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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for SAFB2 |
 Gene summary |
| Gene information | Gene symbol | SAFB2 | Gene ID | 9667 |
| Gene name | scaffold attachment factor B2 | |
| Synonyms | - | |
| Cytomap | 19p13.3 | |
| Type of gene | protein-coding | |
| Description | scaffold attachment factor B2 | |
| Modification date | 20200313 | |
| UniProtAcc | Q14151, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
Top |
RNA A-to-I events for SAFB2 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA editing frequencies across three data sets. |
 |
| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA A-to-I editing events in AD. |
| ADediting_783285(5591533, -), ADediting_783286(5591550, -), ADediting_783287(5594726, -), ADediting_783288(5594764, -), ADediting_783289(5594790, -), ADediting_783290(5594973, -), ADediting_783291(5594987, -), ADediting_783292(5595068, -), ADediting_783293(5595815, -), ADediting_783294(5595864, -), ADediting_783295(5596006, -), ADediting_783296(5596008, -), ADediting_783297(5596019, -), ADediting_783298(5596083, -), ADediting_783299(5596093, -), ADediting_783300(5596100, -), ADediting_783301(5596114, -), ADediting_783302(5596115, -), ADediting_783303(5596119, -), ADediting_783304(5596135, -), ADediting_783305(5596139, -), ADediting_783306(5596141, -), ADediting_783307(5596151, -), ADediting_783308(5596154, -), ADediting_783309(5596163, -), ADediting_783310(5596180, -), ADediting_783311(5596216, -), ADediting_783312(5596225, -), ADediting_783313(5596227, -), ADediting_783314(5596241, -), ADediting_783315(5596389, -), ADediting_783316(5596391, -), ADediting_783317(5596397, -), ADediting_783318(5596411, -), ADediting_783319(5596447, -), ADediting_783320(5596460, -), ADediting_783321(5596469, -), ADediting_783322(5596473, -), ADediting_783323(5596489, -), ADediting_783324(5596501, -), ADediting_783325(5596509, -), ADediting_783326(5596512, -), ADediting_783327(5596518, -), ADediting_783328(5596520, -), ADediting_783329(5596521, -), ADediting_783330(5596523, -), ADediting_783331(5596526, -), ADediting_783332(5596537, -), ADediting_783333(5596538, -), ADediting_783334(5596560, -), ADediting_783335(5596562, -), ADediting_783336(5596586, -), ADediting_783337(5596615, -), ADediting_783338(5596616, -), ADediting_783339(5596622, -), ADediting_783340(5604160, -), ADediting_783341(5604292, -), ADediting_783342(5604310, -), ADediting_783343(5605233, -), ADediting_783344(5605242, -), ADediting_783345(5605308, -), ADediting_783346(5605332, -), ADediting_783347(5605378, -), ADediting_783348(5607098, -), ADediting_783349(5607103, -), ADediting_783350(5608701, -), ADediting_783351(5608793, -), ADediting_783352(5608804, -), ADediting_783353(5608805, -), ADediting_783354(5608856, -), ADediting_783355(5608865, -), ADediting_783356(5608885, -), ADediting_783357(5608891, -), ADediting_783358(5608900, -), ADediting_783359(5608913, -), ADediting_783360(5608926, -), ADediting_783361(5608936, -), ADediting_783362(5608965, -), ADediting_783363(5608966, -), ADediting_783364(5609019, -), ADediting_783365(5609361, -), ADediting_783366(5609369, -), ADediting_783367(5609371, -), ADediting_783368(5609389, -), ADediting_783370(5609424, -), ADediting_783371(5609432, -), ADediting_783372(5609442, -), ADediting_783374(5609468, -), ADediting_783375(5609472, -), ADediting_783376(5609477, -), ADediting_783377(5609483, -), ADediting_783380(5609497, -), ADediting_783381(5609498, -), ADediting_783383(5609507, -), ADediting_783385(5609913, -), ADediting_783399(5614029, -), ADediting_783400(5614046, -), ADediting_783401(5614059, -), ADediting_783402(5614091, -), ADediting_783403(5614123, -), ADediting_783404(5614124, -), ADediting_783405(5614125, -), ADediting_783406(5614126, -), ADediting_783407(5614172, -), ADediting_783408(5614190, -), ADediting_783409(5614219, -), ADediting_783410(5614225, -), ADediting_783415(5614993, -), ADediting_783416(5615056, -), ADediting_783417(5615110, -), ADediting_783418(5615190, -), ADediting_783419(5615198, -), ADediting_783421(5615233, -), ADediting_783422(5615268, -), ADediting_783423(5615269, -), ADediting_783424(5615272, -), ADediting_783425(5615349, -), ADediting_783426(5616834, -), ADediting_783427(5616922, -), ADediting_783428(5619595, -), ADediting_783429(5619681, -), ADediting_783430(5619689, -), ADediting_783431(5619723, -), ADediting_783432(5619783, -), ADediting_783433(5619788, -), ADediting_1559160(5596071, -), ADediting_1559161(5596396, -), ADediting_1559162(5596406, -), ADediting_1559163(5596466, -), ADediting_1559164(5596477, -), ADediting_1559165(5596505, -), ADediting_1559166(5596522, -), ADediting_1559167(5596589, -), ADediting_1559168(5596624, -), ADediting_1559169(5597873, -), ADediting_1559170(5604223, -), ADediting_1559171(5604322, -), ADediting_1559172(5604323, -), ADediting_1559173(5604336, -), ADediting_1559174(5604378, -), ADediting_1559175(5605318, -), ADediting_1559176(5605372, -), ADediting_1559177(5606510, -), ADediting_1559178(5608880, -), ADediting_1559179(5609471, -), ADediting_1559180(5609929, -), ADediting_1631699(5608924, -), |
Top |
RNA editing positional annotations for SAFB2 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_783285 | chr19_5591533_- | intronic |
| ADediting_783286 | chr19_5591550_- | intronic |
| ADediting_783287 | chr19_5594726_- | intronic |
| ADediting_783288 | chr19_5594764_- | intronic |
| ADediting_783289 | chr19_5594790_- | intronic |
| ADediting_783290 | chr19_5594973_- | intronic |
| ADediting_783291 | chr19_5594987_- | intronic |
| ADediting_783292 | chr19_5595068_- | intronic |
| ADediting_783293 | chr19_5595815_- | intronic |
| ADediting_783294 | chr19_5595864_- | intronic |
| ADediting_783295 | chr19_5596006_- | intronic |
| ADediting_783296 | chr19_5596008_- | intronic |
| ADediting_783297 | chr19_5596019_- | intronic |
| ADediting_783298 | chr19_5596083_- | intronic |
| ADediting_783299 | chr19_5596093_- | intronic |
| ADediting_783300 | chr19_5596100_- | intronic |
| ADediting_783301 | chr19_5596114_- | intronic |
| ADediting_783302 | chr19_5596115_- | intronic |
| ADediting_783303 | chr19_5596119_- | intronic |
| ADediting_783304 | chr19_5596135_- | intronic |
| ADediting_783305 | chr19_5596139_- | intronic |
| ADediting_783306 | chr19_5596141_- | intronic |
| ADediting_783307 | chr19_5596151_- | intronic |
| ADediting_783308 | chr19_5596154_- | intronic |
| ADediting_783309 | chr19_5596163_- | intronic |
| ADediting_783310 | chr19_5596180_- | intronic |
| ADediting_783311 | chr19_5596216_- | intronic |
| ADediting_783312 | chr19_5596225_- | intronic |
| ADediting_783313 | chr19_5596227_- | intronic |
| ADediting_783314 | chr19_5596241_- | intronic |
| ADediting_783315 | chr19_5596389_- | intronic |
| ADediting_783316 | chr19_5596391_- | intronic |
| ADediting_783317 | chr19_5596397_- | intronic |
| ADediting_783318 | chr19_5596411_- | intronic |
| ADediting_783319 | chr19_5596447_- | intronic |
| ADediting_783320 | chr19_5596460_- | intronic |
| ADediting_783321 | chr19_5596469_- | intronic |
| ADediting_783322 | chr19_5596473_- | intronic |
| ADediting_783323 | chr19_5596489_- | intronic |
| ADediting_783324 | chr19_5596501_- | intronic |
| ADediting_783325 | chr19_5596509_- | intronic |
| ADediting_783326 | chr19_5596512_- | intronic |
| ADediting_783327 | chr19_5596518_- | intronic |
| ADediting_783328 | chr19_5596520_- | intronic |
| ADediting_783329 | chr19_5596521_- | intronic |
| ADediting_783330 | chr19_5596523_- | intronic |
| ADediting_783331 | chr19_5596526_- | intronic |
| ADediting_783332 | chr19_5596537_- | intronic |
| ADediting_783333 | chr19_5596538_- | intronic |
| ADediting_783334 | chr19_5596560_- | intronic |
| ADediting_783335 | chr19_5596562_- | intronic |
| ADediting_783336 | chr19_5596586_- | intronic |
| ADediting_783337 | chr19_5596615_- | intronic |
| ADediting_783338 | chr19_5596616_- | intronic |
| ADediting_783339 | chr19_5596622_- | intronic |
| ADediting_783340 | chr19_5604160_- | intronic |
| ADediting_783341 | chr19_5604292_- | intronic |
| ADediting_783342 | chr19_5604310_- | intronic |
| ADediting_783343 | chr19_5605233_- | intronic |
| ADediting_783344 | chr19_5605242_- | intronic |
| ADediting_783345 | chr19_5605308_- | intronic |
| ADediting_783346 | chr19_5605332_- | intronic |
| ADediting_783347 | chr19_5605378_- | intronic |
| ADediting_783348 | chr19_5607098_- | intronic |
| ADediting_783349 | chr19_5607103_- | intronic |
| ADediting_783350 | chr19_5608701_- | intronic |
| ADediting_783351 | chr19_5608793_- | intronic |
| ADediting_783352 | chr19_5608804_- | intronic |
| ADediting_783353 | chr19_5608805_- | intronic |
| ADediting_783354 | chr19_5608856_- | intronic |
| ADediting_783355 | chr19_5608865_- | intronic |
| ADediting_783356 | chr19_5608885_- | intronic |
| ADediting_783357 | chr19_5608891_- | intronic |
| ADediting_783358 | chr19_5608900_- | intronic |
| ADediting_783359 | chr19_5608913_- | intronic |
| ADediting_783360 | chr19_5608926_- | intronic |
| ADediting_783361 | chr19_5608936_- | intronic |
| ADediting_783362 | chr19_5608965_- | intronic |
| ADediting_783363 | chr19_5608966_- | intronic |
| ADediting_783364 | chr19_5609019_- | intronic |
| ADediting_783365 | chr19_5609361_- | intronic |
| ADediting_783366 | chr19_5609369_- | intronic |
| ADediting_783367 | chr19_5609371_- | intronic |
| ADediting_783368 | chr19_5609389_- | intronic |
| ADediting_783370 | chr19_5609424_- | intronic |
| ADediting_783371 | chr19_5609432_- | intronic |
| ADediting_783372 | chr19_5609442_- | intronic |
| ADediting_783374 | chr19_5609468_- | intronic |
| ADediting_783375 | chr19_5609472_- | intronic |
| ADediting_783376 | chr19_5609477_- | intronic |
| ADediting_783377 | chr19_5609483_- | intronic |
| ADediting_783380 | chr19_5609497_- | intronic |
| ADediting_783381 | chr19_5609498_- | intronic |
| ADediting_783383 | chr19_5609507_- | intronic |
| ADediting_783385 | chr19_5609913_- | intronic |
| ADediting_783399 | chr19_5614029_- | intronic |
| ADediting_783400 | chr19_5614046_- | intronic |
| ADediting_783401 | chr19_5614059_- | intronic |
| ADediting_783402 | chr19_5614091_- | intronic |
| ADediting_783403 | chr19_5614123_- | intronic |
| ADediting_783404 | chr19_5614124_- | intronic |
| ADediting_783405 | chr19_5614125_- | intronic |
| ADediting_783406 | chr19_5614126_- | intronic |
| ADediting_783407 | chr19_5614172_- | intronic |
| ADediting_783408 | chr19_5614190_- | intronic |
| ADediting_783409 | chr19_5614219_- | intronic |
| ADediting_783410 | chr19_5614225_- | intronic |
| ADediting_783415 | chr19_5614993_- | intronic |
| ADediting_783416 | chr19_5615056_- | intronic |
| ADediting_783417 | chr19_5615110_- | intronic |
| ADediting_783418 | chr19_5615190_- | intronic |
| ADediting_783419 | chr19_5615198_- | intronic |
| ADediting_783421 | chr19_5615233_- | intronic |
| ADediting_783422 | chr19_5615268_- | intronic |
| ADediting_783423 | chr19_5615269_- | intronic |
| ADediting_783424 | chr19_5615272_- | intronic |
| ADediting_783425 | chr19_5615349_- | intronic |
| ADediting_783426 | chr19_5616834_- | intronic |
| ADediting_783427 | chr19_5616922_- | intronic |
| ADediting_783428 | chr19_5619595_- | intronic |
| ADediting_783429 | chr19_5619681_- | intronic |
| ADediting_783430 | chr19_5619689_- | intronic |
| ADediting_783431 | chr19_5619723_- | intronic |
| ADediting_783432 | chr19_5619783_- | intronic |
| ADediting_783433 | chr19_5619788_- | intronic |
| ADediting_1559160 | chr19_5596071_- | intronic |
| ADediting_1559161 | chr19_5596396_- | intronic |
| ADediting_1559162 | chr19_5596406_- | intronic |
| ADediting_1559163 | chr19_5596466_- | intronic |
| ADediting_1559164 | chr19_5596477_- | intronic |
| ADediting_1559165 | chr19_5596505_- | intronic |
| ADediting_1559166 | chr19_5596522_- | intronic |
| ADediting_1559167 | chr19_5596589_- | intronic |
| ADediting_1559168 | chr19_5596624_- | intronic |
| ADediting_1559169 | chr19_5597873_- | intronic |
| ADediting_1559170 | chr19_5604223_- | intronic |
| ADediting_1559171 | chr19_5604322_- | intronic |
| ADediting_1559172 | chr19_5604323_- | intronic |
| ADediting_1559173 | chr19_5604336_- | intronic |
| ADediting_1559174 | chr19_5604378_- | intronic |
| ADediting_1559175 | chr19_5605318_- | intronic |
| ADediting_1559176 | chr19_5605372_- | intronic |
| ADediting_1559177 | chr19_5606510_- | intronic |
| ADediting_1559178 | chr19_5608880_- | intronic |
| ADediting_1559179 | chr19_5609471_- | intronic |
| ADediting_1559180 | chr19_5609929_- | intronic |
| ADediting_1631699 | chr19_5608924_- | intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_783285 | chr19_5591533_- | SINE | Alu | Name=AluSx3 |
| ADediting_783286 | chr19_5591550_- | SINE | Alu | Name=AluSx3 |
| ADediting_783288 | chr19_5594764_- | SINE | Alu | Name=AluJo |
| ADediting_783289 | chr19_5594790_- | SINE | Alu | Name=AluJo |
| ADediting_783290 | chr19_5594973_- | SINE | Alu | Name=AluJr |
| ADediting_783291 | chr19_5594987_- | SINE | Alu | Name=AluJr |
| ADediting_783292 | chr19_5595068_- | SINE | Alu | Name=AluJr |
| ADediting_783295 | chr19_5596006_- | SINE | Alu | Name=AluSg |
| ADediting_783296 | chr19_5596008_- | SINE | Alu | Name=AluSg |
| ADediting_783297 | chr19_5596019_- | SINE | Alu | Name=AluSg |
| ADediting_783298 | chr19_5596083_- | SINE | Alu | Name=AluSg |
| ADediting_783299 | chr19_5596093_- | SINE | Alu | Name=AluSg |
| ADediting_783300 | chr19_5596100_- | SINE | Alu | Name=AluSg |
| ADediting_783301 | chr19_5596114_- | SINE | Alu | Name=AluSg |
| ADediting_783302 | chr19_5596115_- | SINE | Alu | Name=AluSg |
| ADediting_783303 | chr19_5596119_- | SINE | Alu | Name=AluSg |
| ADediting_783304 | chr19_5596135_- | SINE | Alu | Name=AluSg |
| ADediting_783305 | chr19_5596139_- | SINE | Alu | Name=AluSg |
| ADediting_783306 | chr19_5596141_- | SINE | Alu | Name=AluSg |
| ADediting_783307 | chr19_5596151_- | SINE | Alu | Name=AluSg |
| ADediting_783308 | chr19_5596154_- | SINE | Alu | Name=AluSg |
| ADediting_783309 | chr19_5596163_- | SINE | Alu | Name=AluSg |
| ADediting_783310 | chr19_5596180_- | SINE | Alu | Name=AluSg |
| ADediting_783311 | chr19_5596216_- | SINE | Alu | Name=AluSg |
| ADediting_783312 | chr19_5596225_- | SINE | Alu | Name=AluSg |
| ADediting_783313 | chr19_5596227_- | SINE | Alu | Name=AluSg |
| ADediting_783314 | chr19_5596241_- | SINE | Alu | Name=AluSg |
| ADediting_783315 | chr19_5596389_- | SINE | Alu | Name=AluJb |
| ADediting_783316 | chr19_5596391_- | SINE | Alu | Name=AluJb |
| ADediting_783317 | chr19_5596397_- | SINE | Alu | Name=AluJb |
| ADediting_783318 | chr19_5596411_- | SINE | Alu | Name=AluJb |
| ADediting_783319 | chr19_5596447_- | SINE | Alu | Name=AluJb |
| ADediting_783320 | chr19_5596460_- | SINE | Alu | Name=AluJb |
| ADediting_783321 | chr19_5596469_- | SINE | Alu | Name=AluJb |
| ADediting_783322 | chr19_5596473_- | SINE | Alu | Name=AluJb |
| ADediting_783323 | chr19_5596489_- | SINE | Alu | Name=AluJb |
| ADediting_783324 | chr19_5596501_- | SINE | Alu | Name=AluJb |
| ADediting_783325 | chr19_5596509_- | SINE | Alu | Name=AluJb |
| ADediting_783326 | chr19_5596512_- | SINE | Alu | Name=AluJb |
| ADediting_783327 | chr19_5596518_- | SINE | Alu | Name=AluJb |
| ADediting_783328 | chr19_5596520_- | SINE | Alu | Name=AluJb |
| ADediting_783329 | chr19_5596521_- | SINE | Alu | Name=AluJb |
| ADediting_783330 | chr19_5596523_- | SINE | Alu | Name=AluJb |
| ADediting_783331 | chr19_5596526_- | SINE | Alu | Name=AluJb |
| ADediting_783332 | chr19_5596537_- | SINE | Alu | Name=AluJb |
| ADediting_783333 | chr19_5596538_- | SINE | Alu | Name=AluJb |
| ADediting_783334 | chr19_5596560_- | SINE | Alu | Name=AluJb |
| ADediting_783335 | chr19_5596562_- | SINE | Alu | Name=AluJb |
| ADediting_783336 | chr19_5596586_- | SINE | Alu | Name=AluJb |
| ADediting_783337 | chr19_5596615_- | SINE | Alu | Name=AluJb |
| ADediting_783338 | chr19_5596616_- | SINE | Alu | Name=AluJb |
| ADediting_783339 | chr19_5596622_- | SINE | Alu | Name=AluJb |
| ADediting_783340 | chr19_5604160_- | SINE | Alu | Name=AluJb |
| ADediting_783341 | chr19_5604292_- | SINE | Alu | Name=AluJb |
| ADediting_783342 | chr19_5604310_- | SINE | Alu | Name=AluJb |
| ADediting_783343 | chr19_5605233_- | SINE | Alu | Name=AluSx1 |
| ADediting_783344 | chr19_5605242_- | SINE | Alu | Name=AluSx1 |
| ADediting_783345 | chr19_5605308_- | SINE | Alu | Name=AluSx1 |
| ADediting_783346 | chr19_5605332_- | SINE | Alu | Name=AluSx1 |
| ADediting_783347 | chr19_5605378_- | SINE | Alu | Name=AluSx1 |
| ADediting_783348 | chr19_5607098_- | SINE | Alu | Name=AluY |
| ADediting_783349 | chr19_5607103_- | SINE | Alu | Name=AluY |
| ADediting_783351 | chr19_5608793_- | SINE | Alu | Name=AluSx1 |
| ADediting_783352 | chr19_5608804_- | SINE | Alu | Name=AluSx1 |
| ADediting_783353 | chr19_5608805_- | SINE | Alu | Name=AluSx1 |
| ADediting_783354 | chr19_5608856_- | SINE | Alu | Name=AluSx1 |
| ADediting_783355 | chr19_5608865_- | SINE | Alu | Name=AluSx1 |
| ADediting_783356 | chr19_5608885_- | SINE | Alu | Name=AluSx1 |
| ADediting_783357 | chr19_5608891_- | SINE | Alu | Name=AluSx1 |
| ADediting_783358 | chr19_5608900_- | SINE | Alu | Name=AluSx1 |
| ADediting_783359 | chr19_5608913_- | SINE | Alu | Name=AluSx1 |
| ADediting_783360 | chr19_5608926_- | SINE | Alu | Name=AluSx1 |
| ADediting_783361 | chr19_5608936_- | SINE | Alu | Name=AluSx1 |
| ADediting_783362 | chr19_5608965_- | SINE | Alu | Name=AluSx1 |
| ADediting_783363 | chr19_5608966_- | SINE | Alu | Name=AluSx1 |
| ADediting_783364 | chr19_5609019_- | SINE | Alu | Name=AluSx1 |
| ADediting_783365 | chr19_5609361_- | SINE | Alu | Name=AluSx |
| ADediting_783366 | chr19_5609369_- | SINE | Alu | Name=AluSx |
| ADediting_783367 | chr19_5609371_- | SINE | Alu | Name=AluSx |
| ADediting_783368 | chr19_5609389_- | SINE | Alu | Name=AluSx |
| ADediting_783370 | chr19_5609424_- | SINE | Alu | Name=AluSx |
| ADediting_783371 | chr19_5609432_- | SINE | Alu | Name=AluSx |
| ADediting_783372 | chr19_5609442_- | SINE | Alu | Name=AluSx |
| ADediting_783374 | chr19_5609468_- | SINE | Alu | Name=AluSx |
| ADediting_783375 | chr19_5609472_- | SINE | Alu | Name=AluSx |
| ADediting_783376 | chr19_5609477_- | SINE | Alu | Name=AluSx |
| ADediting_783377 | chr19_5609483_- | SINE | Alu | Name=AluSx |
| ADediting_783380 | chr19_5609497_- | SINE | Alu | Name=AluSx |
| ADediting_783381 | chr19_5609498_- | SINE | Alu | Name=AluSx |
| ADediting_783383 | chr19_5609507_- | SINE | Alu | Name=AluSx |
| ADediting_783385 | chr19_5609913_- | SINE | Alu | Name=AluJo |
| ADediting_783399 | chr19_5614029_- | SINE | Alu | Name=AluSq2 |
| ADediting_783400 | chr19_5614046_- | SINE | Alu | Name=AluSq2 |
| ADediting_783401 | chr19_5614059_- | SINE | Alu | Name=AluSq2 |
| ADediting_783402 | chr19_5614091_- | SINE | Alu | Name=AluSq2 |
| ADediting_783403 | chr19_5614123_- | SINE | Alu | Name=AluSq2 |
| ADediting_783404 | chr19_5614124_- | SINE | Alu | Name=AluSq2 |
| ADediting_783405 | chr19_5614125_- | SINE | Alu | Name=AluSq2 |
| ADediting_783406 | chr19_5614126_- | SINE | Alu | Name=AluSq2 |
| ADediting_783407 | chr19_5614172_- | SINE | Alu | Name=AluSq2 |
| ADediting_783408 | chr19_5614190_- | SINE | Alu | Name=AluSq2 |
| ADediting_783409 | chr19_5614219_- | SINE | Alu | Name=AluSq2 |
| ADediting_783410 | chr19_5614225_- | SINE | Alu | Name=AluSq2 |
| ADediting_783415 | chr19_5614993_- | SINE | Alu | Name=AluSz |
| ADediting_783416 | chr19_5615056_- | SINE | Alu | Name=AluSz |
| ADediting_783417 | chr19_5615110_- | SINE | Alu | Name=AluSx3 |
| ADediting_783418 | chr19_5615190_- | SINE | Alu | Name=AluSx3 |
| ADediting_783419 | chr19_5615198_- | SINE | Alu | Name=AluSx3 |
| ADediting_783421 | chr19_5615233_- | SINE | Alu | Name=AluSx3 |
| ADediting_783422 | chr19_5615268_- | SINE | Alu | Name=AluSx3 |
| ADediting_783423 | chr19_5615269_- | SINE | Alu | Name=AluSx3 |
| ADediting_783424 | chr19_5615272_- | SINE | Alu | Name=AluSx3 |
| ADediting_783425 | chr19_5615349_- | SINE | Alu | Name=AluSx3 |
| ADediting_783426 | chr19_5616834_- | SINE | Alu | Name=AluSx4 |
| ADediting_783427 | chr19_5616922_- | SINE | Alu | Name=AluSx4 |
| ADediting_783428 | chr19_5619595_- | SINE | Alu | Name=AluSq |
| ADediting_783429 | chr19_5619681_- | SINE | Alu | Name=AluSq |
| ADediting_783430 | chr19_5619689_- | SINE | Alu | Name=AluSq |
| ADediting_783431 | chr19_5619723_- | SINE | Alu | Name=AluSq |
| ADediting_783432 | chr19_5619783_- | SINE | Alu | Name=AluSq |
| ADediting_783433 | chr19_5619788_- | SINE | Alu | Name=AluSq |
| ADediting_1559160 | chr19_5596071_- | SINE | Alu | Name=AluSg |
| ADediting_1559161 | chr19_5596396_- | SINE | Alu | Name=AluJb |
| ADediting_1559162 | chr19_5596406_- | SINE | Alu | Name=AluJb |
| ADediting_1559163 | chr19_5596466_- | SINE | Alu | Name=AluJb |
| ADediting_1559164 | chr19_5596477_- | SINE | Alu | Name=AluJb |
| ADediting_1559165 | chr19_5596505_- | SINE | Alu | Name=AluJb |
| ADediting_1559166 | chr19_5596522_- | SINE | Alu | Name=AluJb |
| ADediting_1559167 | chr19_5596589_- | SINE | Alu | Name=AluJb |
| ADediting_1559168 | chr19_5596624_- | SINE | Alu | Name=AluJb |
| ADediting_1559169 | chr19_5597873_- | SINE | Alu | Name=AluSz |
| ADediting_1559170 | chr19_5604223_- | SINE | Alu | Name=AluJb |
| ADediting_1559171 | chr19_5604322_- | SINE | Alu | Name=AluJb |
| ADediting_1559172 | chr19_5604323_- | SINE | Alu | Name=AluJb |
| ADediting_1559173 | chr19_5604336_- | SINE | Alu | Name=AluJb |
| ADediting_1559174 | chr19_5604378_- | SINE | Alu | Name=AluJb |
| ADediting_1559175 | chr19_5605318_- | SINE | Alu | Name=AluSx1 |
| ADediting_1559176 | chr19_5605372_- | SINE | Alu | Name=AluSx1 |
| ADediting_1559177 | chr19_5606510_- | SINE | Alu | Name=AluJr |
| ADediting_1559178 | chr19_5608880_- | SINE | Alu | Name=AluSx1 |
| ADediting_1559179 | chr19_5609471_- | SINE | Alu | Name=AluSx |
| ADediting_1559180 | chr19_5609929_- | SINE | Alu | Name=AluJo |
| ADediting_1631699 | chr19_5608924_- | SINE | Alu | Name=AluSx1 |
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RNA A-to-I editing events in the alternative splicing sites for SAFB2 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| ES | ADediting_783356 | chr19_5608885_- | 5608878:5608900 | 3ss | 5i | AATTTTTGTATTTTCAGTAGAGA | 2.95 | AATTTTTGTATTTTCGGTAGAGA | 4.28 |
| ES | ADediting_783356 | chr19_5608885_- | 5608881:5608903 | 3ss | 2i | GCTAATTTTTGTATTTTCAGTAG | 4.27 | GCTAATTTTTGTATTTTCGGTAG | -3.68 |
| ES | ADediting_783357 | chr19_5608891_- | 5608878:5608900 | 3ss | 11i | AATTTTTGTATTTTCAGTAGAGA | 2.95 | AATTTTTGTGTTTTCAGTAGAGA | 4.51 |
| ES | ADediting_783357 | chr19_5608891_- | 5608881:5608903 | 3ss | 8i | GCTAATTTTTGTATTTTCAGTAG | 4.27 | GCTAATTTTTGTGTTTTCAGTAG | 4.98 |
| ES | ADediting_783358 | chr19_5608900_- | 5608878:5608900 | 3ss | 20i | AATTTTTGTATTTTCAGTAGAGA | 2.95 | GATTTTTGTATTTTCAGTAGAGA | 3.16 |
| ES | ADediting_783358 | chr19_5608900_- | 5608881:5608903 | 3ss | 17i | GCTAATTTTTGTATTTTCAGTAG | 4.27 | GCTGATTTTTGTATTTTCAGTAG | 4.70 |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for SAFB2 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |