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Benchmarking Results for Dataset: 40 |
UMAP visualization |
| velocyto | scVelo_stochastic | scVelo_dynamical | veloVI |
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| cellDancer | UniTVelo | TFvelo | NeuroVelo |
 |  |  |  | DeepCycle | VeloCycle | DeepVelo | cell2fate |
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| Region Velocity | VeloVAE | scKINETICS | scRNAkinetics |
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| Pyro-Velocity | LatentVelo | PhyloVelo | SDEvelo |
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| STT | VeloAE | k-velo | TopicVelo |
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Top |
Velocity visualization using stream |
| velocyto | scVelo_stochastic | scVelo_dynamical | veloVI |
 |  |  |  |
| cellDancer | UniTVelo | TFvelo | NeuroVelo |
 |  |  |  | DeepCycle | VeloCycle | DeepVelo | cell2fate |
 |  |  |  |
| Region Velocity | VeloVAE | scKINETICS | scRNAkinetics |
 |  |  |  |
| Pyro-Velocity | LatentVelo | PhyloVelo | SDEvelo |
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| STT | VeloAE | k-velo | TopicVelo |
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Top |
Velocity visualization using grid |
| velocyto | scVelo_stochastic | scVelo_dynamical | veloVI |
 |  |  |  |
| cellDancer | UniTVelo | TFvelo | NeuroVelo |
 |  |  |  | DeepCycle | VeloCycle | DeepVelo | cell2fate |
 |  |  |  |
| Region Velocity | VeloVAE | scKINETICS | scRNAkinetics |
 |  |  |  |
| Pyro-Velocity | LatentVelo | PhyloVelo | SDEvelo |
 |  |  |  |
| STT | VeloAE | k-velo | TopicVelo |
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Top |
Pseudotime analysis |
| velocyto | scVelo_stochastic | scVelo_dynamical | veloVI |
 |  |  |  |
| cellDancer | UniTVelo | TFvelo | NeuroVelo |
 |  |  |  | DeepCycle | VeloCycle | DeepVelo | cell2fate |
 |  |  |  |
| Region Velocity | VeloVAE | scKINETICS | scRNAkinetics |
 |  |  |  |
| Pyro-Velocity | LatentVelo | PhyloVelo | SDEvelo |
 |  |  |  |
| STT | VeloAE | k-velo | TopicVelo |
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Top |
Ridgeline |
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Confidence |
| velocyto | scVelo_stochastic | scVelo_dynamical | veloVI |
 |  |  |  |
| cellDancer | UniTVelo | TFvelo | NeuroVelo |
 |  |  |  | DeepCycle | VeloCycle | DeepVelo | cell2fate |
 |  |  |  |
| Region Velocity | VeloVAE | scKINETICS | scRNAkinetics |
 |  |  |  |
| Pyro-Velocity | LatentVelo | PhyloVelo | SDEvelo |
 |  |  |  |
| STT | VeloAE | k-velo | TopicVelo |
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Top |
RoseDiagram |
| Velocyto |  |
| scVelo_stochastic |  |
| scVelo_dynamical |  |
| veloVI |  |
| cellDancer |  |
| UniTVelo |  |
| TFvelo |  |
| NeuroVelo |  |
| DeepCycle |  |
| VeloCycle |  |
| DeepVelo |  |
| cell2fate |  |
| Region Velocity |  |
| VeloVAE |  |
| scKINETICS |  |
| scRNAkinetics |  |
| Pyro-Velocity |  |
| LatentVelo |  |
| PhyloVelo |  |
| SDEvelo |  |
| STT |  |
| VeloAE |  |
| k-velo |  |
| TopicVelo |  |
Top |
Clustering metrics |
| Inter Class Distance |  |
| Intra Class Distance |  |
| Inter/Intra Ratio |  |
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Cross-boundary Direction Correctness (CBDir) |
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In-cluster coherence (ICCoh) |
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