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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for RALGPS1 |
 Gene summary |
| Gene information | Gene symbol | RALGPS1 | Gene ID | 9649 |
| Gene name | Ral GEF with PH domain and SH3 binding motif 1 | |
| Synonyms | RALGEF2|RALGPS1A | |
| Cytomap | 9q33.3 | |
| Type of gene | protein-coding | |
| Description | ras-specific guanine nucleotide-releasing factor RalGPS1Ral guanine nucleotide exchange factor RalGPS1Aral guanine nucleotide exchange factor 2ralA exchange factor RalGPS1 | |
| Modification date | 20200313 | |
| UniProtAcc | Q5JS13, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
| RALGPS1 | GO:0032485 | regulation of Ral protein signal transduction | 10747847 |
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RNA A-to-I events for RALGPS1 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA editing frequencies across three data sets. |
 |
| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA A-to-I editing events in AD. |
| ADediting_1440614(126916675, +), ADediting_1440615(126925401, +), ADediting_1440616(126925427, +), ADediting_1440617(126925433, +), ADediting_1440618(126925450, +), ADediting_1440619(126925619, +), ADediting_1440620(126946347, +), ADediting_1440621(126946358, +), ADediting_1440622(126946369, +), ADediting_1440623(126946372, +), ADediting_1440624(126946373, +), ADediting_1440625(126946374, +), ADediting_1440626(126946413, +), ADediting_1440627(126946423, +), ADediting_1440628(126966246, +), ADediting_1440629(126966261, +), ADediting_1440630(126966290, +), ADediting_1440631(126966337, +), ADediting_1440632(126966370, +), ADediting_1440633(126966371, +), ADediting_1440634(126966372, +), ADediting_1440635(126966376, +), ADediting_1440636(126966380, +), ADediting_1440637(126966416, +), ADediting_1440638(126966450, +), ADediting_1440639(126966476, +), ADediting_1440640(126968106, +), ADediting_1440641(126968223, +), ADediting_1440642(126968237, +), ADediting_1440643(126968279, +), ADediting_1440644(126968867, +), ADediting_1440645(126968884, +), ADediting_1440646(126968893, +), ADediting_1440647(126968901, +), ADediting_1440648(126969260, +), ADediting_1440649(126969277, +), ADediting_1440650(126973973, +), ADediting_1440651(126973976, +), ADediting_1440652(126988524, +), ADediting_1440653(126989001, +), ADediting_1440654(126998545, +), ADediting_1440655(126998582, +), ADediting_1440656(126998599, +), ADediting_1440657(126998611, +), ADediting_1440658(127000605, +), ADediting_1440659(127000629, +), ADediting_1440660(127000997, +), ADediting_1440661(127001019, +), ADediting_1440662(127001020, +), ADediting_1440663(127001026, +), ADediting_1440664(127001028, +), ADediting_1440665(127001141, +), ADediting_1440666(127001180, +), ADediting_1440667(127001202, +), ADediting_1440668(127001212, +), ADediting_1440669(127001867, +), ADediting_1440670(127004194, +), ADediting_1440671(127004215, +), ADediting_1440672(127004271, +), ADediting_1440673(127004335, +), ADediting_1440674(127018030, +), ADediting_1440675(127018031, +), ADediting_1440676(127018095, +), ADediting_1440677(127018096, +), ADediting_1440678(127018109, +), ADediting_1440679(127019392, +), ADediting_1440680(127019402, +), ADediting_1440681(127019457, +), ADediting_1440682(127019512, +), ADediting_1440683(127019518, +), ADediting_1440684(127019529, +), ADediting_1440685(127019534, +), ADediting_1440686(127019590, +), ADediting_1440687(127041275, +), ADediting_1440688(127041292, +), ADediting_1440689(127041432, +), ADediting_1440690(127046654, +), ADediting_1440691(127181826, +), ADediting_1440692(127181843, +), ADediting_1440693(127181905, +), ADediting_1440694(127181912, +), ADediting_1440695(127181923, +), ADediting_1440696(127181924, +), ADediting_1440697(127181929, +), ADediting_1440698(127181932, +), ADediting_1440699(127181934, +), ADediting_1440700(127181935, +), ADediting_1440701(127181945, +), ADediting_1440702(127181956, +), ADediting_1440703(127181972, +), ADediting_1440704(127181973, +), ADediting_1440705(127182003, +), ADediting_1440706(127182004, +), ADediting_1440707(127182007, +), ADediting_1440708(127182010, +), ADediting_1440709(127182082, +), ADediting_1440710(127182083, +), ADediting_1440711(127182232, +), ADediting_1440712(127182703, +), ADediting_1440713(127182762, +), ADediting_1440714(127182774, +), ADediting_1440715(127182776, +), ADediting_1440716(127182779, +), ADediting_1440717(127182780, +), ADediting_1440718(127182851, +), ADediting_1440719(127182857, +), ADediting_1440720(127182900, +), ADediting_1440721(127182971, +), ADediting_1440722(127183812, +), ADediting_1440723(127183894, +), ADediting_1440724(127183895, +), ADediting_1440725(127183913, +), ADediting_1440726(127183914, +), ADediting_1440727(127184088, +), ADediting_1440728(127184202, +), ADediting_1440729(127184218, +), ADediting_1440730(127184259, +), ADediting_1440731(127184272, +), ADediting_1440732(127188162, +), ADediting_1440733(127188179, +), ADediting_1440734(127188201, +), ADediting_1440735(127188266, +), ADediting_1440736(127188286, +), ADediting_1440737(127188751, +), ADediting_1440738(127188830, +), ADediting_1440739(127188833, +), ADediting_1440740(127188857, +), ADediting_1440741(127188871, +), ADediting_1440742(127188877, +), ADediting_1440743(127188879, +), ADediting_1440744(127188880, +), ADediting_1440745(127188885, +), ADediting_1440746(127188901, +), ADediting_1440747(127188902, +), ADediting_1440748(127188912, +), ADediting_1440749(127188915, +), ADediting_1440750(127188920, +), ADediting_1440751(127188928, +), ADediting_1440752(127188933, +), ADediting_1440753(127188945, +), ADediting_1440754(127188949, +), ADediting_1440755(127188950, +), ADediting_1440756(127188957, +), ADediting_1440757(127188960, +), ADediting_1440758(127188965, +), ADediting_1440759(127188970, +), ADediting_1440760(127188987, +), ADediting_1440761(127190347, +), ADediting_1440762(127190351, +), ADediting_1440763(127190359, +), ADediting_1440764(127190390, +), ADediting_1440765(127190427, +), ADediting_1440766(127190441, +), ADediting_1440767(127190450, +), ADediting_1440768(127190471, +), ADediting_1440769(127190473, +), ADediting_1440770(127192543, +), ADediting_1440771(127192578, +), ADediting_1440772(127192646, +), ADediting_1440773(127196313, +), ADediting_1440774(127203815, +), ADediting_1440775(127203879, +), ADediting_1440776(127203880, +), ADediting_1440777(127203936, +), ADediting_1440778(127204860, +), ADediting_1440779(127205235, +), ADediting_1440780(127205237, +), ADediting_1440781(127206968, +), ADediting_1592199(126988510, +), ADediting_1592200(126988511, +), ADediting_1592201(127044089, +), ADediting_1592202(127190385, +), ADediting_1592203(127203842, +), ADediting_1592204(127203890, +), ADediting_1592205(127205231, +), ADediting_1672088(126930463, +), ADediting_1672089(126998557, +), ADediting_1672090(127019408, +), ADediting_1672091(127044100, +), ADediting_1672092(127044106, +), |
Top |
RNA editing positional annotations for RALGPS1 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| ADediting_1440723 | chr9_127183894_+ | nonsynonymous SNV | ENST00000394022.7 | c.A938G | p.Q313R | 0.711 | 0.007 | 0.08 |
| ADediting_1440724 | chr9_127183895_+ | synonymous SNV | ENST00000394022.7 | c.A939G | p.Q313Q | . | . | . |
| ADediting_1440725 | chr9_127183913_+ | synonymous SNV | ENST00000394022.7 | c.A957G | p.A319A | . | . | . |
| ADediting_1440726 | chr9_127183914_+ | nonsynonymous SNV | ENST00000394022.7 | c.A958G | p.R320G | 0.318 | 0.001 | -0.12 |
| ADediting_1440727 | chr9_127184088_+ | nonsynonymous SNV | ENST00000394022.7 | c.A1132G | p.S378G | 0.0 | 0.002 | -1.68 |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_1440614 | chr9_126916675_+ | intronic |
| ADediting_1440615 | chr9_126925401_+ | intronic |
| ADediting_1440616 | chr9_126925427_+ | intronic |
| ADediting_1440617 | chr9_126925433_+ | intronic |
| ADediting_1440618 | chr9_126925450_+ | intronic |
| ADediting_1440619 | chr9_126925619_+ | intronic |
| ADediting_1440620 | chr9_126946347_+ | intronic |
| ADediting_1440621 | chr9_126946358_+ | intronic |
| ADediting_1440622 | chr9_126946369_+ | intronic |
| ADediting_1440623 | chr9_126946372_+ | intronic |
| ADediting_1440624 | chr9_126946373_+ | intronic |
| ADediting_1440625 | chr9_126946374_+ | intronic |
| ADediting_1440626 | chr9_126946413_+ | intronic |
| ADediting_1440627 | chr9_126946423_+ | intronic |
| ADediting_1440628 | chr9_126966246_+ | intronic |
| ADediting_1440629 | chr9_126966261_+ | intronic |
| ADediting_1440630 | chr9_126966290_+ | intronic |
| ADediting_1440631 | chr9_126966337_+ | intronic |
| ADediting_1440632 | chr9_126966370_+ | intronic |
| ADediting_1440633 | chr9_126966371_+ | intronic |
| ADediting_1440634 | chr9_126966372_+ | intronic |
| ADediting_1440635 | chr9_126966376_+ | intronic |
| ADediting_1440636 | chr9_126966380_+ | intronic |
| ADediting_1440637 | chr9_126966416_+ | intronic |
| ADediting_1440638 | chr9_126966450_+ | intronic |
| ADediting_1440639 | chr9_126966476_+ | intronic |
| ADediting_1440640 | chr9_126968106_+ | intronic |
| ADediting_1440641 | chr9_126968223_+ | intronic |
| ADediting_1440642 | chr9_126968237_+ | intronic |
| ADediting_1440643 | chr9_126968279_+ | intronic |
| ADediting_1440644 | chr9_126968867_+ | intronic |
| ADediting_1440645 | chr9_126968884_+ | intronic |
| ADediting_1440646 | chr9_126968893_+ | intronic |
| ADediting_1440647 | chr9_126968901_+ | intronic |
| ADediting_1440648 | chr9_126969260_+ | intronic |
| ADediting_1440649 | chr9_126969277_+ | intronic |
| ADediting_1440650 | chr9_126973973_+ | intronic |
| ADediting_1440651 | chr9_126973976_+ | intronic |
| ADediting_1440652 | chr9_126988524_+ | intronic |
| ADediting_1440653 | chr9_126989001_+ | intronic |
| ADediting_1440654 | chr9_126998545_+ | intronic |
| ADediting_1440655 | chr9_126998582_+ | intronic |
| ADediting_1440656 | chr9_126998599_+ | intronic |
| ADediting_1440657 | chr9_126998611_+ | intronic |
| ADediting_1440658 | chr9_127000605_+ | intronic |
| ADediting_1440659 | chr9_127000629_+ | intronic |
| ADediting_1440660 | chr9_127000997_+ | intronic |
| ADediting_1440661 | chr9_127001019_+ | intronic |
| ADediting_1440662 | chr9_127001020_+ | intronic |
| ADediting_1440663 | chr9_127001026_+ | intronic |
| ADediting_1440664 | chr9_127001028_+ | intronic |
| ADediting_1440665 | chr9_127001141_+ | intronic |
| ADediting_1440666 | chr9_127001180_+ | intronic |
| ADediting_1440667 | chr9_127001202_+ | intronic |
| ADediting_1440668 | chr9_127001212_+ | intronic |
| ADediting_1440669 | chr9_127001867_+ | intronic |
| ADediting_1440670 | chr9_127004194_+ | intronic |
| ADediting_1440671 | chr9_127004215_+ | intronic |
| ADediting_1440672 | chr9_127004271_+ | intronic |
| ADediting_1440673 | chr9_127004335_+ | intronic |
| ADediting_1440674 | chr9_127018030_+ | intronic |
| ADediting_1440675 | chr9_127018031_+ | intronic |
| ADediting_1440676 | chr9_127018095_+ | intronic |
| ADediting_1440677 | chr9_127018096_+ | intronic |
| ADediting_1440678 | chr9_127018109_+ | intronic |
| ADediting_1440679 | chr9_127019392_+ | intronic |
| ADediting_1440680 | chr9_127019402_+ | intronic |
| ADediting_1440681 | chr9_127019457_+ | intronic |
| ADediting_1440682 | chr9_127019512_+ | intronic |
| ADediting_1440683 | chr9_127019518_+ | intronic |
| ADediting_1440684 | chr9_127019529_+ | intronic |
| ADediting_1440685 | chr9_127019534_+ | intronic |
| ADediting_1440686 | chr9_127019590_+ | intronic |
| ADediting_1440687 | chr9_127041275_+ | intronic |
| ADediting_1440688 | chr9_127041292_+ | intronic |
| ADediting_1440689 | chr9_127041432_+ | intronic |
| ADediting_1440690 | chr9_127046654_+ | intronic |
| ADediting_1440691 | chr9_127181826_+ | intronic |
| ADediting_1440692 | chr9_127181843_+ | intronic |
| ADediting_1440693 | chr9_127181905_+ | intronic |
| ADediting_1440694 | chr9_127181912_+ | intronic |
| ADediting_1440695 | chr9_127181923_+ | intronic |
| ADediting_1440696 | chr9_127181924_+ | intronic |
| ADediting_1440697 | chr9_127181929_+ | intronic |
| ADediting_1440698 | chr9_127181932_+ | intronic |
| ADediting_1440699 | chr9_127181934_+ | intronic |
| ADediting_1440700 | chr9_127181935_+ | intronic |
| ADediting_1440701 | chr9_127181945_+ | intronic |
| ADediting_1440702 | chr9_127181956_+ | intronic |
| ADediting_1440703 | chr9_127181972_+ | intronic |
| ADediting_1440704 | chr9_127181973_+ | intronic |
| ADediting_1440705 | chr9_127182003_+ | intronic |
| ADediting_1440706 | chr9_127182004_+ | intronic |
| ADediting_1440707 | chr9_127182007_+ | intronic |
| ADediting_1440708 | chr9_127182010_+ | intronic |
| ADediting_1440709 | chr9_127182082_+ | intronic |
| ADediting_1440710 | chr9_127182083_+ | intronic |
| ADediting_1440711 | chr9_127182232_+ | intronic |
| ADediting_1440712 | chr9_127182703_+ | intronic |
| ADediting_1440713 | chr9_127182762_+ | intronic |
| ADediting_1440714 | chr9_127182774_+ | intronic |
| ADediting_1440715 | chr9_127182776_+ | intronic |
| ADediting_1440716 | chr9_127182779_+ | intronic |
| ADediting_1440717 | chr9_127182780_+ | intronic |
| ADediting_1440718 | chr9_127182851_+ | intronic |
| ADediting_1440719 | chr9_127182857_+ | intronic |
| ADediting_1440720 | chr9_127182900_+ | intronic |
| ADediting_1440721 | chr9_127182971_+ | intronic |
| ADediting_1440722 | chr9_127183812_+ | intronic |
| ADediting_1440723 | chr9_127183894_+ | exonic |
| ADediting_1440724 | chr9_127183895_+ | exonic |
| ADediting_1440725 | chr9_127183913_+ | exonic |
| ADediting_1440726 | chr9_127183914_+ | exonic |
| ADediting_1440727 | chr9_127184088_+ | exonic |
| ADediting_1440728 | chr9_127184202_+ | UTR3 |
| ADediting_1440729 | chr9_127184218_+ | UTR3 |
| ADediting_1440730 | chr9_127184259_+ | UTR3 |
| ADediting_1440731 | chr9_127184272_+ | UTR3 |
| ADediting_1440732 | chr9_127188162_+ | intronic |
| ADediting_1440733 | chr9_127188179_+ | intronic |
| ADediting_1440734 | chr9_127188201_+ | intronic |
| ADediting_1440735 | chr9_127188266_+ | intronic |
| ADediting_1440736 | chr9_127188286_+ | intronic |
| ADediting_1440737 | chr9_127188751_+ | intronic |
| ADediting_1440738 | chr9_127188830_+ | intronic |
| ADediting_1440739 | chr9_127188833_+ | intronic |
| ADediting_1440740 | chr9_127188857_+ | intronic |
| ADediting_1440741 | chr9_127188871_+ | intronic |
| ADediting_1440742 | chr9_127188877_+ | intronic |
| ADediting_1440743 | chr9_127188879_+ | intronic |
| ADediting_1440744 | chr9_127188880_+ | intronic |
| ADediting_1440745 | chr9_127188885_+ | intronic |
| ADediting_1440746 | chr9_127188901_+ | intronic |
| ADediting_1440747 | chr9_127188902_+ | intronic |
| ADediting_1440748 | chr9_127188912_+ | intronic |
| ADediting_1440749 | chr9_127188915_+ | intronic |
| ADediting_1440750 | chr9_127188920_+ | intronic |
| ADediting_1440751 | chr9_127188928_+ | intronic |
| ADediting_1440752 | chr9_127188933_+ | intronic |
| ADediting_1440753 | chr9_127188945_+ | intronic |
| ADediting_1440754 | chr9_127188949_+ | intronic |
| ADediting_1440755 | chr9_127188950_+ | intronic |
| ADediting_1440756 | chr9_127188957_+ | intronic |
| ADediting_1440757 | chr9_127188960_+ | intronic |
| ADediting_1440758 | chr9_127188965_+ | intronic |
| ADediting_1440759 | chr9_127188970_+ | intronic |
| ADediting_1440760 | chr9_127188987_+ | intronic |
| ADediting_1440761 | chr9_127190347_+ | intronic |
| ADediting_1440762 | chr9_127190351_+ | intronic |
| ADediting_1440763 | chr9_127190359_+ | intronic |
| ADediting_1440764 | chr9_127190390_+ | intronic |
| ADediting_1440765 | chr9_127190427_+ | intronic |
| ADediting_1440766 | chr9_127190441_+ | intronic |
| ADediting_1440767 | chr9_127190450_+ | intronic |
| ADediting_1440768 | chr9_127190471_+ | intronic |
| ADediting_1440769 | chr9_127190473_+ | intronic |
| ADediting_1440770 | chr9_127192543_+ | intronic |
| ADediting_1440771 | chr9_127192578_+ | intronic |
| ADediting_1440772 | chr9_127192646_+ | intronic |
| ADediting_1440773 | chr9_127196313_+ | intronic |
| ADediting_1440774 | chr9_127203815_+ | intronic |
| ADediting_1440775 | chr9_127203879_+ | intronic |
| ADediting_1440776 | chr9_127203880_+ | intronic |
| ADediting_1440777 | chr9_127203936_+ | intronic |
| ADediting_1440778 | chr9_127204860_+ | intronic |
| ADediting_1440779 | chr9_127205235_+ | intronic |
| ADediting_1440780 | chr9_127205237_+ | intronic |
| ADediting_1440781 | chr9_127206968_+ | intronic |
| ADediting_1592199 | chr9_126988510_+ | intronic |
| ADediting_1592200 | chr9_126988511_+ | intronic |
| ADediting_1592201 | chr9_127044089_+ | intronic |
| ADediting_1592202 | chr9_127190385_+ | intronic |
| ADediting_1592203 | chr9_127203842_+ | intronic |
| ADediting_1592204 | chr9_127203890_+ | intronic |
| ADediting_1592205 | chr9_127205231_+ | intronic |
| ADediting_1672088 | chr9_126930463_+ | intronic |
| ADediting_1672089 | chr9_126998557_+ | intronic |
| ADediting_1672090 | chr9_127019408_+ | intronic |
| ADediting_1672091 | chr9_127044100_+ | intronic |
| ADediting_1672092 | chr9_127044106_+ | intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_1440614 | chr9_126916675_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1440615 | chr9_126925401_+ | SINE | Alu | Name=AluSz |
| ADediting_1440616 | chr9_126925427_+ | SINE | Alu | Name=AluSz |
| ADediting_1440617 | chr9_126925433_+ | SINE | Alu | Name=AluSz |
| ADediting_1440618 | chr9_126925450_+ | SINE | Alu | Name=AluSz |
| ADediting_1440619 | chr9_126925619_+ | SINE | Alu | Name=AluJo |
| ADediting_1440620 | chr9_126946347_+ | SINE | Alu | Name=AluSx |
| ADediting_1440621 | chr9_126946358_+ | SINE | Alu | Name=AluSx |
| ADediting_1440622 | chr9_126946369_+ | SINE | Alu | Name=AluSx |
| ADediting_1440623 | chr9_126946372_+ | SINE | Alu | Name=AluSx |
| ADediting_1440624 | chr9_126946373_+ | SINE | Alu | Name=AluSx |
| ADediting_1440625 | chr9_126946374_+ | SINE | Alu | Name=AluSx |
| ADediting_1440626 | chr9_126946413_+ | SINE | Alu | Name=AluSx |
| ADediting_1440627 | chr9_126946423_+ | SINE | Alu | Name=AluSx |
| ADediting_1440628 | chr9_126966246_+ | SINE | Alu | Name=AluJo |
| ADediting_1440629 | chr9_126966261_+ | SINE | Alu | Name=AluJo |
| ADediting_1440630 | chr9_126966290_+ | SINE | Alu | Name=AluJo |
| ADediting_1440631 | chr9_126966337_+ | SINE | Alu | Name=AluJo |
| ADediting_1440632 | chr9_126966370_+ | SINE | Alu | Name=AluJo |
| ADediting_1440633 | chr9_126966371_+ | SINE | Alu | Name=AluJo |
| ADediting_1440634 | chr9_126966372_+ | SINE | Alu | Name=AluJo |
| ADediting_1440635 | chr9_126966376_+ | SINE | Alu | Name=AluJo |
| ADediting_1440636 | chr9_126966380_+ | SINE | Alu | Name=AluJo |
| ADediting_1440637 | chr9_126966416_+ | SINE | Alu | Name=AluJo |
| ADediting_1440638 | chr9_126966450_+ | SINE | Alu | Name=AluJo |
| ADediting_1440639 | chr9_126966476_+ | SINE | Alu | Name=AluJo |
| ADediting_1440640 | chr9_126968106_+ | SINE | Alu | Name=AluSc |
| ADediting_1440641 | chr9_126968223_+ | SINE | Alu | Name=AluSc |
| ADediting_1440642 | chr9_126968237_+ | SINE | Alu | Name=AluSc |
| ADediting_1440643 | chr9_126968279_+ | SINE | Alu | Name=AluSc |
| ADediting_1440644 | chr9_126968867_+ | SINE | Alu | Name=AluSp |
| ADediting_1440645 | chr9_126968884_+ | SINE | Alu | Name=AluSp |
| ADediting_1440646 | chr9_126968893_+ | SINE | Alu | Name=AluSp |
| ADediting_1440647 | chr9_126968901_+ | SINE | Alu | Name=AluSp |
| ADediting_1440648 | chr9_126969260_+ | SINE | Alu | Name=AluJo |
| ADediting_1440649 | chr9_126969277_+ | SINE | Alu | Name=AluJo |
| ADediting_1440650 | chr9_126973973_+ | SINE | Alu | Name=AluSz |
| ADediting_1440651 | chr9_126973976_+ | SINE | Alu | Name=AluSz |
| ADediting_1440652 | chr9_126988524_+ | SINE | Alu | Name=AluJr |
| ADediting_1440653 | chr9_126989001_+ | SINE | Alu | Name=AluJo |
| ADediting_1440654 | chr9_126998545_+ | LINE | L1 | Name=L1PA4 |
| ADediting_1440655 | chr9_126998582_+ | LINE | L1 | Name=L1PA4 |
| ADediting_1440656 | chr9_126998599_+ | LINE | L1 | Name=L1PA4 |
| ADediting_1440657 | chr9_126998611_+ | LINE | L1 | Name=L1PA4 |
| ADediting_1440658 | chr9_127000605_+ | SINE | Alu | Name=AluSp |
| ADediting_1440659 | chr9_127000629_+ | SINE | Alu | Name=AluSp |
| ADediting_1440660 | chr9_127000997_+ | SINE | Alu | Name=AluJr |
| ADediting_1440661 | chr9_127001019_+ | SINE | Alu | Name=AluJr |
| ADediting_1440662 | chr9_127001020_+ | SINE | Alu | Name=AluJr |
| ADediting_1440663 | chr9_127001026_+ | SINE | Alu | Name=AluJr |
| ADediting_1440664 | chr9_127001028_+ | SINE | Alu | Name=AluJr |
| ADediting_1440665 | chr9_127001141_+ | SINE | Alu | Name=AluJr |
| ADediting_1440666 | chr9_127001180_+ | SINE | Alu | Name=AluJr |
| ADediting_1440667 | chr9_127001202_+ | SINE | Alu | Name=AluJr |
| ADediting_1440668 | chr9_127001212_+ | SINE | Alu | Name=AluJr |
| ADediting_1440669 | chr9_127001867_+ | SINE | Alu | Name=AluSg |
| ADediting_1440670 | chr9_127004194_+ | SINE | Alu | Name=AluSq2 |
| ADediting_1440671 | chr9_127004215_+ | SINE | Alu | Name=AluSq2 |
| ADediting_1440672 | chr9_127004271_+ | SINE | Alu | Name=AluSq2 |
| ADediting_1440673 | chr9_127004335_+ | SINE | Alu | Name=AluSq2 |
| ADediting_1440674 | chr9_127018030_+ | SINE | Alu | Name=AluSx |
| ADediting_1440675 | chr9_127018031_+ | SINE | Alu | Name=AluSx |
| ADediting_1440676 | chr9_127018095_+ | SINE | Alu | Name=AluSx |
| ADediting_1440677 | chr9_127018096_+ | SINE | Alu | Name=AluSx |
| ADediting_1440678 | chr9_127018109_+ | SINE | Alu | Name=AluSx |
| ADediting_1440679 | chr9_127019392_+ | SINE | Alu | Name=AluY |
| ADediting_1440680 | chr9_127019402_+ | SINE | Alu | Name=AluY |
| ADediting_1440681 | chr9_127019457_+ | SINE | Alu | Name=AluY |
| ADediting_1440682 | chr9_127019512_+ | SINE | Alu | Name=AluY |
| ADediting_1440683 | chr9_127019518_+ | SINE | Alu | Name=AluY |
| ADediting_1440684 | chr9_127019529_+ | SINE | Alu | Name=AluY |
| ADediting_1440685 | chr9_127019534_+ | SINE | Alu | Name=AluY |
| ADediting_1440686 | chr9_127019590_+ | SINE | Alu | Name=AluY |
| ADediting_1440687 | chr9_127041275_+ | SINE | Alu | Name=AluSg |
| ADediting_1440688 | chr9_127041292_+ | SINE | Alu | Name=AluSg |
| ADediting_1440689 | chr9_127041432_+ | LINE | L1 | Name=L1MC3 |
| ADediting_1440690 | chr9_127046654_+ | SINE | Alu | Name=AluJr |
| ADediting_1440709 | chr9_127182082_+ | SINE | Alu | Name=AluJo |
| ADediting_1440710 | chr9_127182083_+ | SINE | Alu | Name=AluJo |
| ADediting_1440711 | chr9_127182232_+ | LTR | ERVL-MaLR | Name=MSTB |
| ADediting_1440712 | chr9_127182703_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1440713 | chr9_127182762_+ | LTR | ERVL-MaLR | Name=MSTB |
| ADediting_1440714 | chr9_127182774_+ | LTR | ERVL-MaLR | Name=MSTB |
| ADediting_1440715 | chr9_127182776_+ | LTR | ERVL-MaLR | Name=MSTB |
| ADediting_1440716 | chr9_127182779_+ | LTR | ERVL-MaLR | Name=MSTB |
| ADediting_1440717 | chr9_127182780_+ | LTR | ERVL-MaLR | Name=MSTB |
| ADediting_1440718 | chr9_127182851_+ | LTR | ERVL-MaLR | Name=MSTB |
| ADediting_1440719 | chr9_127182857_+ | LTR | ERVL-MaLR | Name=MSTB |
| ADediting_1440720 | chr9_127182900_+ | LTR | ERVL-MaLR | Name=MSTB |
| ADediting_1440721 | chr9_127182971_+ | LTR | ERVL-MaLR | Name=MSTB |
| ADediting_1440727 | chr9_127184088_+ | SINE | Alu | Name=AluJb |
| ADediting_1440728 | chr9_127184202_+ | SINE | Alu | Name=AluJb |
| ADediting_1440729 | chr9_127184218_+ | SINE | Alu | Name=AluJb |
| ADediting_1440730 | chr9_127184259_+ | SINE | Alu | Name=AluJb |
| ADediting_1440731 | chr9_127184272_+ | SINE | Alu | Name=AluJb |
| ADediting_1440732 | chr9_127188162_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1440733 | chr9_127188179_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1440734 | chr9_127188201_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1440735 | chr9_127188266_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1440736 | chr9_127188286_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1440737 | chr9_127188751_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1440738 | chr9_127188830_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1440739 | chr9_127188833_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1440740 | chr9_127188857_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1440741 | chr9_127188871_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1440742 | chr9_127188877_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1440743 | chr9_127188879_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1440744 | chr9_127188880_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1440745 | chr9_127188885_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1440746 | chr9_127188901_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1440747 | chr9_127188902_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1440748 | chr9_127188912_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1440749 | chr9_127188915_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1440750 | chr9_127188920_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1440751 | chr9_127188928_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1440752 | chr9_127188933_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1440753 | chr9_127188945_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1440754 | chr9_127188949_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1440755 | chr9_127188950_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1440756 | chr9_127188957_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1440757 | chr9_127188960_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1440758 | chr9_127188965_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1440759 | chr9_127188970_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1440760 | chr9_127188987_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1440761 | chr9_127190347_+ | SINE | Alu | Name=AluJb |
| ADediting_1440762 | chr9_127190351_+ | SINE | Alu | Name=AluJb |
| ADediting_1440763 | chr9_127190359_+ | SINE | Alu | Name=AluJb |
| ADediting_1440764 | chr9_127190390_+ | SINE | Alu | Name=AluJb |
| ADediting_1440765 | chr9_127190427_+ | SINE | Alu | Name=AluJb |
| ADediting_1440766 | chr9_127190441_+ | SINE | Alu | Name=AluJb |
| ADediting_1440767 | chr9_127190450_+ | SINE | Alu | Name=AluJb |
| ADediting_1440768 | chr9_127190471_+ | SINE | Alu | Name=AluJb |
| ADediting_1440769 | chr9_127190473_+ | SINE | Alu | Name=AluJb |
| ADediting_1440770 | chr9_127192543_+ | SINE | Alu | Name=AluJb |
| ADediting_1440771 | chr9_127192578_+ | SINE | Alu | Name=AluJb |
| ADediting_1440772 | chr9_127192646_+ | SINE | Alu | Name=AluJb |
| ADediting_1440773 | chr9_127196313_+ | SINE | MIR | Name=MIRc |
| ADediting_1440781 | chr9_127206968_+ | SINE | MIR | Name=MIRb |
| ADediting_1592199 | chr9_126988510_+ | SINE | Alu | Name=AluJr |
| ADediting_1592200 | chr9_126988511_+ | SINE | Alu | Name=AluJr |
| ADediting_1592201 | chr9_127044089_+ | LINE | L1 | Name=L1MC3 |
| ADediting_1592202 | chr9_127190385_+ | SINE | Alu | Name=AluJb |
| ADediting_1672088 | chr9_126930463_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1672089 | chr9_126998557_+ | LINE | L1 | Name=L1PA4 |
| ADediting_1672090 | chr9_127019408_+ | SINE | Alu | Name=AluY |
| ADediting_1672091 | chr9_127044100_+ | LINE | L1 | Name=L1MC3 |
| ADediting_1672092 | chr9_127044106_+ | LINE | L1 | Name=L1MC3 |
Top |
RNA A-to-I editing events in the alternative splicing sites for RALGPS1 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for RALGPS1 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
Top |
Protein coding region RNA A-to-I editings for RALGPS1 |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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Top |
The effects of the RNA editing to the miRNA binding sites for RALGPS1 |
| RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. |
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| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1440728 | chr9_127184202_+ | ENSG00000136828.19 | ENST00000394022.7 | RALGPS1-207 | hsa-miR-10394-5p | chr9 | 127184198 | 127184204 | 7mer-m8 | 127184180 | 127184205 | 145 | -22.96 |
| ADediting_1440728 | chr9_127184202_+ | ENSG00000136828.19 | ENST00000394022.7 | RALGPS1-207 | hsa-miR-1205 | chr9 | 127184198 | 127184204 | 7mer-m8 | 127184186 | 127184205 | 140 | -15.56 |
| ADediting_1440728 | chr9_127184202_+ | ENSG00000136828.19 | ENST00000394022.7 | RALGPS1-207 | hsa-miR-4269 | chr9 | 127184195 | 127184201 | 7mer-m8 | 127184182 | 127184202 | 159 | -23.62 |
| ADediting_1440728 | chr9_127184202_+ | ENSG00000136828.19 | ENST00000394022.7 | RALGPS1-207 | hsa-miR-6511b-5p | chr9 | 127184197 | 127184203 | 7mer-m8 | 127184181 | 127184204 | 145 | -20.3 |
| ADediting_1440728 | chr9_127184202_+ | ENSG00000136828.19 | ENST00000394022.7 | RALGPS1-207 | hsa-miR-6715b-5p | chr9 | 127184195 | 127184201 | 7mer-m8 | 127184181 | 127184202 | 153 | -21.03 |
| ADediting_1440728 | chr9_127184202_+ | ENSG00000136828.19 | ENST00000394022.7 | RALGPS1-207 | hsa-miR-6811-5p | chr9 | 127184197 | 127184203 | 7mer-m8 | 127184184 | 127184204 | 154 | -19.4 |
| ADediting_1440729 | chr9_127184218_+ | ENSG00000136828.19 | ENST00000394022.7 | RALGPS1-207 | hsa-miR-151a-5p | chr9 | 127184211 | 127184217 | 7mer-m8 | 127184198 | 127184218 | 150 | -20.02 |
| ADediting_1440729 | chr9_127184218_+ | ENSG00000136828.19 | ENST00000394022.7 | RALGPS1-207 | hsa-miR-151b | chr9 | 127184211 | 127184217 | 7mer-m8 | 127184201 | 127184218 | 150 | -19.23 |
| ADediting_1440730 | chr9_127184259_+ | ENSG00000136828.19 | ENST00000394022.7 | RALGPS1-207 | hsa-miR-1184 | chr9 | 127184255 | 127184261 | 7mer-m8 | 127184240 | 127184262 | 141 | -17.6 |
| ADediting_1440730 | chr9_127184259_+ | ENSG00000136828.19 | ENST00000394022.7 | RALGPS1-207 | hsa-miR-4418 | chr9 | 127184256 | 127184262 | 7mer-m8 | 127184247 | 127184263 | 143 | -21.08 |
| ADediting_1440730 | chr9_127184259_+ | ENSG00000136828.19 | ENST00000394022.7 | RALGPS1-207 | hsa-miR-509-3-5p | chr9 | 127184256 | 127184262 | 7mer-m8 | 127184242 | 127184263 | 142 | -18.48 |
| ADediting_1440730 | chr9_127184259_+ | ENSG00000136828.19 | ENST00000394022.7 | RALGPS1-207 | hsa-miR-509-5p | chr9 | 127184256 | 127184262 | 7mer-m8 | 127184243 | 127184263 | 142 | -14.87 |
| ADediting_1440730 | chr9_127184259_+ | ENSG00000136828.19 | ENST00000394022.7 | RALGPS1-207 | hsa-miR-7156-3p | chr9 | 127184254 | 127184260 | 7mer-m8 | 127184239 | 127184261 | 144 | -25.51 |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1440728 | chr9_127184202_+ | ENSG00000136828.19 | ENST00000394022.7 | RALGPS1-207 | hsa-miR-4423-3p | chr9 | 127184195 | 127184201 | 7mer-m8 | 127184182 | 127184202 | 145 | -13.76 |
| ADediting_1440729 | chr9_127184218_+ | ENSG00000136828.19 | ENST00000394022.7 | RALGPS1-207 | hsa-miR-125a-5p | chr9 | 127184214 | 127184220 | 7mer-m8 | 127184198 | 127184221 | 141 | -18.53 |
| ADediting_1440729 | chr9_127184218_+ | ENSG00000136828.19 | ENST00000394022.7 | RALGPS1-207 | hsa-miR-125b-5p | chr9 | 127184214 | 127184220 | 7mer-m8 | 127184200 | 127184221 | 141 | -16.84 |
| ADediting_1440729 | chr9_127184218_+ | ENSG00000136828.19 | ENST00000394022.7 | RALGPS1-207 | hsa-miR-4319 | chr9 | 127184214 | 127184220 | 7mer-m8 | 127184205 | 127184221 | 142 | -15.83 |
| ADediting_1440729 | chr9_127184218_+ | ENSG00000136828.19 | ENST00000394022.7 | RALGPS1-207 | hsa-miR-4689 | chr9 | 127184211 | 127184217 | 7mer-m8 | 127184196 | 127184218 | 147 | -25.12 |
| ADediting_1440729 | chr9_127184218_+ | ENSG00000136828.19 | ENST00000394022.7 | RALGPS1-207 | hsa-miR-544b | chr9 | 127184213 | 127184219 | 7mer-m8 | 127184199 | 127184220 | 141 | -15.51 |
| ADediting_1440729 | chr9_127184218_+ | ENSG00000136828.19 | ENST00000394022.7 | RALGPS1-207 | hsa-miR-6779-3p | chr9 | 127184216 | 127184222 | 7mer-m8 | 127184203 | 127184223 | 140 | -15.11 |
| ADediting_1440729 | chr9_127184218_+ | ENSG00000136828.19 | ENST00000394022.7 | RALGPS1-207 | hsa-miR-7976 | chr9 | 127184215 | 127184221 | 7mer-m8 | 127184204 | 127184222 | 145 | -16.87 |
| ADediting_1440730 | chr9_127184259_+ | ENSG00000136828.19 | ENST00000394022.7 | RALGPS1-207 | hsa-miR-1183 | chr9 | 127184256 | 127184262 | 7mer-m8 | 127184237 | 127184263 | 140 | -21.07 |
| ADediting_1440730 | chr9_127184259_+ | ENSG00000136828.19 | ENST00000394022.7 | RALGPS1-207 | hsa-miR-3137 | chr9 | 127184255 | 127184261 | 7mer-m8 | 127184239 | 127184262 | 150 | -25.33 |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000136828.19 | ENST00000259351.10 | RALGPS1-201 | hsa-miR-5688 | chr9 | 127220893 | 127220899 | 7mer-m8 | 127220881 | 127220900 | 145 | -11.1 |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000136828.19 | ENST00000438723.1 | RALGPS1-209 | hsa-miR-5688 | chr9 | 127220893 | 127220899 | 7mer-m8 | 127220881 | 127220900 | 145 | -11.1 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000136828.19 | ENST00000259351.10 | RALGPS1-201 | hsa-miR-589-3p | chr9 | 127220552 | 127220558 | 7mer-m8 | 127220539 | 127220559 | 146 | -21.9 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000136828.19 | ENST00000259351.10 | RALGPS1-201 | hsa-miR-589-3p | chr9 | 127221869 | 127221875 | 7mer-m8 | 127221853 | 127221876 | 162 | -17.26 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000136828.19 | ENST00000394011.7 | RALGPS1-206 | hsa-miR-589-3p | chr9 | 126990035 | 126990042 | 8mer-1a | 126990018 | 126990042 | 149 | -27.24 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000136828.19 | ENST00000438723.1 | RALGPS1-209 | hsa-miR-589-3p | chr9 | 127220552 | 127220558 | 7mer-m8 | 127220539 | 127220559 | 146 | -21.9 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000136828.19 | ENST00000438723.1 | RALGPS1-209 | hsa-miR-589-3p | chr9 | 127221869 | 127221875 | 7mer-m8 | 127221853 | 127221876 | 162 | -17.26 |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000136828.19 | ENST00000259351.10 | RALGPS1-201 | hsa-miR-381-3p | chr9 | 127221348 | 127221354 | 7mer-m8 | 127221335 | 127221355 | 154 | -17.3 |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000136828.19 | ENST00000438723.1 | RALGPS1-209 | hsa-miR-381-3p | chr9 | 127221348 | 127221354 | 7mer-m8 | 127221335 | 127221355 | 154 | -17.3 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000136828.19 | ENST00000373434.5 | RALGPS1-203 | hsa-miR-641 | chr9 | 127217493 | 127217500 | 8mer-1a | 127217480 | 127217500 | 144 | -15.83 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000136828.19 | ENST00000259351.10 | RALGPS1-201 | hsa-miR-4775 | chr9 | 127222839 | 127222845 | 7mer-m8 | 127222821 | 127222846 | 152 | -14.67 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000136828.19 | ENST00000438723.1 | RALGPS1-209 | hsa-miR-4775 | chr9 | 127222839 | 127222845 | 7mer-m8 | 127222821 | 127222846 | 152 | -14.67 |
| ADediting_98288 | chr1_32086990_+ | ENSG00000136828.19 | ENST00000373436.5 | RALGPS1-204 | hsa-miR-5585-3p | chr9 | 127178359 | 127178365 | 7mer-m8 | 127178344 | 127178366 | 151 | -23 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000136828.19 | ENST00000259351.10 | RALGPS1-201 | hsa-miR-5585-3p | chr9 | 127222081 | 127222087 | 7mer-m8 | 127222067 | 127222088 | 152 | -14.75 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000136828.19 | ENST00000438723.1 | RALGPS1-209 | hsa-miR-5585-3p | chr9 | 127222081 | 127222087 | 7mer-m8 | 127222067 | 127222088 | 152 | -14.75 |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1337757 | chr7_5495852_- | ENSG00000136828.19 | ENST00000373434.5 | RALGPS1-203 | hsa-miR-589-3p | chr9 | 127217477 | 127217483 | 7mer-m8 | 127217460 | 127217484 | 145 | -11.29 |
| ADediting_1337758 | chr7_5495892_- | ENSG00000136828.19 | ENST00000259351.10 | RALGPS1-201 | hsa-miR-589-5p | chr9 | 127219077 | 127219084 | 8mer-1a | 127219061 | 127219084 | 152 | -22.01 |
| ADediting_1337758 | chr7_5495892_- | ENSG00000136828.19 | ENST00000438723.1 | RALGPS1-209 | hsa-miR-589-5p | chr9 | 127219077 | 127219084 | 8mer-1a | 127219061 | 127219084 | 152 | -22.01 |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000136828.19 | ENST00000259351.10 | RALGPS1-201 | hsa-miR-381-3p | chr9 | 127223046 | 127223052 | 7mer-m8 | 127223032 | 127223053 | 144 | -8.65 |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000136828.19 | ENST00000438723.1 | RALGPS1-209 | hsa-miR-381-3p | chr9 | 127223046 | 127223052 | 7mer-m8 | 127223032 | 127223053 | 144 | -8.65 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000136828.19 | ENST00000259351.10 | RALGPS1-201 | hsa-miR-381-3p | chr9 | 127223046 | 127223052 | 7mer-m8 | 127223032 | 127223053 | 144 | -8.65 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000136828.19 | ENST00000438723.1 | RALGPS1-209 | hsa-miR-381-3p | chr9 | 127223046 | 127223052 | 7mer-m8 | 127223032 | 127223053 | 144 | -8.65 |
| ADediting_1643790 | chr3_121049689_+ | ENSG00000136828.19 | ENST00000259351.10 | RALGPS1-201 | hsa-miR-5682 | chr9 | 127219495 | 127219501 | 7mer-m8 | 127219482 | 127219502 | 154 | -20.27 |
| ADediting_1643790 | chr3_121049689_+ | ENSG00000136828.19 | ENST00000438723.1 | RALGPS1-209 | hsa-miR-5682 | chr9 | 127219495 | 127219501 | 7mer-m8 | 127219482 | 127219502 | 154 | -20.27 |
| ADediting_496066 | chr15_66496985_- | ENSG00000136828.19 | ENST00000259351.10 | RALGPS1-201 | hsa-miR-4512 | chr9 | 127219348 | 127219354 | 7mer-m8 | 127219334 | 127219355 | 150 | -22.7 |
| ADediting_496066 | chr15_66496985_- | ENSG00000136828.19 | ENST00000259351.10 | RALGPS1-201 | hsa-miR-4512 | chr9 | 127219630 | 127219636 | 7mer-m8 | 127219616 | 127219637 | 150 | -22.83 |
| ADediting_496066 | chr15_66496985_- | ENSG00000136828.19 | ENST00000438723.1 | RALGPS1-209 | hsa-miR-4512 | chr9 | 127219348 | 127219354 | 7mer-m8 | 127219334 | 127219355 | 150 | -22.7 |
| ADediting_496066 | chr15_66496985_- | ENSG00000136828.19 | ENST00000438723.1 | RALGPS1-209 | hsa-miR-4512 | chr9 | 127219630 | 127219636 | 7mer-m8 | 127219616 | 127219637 | 150 | -22.83 |
| ADediting_98288 | chr1_32086990_+ | ENSG00000136828.19 | ENST00000259351.10 | RALGPS1-201 | hsa-miR-5585-3p | chr9 | 127219499 | 127219505 | 7mer-m8 | 127219482 | 127219506 | 148 | -17.74 |
| ADediting_98288 | chr1_32086990_+ | ENSG00000136828.19 | ENST00000259351.10 | RALGPS1-201 | hsa-miR-5585-3p | chr9 | 127220597 | 127220604 | 8mer-1a | 127220580 | 127220604 | 144 | -15.71 |
| ADediting_98288 | chr1_32086990_+ | ENSG00000136828.19 | ENST00000259351.10 | RALGPS1-201 | hsa-miR-5585-3p | chr9 | 127222692 | 127222698 | 7mer-m8 | 127222676 | 127222699 | 146 | -16.42 |
| ADediting_98288 | chr1_32086990_+ | ENSG00000136828.19 | ENST00000373434.5 | RALGPS1-203 | hsa-miR-5585-3p | chr9 | 127217437 | 127217443 | 7mer-m8 | 127217423 | 127217444 | 147 | -8.29 |
| ADediting_98288 | chr1_32086990_+ | ENSG00000136828.19 | ENST00000424082.6 | RALGPS1-208 | hsa-miR-5585-3p | chr9 | 127217437 | 127217443 | 7mer-m8 | 127217423 | 127217444 | 147 | -8.29 |
| ADediting_98288 | chr1_32086990_+ | ENSG00000136828.19 | ENST00000438723.1 | RALGPS1-209 | hsa-miR-5585-3p | chr9 | 127219499 | 127219505 | 7mer-m8 | 127219482 | 127219506 | 148 | -17.74 |
| ADediting_98288 | chr1_32086990_+ | ENSG00000136828.19 | ENST00000438723.1 | RALGPS1-209 | hsa-miR-5585-3p | chr9 | 127220597 | 127220604 | 8mer-1a | 127220580 | 127220604 | 144 | -15.71 |
| ADediting_98288 | chr1_32086990_+ | ENSG00000136828.19 | ENST00000438723.1 | RALGPS1-209 | hsa-miR-5585-3p | chr9 | 127222692 | 127222698 | 7mer-m8 | 127222676 | 127222699 | 146 | -16.42 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000136828.19 | ENST00000259351.10 | RALGPS1-201 | hsa-miR-5585-3p | chr9 | 127219499 | 127219505 | 7mer-m8 | 127219482 | 127219506 | 148 | -17.74 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000136828.19 | ENST00000259351.10 | RALGPS1-201 | hsa-miR-5585-3p | chr9 | 127220597 | 127220604 | 8mer-1a | 127220580 | 127220604 | 144 | -15.71 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000136828.19 | ENST00000259351.10 | RALGPS1-201 | hsa-miR-5585-3p | chr9 | 127222692 | 127222698 | 7mer-m8 | 127222676 | 127222699 | 146 | -16.42 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000136828.19 | ENST00000373434.5 | RALGPS1-203 | hsa-miR-5585-3p | chr9 | 127217437 | 127217443 | 7mer-m8 | 127217423 | 127217444 | 147 | -8.29 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000136828.19 | ENST00000424082.6 | RALGPS1-208 | hsa-miR-5585-3p | chr9 | 127217437 | 127217443 | 7mer-m8 | 127217423 | 127217444 | 147 | -8.29 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000136828.19 | ENST00000438723.1 | RALGPS1-209 | hsa-miR-5585-3p | chr9 | 127219499 | 127219505 | 7mer-m8 | 127219482 | 127219506 | 148 | -17.74 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000136828.19 | ENST00000438723.1 | RALGPS1-209 | hsa-miR-5585-3p | chr9 | 127220597 | 127220604 | 8mer-1a | 127220580 | 127220604 | 144 | -15.71 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000136828.19 | ENST00000438723.1 | RALGPS1-209 | hsa-miR-5585-3p | chr9 | 127222692 | 127222698 | 7mer-m8 | 127222676 | 127222699 | 146 | -16.42 |
| Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for RALGPS1 |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000394022.7 | protein_coding |  |  |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_1440723 | ENST00000394022.7 | chr9_127183894_+ | 1230 | -578.30 | -577.90 | -594.60 |
| ADediting_1440724 | ENST00000394022.7 | chr9_127183895_+ | 1231 | -578.20 | -577.90 | -594.60 |
| ADediting_1440725 | ENST00000394022.7 | chr9_127183913_+ | 1249 | -581.70 | -577.90 | -594.60 |
| ADediting_1440726 | ENST00000394022.7 | chr9_127183914_+ | 1250 | -577.60 | -577.90 | -594.60 |
| ADediting_1440727 | ENST00000394022.7 | chr9_127184088_+ | 1424 | -578.20 | -577.90 | -594.60 |
| ADediting_1440728 | ENST00000394022.7 | chr9_127184202_+ | 1538 | -578.20 | -577.90 | -594.60 |
| ADediting_1440729 | ENST00000394022.7 | chr9_127184218_+ | 1554 | -579.80 | -577.90 | -594.60 |
| ADediting_1440730 | ENST00000394022.7 | chr9_127184259_+ | 1595 | -578.90 | -577.90 | -594.60 |
| ADediting_1440731 | ENST00000394022.7 | chr9_127184272_+ | 1608 | -579.80 | -577.90 | -594.60 |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for RALGPS1 |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | ADediting_1440615 | chr9_126925401_+ | 0.736866452479399 | -0.0191594978795401 | 0.131652369064805 | -0.085815584161457 | 8.06367494943491e-10 | 0.339868426541856 |
| DLPFC | ADediting_1440691 | chr9_127181826_+ | 0.39054974527756 | 0.0489348484173715 | 0.340757151363743 | -0.054287433896691 | 5.65572420434301e-15 | 0.424240654302741 |
| DLPFC | ADediting_1440692 | chr9_127181843_+ | 0.475341529214845 | 0.0406895553584145 | 0.136692376740968 | -0.0847155425794771 | 2.19903181363298e-21 | 0.504098361947097 |
| DLPFC | ADediting_1440693 | chr9_127181905_+ | 0.436790458842594 | 0.0443234453796191 | 0.188557692577043 | -0.0748765171961612 | 6.12792958874452e-20 | 0.487833936436314 |
| DLPFC | ADediting_1440703 | chr9_127181972_+ | 0.243017204281788 | 0.066503548465982 | 0.64451566386197 | -0.0263071799643627 | 1.33606214985646e-12 | 0.388366080464253 |
| DLPFC | ADediting_1440704 | chr9_127181973_+ | 0.554443353781757 | 0.0336996783197077 | 0.367753658397877 | -0.0513293302189016 | 5.82503607221283e-12 | 0.377909900593207 |
| DLPFC | ADediting_1440706 | chr9_127182004_+ | 0.142599617295941 | 0.0834651675047167 | 0.907790677668651 | -0.00660506914777292 | 6.27331244814124e-08 | 0.301358288024757 |
| DLPFC | ADediting_1440708 | chr9_127182010_+ | 0.33824923678727 | 0.0545696548147265 | 0.867251730030798 | -0.00953179383907115 | 7.26740459715794e-11 | 0.359066924610019 |
| DLPFC | ADediting_1440710 | chr9_127182083_+ | 0.809542616552191 | 0.0137436707547854 | 0.219355379060691 | -0.0699566858753831 | 2.7302944992788e-10 | 0.3486688450218 |
| DLPFC | ADediting_1440722 | chr9_127183812_+ | 0.0517996331282317 | 0.110564724442135 | 0.918216197934681 | 0.00585549053344179 | 4.35633944910179e-13 | 0.396083041728676 |
| DLPFC | ADediting_1440724 | chr9_127183895_+ | 0.102795154790981 | 0.0928350287395398 | 0.916586738098202 | -0.00597257651629103 | 9.36722960689988e-15 | 0.421102630871546 |
| DLPFC | ADediting_1440726 | chr9_127183914_+ | 0.132907309906685 | 0.0855386871901091 | 0.931084378026998 | -0.00493166082831843 | 1.09200521320792e-12 | 0.389769992982797 |
| DLPFC | ADediting_1440728 | chr9_127184202_+ | 0.0734001381290648 | 0.101831066749576 | 0.819770541937952 | -0.0129923886766008 | 9.68532701822691e-11 | 0.356842522370524 |
| DLPFC | ADediting_1440765 | chr9_127190427_+ | 0.92585071195317 | 0.00530722606824937 | 0.38384258074858 | -0.0496302853620025 | 2.96347439062184e-09 | 0.328912354132524 |
| CER | ADediting_1440774 | chr9_127203815_+ | 3.82558200012993e-05 | 0.329531150778878 | 3.50998641857924e-06 | 0.368404044433288 | 0.983184624576287 | -0.00173540591839248 |
| CER | ADediting_1440776 | chr9_127203880_+ | 0.00276235901033855 | 0.242743414648166 | 6.59214261387679e-05 | 0.31989865530087 | 0.578519652184364 | 0.0457190639191783 |
| CER | ADediting_1440779 | chr9_127205235_+ | 0.000205680162842385 | 0.298630740920337 | 2.41254980712908e-05 | 0.337446823626969 | 0.504810387038884 | 0.0548734239896125 |
| CER | ADediting_1592204 | chr9_127203890_+ | 0.000355795565360341 | 0.287775315088271 | 8.64955097240308e-05 | 0.31496583014949 | 0.20824696617985 | 0.103337119059762 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 7.01197399609375e-79 | 0.82660051949561 | 4.03976349355764e-98 | 0.873134427319817 | 0.00267154980482377 | 0.17001376833166 |
| AC | 1.68572933782118e-61 | 0.818008896138291 | 5.45567163045009e-52 | 0.778068722585012 | 7.53552791033494e-15 | 0.465514356586349 |
| PCC | 2.23033879584335e-50 | 0.8325915497986 | 1.08121184903192e-51 | 0.838365992723206 | 0.000256723584464537 | 0.261595920565562 |
| CER | 1.33312437106704e-54 | 0.897891333556508 | 3.49665151545442e-26 | 0.729434402736296 | 0.118582428103551 | 0.127980810748848 |
| TCX | 6.36424651374975e-40 | 0.833258908026356 | 4.16495373784355e-14 | 0.566488623060639 | 8.59385444255732e-07 | 0.389130954289034 |
| FP | 2.47176367497435e-40 | 0.796657013755217 | 1.57653598742799e-31 | 0.735134471812258 | 3.49725331607224e-10 | 0.44828786292701 |
| IFG | 1.46196016410938e-05 | 0.751973273571952 | 1.71709228279301e-05 | 0.748010796800615 | 0.0011087318862107 | 0.613495393573477 |
| PG | 1.76910771681805e-60 | 0.877024574528522 | 2.8505241989852e-36 | 0.759986913464476 | 0.183713529408335 | 0.0979025482385238 |
| STG | 3.53026306109228e-15 | 0.729536417214292 | 6.63116167057096e-11 | 0.638102201365366 | 0.000112836785730802 | 0.408847476904814 |
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Relation with AD stages for RALGPS1 |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
| TCX | 5.58065493816168e-06 | 0.425059723270395 |
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RelatedDrugs for RALGPS1 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RALGPS1 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
| RALGPS1 | C0005684 | Malignant neoplasm of urinary bladder | 1 | CTD_human |
| RALGPS1 | C0005695 | Bladder Neoplasm | 1 | CTD_human |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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