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Center for Computational Systems Medicine
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Gene summary

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Gene structures and expression levels

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Exon skipping events with PSIs in TCGA

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Exon skipping events with PSIs in GTEx

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Open reading frame (ORF) annotation in the exon skipping event

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Exon skipping events in the canonical protein sequence

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SNVs in the skipped exons with depth of coverage

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Splicing Quantitative Trait Loci (sQTLs) in the skipped exons

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon

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Related drugs with this gene

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Related diseases with this gene

Gene summary for MPHOSPH9

check button Gene summary
Gene informationGene symbol

MPHOSPH9

Gene ID

10198

Gene nameM-phase phosphoprotein 9
SynonymsMPP-9|MPP9
Cytomap

12q24.31

Type of geneprotein-coding
DescriptionM-phase phosphoprotein 9
Modification date20180519
UniProtAcc

Q99550

ContextPubMed: MPHOSPH9 [Title/Abstract] AND exon [Title/Abstract] AND skip [Title/Abstract]
- Title (PMID)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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Exon skipping events across known transcript of Ensembl for MPHOSPH9 from UCSC genome browser

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

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Gene isoform structures and expression levels for MPHOSPH9

check button Expression levels of gene isoforms across TCGA.
gencode gene structure

check button Expression levels of gene isoforms across GTEx.
gencode gene structure


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Exon skipping events with PSIs in TCGA for MPHOSPH9

check button Information of exkip skipping event in TCGA.
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_9817812123645814:123645930:123646661:123646739:123647560:123647583123646661:123646739ENSG00000051825.10ENST00000606704.1
exon_skip_9818012123645814:123645930:123646661:123646765:123647560:123647583123646661:123646765ENSG00000051825.10ENST00000392425.3,ENST00000536198.1,ENST00000541076.2,ENST00000545556.2,ENST00000606320.1,ENST00000541603.2,ENST00000302349.5
exon_skip_9818212123645814:123645930:123647560:123647681:123648496:123648508123647560:123647681ENSG00000051825.10ENST00000539024.1,ENST00000302373.4
exon_skip_9818412123646661:123646765:123647560:123647681:123648496:123648508123647560:123647681ENSG00000051825.10ENST00000392425.3,ENST00000541076.2,ENST00000545556.2,ENST00000606320.1,ENST00000541603.2,ENST00000302349.5
exon_skip_9818512123647630:123647681:123648496:123648637:123649848:123650009123648496:123648637ENSG00000051825.10ENST00000392425.3,ENST00000541076.2,ENST00000539024.1,ENST00000302373.4,ENST00000545556.2,ENST00000606320.1,ENST00000607619.1,ENST00000302349.5,ENST00000538250.1
exon_skip_9818612123648496:123648637:123649848:123650024:123651201:123651336123649848:123650024ENSG00000051825.10ENST00000392425.3,ENST00000541076.2,ENST00000539024.1,ENST00000302373.4,ENST00000545556.2,ENST00000606320.1,ENST00000606321.1,ENST00000302349.5
exon_skip_9818812123651201:123651336:123661234:123661336:123664472:123664527123661234:123661336ENSG00000051825.10ENST00000392425.3,ENST00000541076.2,ENST00000539024.1,ENST00000302373.4,ENST00000545556.2,ENST00000606320.1,ENST00000541823.1,ENST00000302349.5
exon_skip_9818912123679055:123679148:123682793:123682881:123686710:123686866123682793:123682881ENSG00000051825.10ENST00000392425.3,ENST00000541076.2,ENST00000606326.1,ENST00000539024.1,ENST00000302373.4,ENST00000545556.2,ENST00000606320.1,ENST00000302349.5
exon_skip_9819012123682793:123682881:123686710:123686866:123687170:123687631123686710:123686866ENSG00000051825.10ENST00000392425.3,ENST00000541076.2,ENST00000539024.1,ENST00000302373.4,ENST00000606320.1,ENST00000302349.5
exon_skip_9819112123687431:123687631:123687796:123687922:123694602:123694709123687796:123687922ENSG00000051825.10ENST00000392425.3,ENST00000541076.2,ENST00000539336.2,ENST00000606320.1,ENST00000302349.5
exon_skip_9819212123687796:123687922:123694602:123694709:123699290:123699381123694602:123694709ENSG00000051825.10ENST00000392425.3,ENST00000541076.2,ENST00000539336.2,ENST00000545556.2,ENST00000606320.1,ENST00000302349.5
exon_skip_9819312123694602:123694709:123699290:123699381:123702922:123703025123699290:123699381ENSG00000051825.10ENST00000392425.3,ENST00000541076.2,ENST00000539024.1,ENST00000302373.4,ENST00000539336.2,ENST00000606320.1,ENST00000302349.5
exon_skip_9819412123694602:123694709:123699290:123699381:123702945:123703046123699290:123699381ENSG00000051825.10ENST00000545556.2
exon_skip_9819812123699290:123699381:123702922:123703046:123705918:123706270123702922:123703046ENSG00000051825.10ENST00000392425.3,ENST00000541076.2,ENST00000302373.4,ENST00000539336.2,ENST00000606320.1,ENST00000302349.5
exon_skip_9820012123699290:123699381:123702945:123703046:123705918:123706270123702945:123703046ENSG00000051825.10ENST00000545556.2
exon_skip_9820312123706239:123706270:123707584:123707674:123712009:123712119123707584:123707674ENSG00000051825.10ENST00000541437.1
exon_skip_9820612123706389:123706442:123707584:123707674:123712009:123712119123707584:123707674ENSG00000051825.10ENST00000535049.1,ENST00000606320.1
exon_skip_9820712123706389:123706442:123707584:123707674:123714807:123714993123707584:123707674ENSG00000051825.10ENST00000539639.1
exon_skip_9821012123706389:123706442:123712009:123712163:123714807:123714993123712009:123712163ENSG00000051825.10ENST00000541076.2
exon_skip_9821712123707584:123707674:123710834:123710898:123712009:123712119123710834:123710898ENSG00000051825.10ENST00000545556.2
exon_skip_9822012123707584:123707674:123712009:123712119:123714807:123714961123712009:123712119ENSG00000051825.10ENST00000535049.1
exon_skip_9822212123707584:123707674:123712009:123712163:123714807:123714961123712009:123712163ENSG00000051825.10ENST00000606320.1,ENST00000541437.1
exon_skip_9822312123707584:123707674:123712092:123712163:123714807:123714961123712092:123712163ENSG00000051825.10ENST00000538169.1
exon_skip_9822612123710834:123710898:123712009:123712163:123714807:123714993123712009:123712163ENSG00000051825.10ENST00000545556.2

check button PSI values of skipped exons in TCGA.
psi tcga

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Exon skipping events with PSIs in GTEx for MPHOSPH9

check button Information of exkip skipping event in GTEx
Exon skip IDchrExons involved in exon skippingSkipped exonENSGENSTs
exon_skip_9817812123645814:123645930:123646661:123646739:123647560:123647583123646661:123646739ENSG00000051825.10ENST00000606704.1
exon_skip_9818012123645814:123645930:123646661:123646765:123647560:123647583123646661:123646765ENSG00000051825.10ENST00000541603.2,ENST00000302349.5,ENST00000541076.2,ENST00000606320.1,ENST00000392425.3,ENST00000545556.2,ENST00000536198.1
exon_skip_9818212123645814:123645930:123647560:123647681:123648496:123648508123647560:123647681ENSG00000051825.10ENST00000302373.4,ENST00000539024.1
exon_skip_9818412123646661:123646765:123647560:123647681:123648496:123648508123647560:123647681ENSG00000051825.10ENST00000541603.2,ENST00000302349.5,ENST00000541076.2,ENST00000606320.1,ENST00000392425.3,ENST00000545556.2
exon_skip_9818512123647630:123647681:123648496:123648637:123649848:123650009123648496:123648637ENSG00000051825.10ENST00000302349.5,ENST00000541076.2,ENST00000606320.1,ENST00000392425.3,ENST00000302373.4,ENST00000545556.2,ENST00000539024.1,ENST00000538250.1,ENST00000607619.1
exon_skip_9818612123648496:123648637:123649848:123650024:123651201:123651336123649848:123650024ENSG00000051825.10ENST00000302349.5,ENST00000541076.2,ENST00000606320.1,ENST00000392425.3,ENST00000302373.4,ENST00000545556.2,ENST00000539024.1,ENST00000606321.1
exon_skip_9818812123651201:123651336:123661234:123661336:123664472:123664527123661234:123661336ENSG00000051825.10ENST00000302349.5,ENST00000541076.2,ENST00000606320.1,ENST00000392425.3,ENST00000302373.4,ENST00000545556.2,ENST00000539024.1,ENST00000541823.1
exon_skip_9818912123679055:123679148:123682793:123682881:123686710:123686866123682793:123682881ENSG00000051825.10ENST00000302349.5,ENST00000541076.2,ENST00000606320.1,ENST00000392425.3,ENST00000302373.4,ENST00000545556.2,ENST00000539024.1,ENST00000606326.1
exon_skip_9819012123682793:123682881:123686710:123686866:123687170:123687631123686710:123686866ENSG00000051825.10ENST00000302349.5,ENST00000541076.2,ENST00000606320.1,ENST00000392425.3,ENST00000302373.4,ENST00000539024.1
exon_skip_9819112123687431:123687631:123687796:123687922:123694602:123694709123687796:123687922ENSG00000051825.10ENST00000302349.5,ENST00000541076.2,ENST00000606320.1,ENST00000392425.3,ENST00000539336.2
exon_skip_9819212123687796:123687922:123694602:123694709:123699290:123699381123694602:123694709ENSG00000051825.10ENST00000302349.5,ENST00000541076.2,ENST00000606320.1,ENST00000392425.3,ENST00000545556.2,ENST00000539336.2
exon_skip_9819312123694602:123694709:123699290:123699381:123702922:123703025123699290:123699381ENSG00000051825.10ENST00000302349.5,ENST00000541076.2,ENST00000606320.1,ENST00000392425.3,ENST00000302373.4,ENST00000539024.1,ENST00000539336.2
exon_skip_9819412123694602:123694709:123699290:123699381:123702945:123703046123699290:123699381ENSG00000051825.10ENST00000545556.2
exon_skip_9819812123699290:123699381:123702922:123703046:123705918:123706270123702922:123703046ENSG00000051825.10ENST00000302349.5,ENST00000541076.2,ENST00000606320.1,ENST00000392425.3,ENST00000302373.4,ENST00000539336.2
exon_skip_9820012123699290:123699381:123702945:123703046:123705918:123706270123702945:123703046ENSG00000051825.10ENST00000545556.2
exon_skip_9820312123706239:123706270:123707584:123707674:123712009:123712119123707584:123707674ENSG00000051825.10ENST00000541437.1
exon_skip_9820612123706389:123706442:123707584:123707674:123712009:123712119123707584:123707674ENSG00000051825.10ENST00000606320.1,ENST00000535049.1
exon_skip_9820712123706389:123706442:123707584:123707674:123714807:123714993123707584:123707674ENSG00000051825.10ENST00000539639.1
exon_skip_9821012123706389:123706442:123712009:123712163:123714807:123714993123712009:123712163ENSG00000051825.10ENST00000541076.2
exon_skip_9821712123707584:123707674:123710834:123710898:123712009:123712119123710834:123710898ENSG00000051825.10ENST00000545556.2
exon_skip_9822012123707584:123707674:123712009:123712119:123714807:123714961123712009:123712119ENSG00000051825.10ENST00000535049.1
exon_skip_9822212123707584:123707674:123712009:123712163:123714807:123714961123712009:123712163ENSG00000051825.10ENST00000606320.1,ENST00000541437.1
exon_skip_9822312123707584:123707674:123712092:123712163:123714807:123714961123712092:123712163ENSG00000051825.10ENST00000538169.1

check button PSI values of skipped exons in GTEx.
psi gtex

* Skipped exon sequences.

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Open reading frame (ORF) annotation in the exon skipping event for MPHOSPH9

check button Open reading frame (ORF) of individual exon skipping events in TCGA based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST00000606320123646661123646765Frame-shift
ENST00000606320123647560123647681Frame-shift
ENST00000606320123649848123650024Frame-shift
ENST00000606320123682793123682881Frame-shift
ENST00000606320123694602123694709Frame-shift
ENST00000606320123699290123699381Frame-shift
ENST00000606320123702922123703046Frame-shift
ENST00000606320123712009123712163Frame-shift
ENST00000606320123648496123648637In-frame
ENST00000606320123661234123661336In-frame
ENST00000606320123686710123686866In-frame
ENST00000606320123687796123687922In-frame
ENST00000606320123707584123707674In-frame

check button Open reading frame (ORF) of individual exon skipping events in GTEx based on the Ensembl gene structure combined from isoforms.
ENSTStart of skipped exonEnd of skipped exonORF
ENST00000606320123646661123646765Frame-shift
ENST00000606320123647560123647681Frame-shift
ENST00000606320123649848123650024Frame-shift
ENST00000606320123682793123682881Frame-shift
ENST00000606320123694602123694709Frame-shift
ENST00000606320123699290123699381Frame-shift
ENST00000606320123702922123703046Frame-shift
ENST00000606320123712009123712163Frame-shift
ENST00000606320123648496123648637In-frame
ENST00000606320123661234123661336In-frame
ENST00000606320123686710123686866In-frame
ENST00000606320123687796123687922In-frame
ENST00000606320123707584123707674In-frame

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Infer the effects of exon skipping event on protein functional features for MPHOSPH9

check button Exon skipping at the protein sequence level and followed lost functional features.
* Click on the image to enlarge it in a new window.
prot feature distribution

check button Loci of skipped exons in TCGA across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000006063206368118312370758412370767446655586116
ENST000006063206368118312368779612368792214021527398440
ENST000006063206368118312368671012368686619892144594645
ENST000006063206368118312366123412366133625622663785818
ENST000006063206368118312364849612364863729753115922969

check button Loci of skipped exons in GTEx across genomic, transcript, and protein sequence levels of In-frame cases.
ENSTLength of mRNALength of AA seq.Genomic startGenomic endmRNA startmRNA endAA startAA end
ENST000006063206368118312370758412370767446655586116
ENST000006063206368118312368779612368792214021527398440
ENST000006063206368118312368671012368686619892144594645
ENST000006063206368118312366123412366133625622663785818
ENST000006063206368118312364849612364863729753115922969

check button Lost protein functional features of individual exon skipping events in TCGA.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q995508611611183ChainID=PRO_0000096557;Note=M-phase phosphoprotein 9
Q9955039844011183ChainID=PRO_0000096557;Note=M-phase phosphoprotein 9
Q9955059464511183ChainID=PRO_0000096557;Note=M-phase phosphoprotein 9
Q99550594645609804Coiled coilOntology_term=ECO:0000255;evidence=ECO:0000255
Q9955078581811183ChainID=PRO_0000096557;Note=M-phase phosphoprotein 9
Q99550785818609804Coiled coilOntology_term=ECO:0000255;evidence=ECO:0000255
Q9955092296911183ChainID=PRO_0000096557;Note=M-phase phosphoprotein 9
Q99550922969947947Sequence conflictNote=K->E;Ontology_term=ECO:0000305;evidence=ECO:0000305


check button Lost protein functional features of individual exon skipping events in GTEx.
UniProt acc.Start of exon skipping (AA)End of exon skipping (AA)Protein feature start (AA)Protein feature end (AA)Category of protein featureDescription of feature
Q995508611611183ChainID=PRO_0000096557;Note=M-phase phosphoprotein 9
Q9955039844011183ChainID=PRO_0000096557;Note=M-phase phosphoprotein 9
Q9955059464511183ChainID=PRO_0000096557;Note=M-phase phosphoprotein 9
Q99550594645609804Coiled coilOntology_term=ECO:0000255;evidence=ECO:0000255
Q9955078581811183ChainID=PRO_0000096557;Note=M-phase phosphoprotein 9
Q99550785818609804Coiled coilOntology_term=ECO:0000255;evidence=ECO:0000255
Q9955092296911183ChainID=PRO_0000096557;Note=M-phase phosphoprotein 9
Q99550922969947947Sequence conflictNote=K->E;Ontology_term=ECO:0000305;evidence=ECO:0000305


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SNVs in the skipped exons for MPHOSPH9

check button - Lollipop plot for presenting exon skipping associated SNVs.
* Click on the image to enlarge it in a new window.
lollipop

check button - Differential PSIs between mutated versus non-mutated samples.

check button - Non-synonymous mutations located in the skipped exons in TCGA.
Cancer typeSampleESIDSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
LIHCTCGA-DD-A1EG-01exon_skip_98185
123648497123648637123648586123648586Frame_Shift_DelT-p.K940fs
BLCATCGA-GU-AATP-01exon_skip_98186
123649849123650024123649869123649872Frame_Shift_DelTCTG-p.TE915fs
STADTCGA-B7-A5TI-01exon_skip_98186
123649849123650024123649959123649959Frame_Shift_DelT-p.K886fs
LIHCTCGA-G3-A3CJ-01exon_skip_98191
123687797123687922123687813123687813Frame_Shift_DelG-p.P435fs
READTCGA-AG-A011-01exon_skip_98186
123649849123650024123649915123649915Nonsense_MutationCAp.E749X
STADTCGA-BR-8680-01exon_skip_98186
123649849123650024123649915123649915Nonsense_MutationCAp.E749*
STADTCGA-BR-8680-01exon_skip_98186
123649849123650024123649915123649915Nonsense_MutationCAp.E749X
UCECTCGA-D1-A17Q-01exon_skip_98186
123649849123650024123649915123649915Nonsense_MutationCAp.E749*
BRCATCGA-BH-A0HP-01exon_skip_98191
123687797123687922123687907123687907Nonsense_MutationCAp.E252*
LUADTCGA-17-Z031-01exon_skip_98192
123694603123694709123694650123694650Nonsense_MutationCAp.E383*
SKCMTCGA-D3-A3MV-06exon_skip_98180
123646662123646765123646767123646767Splice_SiteTA.
COADTCGA-AD-6889-01exon_skip_98192
123694603123694709123694601123694601Splice_SiteAG.
UCSTCGA-N8-A4PQ-01exon_skip_98200
exon_skip_98198
123702923123703046123703047123703047Splice_SiteCA.
UCSTCGA-N8-A4PQ-01exon_skip_98200
exon_skip_98198
123702946123703046123703047123703047Splice_SiteCA.

check button - Depth of coverage in the three exons composing exon skipping event
Depth of coverage in three exonsMutation description

check button - Non-synonymous mutations located in the skipped exons in CCLE.
SampleSkipped exon startSkipped exon endMutation startMutation endMutation typeReference seqMutation seqAAchange
2313287_STOMACH123687797123687922123687866123687866Frame_Shift_DelT-p.K417fs
OVK18_OVARY123646662123646765123646704123646704Missense_MutationGTp.P1031T
OVK18_OVARY123646662123646739123646704123646704Missense_MutationGTp.P1031T
JHUEM7_ENDOMETRIUM123646662123646765123646743123646743Missense_MutationACp.L1018V
JHUEM7_ENDOMETRIUM123646662123646739123646743123646743Missense_MutationACp.L1018V
NCIBL128_MATCHED_NORMAL_TISSUE123647561123647681123647622123647622Missense_MutationTCp.K990E
HEC1_ENDOMETRIUM123647561123647681123647633123647633Missense_MutationTCp.K986R
LNCAPCLONEFGC_PROSTATE123649849123650024123649935123649935Missense_MutationGAp.P894L
HCC2998_LARGE_INTESTINE123661235123661336123661250123661250Missense_MutationCTp.R814K
SNUC5_LARGE_INTESTINE123661235123661336123661271123661271Missense_MutationTCp.H807R
SW837_LARGE_INTESTINE123682794123682881123682856123682856Missense_MutationGAp.H655Y
TCYIK_CERVIX123686711123686866123686807123686807Missense_MutationTCp.Y614C
UBLC1_URINARY_TRACT123687797123687922123687841123687841Missense_MutationCGp.E426Q
DOV13_OVARY123694603123694709123694620123694620Missense_MutationCGp.D393H
HS294T_SKIN123694603123694709123694620123694620Missense_MutationCGp.D393H
JHUEM7_ENDOMETRIUM123694603123694709123694657123694657Missense_MutationTGp.E380D
SF172_CENTRAL_NERVOUS_SYSTEM123694603123694709123694662123694662Missense_MutationGAp.P379S
SNU1033_LARGE_INTESTINE123694603123694709123694700123694700Missense_MutationTGp.Y366S
KPNRTBM1_AUTONOMIC_GANGLIA123707585123707674123707614123707614Missense_MutationGTp.Q107K
SNU1040_LARGE_INTESTINE123707585123707674123707663123707663Missense_MutationTAp.L90F
OE33_OESOPHAGUS123712010123712163123712096123712096Missense_MutationGCp.Q58E
OE33_OESOPHAGUS123712010123712119123712096123712096Missense_MutationGCp.Q58E
OE33_OESOPHAGUS123712093123712163123712096123712096Missense_MutationGCp.Q58E
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE123712010123712163123712131123712131Missense_MutationGTp.S46Y
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE123712093123712163123712131123712131Missense_MutationGTp.S46Y
CW2_LARGE_INTESTINE123649849123650024123649884123649884Nonsense_MutationCTp.W911*
KYSE140_OESOPHAGUS123686711123686866123686817123686817Nonsense_MutationGAp.R611*
CAL12T_LUNG123646662123646765123646663123646663Splice_SiteTAp.E1044D
CAL12T_LUNG123646662123646739123646663123646663Splice_SiteTAp.E1044D
HT115_LARGE_INTESTINE123647561123647681123647562123647562Splice_SiteGAp.R1010*
HCC2998_LARGE_INTESTINE123647561123647681123647562123647562Splice_SiteGAp.R1010*
SNU324_PANCREAS123686711123686866123686711123686711Splice_SiteCAp.R646I

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Splicing Quantitative Trait Loci (sQTL) in the exon skipping event for MPHOSPH9

check button sQTL information located at the skipped exons.
Exon skip IDChromosomeThree exonsSkippped exonENSTCancer typeSNP idLocationDNA change (ref/var)P-value
exon_skip_9821712123707584:123707674:123710834:123710898:123712009:123712119123710834:123710898ENST00000545556.2HNSCrs1626703chr12:123710835A/C2.64e-03
exon_skip_9821712123707584:123707674:123710834:123710898:123712009:123712119123710834:123710898ENST00000545556.2HNSCrs1626703chr12:123710835A/C2.64e-03
exon_skip_9821712123707584:123707674:123710834:123710898:123712009:123712119123710834:123710898ENST00000545556.2LAMLrs1626703chr12:123710835A/C1.56e-11

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Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for MPHOSPH9


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Survival analysis of Splicing Quantitative Trait Methylation (sQTM) in the skipped exon for MPHOSPH9


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RelatedDrugs for MPHOSPH9

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for MPHOSPH9

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource