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Center for Computational Systems Medicine
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Gene summary

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Gene structures and expression levels

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Exon skipping events with PSIs in TCGA

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Exon skipping events with PSIs in GTEx

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Open reading frame (ORF) annotation in the exon skipping event

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Exon skipping events in the canonical protein sequence

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SNVs in the skipped exons with depth of coverage

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Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon

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Related drugs with this gene

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Related diseases with this gene

Gene summary for EHBP1L1

check button Gene summary
Gene informationGene symbol

EHBP1L1

Gene ID

254102

Gene nameEH domain binding protein 1 like 1
Synonyms-
Cytomap

11q13.1

Type of geneprotein-coding
DescriptionEH domain-binding protein 1-like protein 1tangerin
Modification date20180519
UniProtAcc

Q8N3D4

ContextPubMed: EHBP1L1 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract]
- Title (PMID)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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Exon skipping events across known transcript of Ensembl for EHBP1L1 from UCSC genome browser

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

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Gene isoform structures and expression levels for EHBP1L1

check button Expression levels of gene isoforms across TCGA.
gencode gene structure

check button Expression levels of gene isoforms across GTEx.
gencode gene structure


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Exon skipping events with PSIs in TCGA for EHBP1L1

check button Information of exkip skipping event in TCGA.
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_611031165343516:65343877:65346548:65346606:65346811:6534685165346548:65346606ENSG00000173442.7ENST00000533237.1
exon_skip_611081165346811:65346907:65347406:65347460:65347551:6534773065347406:65347460ENSG00000173442.7ENST00000309295.4,ENST00000533237.1
exon_skip_611431165348688:65348844:65349009:65349487:65351711:6535186965349009:65349487ENSG00000173442.7ENST00000533237.1
exon_skip_611471165348688:65348844:65349009:65351236:65351711:6535186965349009:65351236ENSG00000173442.7ENST00000309295.4
exon_skip_611531165349369:65349436:65351062:65351236:65351711:6535186965351062:65351236ENSG00000173442.7ENST00000533465.1
exon_skip_611641165357221:65357291:65357406:65357462:65357557:6535767665357406:65357462ENSG00000173442.7ENST00000309295.4

check button PSI values of skipped exons in TCGA.
psi tcga

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Exon skipping events with PSIs in GTEx for EHBP1L1

check button Information of exkip skipping event in GTEx
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_611031165343516:65343877:65346548:65346606:65346811:6534685165346548:65346606ENSG00000173442.7ENST00000533237.1
exon_skip_611081165346811:65346907:65347406:65347460:65347551:6534773065347406:65347460ENSG00000173442.7ENST00000309295.4,ENST00000533237.1
exon_skip_611091165347551:65347730:65347807:65347950:65348528:6534859765347807:65347950ENSG00000173442.7ENST00000309295.4,ENST00000533237.1
exon_skip_611431165348688:65348844:65349009:65349487:65351711:6535186965349009:65349487ENSG00000173442.7ENST00000533237.1
exon_skip_611471165348688:65348844:65349009:65351236:65351711:6535186965349009:65351236ENSG00000173442.7ENST00000309295.4
exon_skip_611531165349369:65349436:65351062:65351236:65351711:6535186965351062:65351236ENSG00000173442.7ENST00000533465.1
exon_skip_611641165357221:65357291:65357406:65357462:65357557:6535767665357406:65357462ENSG00000173442.7ENST00000309295.4

check button PSI values of skipped exons in GTEx.
psi gtex

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for EHBP1L1

check button Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000003092956534900965351236Frame-shift
ENST000003092956535740665357462Frame-shift
ENST000003092956534740665347460In-frame

check button Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST000003092956534780765347950Frame-shift
ENST000003092956534900965351236Frame-shift
ENST000003092956535740665357462Frame-shift
ENST000003092956534740665347460In-frame

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Infer the effects of exon skipping event on protein functional features for EHBP1L1

check button Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.
prot feature distribution

check button Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST0000030929552021523653474066534746052457786104

check button Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST0000030929552021523653474066534746052457786104

check button Lost protein functional features of individual exon skipping events in TCGA.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q8N3D48610411523ChainID=PRO_0000285204;Note=EH domain-binding protein 1-like protein 1
Q8N3D4861048157DomainNote=C2 NT-type;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01186


check button Lost protein functional features of individual exon skipping events in GTEx.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q8N3D48610411523ChainID=PRO_0000285204;Note=EH domain-binding protein 1-like protein 1
Q8N3D4861048157DomainNote=C2 NT-type;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01186


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SNVs in the skipped exons for EHBP1L1

check button - Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.
lollipop

check button - Differential PSIs between mutated versus non-mutated samples.
EHBP1L1_COAD_exon_skip_61147_psi_boxplot.png
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EHBP1L1_GBM_exon_skip_61147_psi_boxplot.png
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EHBP1L1_LIHC_exon_skip_61147_psi_boxplot.png
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EHBP1L1_SKCM_exon_skip_61147_psi_boxplot.png
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check button - Non-synonymous mutations located in the skipped exons in TCGA.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
THCATCGA-IM-A420-01exon_skip_61143
65349010653494876534913965349140Frame_Shift_DelAG-p.PA332fs
THCATCGA-IM-A420-01exon_skip_61147
65349010653512366534913965349140Frame_Shift_DelAG-p.PA332fs
GBMTCGA-12-5295-01exon_skip_61143
65349010653494876534946065349460Frame_Shift_DelA-p.G439fs
GBMTCGA-12-5295-01exon_skip_61147
65349010653512366534946065349460Frame_Shift_DelA-p.G439fs
COADTCGA-A6-6781-01exon_skip_61147
65349010653512366534965665349657Frame_Shift_DelGA-p.504_505del
LIHCTCGA-2Y-A9GW-01exon_skip_61147
65349010653512366535007665350076Frame_Shift_DelG-p.P644fs
LIHCTCGA-G3-A3CJ-01exon_skip_61147
65349010653512366535019965350199Frame_Shift_DelG-p.G686fs
LIHCTCGA-CC-A123-01exon_skip_61147
65349010653512366535020465350219Frame_Shift_DelACTGAAGATAGAAGAT-p.PLKIED687fs
SKCMTCGA-EE-A3J5-06exon_skip_61147
65349010653512366535032465350324Frame_Shift_DelG-p.Q727fs
LIHCTCGA-G3-A3CJ-01exon_skip_61147
65349010653512366535049665350496Frame_Shift_DelG-p.G785fs
LIHCTCGA-DD-A39Y-01exon_skip_61147
65349010653512366535060565350605Frame_Shift_DelC-p.T821fs
LIHCTCGA-DD-A3A0-01exon_skip_61147
65349010653512366535102565351025Frame_Shift_DelT-p.V961fs
LIHCTCGA-DD-A39Y-01exon_skip_61164
65357407653574626535744165357441Frame_Shift_DelC-p.S1346fs
BLCATCGA-XF-A9SX-01exon_skip_61147
65349010653512366534982265349822Nonsense_MutationGAp.W560*
BLCATCGA-FD-A3SP-01exon_skip_61147
65349010653512366534983065349830Nonsense_MutationGTp.E563*
HNSCTCGA-IQ-A61H-01exon_skip_61147
65349010653512366534986065349860Nonsense_MutationGTp.E573*
UCECTCGA-BS-A0UV-01exon_skip_61147
65349010653512366534994465349944Nonsense_MutationGTp.E601*
HNSCTCGA-IQ-A61H-01exon_skip_61147
65349010653512366535080565350805Nonsense_MutationGTp.E888*

check button - Depth of coverage in the three exons composing exon skipping event
Depth of coverage in three exonsMutation description
EHBP1L1_65348688_65348844_65349009_65351236_65351711_65351869_TCGA-12-5295-01Sample: TCGA-12-5295-01
Cancer type: GBM
ESID: exon_skip_61147
Skipped exon start: 65349010
Skipped exon end: 65351236
Mutation start: 65349460
Mutation end: 65349460
Mutation type: Frame_Shift_Del
Reference seq: A
Mutation seq: -
AAchange: p.G439fs
EHBP1L1_65348688_65348844_65349009_65351236_65351711_65351869_TCGA-12-5295-01Sample: TCGA-12-5295-01
Cancer type: GBM
ESID: exon_skip_61143
Skipped exon start: 65349010
Skipped exon end: 65349487
Mutation start: 65349460
Mutation end: 65349460
Mutation type: Frame_Shift_Del
Reference seq: A
Mutation seq: -
AAchange: p.G439fs
exon_skip_61143_GBM_TCGA-12-5295-01.png
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exon_skip_61147_GBM_TCGA-12-5295-01.png
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EHBP1L1_65348688_65348844_65349009_65351236_65351711_65351869_TCGA-DD-A39Y-01Sample: TCGA-DD-A39Y-01
Cancer type: LIHC
ESID: exon_skip_61147
Skipped exon start: 65349010
Skipped exon end: 65351236
Mutation start: 65350605
Mutation end: 65350605
Mutation type: Frame_Shift_Del
Reference seq: C
Mutation seq: -
AAchange: p.T821fs
EHBP1L1_65348688_65348844_65349009_65351236_65351711_65351869_TCGA-DD-A39Y-01Sample: TCGA-DD-A39Y-01
Cancer type: LIHC
ESID: exon_skip_61164
Skipped exon start: 65357407
Skipped exon end: 65357462
Mutation start: 65357441
Mutation end: 65357441
Mutation type: Frame_Shift_Del
Reference seq: C
Mutation seq: -
AAchange: p.S1346fs
exon_skip_105023_LIHC_TCGA-DD-A39Y-01.png
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EHBP1L1_65348688_65348844_65349009_65351236_65351711_65351869_TCGA-EE-A3J5-06Sample: TCGA-EE-A3J5-06
Cancer type: SKCM
ESID: exon_skip_61147
Skipped exon start: 65349010
Skipped exon end: 65351236
Mutation start: 65350324
Mutation end: 65350324
Mutation type: Frame_Shift_Del
Reference seq: G
Mutation seq: -
AAchange: p.Q727fs
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EHBP1L1_65348688_65348844_65349009_65349487_65351711_65351869_TCGA-12-5295-01Sample: TCGA-12-5295-01
Cancer type: GBM
ESID: exon_skip_61147
Skipped exon start: 65349010
Skipped exon end: 65351236
Mutation start: 65349460
Mutation end: 65349460
Mutation type: Frame_Shift_Del
Reference seq: A
Mutation seq: -
AAchange: p.G439fs
EHBP1L1_65348688_65348844_65349009_65349487_65351711_65351869_TCGA-12-5295-01Sample: TCGA-12-5295-01
Cancer type: GBM
ESID: exon_skip_61143
Skipped exon start: 65349010
Skipped exon end: 65349487
Mutation start: 65349460
Mutation end: 65349460
Mutation type: Frame_Shift_Del
Reference seq: A
Mutation seq: -
AAchange: p.G439fs
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check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
LS411N_LARGE_INTESTINE65349010653512366534903965349039Frame_Shift_DelC-p.A299fs
LS411N_LARGE_INTESTINE65349010653494876534903965349039Frame_Shift_DelC-p.A299fs
NUGC3_STOMACH65349010653512366534908665349086Frame_Shift_DelC-p.P316fs
NUGC3_STOMACH65349010653494876534908665349086Frame_Shift_DelC-p.P316fs
CAL54_KIDNEY65349010653512366535054365350543Frame_Shift_DelG-p.E800fs
2313287_STOMACH65349010653512366535099865350998Frame_Shift_DelG-p.W952fs
SNU324_PANCREAS65346549653466066534655665346556Missense_MutationGAp.D38N
JHUEM2_ENDOMETRIUM65346549653466066534659365346593Missense_MutationGAp.R50H
HCT15_LARGE_INTESTINE65346549653466066534659365346593Missense_MutationGAp.R50H
KARPAS45_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE65346549653466066534659365346593Missense_MutationGAp.R50H
HUCCT1_BILIARY_TRACT65347407653474606534741665347416Missense_MutationGTp.V90L
KARPAS45_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE65349010653512366534907765349077Missense_MutationGAp.A312T
KARPAS45_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE65349010653494876534907765349077Missense_MutationGAp.A312T
MOLT4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE65349010653512366534908965349089Missense_MutationCAp.P316T
MOLT4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE65349010653494876534908965349089Missense_MutationCAp.P316T
TTC466_BONE65349010653512366534921365349213Missense_MutationGAp.R357K
TTC466_BONE65349010653494876534921365349213Missense_MutationGAp.R357K
NCIH226_LUNG65349010653512366534927965349279Missense_MutationATp.E379V
NCIH226_LUNG65349010653494876534927965349279Missense_MutationATp.E379V
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE65349010653512366534933865349338Missense_MutationGAp.G399R
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE65349010653494876534933865349338Missense_MutationGAp.G399R
SNGM_ENDOMETRIUM65349010653512366534934265349342Missense_MutationGAp.G400D
SNGM_ENDOMETRIUM65349010653494876534934265349342Missense_MutationGAp.G400D
EFO27_OVARY65349010653512366534934265349342Missense_MutationGAp.G400D
EFO27_OVARY65349010653494876534934265349342Missense_MutationGAp.G400D
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE65349010653512366534934965349349Missense_MutationGTp.E402D
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE65349010653494876534934965349349Missense_MutationGTp.E402D
HEC108_ENDOMETRIUM65349010653512366534946465349464Missense_MutationGAp.E441K
HEC108_ENDOMETRIUM65349010653494876534946465349464Missense_MutationGAp.E441K
KATOIII_STOMACH65349010653512366534959165349591Missense_MutationCTp.A483V
DANG_PANCREAS65349010653512366534960965349609Missense_MutationCGp.S489C
HEC251_ENDOMETRIUM65349010653512366534968665349686Missense_MutationGAp.A515T
HN_UPPER_AERODIGESTIVE_TRACT65349010653512366534968665349686Missense_MutationGAp.A515T
HEC108_ENDOMETRIUM65349010653512366534977665349776Missense_MutationCAp.L545M
MOLT4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE65349010653512366534979365349793Missense_MutationGTp.Q550H
NCIH2342_LUNG65349010653512366534980665349806Missense_MutationATp.R555W
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE65349010653512366534997865349978Missense_MutationCTp.A612V
SNU1040_LARGE_INTESTINE65349010653512366535011665350116Missense_MutationCTp.A658V
MRKNU1_BREAST65349010653512366535024465350244Missense_MutationAGp.T701A
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE65349010653512366535027765350277Missense_MutationCTp.P712S
HCC2998_LARGE_INTESTINE65349010653512366535034065350340Missense_MutationGAp.D733N
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE65349010653512366535037365350373Missense_MutationGAp.A744T
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE65349010653512366535045865350458Missense_MutationCTp.A772V
NCIH740_LUNG65349010653512366535056565350565Missense_MutationGCp.E808Q
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE65349010653512366535078765350787Missense_MutationCGp.Q882E
BE2M17_AUTONOMIC_GANGLIA65349010653512366535079465350794Missense_MutationCTp.S884L
SKNBE2_AUTONOMIC_GANGLIA65349010653512366535079465350794Missense_MutationCTp.S884L
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE65349010653512366535082065350820Missense_MutationGTp.V893F
451LU_SKIN65349010653512366535090165350901Missense_MutationGAp.E920K
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE65349010653512366535091065350910Missense_MutationGAp.G923R
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE65349010653512366535092765350927Missense_MutationGTp.E928D
KELLY_AUTONOMIC_GANGLIA65349010653512366535092865350928Missense_MutationAGp.T929A
DU145_PROSTATE65349010653512366535095965350959Missense_MutationCGp.A939G
D502MG_CENTRAL_NERVOUS_SYSTEM65349010653512366535095965350959Missense_MutationCGp.A939G
NCIH513_PLEURA65349010653512366535096265350962Missense_MutationGTp.G940V
KYSE450_OESOPHAGUS65349010653512366535102565351025Missense_MutationTGp.V961G
TGBC24TKB_BILIARY_TRACT65349010653512366535102565351025Missense_MutationTGp.V961G
NCIH1944_LUNG65349010653512366535104165351041Missense_MutationGTp.E966D
HCC1195_LUNG65349010653512366535114265351142Missense_MutationCGp.P1000R
HCC1195_LUNG65351063653512366535114265351142Missense_MutationCGp.P1000R
RERFLCFM_LUNG65357407653574626535741365357413Missense_MutationGAp.S1337N
NB13_AUTONOMIC_GANGLIA65349010653512366535095565350955Nonsense_MutationGTp.E938*
SNU1040_LARGE_INTESTINE65349010653512366535103965351039Nonsense_MutationGTp.E966*
SUPHD1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE65347407653474606534740765347407Splice_SiteGAp.D87N

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for EHBP1L1

check button sQTL information located at the skipped exons.
Exon skip IDChromosomeThree exonsSkippped exonENSTCancer typeSNP idLocationDNA change (ref/var)P-value

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for EHBP1L1


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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for EHBP1L1


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RelatedDrugs for EHBP1L1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for EHBP1L1

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource