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Center for Computational Systems Medicine
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Gene summary

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Gene structures and expression levels

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Exon skipping events with PSIs in TCGA

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Exon skipping events with PSIs in GTEx

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Open reading frame (ORF) annotation in the exon skipping event

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Exon skipping events in the canonical protein sequence

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SNVs in the skipped exons with depth of coverage

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Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon

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Related drugs with this gene

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Related diseases with this gene

Gene summary for MAP3K8

check button Gene summary
Gene informationGene symbol

MAP3K8

Gene ID

1326

Gene namemitogen-activated protein kinase kinase kinase 8
SynonymsAURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT
Cytomap

10p11.23

Type of geneprotein-coding
Descriptionmitogen-activated protein kinase kinase kinase 8Ewing sarcoma transformantaugmented in rheumatoid arthritis 2cot (cancer Osaka thyroid) oncogeneproto-oncogene c-Cotproto-oncogene serine/threoine protein kinasetumor progression locus 2
Modification date20180523
UniProtAcc

P41279

ContextPubMed: MAP3K8 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract]
- Title (PMID)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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Exon skipping events across known transcript of Ensembl for MAP3K8 from UCSC genome browser

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

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Gene isoform structures and expression levels for MAP3K8

check button Expression levels of gene isoforms across TCGA.
gencode gene structure

check button Expression levels of gene isoforms across GTEx.
gencode gene structure


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Exon skipping events with PSIs in TCGA for MAP3K8

check button Information of exkip skipping event in TCGA.
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_403161030723172:30723307:30726104:30726335:30727844:3072820330726104:30726335ENSG00000107968.5ENST00000375322.2
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENSG00000107968.5ENST00000415139.1,ENST00000542547.1
exon_skip_403251030739186:30739448:30740566:30740673:30747012:3074716530740566:30740673ENSG00000107968.5ENST00000263056.1,ENST00000375321.1,ENST00000542547.1
exon_skip_403261030740566:30740673:30747012:30747165:30748183:3074843030747012:30747165ENSG00000107968.5ENST00000263056.1,ENST00000375321.1,ENST00000542547.1
exon_skip_403271030747012:30747165:30748183:30748430:30749634:3074976530748183:30748430ENSG00000107968.5ENST00000263056.1,ENST00000375321.1,ENST00000542547.1

check button PSI values of skipped exons in TCGA.
psi tcga

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Exon skipping events with PSIs in GTEx for MAP3K8

check button Information of exkip skipping event in GTEx
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_403161030723172:30723307:30726104:30726335:30727844:3072820330726104:30726335ENSG00000107968.5ENST00000375322.2
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENSG00000107968.5ENST00000542547.1,ENST00000415139.1
exon_skip_403251030739186:30739448:30740566:30740673:30747012:3074716530740566:30740673ENSG00000107968.5ENST00000263056.1,ENST00000542547.1,ENST00000375321.1
exon_skip_403261030740566:30740673:30747012:30747165:30748183:3074843030747012:30747165ENSG00000107968.5ENST00000263056.1,ENST00000542547.1,ENST00000375321.1
exon_skip_403271030747012:30747165:30748183:30748430:30749634:3074976530748183:30748430ENSG00000107968.5ENST00000263056.1,ENST00000542547.1,ENST00000375321.1

check button PSI values of skipped exons in GTEx.
psi gtex

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for MAP3K8

check button Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST0000054254730727844307282035CDS-5UTR
ENST000002630563074056630740673Frame-shift
ENST000003753213074056630740673Frame-shift
ENST000005425473074056630740673Frame-shift
ENST000002630563074818330748430Frame-shift
ENST000003753213074818330748430Frame-shift
ENST000005425473074818330748430Frame-shift
ENST000002630563074701230747165In-frame
ENST000003753213074701230747165In-frame
ENST000005425473074701230747165In-frame

check button Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST0000054254730727844307282035CDS-5UTR
ENST000002630563074056630740673Frame-shift
ENST000003753213074056630740673Frame-shift
ENST000005425473074056630740673Frame-shift
ENST000002630563074818330748430Frame-shift
ENST000003753213074818330748430Frame-shift
ENST000005425473074818330748430Frame-shift
ENST000002630563074701230747165In-frame
ENST000003753213074701230747165In-frame
ENST000005425473074701230747165In-frame

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Infer the effects of exon skipping event on protein functional features for MAP3K8

check button Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.
prot feature distribution

check button Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000002630563113467307470123074716515701722291342
ENST00000375321253546730747012307471659911143291342
ENST000005425471699467307470123074716511521304291342

check button Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000002630563113467307470123074716515701722291342
ENST00000375321253546730747012307471659911143291342
ENST000005425471699467307470123074716511521304291342

check button Lost protein functional features of individual exon skipping events in TCGA.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
P412792913421467ChainID=PRO_0000024350;Note=Mitogen-activated protein kinase kinase kinase 8
P412792913421467ChainID=PRO_0000024350;Note=Mitogen-activated protein kinase kinase kinase 8
P412792913421467ChainID=PRO_0000024350;Note=Mitogen-activated protein kinase kinase kinase 8
P41279291342138388DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
P41279291342138388DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
P41279291342138388DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
P41279291342291293HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342291293HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342291293HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342296300HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342296300HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342296300HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342307322HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342307322HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342307322HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342340346HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342340346HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342340346HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342326330TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342326330TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342326330TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85


check button Lost protein functional features of individual exon skipping events in GTEx.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
P412792913421467ChainID=PRO_0000024350;Note=Mitogen-activated protein kinase kinase kinase 8
P412792913421467ChainID=PRO_0000024350;Note=Mitogen-activated protein kinase kinase kinase 8
P412792913421467ChainID=PRO_0000024350;Note=Mitogen-activated protein kinase kinase kinase 8
P41279291342138388DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
P41279291342138388DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
P41279291342138388DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
P41279291342291293HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342291293HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342291293HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342296300HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342296300HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342296300HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342307322HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342307322HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342307322HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342340346HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342340346HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342340346HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342326330TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342326330TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85
P41279291342326330TurnOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:4Y85


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SNVs in the skipped exons for MAP3K8

check button - Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.
lollipop

check button - Differential PSIs between mutated versus non-mutated samples.

check button - Non-synonymous mutations located in the skipped exons in TCGA.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
LIHCTCGA-G3-A3CJ-01exon_skip_40319
30727845307282033072798930727989Frame_Shift_DelT-p.V41fs
LIHCTCGA-DD-A1EG-01exon_skip_40325
30740567307406733074059230740592Frame_Shift_DelA-p.T264fs
LIHCTCGA-BC-A3KG-01exon_skip_40327
30748184307484303074832230748322Frame_Shift_DelA-p.N389fs
BLCATCGA-E7-A97Q-01exon_skip_40319
30727845307282033072801830728018Nonsense_MutationCTp.Q51*
LUADTCGA-49-6745-01exon_skip_40325
30740567307406733074062630740626Nonsense_MutationCTp.Q276*
ESCATCGA-JY-A6FH-01exon_skip_40325
30740567307406733074056630740566Splice_SiteGT.

check button - Depth of coverage in the three exons composing exon skipping event
Depth of coverage in three exonsMutation description

check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE30748184307484303074820030748201Frame_Shift_Ins-Ap.P349fs
NCIH1793_LUNG30727845307282033072788330727883Missense_MutationACp.T6P
JSC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE30727845307282033072793130727931Missense_MutationACp.N22H
CORL279_LUNG30727845307282033072796530727965Missense_MutationTGp.L33R
SW48_LARGE_INTESTINE30727845307282033072798630727986Missense_MutationCTp.A40V
SNU1033_LARGE_INTESTINE30727845307282033072803630728036Missense_MutationGAp.D57N
SQ1_LUNG30727845307282033072808130728081Missense_MutationTCp.W72R
769P_KIDNEY30727845307282033072808230728082Missense_MutationGTp.W72L
BT474_BREAST30740567307406733074061230740612Missense_MutationTAp.F271Y
HEC151_ENDOMETRIUM30740567307406733074065930740659Missense_MutationCAp.L287I
HCT116_LARGE_INTESTINE30748184307484303074821730748217Missense_MutationGAp.A354T
HS939T_SKIN30748184307484303074828330748283Missense_MutationCTp.R376C
OUMS23_LARGE_INTESTINE30748184307484303074831030748310Missense_MutationCTp.H385Y
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE30748184307484303074834730748347Missense_MutationGAp.R397H
ML1_THYROID30748184307484303074835430748354Missense_MutationGCp.Q399H
NCIH660_PROSTATE30748184307484303074835930748359Missense_MutationTGp.L401R
HEC108_ENDOMETRIUM30748184307484303074837930748379Missense_MutationCTp.R408C
SNU1040_LARGE_INTESTINE30748184307484303074837930748379Missense_MutationCTp.R408C
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE30740567307406733074066230740662Nonsense_MutationCTp.R288*

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for MAP3K8

check button sQTL information located at the skipped exons.
Exon skip IDChromosomeThree exonsSkippped exonENSTCancer typeSNP idLocationDNA change (ref/var)P-value
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1COADrs1042058chr10:30728101T/C3.42e-12
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1COADrs1042058chr10:30728101T/C3.42e-12
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1BLCArs1042058chr10:30728101T/C4.73e-09
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1BLCArs1042058chr10:30728101T/C4.74e-09
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1HNSCrs1042058chr10:30728101T/C1.24e-10
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1HNSCrs1042058chr10:30728101T/C1.24e-10
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1KIRPrs1042058chr10:30728101T/C1.20e-05
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1KIRPrs1042058chr10:30728101T/C1.20e-05
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1LGGrs1042058chr10:30728101T/C8.58e-08
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1LGGrs1042058chr10:30728101T/C8.58e-08
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1KIRCrs1042058chr10:30728101T/C1.25e-18
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1KIRCrs1042058chr10:30728101T/C1.25e-18
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1LUADrs1042058chr10:30728101T/C1.67e-06
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1LUADrs1042058chr10:30728101T/C1.67e-06
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1LIHCrs1042058chr10:30728101T/C1.97e-04
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1LIHCrs1042058chr10:30728101T/C1.97e-04
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1LUSCrs1042058chr10:30728101T/C8.94e-12
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1LUSCrs1042058chr10:30728101T/C8.94e-12
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1OVrs1042058chr10:30728101T/C8.57e-09
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1OVrs1042058chr10:30728101T/C8.57e-09
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1READrs1042058chr10:30728101T/C1.88e-04
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1READrs1042058chr10:30728101T/C1.88e-04
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1PAADrs1042058chr10:30728101T/C3.64e-09
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1PAADrs1042058chr10:30728101T/C3.64e-09
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1PRADrs1042058chr10:30728101T/C2.02e-10
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1PRADrs1042058chr10:30728101T/C2.64e-09
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1SARCrs1042058chr10:30728101T/C2.56e-06
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1SARCrs1042058chr10:30728101T/C2.56e-06
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1TGCTrs1042058chr10:30728101T/C4.40e-04
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1TGCTrs1042058chr10:30728101T/C4.40e-04
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1STADrs1042058chr10:30728101T/C6.53e-06
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1STADrs1042058chr10:30728101T/C6.53e-06
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1THCArs1042058chr10:30728101T/C1.39e-12
exon_skip_403191030723172:30723307:30727844:30728203:30736710:3073687830727844:30728203ENST00000415139.1,ENST00000542547.1THCArs1042058chr10:30728101T/C1.39e-12

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for MAP3K8


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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for MAP3K8


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RelatedDrugs for MAP3K8

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for MAP3K8

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource
MAP3K8C0023893Liver Cirrhosis, Experimental1CTD_human
MAP3K8C0151744Myocardial Ischemia1CTD_human