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| Open reading frame (ORF) annotation in the exon skipping event |
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| Splicing Quantitative Trait Loci (sQTLs) in the skipped exons |
| Splicing Quantitative Trait Methylation (sQTM) in the skipped exon |
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Gene summary for POSTN |
 Gene summary |
| Gene information | Gene symbol | POSTN | Gene ID | 10631 |
| Gene name | periostin | |
| Synonyms | OSF-2|OSF2|PDLPOSTN|PN | |
| Cytomap | 13q13.3 | |
| Type of gene | protein-coding | |
| Description | periostinosteoblast specific factor 2 (fasciclin I-like)periodontal ligament-specific periostinperiostin, osteoblast specific factor | |
| Modification date | 20180523 | |
| UniProtAcc | Q15063 | |
| Context | PubMed: POSTN [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract] - Title (PMID) |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
| POSTN | GO:0007155 | cell adhesion | 12235007 |
| POSTN | GO:0071307 | cellular response to vitamin K | 18450759 |
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Exon skipping events across known transcript of Ensembl for POSTN from UCSC genome browser |
| Skipped exons in TCGA and GTEx based on Ensembl gene isoform structure. * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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Gene isoform structures and expression levels for POSTN |
| Expression levels of gene isoforms across TCGA. |
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| Expression levels of gene isoforms across GTEx. |
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Exon skipping events with PSIs in TCGA for POSTN |
| Information of exkip skipping event in TCGA. |
| Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
| exon_skip_103033 | 13 | 38137469:38137507:38138655:38138697:38143880:38143927 | 38138655:38138697 | ENSG00000133110.10 | ENST00000473823.1,ENST00000379749.4,ENST00000541179.1 |
| exon_skip_103045 | 13 | 38138655:38138697:38143436:38143520:38143880:38143927 | 38143436:38143520 | ENSG00000133110.10 | ENST00000379742.4,ENST00000541481.1,ENST00000379747.4,ENST00000379743.4 |
| exon_skip_103047 | 13 | 38139384:38139633:38143436:38143520:38143880:38143927 | 38143436:38143520 | ENSG00000133110.10 | ENST00000474646.1 |
| exon_skip_103053 | 13 | 38143880:38143958:38144716:38144806:38145505:38145565 | 38144716:38144806 | ENSG00000133110.10 | ENST00000379749.4,ENST00000379747.4,ENST00000379743.4,ENST00000541179.1 |
| exon_skip_103056 | 13 | 38143880:38143958:38144716:38144806:38151889:38151934 | 38144716:38144806 | ENSG00000133110.10 | ENST00000379742.4 |
| exon_skip_103073 | 13 | 38144716:38144806:38145505:38145595:38148708:38148789 | 38145505:38145595 | ENSG00000133110.10 | ENST00000379749.4,ENST00000379747.4 |
| exon_skip_103075 | 13 | 38144716:38144806:38145505:38145595:38151889:38151934 | 38145505:38145595 | ENSG00000133110.10 | ENST00000379743.4,ENST00000541179.1 |
| exon_skip_103086 | 13 | 38145505:38145595:38148708:38148789:38151889:38151934 | 38148708:38148789 | ENSG00000133110.10 | ENST00000379749.4,ENST00000379747.4 |
| exon_skip_103092 | 13 | 38156502:38156651:38158105:38158240:38158852:38159065 | 38158105:38158240 | ENSG00000133110.10 | ENST00000379742.4,ENST00000379749.4,ENST00000541481.1,ENST00000379747.4,ENST00000379743.4,ENST00000541179.1 |
| exon_skip_103096 | 13 | 38160275:38160417:38160918:38161065:38161958:38162123 | 38160918:38161065 | ENSG00000133110.10 | ENST00000379742.4,ENST00000379749.4,ENST00000541481.1,ENST00000379747.4,ENST00000379743.4,ENST00000541179.1 |
| exon_skip_103098 | 13 | 38160918:38161065:38161958:38162123:38164508:38164666 | 38161958:38162123 | ENSG00000133110.10 | ENST00000379742.4,ENST00000379749.4,ENST00000541481.1,ENST00000379747.4,ENST00000379743.4,ENST00000541179.1 |
| exon_skip_103099 | 13 | 38166236:38166301:38171320:38171419:38172744:38172863 | 38171320:38171419 | ENSG00000133110.10 | ENST00000379742.4,ENST00000379749.4,ENST00000541481.1,ENST00000379747.4,ENST00000379743.4 |
| PSI values of skipped exons in TCGA. |
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Exon skipping events with PSIs in GTEx for POSTN |
| Information of exkip skipping event in GTEx |
| Exon skip ID | chr | Exons involved in exon skipping | Skipped exon | ENSG | ENSTs |
| exon_skip_103033 | 13 | 38137469:38137507:38138655:38138697:38143880:38143927 | 38138655:38138697 | ENSG00000133110.10 | ENST00000541179.1,ENST00000379749.4,ENST00000473823.1 |
| exon_skip_103045 | 13 | 38138655:38138697:38143436:38143520:38143880:38143927 | 38143436:38143520 | ENSG00000133110.10 | ENST00000379747.4,ENST00000379743.4,ENST00000379742.4,ENST00000541481.1 |
| exon_skip_103047 | 13 | 38139384:38139633:38143436:38143520:38143880:38143927 | 38143436:38143520 | ENSG00000133110.10 | ENST00000474646.1 |
| exon_skip_103053 | 13 | 38143880:38143958:38144716:38144806:38145505:38145565 | 38144716:38144806 | ENSG00000133110.10 | ENST00000541179.1,ENST00000379749.4,ENST00000379747.4,ENST00000379743.4 |
| exon_skip_103056 | 13 | 38143880:38143958:38144716:38144806:38151889:38151934 | 38144716:38144806 | ENSG00000133110.10 | ENST00000379742.4 |
| exon_skip_103073 | 13 | 38144716:38144806:38145505:38145595:38148708:38148789 | 38145505:38145595 | ENSG00000133110.10 | ENST00000379749.4,ENST00000379747.4 |
| exon_skip_103075 | 13 | 38144716:38144806:38145505:38145595:38151889:38151934 | 38145505:38145595 | ENSG00000133110.10 | ENST00000541179.1,ENST00000379743.4 |
| exon_skip_103086 | 13 | 38145505:38145595:38148708:38148789:38151889:38151934 | 38148708:38148789 | ENSG00000133110.10 | ENST00000379749.4,ENST00000379747.4 |
| exon_skip_103092 | 13 | 38156502:38156651:38158105:38158240:38158852:38159065 | 38158105:38158240 | ENSG00000133110.10 | ENST00000541179.1,ENST00000379749.4,ENST00000379747.4,ENST00000379743.4,ENST00000379742.4,ENST00000541481.1 |
| exon_skip_103096 | 13 | 38160275:38160417:38160918:38161065:38161958:38162123 | 38160918:38161065 | ENSG00000133110.10 | ENST00000541179.1,ENST00000379749.4,ENST00000379747.4,ENST00000379743.4,ENST00000379742.4,ENST00000541481.1 |
| exon_skip_103098 | 13 | 38160918:38161065:38161958:38162123:38164508:38164666 | 38161958:38162123 | ENSG00000133110.10 | ENST00000541179.1,ENST00000379749.4,ENST00000379747.4,ENST00000379743.4,ENST00000379742.4,ENST00000541481.1 |
| exon_skip_103099 | 13 | 38166236:38166301:38171320:38171419:38172744:38172863 | 38171320:38171419 | ENSG00000133110.10 | ENST00000379749.4,ENST00000379747.4,ENST00000379743.4,ENST00000379742.4,ENST00000541481.1 |
| PSI values of skipped exons in GTEx. |
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| * Skipped exon sequences. |
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Open reading frame (ORF) annotation in the exon skipping event for POSTN |
| Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms. |
| ENST | Start of skipped exon | End of skipped exon | ORF |
| ENST00000379747 | 38143436 | 38143520 | In-frame |
| ENST00000379747 | 38144716 | 38144806 | In-frame |
| ENST00000379747 | 38145505 | 38145595 | In-frame |
| ENST00000379747 | 38148708 | 38148789 | In-frame |
| ENST00000379747 | 38158105 | 38158240 | In-frame |
| ENST00000379747 | 38160918 | 38161065 | In-frame |
| ENST00000379747 | 38161958 | 38162123 | In-frame |
| ENST00000379747 | 38171320 | 38171419 | In-frame |
| Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms. |
| ENST | Start of skipped exon | End of skipped exon | ORF |
| ENST00000379747 | 38143436 | 38143520 | In-frame |
| ENST00000379747 | 38144716 | 38144806 | In-frame |
| ENST00000379747 | 38145505 | 38145595 | In-frame |
| ENST00000379747 | 38148708 | 38148789 | In-frame |
| ENST00000379747 | 38158105 | 38158240 | In-frame |
| ENST00000379747 | 38160918 | 38161065 | In-frame |
| ENST00000379747 | 38161958 | 38162123 | In-frame |
| ENST00000379747 | 38171320 | 38171419 | In-frame |
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Infer the effects of exon skipping event on protein functional features for POSTN |
| Exon skipping at the protein sequence level and followed lost functional features. * Click on the image to enlarge it in a new window. |
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| Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases. |
| ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
| ENST00000379747 | 3390 | 836 | 38171320 | 38171419 | 238 | 336 | 40 | 72 |
| ENST00000379747 | 3390 | 836 | 38161958 | 38162123 | 560 | 724 | 147 | 202 |
| ENST00000379747 | 3390 | 836 | 38160918 | 38161065 | 725 | 871 | 202 | 251 |
| ENST00000379747 | 3390 | 836 | 38158105 | 38158240 | 1227 | 1361 | 369 | 414 |
| ENST00000379747 | 3390 | 836 | 38148708 | 38148789 | 2127 | 2207 | 669 | 696 |
| ENST00000379747 | 3390 | 836 | 38145505 | 38145595 | 2208 | 2297 | 696 | 726 |
| ENST00000379747 | 3390 | 836 | 38144716 | 38144806 | 2298 | 2387 | 726 | 756 |
| ENST00000379747 | 3390 | 836 | 38143436 | 38143520 | 2466 | 2549 | 782 | 810 |
| Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases. |
| ENST | Length of mRNA | Length of AA seq. | Genomic start | Genomic end | mRNA start | mRNA end | AA start | AA end |
| ENST00000379747 | 3390 | 836 | 38171320 | 38171419 | 238 | 336 | 40 | 72 |
| ENST00000379747 | 3390 | 836 | 38161958 | 38162123 | 560 | 724 | 147 | 202 |
| ENST00000379747 | 3390 | 836 | 38160918 | 38161065 | 725 | 871 | 202 | 251 |
| ENST00000379747 | 3390 | 836 | 38158105 | 38158240 | 1227 | 1361 | 369 | 414 |
| ENST00000379747 | 3390 | 836 | 38148708 | 38148789 | 2127 | 2207 | 669 | 696 |
| ENST00000379747 | 3390 | 836 | 38145505 | 38145595 | 2208 | 2297 | 696 | 726 |
| ENST00000379747 | 3390 | 836 | 38144716 | 38144806 | 2298 | 2387 | 726 | 756 |
| ENST00000379747 | 3390 | 836 | 38143436 | 38143520 | 2466 | 2549 | 782 | 810 |
| Lost protein functional features of individual exon skipping events in TCGA. |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
| Lost protein functional features of individual exon skipping events in GTEx. |
| UniProt acc. | Start of exon skipping (AA) | End of exon skipping (AA) | Protein feature start (AA) | Protein feature end (AA) | Category of protein feature | Description of feature |
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SNVs in the skipped exons for POSTN |
| - Lollipop plot for presenting exon skipping associated SNVs. * Click on the image to enlarge it in a new window. |
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| - Differential PSIs between mutated versus non-mutated samples. |
POSTN_LUAD_exon_skip_103086_psi_boxplot.png |
| - Non-synonymous mutations located in the skipped exons in TCGA. |
| Cancer type | Sample | ESID | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
| LIHC | TCGA-G3-A3CJ-01 | exon_skip_103053 exon_skip_103056 | 38144717 | 38144806 | 38144780 | 38144780 | Frame_Shift_Del | T | - | p.I737fs |
| STAD | TCGA-HU-A4GQ-01 | exon_skip_103053 exon_skip_103056 | 38144717 | 38144806 | 38144790 | 38144790 | Frame_Shift_Del | T | - | p.Y733fs |
| STAD | TCGA-HU-A4GX-01 | exon_skip_103053 exon_skip_103056 | 38144717 | 38144806 | 38144790 | 38144790 | Frame_Shift_Del | T | - | p.Y733fs |
| UCS | TCGA-N7-A4Y0-01 | exon_skip_103053 exon_skip_103056 | 38144717 | 38144806 | 38144790 | 38144790 | Frame_Shift_Del | T | - | p.K732fs |
| UCS | TCGA-N7-A4Y0-01 | exon_skip_103053 exon_skip_103056 | 38144717 | 38144806 | 38144790 | 38144790 | Frame_Shift_Del | T | - | p.Y733fs |
| LIHC | TCGA-DD-A1EG-01 | exon_skip_103075 exon_skip_103073 | 38145506 | 38145595 | 38145572 | 38145572 | Frame_Shift_Del | T | - | p.I705fs |
| LIHC | TCGA-DD-A1EG-01 | exon_skip_103075 exon_skip_103073 | 38145506 | 38145595 | 38145579 | 38145579 | Frame_Shift_Del | T | - | p.K702fs |
| LUAD | TCGA-91-6828-01 | exon_skip_103086 | 38148709 | 38148789 | 38148759 | 38148759 | Frame_Shift_Del | G | - | p.P680fs |
| LIHC | TCGA-DD-A39Y-01 | exon_skip_103098 | 38161959 | 38162123 | 38161981 | 38161981 | Frame_Shift_Del | A | - | p.F195fs |
| UCEC | TCGA-AP-A0LE-01 | exon_skip_103098 | 38161959 | 38162123 | 38162023 | 38162023 | Frame_Shift_Del | T | - | p.N181fs |
| LIHC | TCGA-DD-A39Y-01 | exon_skip_103098 | 38161959 | 38162123 | 38162077 | 38162077 | Frame_Shift_Del | T | - | p.N163fs |
| STAD | TCGA-BR-7851-01 | exon_skip_103099 | 38171321 | 38171419 | 38171342 | 38171342 | Frame_Shift_Del | T | - | p.K66fs |
| OV | TCGA-24-0982-01 | exon_skip_103033 | 38138656 | 38138697 | 38138662 | 38138663 | Frame_Shift_Ins | - | T | p.V822fs |
| LUSC | TCGA-66-2766-01 | exon_skip_103033 | 38138656 | 38138697 | 38138674 | 38138675 | Frame_Shift_Ins | - | T | p.Q818fs |
| UCEC | TCGA-AP-A056-01 | exon_skip_103053 exon_skip_103056 | 38144717 | 38144806 | 38144729 | 38144729 | Nonsense_Mutation | G | A | p.R753* |
| UCEC | TCGA-B5-A11N-01 | exon_skip_103096 | 38160919 | 38161065 | 38161044 | 38161044 | Nonsense_Mutation | G | A | p.R210* |
| HNSC | TCGA-CN-6010-01 | exon_skip_103033 | 38138656 | 38138697 | 38138655 | 38138655 | Splice_Site | C | T | p.G825_splice |
| LUSC | TCGA-34-5231-01 | exon_skip_103047 exon_skip_103045 | 38143437 | 38143520 | 38143436 | 38143436 | Splice_Site | C | T | p.D811_splice |
| HNSC | TCGA-CR-7388-01 | exon_skip_103047 exon_skip_103045 | 38143437 | 38143520 | 38143521 | 38143521 | Splice_Site | C | T | p.E783_splice |
| LGG | TCGA-HT-A615-01 | exon_skip_103099 | 38171321 | 38171419 | 38171320 | 38171320 | Splice_Site | C | T | . |
| - Depth of coverage in the three exons composing exon skipping event |
| Depth of coverage in three exons | Mutation description |
 | Sample: TCGA-91-6828-01 |
| Cancer type: LUAD | |
| ESID: exon_skip_103086 | |
| Skipped exon start: 38148709 | |
| Skipped exon end: 38148789 | |
| Mutation start: 38148759 | |
| Mutation end: 38148759 | |
| Mutation type: Frame_Shift_Del | |
| Reference seq: G | |
| Mutation seq: - | |
| AAchange: p.P680fs | |
exon_skip_103086_LUAD_TCGA-91-6828-01.png | |
exon_skip_73571_LUAD_TCGA-91-6828-01.png | |
 | Sample: TCGA-DD-A1EG-01 |
| Cancer type: LIHC | |
| ESID: exon_skip_103073 | |
| Skipped exon start: 38145506 | |
| Skipped exon end: 38145595 | |
| Mutation start: 38145572 | |
| Mutation end: 38145572 | |
| Mutation type: Frame_Shift_Del | |
| Reference seq: T | |
| Mutation seq: - | |
| AAchange: p.I705fs | |
| Sample: TCGA-DD-A1EG-01 |
| Cancer type: LIHC | |
| ESID: exon_skip_103073 | |
| Skipped exon start: 38145506 | |
| Skipped exon end: 38145595 | |
| Mutation start: 38145579 | |
| Mutation end: 38145579 | |
| Mutation type: Frame_Shift_Del | |
| Reference seq: T | |
| Mutation seq: - | |
| AAchange: p.K702fs | |
exon_skip_103075_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_100809_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_101656_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_10700_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_109033_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_110000_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_110381_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_110545_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_11218_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_11256_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_11259_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_11263_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_115462_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_115587_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_116330_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_121002_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_123667_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_12440_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_125045_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_129202_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_129996_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_130099_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_13071_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_131505_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_131697_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_133542_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_133548_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_134792_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_135418_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_135741_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_135763_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_135820_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_13608_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_138255_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_138373_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_138947_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_140996_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_141914_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_143553_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_143841_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_143843_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_144075_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_144116_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_144125_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_146762_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_146776_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_146807_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_14772_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_148738_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_148740_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_14897_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_14899_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_15042_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_150985_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_153494_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_155021_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_16928_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_17317_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_17318_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_17943_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_18708_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_19048_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_1906_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_19372_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_19902_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_20061_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_22876_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_2523_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_26461_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_27038_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_27065_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_283878_LIHC_TCGA-DD-A1EG-01.png | |
exon_skip_284109_LIHC_TCGA-DD-A1EG-01.png | |
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 | Sample: TCGA-CR-7388-01 |
| Cancer type: HNSC | |
| ESID: exon_skip_103045 | |
| Skipped exon start: 38143437 | |
| Skipped exon end: 38143520 | |
| Mutation start: 38143521 | |
| Mutation end: 38143521 | |
| Mutation type: Splice_Site | |
| Reference seq: C | |
| Mutation seq: T | |
| AAchange: p.E783_splice | |
exon_skip_103045_HNSC_TCGA-CR-7388-01.png | |
exon_skip_343928_HNSC_TCGA-CR-7388-01.png | |
 | Sample: TCGA-34-5231-01 |
| Cancer type: LUSC | |
| ESID: exon_skip_103045 | |
| Skipped exon start: 38143437 | |
| Skipped exon end: 38143520 | |
| Mutation start: 38143436 | |
| Mutation end: 38143436 | |
| Mutation type: Splice_Site | |
| Reference seq: C | |
| Mutation seq: T | |
| AAchange: p.D811_splice | |
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| - Non-synonymous mutations located in the skipped exons in CCLE. |
| Sample | Skipped exon start | Skipped exon end | Mutation start | Mutation end | Mutation type | Reference seq | Mutation seq | AAchange |
| CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 38138656 | 38138697 | 38138663 | 38138663 | Frame_Shift_Del | T | - | p.K822fs |
| KARPAS45_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 38144717 | 38144806 | 38144790 | 38144790 | Frame_Shift_Del | T | - | p.K732fs |
| DV90_LUNG | 38161959 | 38162123 | 38162023 | 38162023 | Frame_Shift_Del | T | - | p.N181fs |
| G402_SOFT_TISSUE | 38138656 | 38138697 | 38138662 | 38138663 | Frame_Shift_Ins | - | T | p.V823fs |
| SUIT2_PANCREAS | 38138656 | 38138697 | 38138667 | 38138667 | Missense_Mutation | T | C | p.K821R |
| SNU81_LARGE_INTESTINE | 38143437 | 38143520 | 38143451 | 38143451 | Missense_Mutation | C | A | p.R806I |
| HS606T_FIBROBLAST | 38143437 | 38143520 | 38143509 | 38143509 | Missense_Mutation | C | A | p.V787F |
| AGS_STOMACH | 38143437 | 38143520 | 38143515 | 38143515 | Missense_Mutation | T | C | p.T785A |
| HT115_LARGE_INTESTINE | 38144717 | 38144806 | 38144728 | 38144728 | Missense_Mutation | C | T | p.R753Q |
| KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 38144717 | 38144806 | 38144803 | 38144803 | Missense_Mutation | G | A | p.P728L |
| CORL95_LUNG | 38145506 | 38145595 | 38145510 | 38145510 | Missense_Mutation | A | C | p.H725Q |
| LNCAPCLONEFGC_PROSTATE | 38145506 | 38145595 | 38145512 | 38145512 | Missense_Mutation | G | A | p.H725Y |
| SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE | 38145506 | 38145595 | 38145515 | 38145515 | Missense_Mutation | T | C | p.I724V |
| SNUC1_LARGE_INTESTINE | 38145506 | 38145595 | 38145563 | 38145563 | Missense_Mutation | C | T | p.E708K |
| NCIH2286_LUNG | 38145506 | 38145595 | 38145592 | 38145592 | Missense_Mutation | G | T | p.P698H |
| BICR18_UPPER_AERODIGESTIVE_TRACT | 38148709 | 38148789 | 38148742 | 38148742 | Missense_Mutation | C | G | p.E686Q |
| SNU81_LARGE_INTESTINE | 38158106 | 38158240 | 38158231 | 38158231 | Missense_Mutation | A | C | p.V373G |
| NCIH1437_LUNG | 38160919 | 38161065 | 38160968 | 38160968 | Missense_Mutation | G | T | p.T235N |
| SNUC2A_LARGE_INTESTINE | 38160919 | 38161065 | 38160969 | 38160969 | Missense_Mutation | T | C | p.T235A |
| SNUC2B_LARGE_INTESTINE | 38160919 | 38161065 | 38160969 | 38160969 | Missense_Mutation | T | C | p.T235A |
| LI7_LIVER | 38160919 | 38161065 | 38160993 | 38160993 | Missense_Mutation | C | A | p.D227Y |
| KOSC2_UPPER_AERODIGESTIVE_TRACT | 38161959 | 38162123 | 38162021 | 38162021 | Missense_Mutation | C | T | p.G182S |
| HARA_LUNG | 38161959 | 38162123 | 38162106 | 38162106 | Missense_Mutation | C | G | p.L153F |
| HEC59_ENDOMETRIUM | 38161959 | 38162123 | 38162117 | 38162117 | Missense_Mutation | G | A | p.R150C |
| MERO83_LUNG | 38171321 | 38171419 | 38171358 | 38171358 | Missense_Mutation | T | G | p.K61Q |
| NCIH522_LUNG | 38171321 | 38171419 | 38171360 | 38171360 | Missense_Mutation | C | A | p.C60F |
| 22RV1_PROSTATE | 38171321 | 38171419 | 38171381 | 38171381 | Missense_Mutation | T | A | p.K53I |
| CW2_LARGE_INTESTINE | 38144717 | 38144806 | 38144729 | 38144729 | Nonsense_Mutation | G | A | p.R753* |
| NUGC3_STOMACH | 38143437 | 38143520 | 38143437 | 38143437 | Splice_Site | C | A | p.D811Y |
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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for POSTN |
| sQTL information located at the skipped exons. |
| Exon skip ID | Chromosome | Three exons | Skippped exon | ENST | Cancer type | SNP id | Location | DNA change (ref/var) | P-value |
| exon_skip_103033 | 13 | 38137469:38137507:38138655:38138697:38143880:38143927 | 38138655:38138697 | ENST00000473823.1,ENST00000379749.4,ENST00000541179.1 | LUAD | rs9547952 | chr13:38138689 | C/T | 1.03e-04 |
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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for POSTN |
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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for POSTN |
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RelatedDrugs for POSTN |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for POSTN |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
| POSTN | C0006287 | Bronchopulmonary Dysplasia | 1 | CTD_human |
| POSTN | C0009404 | Colorectal Neoplasms | 1 | CTD_human |
| POSTN | C0013182 | Drug Allergy | 1 | CTD_human |
| POSTN | C0013264 | Muscular Dystrophy, Duchenne | 1 | CTD_human |
| POSTN | C1319853 | Asthma, Aspirin-Induced | 1 | CTD_human |
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