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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for HS3ST2 |
 Gene summary |
| Gene information | Gene symbol | HS3ST2 | Gene ID | 9956 |
| Gene name | heparan sulfate-glucosamine 3-sulfotransferase 2 | |
| Synonyms | 30ST2|3OST2 | |
| Cytomap | 16p12.2 | |
| Type of gene | protein-coding | |
| Description | heparan sulfate glucosamine 3-O-sulfotransferase 23-OST-2h3-OST-2heparan sulfate (glucosamine) 3-O-sulfotransferase 2heparan sulfate 3-O-sulfotransferase 2heparan sulfate D-glucosaminyl 3-O-sulfotransferase 2heparin-glucosamine 3-O-sulfotransferase | |
| Modification date | 20200313 | |
| UniProtAcc | Q9Y278, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
Top |
RNA A-to-I events for HS3ST2 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA editing frequencies across three data sets. |
 |
| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA A-to-I editing events in AD. |
| ADediting_524068(22822240, +), ADediting_524069(22822265, +), ADediting_524070(22822278, +), ADediting_524071(22822283, +), ADediting_524072(22822295, +), ADediting_524073(22822299, +), ADediting_524074(22822305, +), ADediting_524075(22822307, +), ADediting_524076(22822402, +), ADediting_524077(22822598, +), ADediting_524078(22822599, +), ADediting_524079(22822634, +), ADediting_524080(22822644, +), ADediting_524081(22822708, +), ADediting_524082(22822734, +), ADediting_524083(22822740, +), ADediting_524084(22822744, +), ADediting_524085(22822761, +), ADediting_524086(22822766, +), ADediting_524087(22822776, +), ADediting_524088(22823574, +), ADediting_524089(22823640, +), ADediting_524090(22823644, +), ADediting_524091(22823648, +), ADediting_524092(22823656, +), ADediting_524093(22823666, +), ADediting_524094(22823672, +), ADediting_524095(22823673, +), ADediting_524096(22823712, +), ADediting_524097(22823729, +), ADediting_524098(22823738, +), ADediting_524099(22823744, +), ADediting_524100(22825625, +), ADediting_524101(22825867, +), ADediting_524102(22825876, +), ADediting_524103(22825929, +), ADediting_524104(22825944, +), ADediting_524105(22826013, +), ADediting_524106(22826319, +), ADediting_524107(22827812, +), ADediting_524108(22827815, +), ADediting_524109(22827884, +), ADediting_524110(22827893, +), ADediting_524111(22827899, +), ADediting_524112(22827919, +), ADediting_524113(22827942, +), ADediting_524114(22827968, +), ADediting_524115(22827975, +), ADediting_524116(22829065, +), ADediting_524117(22829073, +), ADediting_524118(22829194, +), ADediting_524119(22829200, +), ADediting_524120(22830165, +), ADediting_524121(22830179, +), ADediting_524122(22830297, +), ADediting_524123(22832265, +), ADediting_524124(22840406, +), ADediting_524125(22840447, +), ADediting_524126(22840483, +), ADediting_524127(22840567, +), ADediting_524128(22840573, +), ADediting_524129(22845061, +), ADediting_524130(22845416, +), ADediting_524131(22845452, +), ADediting_524132(22845456, +), ADediting_524133(22845562, +), ADediting_524134(22845582, +), ADediting_524135(22845625, +), ADediting_524136(22846022, +), ADediting_524137(22846023, +), ADediting_524138(22846029, +), ADediting_524139(22846044, +), ADediting_524140(22846045, +), ADediting_524141(22846068, +), ADediting_524142(22846076, +), ADediting_524143(22846156, +), ADediting_524144(22854708, +), ADediting_524145(22854751, +), ADediting_524146(22854765, +), ADediting_524147(22854778, +), ADediting_524148(22854780, +), ADediting_524149(22858980, +), ADediting_524150(22859045, +), ADediting_524151(22859051, +), ADediting_524152(22859085, +), ADediting_524153(22860904, +), ADediting_524154(22860959, +), ADediting_524155(22860977, +), ADediting_524156(22861077, +), ADediting_524157(22861115, +), ADediting_524158(22861151, +), ADediting_524159(22861157, +), ADediting_524160(22864808, +), ADediting_524161(22864930, +), ADediting_524162(22864936, +), ADediting_524163(22865037, +), ADediting_524164(22866501, +), ADediting_524165(22866663, +), ADediting_524166(22866686, +), ADediting_524167(22866754, +), ADediting_524168(22868191, +), ADediting_524169(22868197, +), ADediting_524170(22868258, +), ADediting_524171(22868288, +), ADediting_524172(22871111, +), ADediting_524173(22871169, +), ADediting_524174(22871170, +), ADediting_524175(22871195, +), ADediting_524176(22871235, +), ADediting_524177(22871306, +), ADediting_524178(22875506, +), ADediting_524179(22875520, +), ADediting_524180(22875522, +), ADediting_524181(22875538, +), ADediting_524182(22875542, +), ADediting_524183(22875566, +), ADediting_524184(22875588, +), ADediting_524185(22875617, +), ADediting_524186(22884910, +), ADediting_524187(22884941, +), ADediting_524188(22884970, +), ADediting_524189(22884974, +), ADediting_524190(22884982, +), ADediting_524191(22886935, +), ADediting_524192(22886966, +), ADediting_524193(22886972, +), ADediting_524194(22886973, +), ADediting_524195(22887737, +), ADediting_524196(22887766, +), ADediting_524197(22887838, +), ADediting_524198(22887850, +), ADediting_524199(22887868, +), ADediting_524200(22892025, +), ADediting_524201(22893916, +), ADediting_524202(22894057, +), ADediting_524203(22894634, +), ADediting_524204(22894652, +), ADediting_524205(22894665, +), ADediting_524206(22894666, +), ADediting_524207(22894679, +), ADediting_524208(22894697, +), ADediting_524213(22903608, +), ADediting_524214(22903641, +), ADediting_524215(22903648, +), ADediting_524216(22903657, +), ADediting_524217(22903662, +), ADediting_524218(22903663, +), ADediting_524219(22904264, +), ADediting_524220(22904296, +), ADediting_524221(22904299, +), ADediting_524222(22904303, +), ADediting_524223(22904306, +), ADediting_524224(22904315, +), ADediting_524225(22904336, +), ADediting_524226(22904337, +), ADediting_524227(22904352, +), ADediting_524228(22904366, +), ADediting_524236(22912042, +), ADediting_524237(22914584, +), ADediting_524238(22914672, +), ADediting_1624055(22822787, +), ADediting_1624056(22825768, +), ADediting_1624057(22827788, +), ADediting_1624058(22827805, +), ADediting_1624059(22854850, +), ADediting_1624060(22858984, +), ADediting_1624061(22871129, +), ADediting_1624062(22882308, +), ADediting_1624063(22894056, +), ADediting_1624064(22896076, +), ADediting_1624065(22903645, +), ADediting_1624066(22904330, +), ADediting_1624067(22904358, +), |
Top |
RNA editing positional annotations for HS3ST2 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_524068 | chr16_22822240_+ | intronic |
| ADediting_524069 | chr16_22822265_+ | intronic |
| ADediting_524070 | chr16_22822278_+ | intronic |
| ADediting_524071 | chr16_22822283_+ | intronic |
| ADediting_524072 | chr16_22822295_+ | intronic |
| ADediting_524073 | chr16_22822299_+ | intronic |
| ADediting_524074 | chr16_22822305_+ | intronic |
| ADediting_524075 | chr16_22822307_+ | intronic |
| ADediting_524076 | chr16_22822402_+ | intronic |
| ADediting_524077 | chr16_22822598_+ | intronic |
| ADediting_524078 | chr16_22822599_+ | intronic |
| ADediting_524079 | chr16_22822634_+ | intronic |
| ADediting_524080 | chr16_22822644_+ | intronic |
| ADediting_524081 | chr16_22822708_+ | intronic |
| ADediting_524082 | chr16_22822734_+ | intronic |
| ADediting_524083 | chr16_22822740_+ | intronic |
| ADediting_524084 | chr16_22822744_+ | intronic |
| ADediting_524085 | chr16_22822761_+ | intronic |
| ADediting_524086 | chr16_22822766_+ | intronic |
| ADediting_524087 | chr16_22822776_+ | intronic |
| ADediting_524088 | chr16_22823574_+ | intronic |
| ADediting_524089 | chr16_22823640_+ | intronic |
| ADediting_524090 | chr16_22823644_+ | intronic |
| ADediting_524091 | chr16_22823648_+ | intronic |
| ADediting_524092 | chr16_22823656_+ | intronic |
| ADediting_524093 | chr16_22823666_+ | intronic |
| ADediting_524094 | chr16_22823672_+ | intronic |
| ADediting_524095 | chr16_22823673_+ | intronic |
| ADediting_524096 | chr16_22823712_+ | intronic |
| ADediting_524097 | chr16_22823729_+ | intronic |
| ADediting_524098 | chr16_22823738_+ | intronic |
| ADediting_524099 | chr16_22823744_+ | intronic |
| ADediting_524100 | chr16_22825625_+ | intronic |
| ADediting_524101 | chr16_22825867_+ | intronic |
| ADediting_524102 | chr16_22825876_+ | intronic |
| ADediting_524103 | chr16_22825929_+ | intronic |
| ADediting_524104 | chr16_22825944_+ | intronic |
| ADediting_524105 | chr16_22826013_+ | intronic |
| ADediting_524106 | chr16_22826319_+ | intronic |
| ADediting_524107 | chr16_22827812_+ | intronic |
| ADediting_524108 | chr16_22827815_+ | intronic |
| ADediting_524109 | chr16_22827884_+ | intronic |
| ADediting_524110 | chr16_22827893_+ | intronic |
| ADediting_524111 | chr16_22827899_+ | intronic |
| ADediting_524112 | chr16_22827919_+ | intronic |
| ADediting_524113 | chr16_22827942_+ | intronic |
| ADediting_524114 | chr16_22827968_+ | intronic |
| ADediting_524115 | chr16_22827975_+ | intronic |
| ADediting_524116 | chr16_22829065_+ | intronic |
| ADediting_524117 | chr16_22829073_+ | intronic |
| ADediting_524118 | chr16_22829194_+ | intronic |
| ADediting_524119 | chr16_22829200_+ | intronic |
| ADediting_524120 | chr16_22830165_+ | intronic |
| ADediting_524121 | chr16_22830179_+ | intronic |
| ADediting_524122 | chr16_22830297_+ | intronic |
| ADediting_524123 | chr16_22832265_+ | intronic |
| ADediting_524124 | chr16_22840406_+ | intronic |
| ADediting_524125 | chr16_22840447_+ | intronic |
| ADediting_524126 | chr16_22840483_+ | intronic |
| ADediting_524127 | chr16_22840567_+ | intronic |
| ADediting_524128 | chr16_22840573_+ | intronic |
| ADediting_524129 | chr16_22845061_+ | intronic |
| ADediting_524130 | chr16_22845416_+ | intronic |
| ADediting_524131 | chr16_22845452_+ | intronic |
| ADediting_524132 | chr16_22845456_+ | intronic |
| ADediting_524133 | chr16_22845562_+ | intronic |
| ADediting_524134 | chr16_22845582_+ | intronic |
| ADediting_524135 | chr16_22845625_+ | intronic |
| ADediting_524136 | chr16_22846022_+ | intronic |
| ADediting_524137 | chr16_22846023_+ | intronic |
| ADediting_524138 | chr16_22846029_+ | intronic |
| ADediting_524139 | chr16_22846044_+ | intronic |
| ADediting_524140 | chr16_22846045_+ | intronic |
| ADediting_524141 | chr16_22846068_+ | intronic |
| ADediting_524142 | chr16_22846076_+ | intronic |
| ADediting_524143 | chr16_22846156_+ | intronic |
| ADediting_524144 | chr16_22854708_+ | UTR3 |
| ADediting_524145 | chr16_22854751_+ | UTR3 |
| ADediting_524146 | chr16_22854765_+ | UTR3 |
| ADediting_524147 | chr16_22854778_+ | UTR3 |
| ADediting_524148 | chr16_22854780_+ | UTR3 |
| ADediting_524149 | chr16_22858980_+ | intronic |
| ADediting_524150 | chr16_22859045_+ | intronic |
| ADediting_524151 | chr16_22859051_+ | intronic |
| ADediting_524152 | chr16_22859085_+ | intronic |
| ADediting_524153 | chr16_22860904_+ | intronic |
| ADediting_524154 | chr16_22860959_+ | intronic |
| ADediting_524155 | chr16_22860977_+ | intronic |
| ADediting_524156 | chr16_22861077_+ | intronic |
| ADediting_524157 | chr16_22861115_+ | intronic |
| ADediting_524158 | chr16_22861151_+ | intronic |
| ADediting_524159 | chr16_22861157_+ | intronic |
| ADediting_524160 | chr16_22864808_+ | intronic |
| ADediting_524161 | chr16_22864930_+ | intronic |
| ADediting_524162 | chr16_22864936_+ | intronic |
| ADediting_524163 | chr16_22865037_+ | intronic |
| ADediting_524164 | chr16_22866501_+ | intronic |
| ADediting_524165 | chr16_22866663_+ | intronic |
| ADediting_524166 | chr16_22866686_+ | intronic |
| ADediting_524167 | chr16_22866754_+ | intronic |
| ADediting_524168 | chr16_22868191_+ | intronic |
| ADediting_524169 | chr16_22868197_+ | intronic |
| ADediting_524170 | chr16_22868258_+ | intronic |
| ADediting_524171 | chr16_22868288_+ | intronic |
| ADediting_524172 | chr16_22871111_+ | intronic |
| ADediting_524173 | chr16_22871169_+ | intronic |
| ADediting_524174 | chr16_22871170_+ | intronic |
| ADediting_524175 | chr16_22871195_+ | intronic |
| ADediting_524176 | chr16_22871235_+ | intronic |
| ADediting_524177 | chr16_22871306_+ | intronic |
| ADediting_524178 | chr16_22875506_+ | intronic |
| ADediting_524179 | chr16_22875520_+ | intronic |
| ADediting_524180 | chr16_22875522_+ | intronic |
| ADediting_524181 | chr16_22875538_+ | intronic |
| ADediting_524182 | chr16_22875542_+ | intronic |
| ADediting_524183 | chr16_22875566_+ | intronic |
| ADediting_524184 | chr16_22875588_+ | intronic |
| ADediting_524185 | chr16_22875617_+ | intronic |
| ADediting_524186 | chr16_22884910_+ | intronic |
| ADediting_524187 | chr16_22884941_+ | intronic |
| ADediting_524188 | chr16_22884970_+ | intronic |
| ADediting_524189 | chr16_22884974_+ | intronic |
| ADediting_524190 | chr16_22884982_+ | intronic |
| ADediting_524191 | chr16_22886935_+ | intronic |
| ADediting_524192 | chr16_22886966_+ | intronic |
| ADediting_524193 | chr16_22886972_+ | intronic |
| ADediting_524194 | chr16_22886973_+ | intronic |
| ADediting_524195 | chr16_22887737_+ | intronic |
| ADediting_524196 | chr16_22887766_+ | intronic |
| ADediting_524197 | chr16_22887838_+ | intronic |
| ADediting_524198 | chr16_22887850_+ | intronic |
| ADediting_524199 | chr16_22887868_+ | intronic |
| ADediting_524200 | chr16_22892025_+ | intronic |
| ADediting_524201 | chr16_22893916_+ | intronic |
| ADediting_524202 | chr16_22894057_+ | intronic |
| ADediting_524203 | chr16_22894634_+ | intronic |
| ADediting_524204 | chr16_22894652_+ | intronic |
| ADediting_524205 | chr16_22894665_+ | intronic |
| ADediting_524206 | chr16_22894666_+ | intronic |
| ADediting_524207 | chr16_22894679_+ | intronic |
| ADediting_524208 | chr16_22894697_+ | intronic |
| ADediting_524213 | chr16_22903608_+ | intronic |
| ADediting_524214 | chr16_22903641_+ | intronic |
| ADediting_524215 | chr16_22903648_+ | intronic |
| ADediting_524216 | chr16_22903657_+ | intronic |
| ADediting_524217 | chr16_22903662_+ | intronic |
| ADediting_524218 | chr16_22903663_+ | intronic |
| ADediting_524219 | chr16_22904264_+ | intronic |
| ADediting_524220 | chr16_22904296_+ | intronic |
| ADediting_524221 | chr16_22904299_+ | intronic |
| ADediting_524222 | chr16_22904303_+ | intronic |
| ADediting_524223 | chr16_22904306_+ | intronic |
| ADediting_524224 | chr16_22904315_+ | intronic |
| ADediting_524225 | chr16_22904336_+ | intronic |
| ADediting_524226 | chr16_22904337_+ | intronic |
| ADediting_524227 | chr16_22904352_+ | intronic |
| ADediting_524228 | chr16_22904366_+ | intronic |
| ADediting_524236 | chr16_22912042_+ | intronic |
| ADediting_524237 | chr16_22914584_+ | intronic |
| ADediting_524238 | chr16_22914672_+ | intronic |
| ADediting_1624055 | chr16_22822787_+ | intronic |
| ADediting_1624056 | chr16_22825768_+ | intronic |
| ADediting_1624057 | chr16_22827788_+ | intronic |
| ADediting_1624058 | chr16_22827805_+ | intronic |
| ADediting_1624059 | chr16_22854850_+ | intronic |
| ADediting_1624060 | chr16_22858984_+ | intronic |
| ADediting_1624061 | chr16_22871129_+ | intronic |
| ADediting_1624062 | chr16_22882308_+ | intronic |
| ADediting_1624063 | chr16_22894056_+ | intronic |
| ADediting_1624064 | chr16_22896076_+ | intronic |
| ADediting_1624065 | chr16_22903645_+ | intronic |
| ADediting_1624066 | chr16_22904330_+ | intronic |
| ADediting_1624067 | chr16_22904358_+ | intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_524068 | chr16_22822240_+ | SINE | Alu | Name=AluJr |
| ADediting_524069 | chr16_22822265_+ | SINE | Alu | Name=AluJr |
| ADediting_524070 | chr16_22822278_+ | SINE | Alu | Name=AluJr |
| ADediting_524071 | chr16_22822283_+ | SINE | Alu | Name=AluJr |
| ADediting_524072 | chr16_22822295_+ | SINE | Alu | Name=AluJr |
| ADediting_524073 | chr16_22822299_+ | SINE | Alu | Name=AluJr |
| ADediting_524074 | chr16_22822305_+ | SINE | Alu | Name=AluJr |
| ADediting_524075 | chr16_22822307_+ | SINE | Alu | Name=AluJr |
| ADediting_524076 | chr16_22822402_+ | SINE | Alu | Name=AluJr |
| ADediting_524077 | chr16_22822598_+ | SINE | Alu | Name=AluSx |
| ADediting_524078 | chr16_22822599_+ | SINE | Alu | Name=AluSx |
| ADediting_524079 | chr16_22822634_+ | SINE | Alu | Name=AluSx |
| ADediting_524080 | chr16_22822644_+ | SINE | Alu | Name=AluSx |
| ADediting_524081 | chr16_22822708_+ | SINE | Alu | Name=AluSx |
| ADediting_524082 | chr16_22822734_+ | SINE | Alu | Name=AluSx |
| ADediting_524083 | chr16_22822740_+ | SINE | Alu | Name=AluSx |
| ADediting_524084 | chr16_22822744_+ | SINE | Alu | Name=AluSx |
| ADediting_524085 | chr16_22822761_+ | SINE | Alu | Name=AluSx |
| ADediting_524086 | chr16_22822766_+ | SINE | Alu | Name=AluSx |
| ADediting_524087 | chr16_22822776_+ | SINE | Alu | Name=AluSx |
| ADediting_524088 | chr16_22823574_+ | SINE | Alu | Name=AluJo |
| ADediting_524089 | chr16_22823640_+ | SINE | Alu | Name=AluJo |
| ADediting_524090 | chr16_22823644_+ | SINE | Alu | Name=AluJo |
| ADediting_524091 | chr16_22823648_+ | SINE | Alu | Name=AluJo |
| ADediting_524092 | chr16_22823656_+ | SINE | Alu | Name=AluJo |
| ADediting_524093 | chr16_22823666_+ | SINE | Alu | Name=AluJo |
| ADediting_524094 | chr16_22823672_+ | SINE | Alu | Name=AluJo |
| ADediting_524095 | chr16_22823673_+ | SINE | Alu | Name=AluJo |
| ADediting_524096 | chr16_22823712_+ | SINE | Alu | Name=AluJo |
| ADediting_524097 | chr16_22823729_+ | SINE | Alu | Name=AluJo |
| ADediting_524098 | chr16_22823738_+ | SINE | Alu | Name=AluJo |
| ADediting_524099 | chr16_22823744_+ | SINE | Alu | Name=AluJo |
| ADediting_524101 | chr16_22825867_+ | SINE | Alu | Name=AluSq |
| ADediting_524102 | chr16_22825876_+ | SINE | Alu | Name=AluSq |
| ADediting_524103 | chr16_22825929_+ | SINE | Alu | Name=AluSq |
| ADediting_524104 | chr16_22825944_+ | SINE | Alu | Name=AluSq |
| ADediting_524105 | chr16_22826013_+ | SINE | Alu | Name=AluSq |
| ADediting_524106 | chr16_22826319_+ | LINE | L2 | Name=L2a |
| ADediting_524107 | chr16_22827812_+ | SINE | Alu | Name=AluJb |
| ADediting_524108 | chr16_22827815_+ | SINE | Alu | Name=AluJb |
| ADediting_524109 | chr16_22827884_+ | SINE | Alu | Name=AluJb |
| ADediting_524110 | chr16_22827893_+ | SINE | Alu | Name=AluJb |
| ADediting_524111 | chr16_22827899_+ | SINE | Alu | Name=AluJb |
| ADediting_524112 | chr16_22827919_+ | SINE | Alu | Name=AluJb |
| ADediting_524113 | chr16_22827942_+ | SINE | Alu | Name=AluJb |
| ADediting_524114 | chr16_22827968_+ | SINE | Alu | Name=AluJb |
| ADediting_524115 | chr16_22827975_+ | SINE | Alu | Name=AluJb |
| ADediting_524123 | chr16_22832265_+ | SINE | Alu | Name=AluJo |
| ADediting_524124 | chr16_22840406_+ | SINE | Alu | Name=AluSx3 |
| ADediting_524125 | chr16_22840447_+ | SINE | Alu | Name=AluSx3 |
| ADediting_524126 | chr16_22840483_+ | SINE | Alu | Name=AluSx3 |
| ADediting_524127 | chr16_22840567_+ | SINE | Alu | Name=AluSx3 |
| ADediting_524128 | chr16_22840573_+ | SINE | Alu | Name=AluSx3 |
| ADediting_524129 | chr16_22845061_+ | SINE | Alu | Name=AluY |
| ADediting_524130 | chr16_22845416_+ | SINE | Alu | Name=AluSx3 |
| ADediting_524131 | chr16_22845452_+ | SINE | Alu | Name=AluSx3 |
| ADediting_524132 | chr16_22845456_+ | SINE | Alu | Name=AluSx3 |
| ADediting_524133 | chr16_22845562_+ | SINE | Alu | Name=AluSx3 |
| ADediting_524134 | chr16_22845582_+ | SINE | Alu | Name=AluSx3 |
| ADediting_524135 | chr16_22845625_+ | SINE | Alu | Name=AluSx3 |
| ADediting_524136 | chr16_22846022_+ | SINE | Alu | Name=AluSx1 |
| ADediting_524137 | chr16_22846023_+ | SINE | Alu | Name=AluSx1 |
| ADediting_524138 | chr16_22846029_+ | SINE | Alu | Name=AluSx1 |
| ADediting_524139 | chr16_22846044_+ | SINE | Alu | Name=AluSx1 |
| ADediting_524140 | chr16_22846045_+ | SINE | Alu | Name=AluSx1 |
| ADediting_524141 | chr16_22846068_+ | SINE | Alu | Name=AluSx1 |
| ADediting_524142 | chr16_22846076_+ | SINE | Alu | Name=AluSx1 |
| ADediting_524143 | chr16_22846156_+ | SINE | Alu | Name=AluSx1 |
| ADediting_524144 | chr16_22854708_+ | SINE | Alu | Name=AluJr |
| ADediting_524145 | chr16_22854751_+ | SINE | Alu | Name=AluJr |
| ADediting_524146 | chr16_22854765_+ | SINE | Alu | Name=AluJr |
| ADediting_524147 | chr16_22854778_+ | SINE | Alu | Name=AluJr |
| ADediting_524148 | chr16_22854780_+ | SINE | Alu | Name=AluJr |
| ADediting_524149 | chr16_22858980_+ | SINE | Alu | Name=AluJr |
| ADediting_524150 | chr16_22859045_+ | SINE | Alu | Name=AluJr |
| ADediting_524151 | chr16_22859051_+ | SINE | Alu | Name=AluJr |
| ADediting_524152 | chr16_22859085_+ | SINE | Alu | Name=AluJr |
| ADediting_524153 | chr16_22860904_+ | SINE | Alu | Name=AluJo |
| ADediting_524154 | chr16_22860959_+ | SINE | Alu | Name=AluJo |
| ADediting_524155 | chr16_22860977_+ | SINE | Alu | Name=AluJo |
| ADediting_524156 | chr16_22861077_+ | SINE | Alu | Name=AluJo |
| ADediting_524157 | chr16_22861115_+ | SINE | Alu | Name=AluJo |
| ADediting_524158 | chr16_22861151_+ | SINE | Alu | Name=AluJo |
| ADediting_524159 | chr16_22861157_+ | SINE | Alu | Name=AluJo |
| ADediting_524160 | chr16_22864808_+ | SINE | Alu | Name=AluJo |
| ADediting_524161 | chr16_22864930_+ | SINE | Alu | Name=AluJo |
| ADediting_524162 | chr16_22864936_+ | SINE | Alu | Name=AluJo |
| ADediting_524163 | chr16_22865037_+ | SINE | Alu | Name=AluJo |
| ADediting_524164 | chr16_22866501_+ | SINE | Alu | Name=AluJb |
| ADediting_524165 | chr16_22866663_+ | SINE | Alu | Name=AluJb |
| ADediting_524166 | chr16_22866686_+ | SINE | Alu | Name=AluJb |
| ADediting_524167 | chr16_22866754_+ | SINE | Alu | Name=AluJb |
| ADediting_524168 | chr16_22868191_+ | SINE | Alu | Name=AluSc |
| ADediting_524169 | chr16_22868197_+ | SINE | Alu | Name=AluSc |
| ADediting_524170 | chr16_22868258_+ | SINE | Alu | Name=AluSc |
| ADediting_524171 | chr16_22868288_+ | SINE | Alu | Name=AluSc |
| ADediting_524172 | chr16_22871111_+ | SINE | Alu | Name=AluSc |
| ADediting_524173 | chr16_22871169_+ | SINE | Alu | Name=AluSc |
| ADediting_524174 | chr16_22871170_+ | SINE | Alu | Name=AluSc |
| ADediting_524175 | chr16_22871195_+ | SINE | Alu | Name=AluSc |
| ADediting_524176 | chr16_22871235_+ | SINE | Alu | Name=AluSc |
| ADediting_524177 | chr16_22871306_+ | SINE | Alu | Name=AluSc |
| ADediting_524178 | chr16_22875506_+ | SINE | Alu | Name=AluSc8 |
| ADediting_524179 | chr16_22875520_+ | SINE | Alu | Name=AluSc8 |
| ADediting_524180 | chr16_22875522_+ | SINE | Alu | Name=AluSc8 |
| ADediting_524181 | chr16_22875538_+ | SINE | Alu | Name=AluSc8 |
| ADediting_524182 | chr16_22875542_+ | SINE | Alu | Name=AluSc8 |
| ADediting_524183 | chr16_22875566_+ | SINE | Alu | Name=AluSc8 |
| ADediting_524184 | chr16_22875588_+ | SINE | Alu | Name=AluSc8 |
| ADediting_524185 | chr16_22875617_+ | SINE | Alu | Name=AluSc8 |
| ADediting_524186 | chr16_22884910_+ | SINE | Alu | Name=AluSz6 |
| ADediting_524187 | chr16_22884941_+ | SINE | Alu | Name=AluSz6 |
| ADediting_524188 | chr16_22884970_+ | SINE | Alu | Name=AluSz6 |
| ADediting_524189 | chr16_22884974_+ | SINE | Alu | Name=AluSz6 |
| ADediting_524190 | chr16_22884982_+ | SINE | Alu | Name=AluSz6 |
| ADediting_524191 | chr16_22886935_+ | SINE | Alu | Name=AluJr |
| ADediting_524192 | chr16_22886966_+ | SINE | Alu | Name=AluJr |
| ADediting_524193 | chr16_22886972_+ | SINE | Alu | Name=AluJr |
| ADediting_524194 | chr16_22886973_+ | SINE | Alu | Name=AluJr |
| ADediting_524195 | chr16_22887737_+ | SINE | Alu | Name=AluJr |
| ADediting_524196 | chr16_22887766_+ | SINE | Alu | Name=AluJr |
| ADediting_524197 | chr16_22887838_+ | SINE | Alu | Name=AluJr |
| ADediting_524198 | chr16_22887850_+ | SINE | Alu | Name=AluJr |
| ADediting_524199 | chr16_22887868_+ | SINE | Alu | Name=AluJr |
| ADediting_524200 | chr16_22892025_+ | SINE | Alu | Name=AluY |
| ADediting_524201 | chr16_22893916_+ | SINE | Alu | Name=AluJb |
| ADediting_524202 | chr16_22894057_+ | SINE | Alu | Name=AluJb |
| ADediting_524203 | chr16_22894634_+ | SINE | Alu | Name=AluJb |
| ADediting_524204 | chr16_22894652_+ | SINE | Alu | Name=AluJb |
| ADediting_524205 | chr16_22894665_+ | SINE | Alu | Name=AluJb |
| ADediting_524206 | chr16_22894666_+ | SINE | Alu | Name=AluJb |
| ADediting_524207 | chr16_22894679_+ | SINE | Alu | Name=AluJb |
| ADediting_524208 | chr16_22894697_+ | SINE | Alu | Name=AluJb |
| ADediting_524213 | chr16_22903608_+ | LINE | L2 | Name=L2b |
| ADediting_524214 | chr16_22903641_+ | LINE | L2 | Name=L2b |
| ADediting_524215 | chr16_22903648_+ | LINE | L2 | Name=L2b |
| ADediting_524216 | chr16_22903657_+ | LINE | L2 | Name=L2b |
| ADediting_524217 | chr16_22903662_+ | LINE | L2 | Name=L2b |
| ADediting_524218 | chr16_22903663_+ | LINE | L2 | Name=L2b |
| ADediting_524219 | chr16_22904264_+ | LINE | L2 | Name=L2c |
| ADediting_524220 | chr16_22904296_+ | LINE | L2 | Name=L2c |
| ADediting_524221 | chr16_22904299_+ | LINE | L2 | Name=L2c |
| ADediting_524222 | chr16_22904303_+ | LINE | L2 | Name=L2c |
| ADediting_524223 | chr16_22904306_+ | LINE | L2 | Name=L2c |
| ADediting_524224 | chr16_22904315_+ | LINE | L2 | Name=L2c |
| ADediting_524225 | chr16_22904336_+ | LINE | L2 | Name=L2c |
| ADediting_524226 | chr16_22904337_+ | LINE | L2 | Name=L2c |
| ADediting_524236 | chr16_22912042_+ | SINE | Alu | Name=AluJb |
| ADediting_524237 | chr16_22914584_+ | SINE | Alu | Name=AluJo |
| ADediting_524238 | chr16_22914672_+ | SINE | Alu | Name=AluJo |
| ADediting_1624055 | chr16_22822787_+ | SINE | Alu | Name=AluSx |
| ADediting_1624056 | chr16_22825768_+ | SINE | Alu | Name=AluSq |
| ADediting_1624057 | chr16_22827788_+ | SINE | Alu | Name=AluJb |
| ADediting_1624058 | chr16_22827805_+ | SINE | Alu | Name=AluJb |
| ADediting_1624059 | chr16_22854850_+ | SINE | Alu | Name=AluJr |
| ADediting_1624060 | chr16_22858984_+ | SINE | Alu | Name=AluJr |
| ADediting_1624061 | chr16_22871129_+ | SINE | Alu | Name=AluSc |
| ADediting_1624062 | chr16_22882308_+ | SINE | Alu | Name=AluJb |
| ADediting_1624063 | chr16_22894056_+ | SINE | Alu | Name=AluJb |
| ADediting_1624064 | chr16_22896076_+ | SINE | Alu | Name=FLAM_A |
| ADediting_1624065 | chr16_22903645_+ | LINE | L2 | Name=L2b |
| ADediting_1624066 | chr16_22904330_+ | LINE | L2 | Name=L2c |
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RNA A-to-I editing events in the alternative splicing sites for HS3ST2 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| ES | ADediting_524148 | chr16_22854780_+ | 22854779:22854787 | 5ss | 2e | CAGGTATGT | 9.80 | CGGGTATGT | 8.79 |
| ES | ADediting_524148 | chr16_22854780_+ | 22854779:22854787 | 5ss | 2e | CAGGTATGT | 9.80 | CGGGTATGT | 8.79 |
| ES | ADediting_524148 | chr16_22854780_+ | 22854779:22854787 | 5ss | 2e | CAGGTATGT | 9.80 | CGGGTATGT | 8.79 |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for HS3ST2 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
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Protein coding region RNA A-to-I editings for HS3ST2 |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for HS3ST2 |
| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1337757 | chr7_5495852_- | ENSG00000122254.7 | ENST00000261374.4 | HS3ST2-201 | hsa-miR-589-3p | chr16 | 22916006 | 22916012 | 7mer-m8 | 22915990 | 22916013 | 140 | -12.75 |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for HS3ST2 |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for HS3ST2 |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | ADediting_524168 | chr16_22868191_+ | 0.847111783710836 | -0.0109946659716064 | 0.0357653195962246 | -0.11930418271629 | 5.55277669136861e-13 | 0.394429022689651 |
| DLPFC | ADediting_524179 | chr16_22875520_+ | 0.528078328374638 | 0.0359688154842877 | 0.679659950488773 | -0.02354455187408 | 2.44067607272945e-08 | 0.31018371017552 |
| DLPFC | ADediting_524184 | chr16_22875588_+ | 0.358510424408148 | 0.0523263118391898 | 0.480359905500784 | -0.0402287049774548 | 2.34998897955104e-08 | 0.310531690362867 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 1.17293129697958e-15 | 0.43382073279155 | 7.8086463685353e-18 | 0.462470712672361 | 0.63346894367439 | -0.027188085682477 |
| PCC | 1.03729473437736e-16 | 0.553290918748476 | 5.41695197118568e-16 | 0.542248226411195 | 0.512785407712792 | -0.0476442898041836 |
| TCX | 2.86545401459584e-14 | 0.569461779945186 | 2.35319788138165e-16 | 0.60517920773954 | 0.00718212446801634 | -0.21866353215987 |
| FP | 2.53983645378121e-08 | 0.402562598799212 | 1.87887720819137e-05 | 0.314739590224095 | 0.542815396872581 | 0.0459129884164382 |
| IFG | 0.00107405146881038 | 0.614817421772553 | 0.0125055982763291 | 0.491897089910754 | 0.9494351477793 | -0.013367045107994 |
| PG | 8.32475160111769e-10 | 0.430851298395681 | 3.9115119643214e-10 | 0.438346523914821 | 0.135206534321344 | -0.109945555216515 |
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Relation with AD stages for HS3ST2 |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
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RelatedDrugs for HS3ST2 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for HS3ST2 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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