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| Open reading frame (ORF) annotation in the exon skipping event |
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| Splicing Quantitative Trait Loci (sQTLs) in the skipped exons |
| Splicing Quantitative Trait Methylation (sQTM) in the skipped exon |
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Gene summary for LRFN5 |
 Gene summary |
| Gene information | Gene symbol | LRFN5 | Gene ID | 145581 |
| Gene name | leucine rich repeat and fibronectin type III domain containing 5 | |
| Synonyms | C14orf146|FIGLER8|SALM5 | |
| Cytomap | 14q21.1 | |
| Type of gene | protein-coding | |
| Description | leucine-rich repeat and fibronectin type-III domain-containing protein 5fibronectin type III, immunoglobulin and leucine rich repeat domains 8 | |
| Modification date | 20180522 | |
| UniProtAcc | Q96NI6 | |
| Context | PubMed: LRFN5 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract] - Title (PMID) |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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Exon skipping events across known transcript of Ensembl for LRFN5 from UCSC genome browser |
| Skipped exons in TCGA and GTEx based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Gene isoform structures and expression levels for LRFN5 |
| Expression levels of gene isoforms across TCGA. |
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| Expression levels of gene isoforms across GTEx. |
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Exon skipping events with PSIs in TCGA for LRFN5 |
| Information of exkip skipping event in TCGA. |
| Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
| exon_skip_106266 | 14 | 42077617:42077765:42200539:42200556:42202673:42202835 | 42200539:42200556 | ENSG00000165379.9 | ENST00000555279.1 |
| exon_skip_106269 | 14 | 42077617:42077765:42236056:42236232:42355808:42357213 | 42236056:42236232 | ENSG00000165379.9 | ENST00000554120.1 |
| exon_skip_106272 | 14 | 42236056:42236232:42355808:42357213:42368119:42368163 | 42355808:42357213 | ENSG00000165379.9 | ENST00000554171.1 |
| exon_skip_106275 | 14 | 42355808:42357213:42360452:42361165:42368119:42368163 | 42360452:42361165 | ENSG00000165379.9 | ENST00000298119.4 |
| exon_skip_106276 | 14 | 42355808:42357213:42368119:42368163:42373360:42373752 | 42368119:42368163 | ENSG00000165379.9 | ENST00000554171.1 |
| PSI values of skipped exons in TCGA. |
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Exon skipping events with PSIs in GTEx for LRFN5 |
| Information of exkip skipping event in GTEx |
| Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
| exon_skip_106266 | 14 | 42077617:42077765:42200539:42200556:42202673:42202835 | 42200539:42200556 | ENSG00000165379.9 | ENST00000555279.1 |
| exon_skip_106269 | 14 | 42077617:42077765:42236056:42236232:42355808:42357213 | 42236056:42236232 | ENSG00000165379.9 | ENST00000554120.1 |
| exon_skip_106272 | 14 | 42236056:42236232:42355808:42357213:42368119:42368163 | 42355808:42357213 | ENSG00000165379.9 | ENST00000554171.1 |
| exon_skip_106275 | 14 | 42355808:42357213:42360452:42361165:42368119:42368163 | 42360452:42361165 | ENSG00000165379.9 | ENST00000298119.4 |
| exon_skip_106276 | 14 | 42355808:42357213:42368119:42368163:42373360:42373752 | 42368119:42368163 | ENSG00000165379.9 | ENST00000554171.1 |
| PSI values of skipped exons in GTEx. |
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| * Skipped exon sequences. |
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Open reading frame (ORF) annotation in the exon skipping event for LRFN5 |
| Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms. |
| ENST | Start of skipped exon | End of skipped exon | ORF |
| ENST00000298119 | 42360452 | 42361165 | Frame-shift |
| Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms. |
| ENST | Start of skipped exon | End of skipped exon | ORF |
| ENST00000298119 | 42360452 | 42361165 | Frame-shift |
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Infer the effects of exon skipping event on protein functional features for LRFN5 |
| Exon skipping at the protein sequence level and followed lost functional features. * Click on the image to enlarge it in a new window. |
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| Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases. |
| ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
| Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases. |
| ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
| Lost protein functional features of individual exon skipping events in TCGA. |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
| Lost protein functional features of individual exon skipping events in GTEx. |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
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SNVs in the skipped exons for LRFN5 |
| - Lollipop plot for presenting exon skipping associated SNVs. * Click on the image to enlarge it in a new window. |
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| - Differential PSIs between mutated versus non-mutated samples. |
| - Non-synonymous mutations located in the skipped exons in TCGA. |
| Cancer type | Sample | ESID | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
| LIHC | TCGA-DD-A3A0-01 | exon_skip_106272 | 42355809 | 42357213 | 42355842 | 42355842 | Frame_Shift_Del | T | - | p.L5fs |
| LIHC | TCGA-DD-A39Y-01 | exon_skip_106272 | 42355809 | 42357213 | 42355949 | 42355949 | Frame_Shift_Del | G | - | p.G41fs |
| UCEC | TCGA-AP-A05N-01 | exon_skip_106272 | 42355809 | 42357213 | 42356521 | 42356521 | Frame_Shift_Del | T | - | p.S231fs |
| LUAD | TCGA-44-5644-01 | exon_skip_106272 | 42355809 | 42357213 | 42356666 | 42356678 | Frame_Shift_Del | GAAGAGTTTTTGT | - | p.EEFLC280fs |
| LIHC | TCGA-DD-A39Y-01 | exon_skip_106272 | 42355809 | 42357213 | 42356672 | 42356672 | Frame_Shift_Del | T | - | p.F282fs |
| LIHC | TCGA-DD-A3A0-01 | exon_skip_106272 | 42355809 | 42357213 | 42357136 | 42357136 | Frame_Shift_Del | T | - | p.N436fs |
| LIHC | TCGA-DD-A3A0-01 | exon_skip_106275 | 42360453 | 42361165 | 42360650 | 42360650 | Frame_Shift_Del | C | - | p.T528fs |
| LIHC | TCGA-DD-A1EG-01 | exon_skip_106275 | 42360453 | 42361165 | 42360958 | 42360958 | Frame_Shift_Del | C | - | p.P631fs |
| READ | TCGA-DT-5265-01 | exon_skip_106275 | 42360453 | 42361165 | 42361064 | 42361064 | Frame_Shift_Del | A | - | p.Q666fs |
| COAD | TCGA-A6-6653-01 | exon_skip_106272 | 42355809 | 42357213 | 42357189 | 42357190 | Frame_Shift_Ins | - | T | p.T454fs |
| LUAD | TCGA-67-3771-01 | exon_skip_106272 | 42355809 | 42357213 | 42355849 | 42355849 | Nonsense_Mutation | T | A | p.Y7* |
| SKCM | TCGA-YD-A9TA-06 | exon_skip_106272 | 42355809 | 42357213 | 42355906 | 42355906 | Nonsense_Mutation | T | A | p.C26* |
| LUAD | TCGA-93-8067-01 | exon_skip_106272 | 42355809 | 42357213 | 42356450 | 42356450 | Nonsense_Mutation | C | T | p.Q208* |
| UCEC | TCGA-D1-A16X-01 | exon_skip_106272 | 42355809 | 42357213 | 42356666 | 42356666 | Nonsense_Mutation | G | T | p.E280* |
| HNSC | TCGA-CV-5432-01 | exon_skip_106272 | 42355809 | 42357213 | 42356804 | 42356804 | Nonsense_Mutation | A | T | p.K326* |
| LUAD | TCGA-44-2657-01 | exon_skip_106272 | 42355809 | 42357213 | 42356876 | 42356876 | Nonsense_Mutation | A | T | p.K350* |
| ESCA | TCGA-Z6-A8JE-01 | exon_skip_106272 | 42355809 | 42357213 | 42357021 | 42357021 | Nonsense_Mutation | C | G | p.S398* |
| ESCA | TCGA-Z6-A8JE-01 | exon_skip_106272 | 42355809 | 42357213 | 42357021 | 42357021 | Nonsense_Mutation | C | G | p.S398X |
| LUAD | TCGA-86-8358-01 | exon_skip_106272 | 42355809 | 42357213 | 42357021 | 42357021 | Nonsense_Mutation | C | A | p.S398* |
| LUAD | TCGA-62-A470-01 | exon_skip_106272 | 42355809 | 42357213 | 42357036 | 42357036 | Nonsense_Mutation | C | A | p.S403* |
| LUAD | TCGA-55-8302-01 | exon_skip_106275 | 42360453 | 42361165 | 42360586 | 42360586 | Nonsense_Mutation | C | T | p.Q507* |
| LUSC | TCGA-60-2723-01 | exon_skip_106275 | 42360453 | 42361165 | 42360618 | 42360618 | Nonsense_Mutation | C | A | p.C517* |
| LUSC | TCGA-22-4599-01 | exon_skip_106275 | 42360453 | 42361165 | 42360908 | 42360908 | Nonsense_Mutation | C | A | p.S614* |
| UCS | TCGA-NF-A4X2-01 | exon_skip_106275 | 42360453 | 42361165 | 42360910 | 42360910 | Nonsense_Mutation | G | T | p.E615* |
| UCS | TCGA-NF-A4X2-01 | exon_skip_106275 | 42360453 | 42361165 | 42360910 | 42360910 | Nonsense_Mutation | G | T | p.E615X |
| HNSC | TCGA-CV-A45Z-01 | exon_skip_106275 | 42360453 | 42361165 | 42360920 | 42360920 | Nonsense_Mutation | C | A | p.S618* |
| CESC | TCGA-DR-A0ZM-01 | exon_skip_106275 | 42360453 | 42361165 | 42361085 | 42361085 | Nonsense_Mutation | C | G | p.S673* |
| KIRC | TCGA-B0-4698-01 | exon_skip_106276 | 42368120 | 42368163 | 42368164 | 42368164 | Splice_Site | G | T | . |
| - Depth of coverage in the three exons composing exon skipping event |
| Depth of coverage in three exons | Mutation description |
| - Non-synonymous mutations located in the skipped exons in CCLE. |
| Sample | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
| DU145_PROSTATE | 42355809 | 42357213 | 42356823 | 42356824 | Frame_Shift_Ins | - | A | p.R333fs |
| HARA_LUNG | 42355809 | 42357213 | 42355853 | 42355853 | Missense_Mutation | T | A | p.F9I |
| MB1_THYROID | 42355809 | 42357213 | 42355859 | 42355859 | Missense_Mutation | A | G | p.I11V |
| NCIH2110_LUNG | 42355809 | 42357213 | 42355896 | 42355896 | Missense_Mutation | G | T | p.R23L |
| RERFLCFM_LUNG | 42355809 | 42357213 | 42355899 | 42355899 | Missense_Mutation | G | T | p.C24F |
| CHLA57_BONE | 42355809 | 42357213 | 42355976 | 42355976 | Missense_Mutation | G | T | p.D50Y |
| HCT15_LARGE_INTESTINE | 42355809 | 42357213 | 42355983 | 42355983 | Missense_Mutation | G | T | p.R52I |
| NCIH187_LUNG | 42355809 | 42357213 | 42356061 | 42356061 | Missense_Mutation | T | A | p.V78E |
| SNU81_LARGE_INTESTINE | 42355809 | 42357213 | 42356090 | 42356090 | Missense_Mutation | A | C | p.S88R |
| PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 42355809 | 42357213 | 42356103 | 42356103 | Missense_Mutation | C | A | p.P92H |
| DERL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 42355809 | 42357213 | 42356114 | 42356114 | Missense_Mutation | G | A | p.A96T |
| GP2D_LARGE_INTESTINE | 42355809 | 42357213 | 42356150 | 42356150 | Missense_Mutation | A | G | p.S108G |
| GP5D_LARGE_INTESTINE | 42355809 | 42357213 | 42356150 | 42356150 | Missense_Mutation | A | G | p.S108G |
| NCIH2286_LUNG | 42355809 | 42357213 | 42356172 | 42356172 | Missense_Mutation | C | A | p.T115K |
| HS746T_STOMACH | 42355809 | 42357213 | 42356177 | 42356177 | Missense_Mutation | G | T | p.D117Y |
| DMS454_LUNG | 42355809 | 42357213 | 42356189 | 42356189 | Missense_Mutation | G | T | p.G121C |
| TGW_AUTONOMIC_GANGLIA | 42355809 | 42357213 | 42356201 | 42356201 | Missense_Mutation | C | A | p.L125I |
| U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 42355809 | 42357213 | 42356207 | 42356207 | Missense_Mutation | C | T | p.H127Y |
| TUR_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 42355809 | 42357213 | 42356207 | 42356207 | Missense_Mutation | C | T | p.H127Y |
| SCMCRM2_SOFT_TISSUE | 42355809 | 42357213 | 42356212 | 42356212 | Missense_Mutation | G | T | p.L128F |
| HPAFII_PANCREAS | 42355809 | 42357213 | 42356270 | 42356270 | Missense_Mutation | G | A | p.A148T |
| HS746T_STOMACH | 42355809 | 42357213 | 42356282 | 42356282 | Missense_Mutation | C | A | p.L152M |
| BFTC905_URINARY_TRACT | 42355809 | 42357213 | 42356297 | 42356298 | Missense_Mutation | AA | TT | p.N157F |
| EFO21_OVARY | 42355809 | 42357213 | 42356310 | 42356310 | Missense_Mutation | C | G | p.T161S |
| NCIH1793_LUNG | 42355809 | 42357213 | 42356319 | 42356319 | Missense_Mutation | G | C | p.W164S |
| CORL47_LUNG | 42355809 | 42357213 | 42356322 | 42356322 | Missense_Mutation | A | T | p.D165V |
| SNU175_LARGE_INTESTINE | 42355809 | 42357213 | 42356325 | 42356325 | Missense_Mutation | C | T | p.A166V |
| NCIH322_LUNG | 42355809 | 42357213 | 42356410 | 42356410 | Missense_Mutation | G | T | p.L194F |
| LU165_LUNG | 42355809 | 42357213 | 42356416 | 42356416 | Missense_Mutation | G | T | p.K196N |
| SW1271_LUNG | 42355809 | 42357213 | 42356455 | 42356455 | Missense_Mutation | G | C | p.K209N |
| DMS79_LUNG | 42355809 | 42357213 | 42356456 | 42356456 | Missense_Mutation | C | A | p.L210I |
| LC1F_LUNG | 42355809 | 42357213 | 42356478 | 42356478 | Missense_Mutation | A | G | p.Q217R |
| LC1SQSF_LUNG | 42355809 | 42357213 | 42356478 | 42356478 | Missense_Mutation | A | G | p.Q217R |
| LC1SQ_LUNG | 42355809 | 42357213 | 42356478 | 42356478 | Missense_Mutation | A | G | p.Q217R |
| SW403_LARGE_INTESTINE | 42355809 | 42357213 | 42356481 | 42356481 | Missense_Mutation | G | A | p.R218Q |
| HCC461_LUNG | 42355809 | 42357213 | 42356528 | 42356528 | Missense_Mutation | G | T | p.A234S |
| AGS_STOMACH | 42355809 | 42357213 | 42356534 | 42356534 | Missense_Mutation | A | G | p.S236G |
| MEWO_SKIN | 42355809 | 42357213 | 42356543 | 42356543 | Missense_Mutation | G | A | p.G239R |
| SNU1040_LARGE_INTESTINE | 42355809 | 42357213 | 42356576 | 42356576 | Missense_Mutation | T | G | p.W250G |
| SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 42355809 | 42357213 | 42356600 | 42356600 | Missense_Mutation | G | C | p.D258H |
| NCIH1568_LUNG | 42355809 | 42357213 | 42356643 | 42356643 | Missense_Mutation | G | A | p.R272H |
| MCC13_SKIN | 42355809 | 42357213 | 42356663 | 42356663 | Missense_Mutation | G | A | p.E279K |
| MERO84_LUNG | 42355809 | 42357213 | 42356693 | 42356693 | Missense_Mutation | A | G | p.I289V |
| SNU81_LARGE_INTESTINE | 42355809 | 42357213 | 42356699 | 42356699 | Missense_Mutation | C | T | p.R291C |
| GP2D_LARGE_INTESTINE | 42355809 | 42357213 | 42356702 | 42356702 | Missense_Mutation | C | T | p.H292Y |
| GP5D_LARGE_INTESTINE | 42355809 | 42357213 | 42356702 | 42356702 | Missense_Mutation | C | T | p.H292Y |
| WM115_SKIN | 42355809 | 42357213 | 42356705 | 42356705 | Missense_Mutation | A | C | p.T293P |
| SKMES1_LUNG | 42355809 | 42357213 | 42356732 | 42356732 | Missense_Mutation | C | A | p.Q302K |
| HCC1569_BREAST | 42355809 | 42357213 | 42356735 | 42356735 | Missense_Mutation | A | G | p.R303G |
| MM386_SKIN | 42355809 | 42357213 | 42356748 | 42356748 | Missense_Mutation | G | A | p.R307K |
| SNU1040_LARGE_INTESTINE | 42355809 | 42357213 | 42356752 | 42356752 | Missense_Mutation | C | G | p.C308W |
| NCIH2286_LUNG | 42355809 | 42357213 | 42356785 | 42356785 | Missense_Mutation | C | A | p.H319Q |
| SNU81_LARGE_INTESTINE | 42355809 | 42357213 | 42356810 | 42356810 | Missense_Mutation | A | T | p.I328F |
| LU165_LUNG | 42355809 | 42357213 | 42356852 | 42356852 | Missense_Mutation | C | G | p.L342V |
| TE4_OESOPHAGUS | 42355809 | 42357213 | 42356882 | 42356882 | Missense_Mutation | A | T | p.T352S |
| HSC2_UPPER_AERODIGESTIVE_TRACT | 42355809 | 42357213 | 42356919 | 42356919 | Missense_Mutation | G | T | p.G364V |
| HCC1833_LUNG | 42355809 | 42357213 | 42356927 | 42356927 | Missense_Mutation | A | G | p.T367A |
| EVSAT_BREAST | 42355809 | 42357213 | 42356966 | 42356966 | Missense_Mutation | T | A | p.L380I |
| BFTC905_URINARY_TRACT | 42355809 | 42357213 | 42356987 | 42356987 | Missense_Mutation | A | T | p.I387F |
| NCIH2110_LUNG | 42355809 | 42357213 | 42357003 | 42357003 | Missense_Mutation | C | A | p.P392H |
| NCIH1435_LUNG | 42355809 | 42357213 | 42357038 | 42357038 | Missense_Mutation | G | T | p.G404C |
| NCIH1703_LUNG | 42355809 | 42357213 | 42357056 | 42357056 | Missense_Mutation | A | T | p.S410C |
| HT115_LARGE_INTESTINE | 42355809 | 42357213 | 42357057 | 42357057 | Missense_Mutation | G | T | p.S410I |
| HEC251_ENDOMETRIUM | 42355809 | 42357213 | 42357140 | 42357140 | Missense_Mutation | C | A | p.Q438K |
| MM386_SKIN | 42355809 | 42357213 | 42357155 | 42357155 | Missense_Mutation | G | A | p.G443R |
| RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 42355809 | 42357213 | 42357156 | 42357156 | Missense_Mutation | G | T | p.G443V |
| SNU1040_LARGE_INTESTINE | 42355809 | 42357213 | 42357161 | 42357161 | Missense_Mutation | C | T | p.R445C |
| SNU398_LIVER | 42355809 | 42357213 | 42357170 | 42357170 | Missense_Mutation | C | G | p.Q448E |
| CTV1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 42355809 | 42357213 | 42357180 | 42357180 | Missense_Mutation | A | G | p.Y451C |
| NB17_AUTONOMIC_GANGLIA | 42355809 | 42357213 | 42357196 | 42357196 | Missense_Mutation | T | A | p.D456E |
| JHUEM7_ENDOMETRIUM | 42360453 | 42361165 | 42360481 | 42360481 | Missense_Mutation | C | A | p.L472M |
| JHUEM7_ENDOMETRIUM | 42360453 | 42361165 | 42360485 | 42360485 | Missense_Mutation | T | C | p.V473A |
| DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 42360453 | 42361165 | 42360498 | 42360499 | Missense_Mutation | TG | AT | p.A478S |
| MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 42360453 | 42361165 | 42360613 | 42360613 | Missense_Mutation | C | T | p.R516C |
| SBC5_LUNG | 42360453 | 42361165 | 42360623 | 42360623 | Missense_Mutation | T | A | p.F519Y |
| SBC5_LUNG | 42360453 | 42361165 | 42360624 | 42360624 | Missense_Mutation | C | A | p.F519L |
| SW684_SOFT_TISSUE | 42360453 | 42361165 | 42360632 | 42360632 | Missense_Mutation | C | T | p.S522F |
| HEC108_ENDOMETRIUM | 42360453 | 42361165 | 42360653 | 42360653 | Missense_Mutation | T | C | p.M529T |
| SAOS2_BONE | 42360453 | 42361165 | 42360692 | 42360692 | Missense_Mutation | T | C | p.L542P |
| RCCAB_KIDNEY | 42360453 | 42361165 | 42360697 | 42360697 | Missense_Mutation | T | C | p.F544L |
| CW2_LARGE_INTESTINE | 42360453 | 42361165 | 42360716 | 42360716 | Missense_Mutation | T | A | p.I550N |
| NCIH513_PLEURA | 42360453 | 42361165 | 42360789 | 42360789 | Missense_Mutation | C | A | p.N574K |
| EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 42360453 | 42361165 | 42360823 | 42360823 | Missense_Mutation | C | T | p.P586S |
| SW48_LARGE_INTESTINE | 42360453 | 42361165 | 42360866 | 42360866 | Missense_Mutation | C | T | p.A600V |
| L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 42360453 | 42361165 | 42360920 | 42360920 | Missense_Mutation | C | T | p.S618L |
| SNU81_LARGE_INTESTINE | 42360453 | 42361165 | 42360920 | 42360920 | Missense_Mutation | C | T | p.S618L |
| KYSE140_OESOPHAGUS | 42360453 | 42361165 | 42361001 | 42361001 | Missense_Mutation | G | C | p.R645T |
| VMCUB1_URINARY_TRACT | 42360453 | 42361165 | 42361031 | 42361031 | Missense_Mutation | C | T | p.P655L |
| NB17_AUTONOMIC_GANGLIA | 42360453 | 42361165 | 42361042 | 42361042 | Missense_Mutation | G | A | p.A659T |
| NCIH1793_LUNG | 42360453 | 42361165 | 42361084 | 42361084 | Missense_Mutation | T | A | p.S673T |
| NCIH1648_LUNG | 42360453 | 42361165 | 42361126 | 42361126 | Missense_Mutation | A | T | p.T687S |
| SNU1040_LARGE_INTESTINE | 42360453 | 42361165 | 42361126 | 42361126 | Missense_Mutation | A | G | p.T687A |
| SW962_VULVA | 42360453 | 42361165 | 42361132 | 42361132 | Missense_Mutation | G | A | p.G689R |
| NCIH510_LUNG | 42360453 | 42361165 | 42361135 | 42361135 | Missense_Mutation | C | A | p.P690T |
| NCIH2073_LUNG | 42368120 | 42368163 | 42368127 | 42368127 | Missense_Mutation | G | T | p.L702F |
| NCIH1993_LUNG | 42368120 | 42368163 | 42368127 | 42368127 | Missense_Mutation | G | T | p.L702F |
| NCIH2170_LUNG | 42355809 | 42357213 | 42356502 | 42356502 | Nonsense_Mutation | C | A | p.S225* |
| SNU81_LARGE_INTESTINE | 42355809 | 42357213 | 42356597 | 42356597 | Nonsense_Mutation | G | T | p.E257* |
| RL952_ENDOMETRIUM | 42355809 | 42357213 | 42356617 | 42356617 | Nonsense_Mutation | T | A | p.C263* |
| SNU81_LARGE_INTESTINE | 42355809 | 42357213 | 42356655 | 42356655 | Nonsense_Mutation | C | A | p.S276* |
| HCT15_LARGE_INTESTINE | 42355809 | 42357213 | 42356762 | 42356762 | Nonsense_Mutation | G | T | p.G312* |
| SBC5_LUNG | 42360453 | 42361165 | 42360623 | 42360624 | Nonsense_Mutation | TC | AA | p.F519* |
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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for LRFN5 |
| sQTL information located at the skipped exons. |
| Exon skip ID | Chromosome | Three exons | Skippped exon | ENST | Cancer type | SNP id | Location | DNA change (ref/var) | P-value |
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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for LRFN5 |
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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for LRFN5 |
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RelatedDrugs for LRFN5 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for LRFN5 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
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