420749474207494Nonsense_MutationGTp.E623*
HKA1_SKIN74207459742076197420758774207587Nonsense_MutationCTp.R654*
KYSE140_OESOPHAGUS74192172741923437419234374192343Splice_SiteGCp.R571T
RCM1_LARGE_INTESTINE74192172741923437419234374192343Splice_SiteGCp.R571T
RERFLCKJ_LUNG74192172741923437419234374192343Splice_SiteGCp.R571T

Top

Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for MTO1

check button sQTL information located at the skipped exons.
Exon skip IDChromosomeThree exonsSkippped exonENSTCancer typeSNP idLocationDNA change (ref/var)P-value
exon_skip_453097674190040:74190090:74190397:74190528:74192171:7419225774190397:74190528ENST00000524046.1COADrs2036039chr6:74190448A/G4.31e-04
exon_skip_453097674190040:74190090:74190397:74190528:74192171:7419225774190397:74190528ENST00000524046.1BLCArs2036039chr6:74190448A/G2.40e-06
exon_skip_453097674190040:74190090:74190397:74190528:74192171:7419225774190397:74190528ENST00000524046.1ESCArs2036039chr6:74190448A/G7.73e-04
exon_skip_453097674190040:74190090:74190397:74190528:74192171:7419225774190397:74190528ENST00000524046.1HNSCrs2036039chr6:74190448A/G1.49e-11
exon_skip_453097674190040:74190090:74190397:74190528:74192171:7419225774190397:74190528ENST00000524046.1BRCArs2036039chr6:74190448A/G7.11e-11
exon_skip_453097674190040:74190090:74190397:74190528:74192171:7419225774190397:74190528ENST00000524046.1BRCArs2036039chr6:74190448A/G4.81e-04
exon_skip_453097674190040:74190090:74190397:74190528:74192171:7419225774190397:74190528ENST00000524046.1KIRPrs2036039chr6:74190448A/G4.08e-05
exon_skip_453097674190040:74190090:74190397:74190528:74192171:7419225774190397:74190528ENST00000524046.1LGGrs2036039chr6:74190448A/G3.59e-06
exon_skip_453097674190040:74190090:74190397:74190528:74192171:7419225774190397:74190528ENST00000524046.1KIRCrs2036039chr6:74190448A/G1.23e-05
exon_skip_453097674190040:74190090:74190397:74190528:74192171:7419225774190397:74190528ENST00000524046.1KIRCrs2036039chr6:74190448A/G2.71e-04
exon_skip_453097674190040:74190090:74190397:74190528:74192171:7419225774190397:74190528ENST00000524046.1LUADrs2036039chr6:74190448A/G1.40e-05
exon_skip_453097674190040:74190090:74190397:74190528:74192171:7419225774190397:74190528ENST00000524046.1LUADrs2036039chr6:74190448A/G6.19e-04
exon_skip_453097674190040:74190090:74190397:74190528:74192171:7419225774190397:74190528ENST00000524046.1LIHCrs2036039chr6:74190448A/G2.32e-07
exon_skip_453097674190040:74190090:74190397:74190528:74192171:7419225774190397:74190528ENST00000524046.1LUSCrs2036039chr6:74190448A/G5.93e-14
exon_skip_453097674190040:74190090:74190397:74190528:74192171:7419225774190397:74190528ENST00000524046.1PRADrs2036039chr6:74190448A/G5.11e-10
exon_skip_453097674190040:74190090:74190397:74190528:74192171:7419225774190397:74190528ENST00000524046.1TGCTrs2036039chr6:74190448A/G9.49e-04
exon_skip_453097674190040:74190090:74190397:74190528:74192171:7419225774190397:74190528ENST00000524046.1THCArs2036039chr6:74190448A/G2.58e-14
exon_skip_453092674176215:74176329:74181182:74181280:74183087:7418313474181182:74181280ENST00000521032.1CESCrs6453676chr6:74181194G/A1.22e-03
exon_skip_453092674176215:74176329:74181182:74181280:74183087:7418313474181182:74181280ENST00000521032.1COADrs6453676chr6:74181194G/A1.51e-03
exon_skip_453092674176215:74176329:74181182:74181280:74183087:7418313474181182:74181280ENST00000521032.1BLCArs6453676chr6:74181194G/A3.41e-05
exon_skip_453092674176215:74176329:74181182:74181280:74183087:7418313474181182:74181280ENST00000521032.1HNSCrs6453676chr6:74181194G/A9.37e-12
exon_skip_453092674176215:74176329:74181182:74181280:74183087:7418313474181182:74181280ENST00000521032.1HNSCrs6453676chr6:74181194G/A1.45e-03
exon_skip_453092674176215:74176329:74181182:74181280:74183087:7418313474181182:74181280ENST00000521032.1BRCArs6453676chr6:74181194G/A2.17e-12
exon_skip_453092674176215:74176329:74181182:74181280:74183087:7418313474181182:74181280ENST00000521032.1BRCArs6453676chr6:74181194G/A2.74e-04
exon_skip_453092674176215:74176329:74181182:74181280:74183087:7418313474181182:74181280ENST00000521032.1KIRPrs6453676chr6:74181194G/A6.77e-04
exon_skip_453092674176215:74176329:74181182:74181280:74183087:7418313474181182:74181280ENST00000521032.1LGGrs6453676chr6:74181194G/A5.74e-06
exon_skip_453092674176215:74176329:74181182:74181280:74183087:7418313474181182:74181280ENST00000521032.1KIRCrs6453676chr6:74181194G/A2.05e-07
exon_skip_453092674176215:74176329:74181182:74181280:74183087:7418313474181182:74181280ENST00000521032.1KIRCrs6453676chr6:74181194G/A2.85e-03
exon_skip_453092674176215:74176329:74181182:74181280:74183087:7418313474181182:74181280ENST00000521032.1LUADrs6453676chr6:74181194G/A2.72e-06
exon_skip_453092674176215:74176329:74181182:74181280:74183087:7418313474181182:74181280ENST00000521032.1LIHCrs6453676chr6:74181194G/A9.07e-08
exon_skip_453092674176215:74176329:74181182:74181280:74183087:7418313474181182:74181280ENST00000521032.1LUSCrs6453676chr6:74181194G/A5.05e-16
exon_skip_453092674176215:74176329:74181182:74181280:74183087:7418313474181182:74181280ENST00000521032.1PRADrs6453676chr6:74181194G/A3.74e-12
exon_skip_453092674176215:74176329:74181182:74181280:74183087:7418313474181182:74181280ENST00000521032.1THCArs6453676chr6:74181194G/A1.48e-13

Top

Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for MTO1


Top

Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for MTO1


Top

RelatedDrugs for MTO1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for MTO1

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource
MTO1C3553529COMBINED OXIDATIVE PHOSPHORYLATION DEFICIENCY 101ORPHANET;UNIPROT