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![]() | Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for RAB36 |
Gene summary |
| Gene information | Gene symbol | RAB36 | Gene ID | 9609 |
| Gene name | RAB36, member RAS oncogene family | |
| Synonyms | - | |
| Cytomap | 22q11.23 | |
| Type of gene | protein-coding | |
| Description | ras-related protein Rab-36small GTP-binding protein Rab36 | |
| Modification date | 20200313 | |
| UniProtAcc | O95755, | |
| Context |
Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for RAB36 |
RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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RNA editing frequencies across three data sets. |
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The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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RNA A-to-I editing events in AD. |
| ADediting_973234(23153788, +), ADediting_973235(23155064, +), ADediting_973236(23162976, +), ADediting_973237(23163011, +), ADediting_973238(23163012, +), ADediting_973239(23163029, +), ADediting_973240(23163158, +), ADediting_973241(23163173, +), ADediting_973242(23163286, +), ADediting_973243(23163329, +), ADediting_973244(23163369, +), ADediting_973245(23163395, +), ADediting_973246(23163396, +), ADediting_973247(23163405, +), ADediting_973248(23163411, +), ADediting_973249(23163414, +), ADediting_973250(23163420, +), ADediting_973251(23163435, +), ADediting_973252(23163489, +), ADediting_973253(23163490, +), ADediting_973254(23163502, +), ADediting_973255(23163651, +), ADediting_973256(23163671, +), ADediting_1569888(23162992, +), |
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RNA editing positional annotations for RAB36 using Annovar |
Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_973234 | chr22_23153788_+ | intronic |
| ADediting_973235 | chr22_23155064_+ | intronic |
| ADediting_973236 | chr22_23162976_+ | UTR3 |
| ADediting_973237 | chr22_23163011_+ | UTR3 |
| ADediting_973238 | chr22_23163012_+ | UTR3 |
| ADediting_973239 | chr22_23163029_+ | UTR3 |
| ADediting_973240 | chr22_23163158_+ | UTR3 |
| ADediting_973241 | chr22_23163173_+ | UTR3 |
| ADediting_973242 | chr22_23163286_+ | UTR3 |
| ADediting_973243 | chr22_23163329_+ | UTR3 |
| ADediting_973244 | chr22_23163369_+ | UTR3 |
| ADediting_973245 | chr22_23163395_+ | UTR3 |
| ADediting_973246 | chr22_23163396_+ | UTR3 |
| ADediting_973247 | chr22_23163405_+ | UTR3 |
| ADediting_973248 | chr22_23163411_+ | UTR3 |
| ADediting_973249 | chr22_23163414_+ | UTR3 |
| ADediting_973250 | chr22_23163420_+ | UTR3 |
| ADediting_973251 | chr22_23163435_+ | UTR3 |
| ADediting_973252 | chr22_23163489_+ | UTR3 |
| ADediting_973253 | chr22_23163490_+ | UTR3 |
| ADediting_973254 | chr22_23163502_+ | UTR3 |
| ADediting_973255 | chr22_23163651_+ | UTR3 |
| ADediting_973256 | chr22_23163671_+ | UTR3 |
| ADediting_1569888 | chr22_23162992_+ | UTR3 |
Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_973234 | chr22_23153788_+ | SINE | Alu | Name=AluSz |
| ADediting_973235 | chr22_23155064_+ | SINE | Alu | Name=AluSp |
| ADediting_973236 | chr22_23162976_+ | SINE | Alu | Name=AluSp |
| ADediting_973237 | chr22_23163011_+ | SINE | Alu | Name=AluSp |
| ADediting_973238 | chr22_23163012_+ | SINE | Alu | Name=AluSp |
| ADediting_973239 | chr22_23163029_+ | SINE | Alu | Name=AluSp |
| ADediting_973240 | chr22_23163158_+ | SINE | Alu | Name=AluSp |
| ADediting_973241 | chr22_23163173_+ | SINE | Alu | Name=AluSp |
| ADediting_973242 | chr22_23163286_+ | SINE | Alu | Name=AluYm1 |
| ADediting_973243 | chr22_23163329_+ | SINE | Alu | Name=AluYm1 |
| ADediting_973244 | chr22_23163369_+ | SINE | Alu | Name=AluYm1 |
| ADediting_973245 | chr22_23163395_+ | SINE | Alu | Name=AluYm1 |
| ADediting_973246 | chr22_23163396_+ | SINE | Alu | Name=AluYm1 |
| ADediting_973247 | chr22_23163405_+ | SINE | Alu | Name=AluYm1 |
| ADediting_973248 | chr22_23163411_+ | SINE | Alu | Name=AluYm1 |
| ADediting_973249 | chr22_23163414_+ | SINE | Alu | Name=AluYm1 |
| ADediting_973250 | chr22_23163420_+ | SINE | Alu | Name=AluYm1 |
| ADediting_973251 | chr22_23163435_+ | SINE | Alu | Name=AluYm1 |
| ADediting_973252 | chr22_23163489_+ | SINE | Alu | Name=AluYm1 |
| ADediting_973253 | chr22_23163490_+ | SINE | Alu | Name=AluYm1 |
| ADediting_973254 | chr22_23163502_+ | SINE | Alu | Name=AluYm1 |
| ADediting_1569888 | chr22_23162992_+ | SINE | Alu | Name=AluSp |
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RNA A-to-I editing events in the alternative splicing sites for RAB36 |
RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RAB36 |
Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.* The grey color means N/A. |
Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.* Click on the image to enlarge it in a new window. |
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- Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.* Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
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Protein coding region RNA A-to-I editings for RAB36 |
- Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for RAB36 |
RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. |
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RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1569888 | chr22_23162992_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-4793-3p | chr22 | 23162985 | 23162991 | 7mer-m8 | 23162972 | 23162992 | 150 | -19.18 |
| ADediting_1569888 | chr22_23162992_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-485-5p | chr22 | 23162989 | 23162995 | 7mer-m8 | 23162973 | 23162996 | 150 | -23.28 |
| ADediting_1569888 | chr22_23162992_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-6884-5p | chr22 | 23162989 | 23162995 | 7mer-m8 | 23162973 | 23162996 | 143 | -22.16 |
| ADediting_973239 | chr22_23163029_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-6089 | chr22 | 23163027 | 23163033 | 7mer-m8 | 23163011 | 23163034 | 164 | -39.99 |
| ADediting_973240 | chr22_23163158_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-7112-5p | chr22 | 23163151 | 23163157 | 7mer-m8 | 23163137 | 23163158 | 152 | -26.12 |
| ADediting_973242 | chr22_23163286_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-324-3p | chr22 | 23163282 | 23163288 | 7mer-m8 | 23163267 | 23163289 | 148 | -24.16 |
| ADediting_973242 | chr22_23163286_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-4252 | chr22 | 23163283 | 23163290 | 8mer-1a | 23163270 | 23163290 | 153 | -25.27 |
| ADediting_973244 | chr22_23163369_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-17-3p | chr22 | 23163365 | 23163371 | 7mer-m8 | 23163350 | 23163372 | 154 | -20.36 |
| ADediting_973245 | chr22_23163395_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-34a-3p | chr22 | 23163391 | 23163397 | 7mer-m8 | 23163376 | 23163398 | 141 | -10.52 |
| ADediting_973246 | chr22_23163396_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-548ae-3p | chr22 | 23163394 | 23163400 | 7mer-m8 | 23163381 | 23163401 | 141 | -7.19 |
| ADediting_973246 | chr22_23163396_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-548ah-3p | chr22 | 23163394 | 23163400 | 7mer-m8 | 23163380 | 23163401 | 141 | -8.14 |
| ADediting_973246 | chr22_23163396_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-548aj-3p | chr22 | 23163394 | 23163400 | 7mer-m8 | 23163381 | 23163401 | 141 | -8.09 |
| ADediting_973246 | chr22_23163396_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-548am-3p | chr22 | 23163394 | 23163400 | 7mer-m8 | 23163380 | 23163401 | 141 | -7.41 |
| ADediting_973246 | chr22_23163396_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-548aq-3p | chr22 | 23163394 | 23163400 | 7mer-m8 | 23163380 | 23163401 | 141 | -7.57 |
| ADediting_973246 | chr22_23163396_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-548j-3p | chr22 | 23163394 | 23163400 | 7mer-m8 | 23163381 | 23163401 | 141 | -7.19 |
| ADediting_973246 | chr22_23163396_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-548x-3p | chr22 | 23163394 | 23163400 | 7mer-m8 | 23163382 | 23163401 | 141 | -7.13 |
| ADediting_973246 | chr22_23163396_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-7844-5p | chr22 | 23163392 | 23163398 | 7mer-m8 | 23163378 | 23163399 | 163 | -17.29 |
| ADediting_973247 | chr22_23163405_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-4803 | chr22 | 23163400 | 23163406 | 7mer-m8 | 23163387 | 23163407 | 148 | -11.7 |
| ADediting_973250 | chr22_23163420_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-3183 | chr22 | 23163413 | 23163419 | 7mer-m8 | 23163399 | 23163420 | 140 | -13.24 |
| ADediting_973250 | chr22_23163420_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-4723-3p | chr22 | 23163413 | 23163419 | 7mer-m8 | 23163400 | 23163420 | 142 | -17.74 |
| ADediting_973250 | chr22_23163420_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-6769b-3p | chr22 | 23163413 | 23163419 | 7mer-m8 | 23163400 | 23163420 | 142 | -17.49 |
| ADediting_973250 | chr22_23163420_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-6771-3p | chr22 | 23163418 | 23163424 | 7mer-m8 | 23163405 | 23163425 | 167 | -21.81 |
| ADediting_973250 | chr22_23163420_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-6892-3p | chr22 | 23163414 | 23163420 | 7mer-m8 | 23163401 | 23163421 | 140 | -15.45 |
| ADediting_973251 | chr22_23163435_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-3190-5p | chr22 | 23163433 | 23163439 | 7mer-m8 | 23163422 | 23163440 | 152 | -22.63 |
| ADediting_973251 | chr22_23163435_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-548s | chr22 | 23163432 | 23163438 | 7mer-m8 | 23163415 | 23163439 | 152 | -13.31 |
| ADediting_973252 | chr22_23163489_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-3192-5p | chr22 | 23163482 | 23163489 | 8mer-1a | 23163467 | 23163489 | 158 | -30.9 |
| ADediting_973252 | chr22_23163489_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-326 | chr22 | 23163484 | 23163490 | 7mer-m8 | 23163472 | 23163491 | 140 | -15.12 |
| ADediting_973252 | chr22_23163489_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-330-5p | chr22 | 23163484 | 23163490 | 7mer-m8 | 23163470 | 23163491 | 140 | -21.22 |
| ADediting_973252 | chr22_23163489_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-4314 | chr22 | 23163483 | 23163489 | 7mer-m8 | 23163473 | 23163490 | 140 | -21.17 |
| ADediting_973252 | chr22_23163489_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-514a-5p | chr22 | 23163485 | 23163491 | 7mer-m8 | 23163469 | 23163492 | 146 | -20.07 |
| ADediting_973253 | chr22_23163490_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-3189-3p | chr22 | 23163484 | 23163490 | 7mer-m8 | 23163469 | 23163491 | 149 | -25.05 |
| ADediting_973253 | chr22_23163490_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-6813-3p | chr22 | 23163485 | 23163491 | 7mer-m8 | 23163472 | 23163492 | 140 | -12.55 |
| ADediting_973256 | chr22_23163671_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-136-5p | chr22 | 23163664 | 23163670 | 7mer-m8 | 23163649 | 23163671 | 149 | -11.84 |
RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1569888 | chr22_23162992_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-6086 | chr22 | 23162989 | 23162995 | 7mer-m8 | 23162977 | 23162996 | 150 | -21.69 |
| ADediting_973237 | chr22_23163011_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-10392-5p | chr22 | 23163009 | 23163015 | 7mer-1a | 23162993 | 23163015 | 145 | -24.79 |
| ADediting_973237 | chr22_23163011_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-676-5p | chr22 | 23163006 | 23163012 | 7mer-m8 | 23162994 | 23163013 | 153 | -17.71 |
| ADediting_973238 | chr22_23163012_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-10392-5p | chr22 | 23163009 | 23163015 | 7mer-1a | 23162993 | 23163015 | 145 | -24.79 |
| ADediting_973238 | chr22_23163012_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-676-5p | chr22 | 23163006 | 23163012 | 7mer-m8 | 23162994 | 23163013 | 153 | -17.71 |
| ADediting_973239 | chr22_23163029_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-4478 | chr22 | 23163026 | 23163032 | 7mer-m8 | 23163018 | 23163033 | 149 | -25.05 |
| ADediting_973239 | chr22_23163029_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-4649-3p | chr22 | 23163023 | 23163029 | 7mer-m8 | 23163010 | 23163030 | 140 | -14.11 |
| ADediting_973239 | chr22_23163029_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-7160-5p | chr22 | 23163024 | 23163030 | 7mer-m8 | 23163011 | 23163031 | 146 | -20.4 |
| ADediting_973240 | chr22_23163158_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-541-3p | chr22 | 23163153 | 23163159 | 7mer-m8 | 23163139 | 23163160 | 155 | -24.39 |
| ADediting_973240 | chr22_23163158_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-6134 | chr22 | 23163155 | 23163161 | 7mer-m8 | 23163143 | 23163162 | 147 | -21.65 |
| ADediting_973240 | chr22_23163158_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-654-5p | chr22 | 23163153 | 23163159 | 7mer-m8 | 23163139 | 23163160 | 142 | -19.59 |
| ADediting_973242 | chr22_23163286_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-25-3p | chr22 | 23163280 | 23163286 | 7mer-m8 | 23163264 | 23163287 | 153 | -22.8 |
| ADediting_973242 | chr22_23163286_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-32-5p | chr22 | 23163280 | 23163286 | 7mer-m8 | 23163265 | 23163287 | 147 | -12.85 |
| ADediting_973242 | chr22_23163286_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-363-3p | chr22 | 23163280 | 23163286 | 7mer-m8 | 23163266 | 23163287 | 155 | -17.99 |
| ADediting_973242 | chr22_23163286_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-92a-3p | chr22 | 23163280 | 23163286 | 7mer-m8 | 23163270 | 23163287 | 150 | -24.62 |
| ADediting_973242 | chr22_23163286_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-92b-3p | chr22 | 23163280 | 23163286 | 7mer-m8 | 23163265 | 23163287 | 152 | -21.35 |
| ADediting_973244 | chr22_23163369_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-20b-3p | chr22 | 23163365 | 23163371 | 7mer-m8 | 23163350 | 23163372 | 153 | -18.18 |
| ADediting_973249 | chr22_23163414_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-4684-5p | chr22 | 23163411 | 23163417 | 7mer-m8 | 23163397 | 23163418 | 151 | -16.7 |
| ADediting_973250 | chr22_23163420_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-3183 | chr22 | 23163415 | 23163421 | 7mer-m8 | 23163401 | 23163422 | 145 | -16.54 |
| ADediting_973250 | chr22_23163420_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-4723-3p | chr22 | 23163415 | 23163421 | 7mer-m8 | 23163403 | 23163422 | 144 | -13.83 |
| ADediting_973250 | chr22_23163420_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-6769b-3p | chr22 | 23163415 | 23163421 | 7mer-m8 | 23163402 | 23163422 | 147 | -13.58 |
| ADediting_973250 | chr22_23163420_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-6800-3p | chr22 | 23163416 | 23163422 | 7mer-m8 | 23163402 | 23163423 | 142 | -14.29 |
| ADediting_973250 | chr22_23163420_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-6873-3p | chr22 | 23163413 | 23163419 | 7mer-m8 | 23163398 | 23163420 | 142 | -13.28 |
| ADediting_973250 | chr22_23163420_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-7110-3p | chr22 | 23163414 | 23163420 | 7mer-m8 | 23163401 | 23163421 | 143 | -14.81 |
| ADediting_973251 | chr22_23163435_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-4794 | chr22 | 23163433 | 23163439 | 7mer-m8 | 23163418 | 23163440 | 151 | -21.78 |
| ADediting_973251 | chr22_23163435_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-664a-5p | chr22 | 23163433 | 23163439 | 7mer-m8 | 23163417 | 23163440 | 141 | -15.05 |
| ADediting_973252 | chr22_23163489_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-887-5p | chr22 | 23163482 | 23163489 | 8mer-1a | 23163469 | 23163489 | 147 | -13.82 |
| ADediting_973255 | chr22_23163651_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-3692-5p | chr22 | 23163645 | 23163652 | 8mer-1a | 23163622 | 23163652 | 142 | -22.92 |
| ADediting_973255 | chr22_23163651_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-6071 | chr22 | 23163646 | 23163653 | 8mer-1a | 23163635 | 23163653 | 145 | -15.28 |
RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1391023 | chr8_140732605_- | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-151a-3p | chr22 | 23161835 | 23161841 | 7mer-m8 | 23161824 | 23161842 | 143 | -14.1 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-641 | chr22 | 23162187 | 23162193 | 7mer-m8 | 23162171 | 23162194 | 140 | -16.14 |
| ADediting_496066 | chr15_66496985_- | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-4512 | chr22 | 23161762 | 23161768 | 7mer-m8 | 23161749 | 23161769 | 146 | -23.62 |
| ADediting_496066 | chr15_66496985_- | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-4512 | chr22 | 23162670 | 23162676 | 7mer-m8 | 23162654 | 23162677 | 142 | -19.09 |
RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-5688 | chr22 | 23163779 | 23163785 | 7mer-m8 | 23163763 | 23163786 | 154 | -13.56 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-589-3p | chr22 | 23162201 | 23162207 | 7mer-m8 | 23162185 | 23162208 | 140 | -13.13 |
| ADediting_496066 | chr15_66496985_- | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-4512 | chr22 | 23162519 | 23162525 | 7mer-m8 | 23162505 | 23162526 | 145 | -23.02 |
| ADediting_496066 | chr15_66496985_- | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-4512 | chr22 | 23164039 | 23164045 | 7mer-m8 | 23164024 | 23164046 | 154 | -23.09 |
| ADediting_98288 | chr1_32086990_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-5585-3p | chr22 | 23162864 | 23162870 | 7mer-m8 | 23162849 | 23162871 | 143 | -13.35 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000100228.12 | ENST00000263116.6 | RAB36-201 | hsa-miR-5585-3p | chr22 | 23162864 | 23162870 | 7mer-m8 | 23162849 | 23162871 | 143 | -13.35 |
Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for RAB36 |
- RNA A-to-I editing in mRNA.* Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000263116.6 | protein_coding | ![]() | ![]() |
RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_973236 | ENST00000263116.6 | chr22_23162976_+ | 2454 | -1513.40 | -1513.40 | -1551.10 |
| ADediting_1569888 | ENST00000263116.6 | chr22_23162992_+ | 2470 | -1516.90 | -1513.40 | -1551.10 |
| ADediting_973237 | ENST00000263116.6 | chr22_23163011_+ | 2489 | -1512.50 | -1513.40 | -1551.10 |
| ADediting_973238 | ENST00000263116.6 | chr22_23163012_+ | 2490 | -1520.00 | -1513.40 | -1551.10 |
| ADediting_973239 | ENST00000263116.6 | chr22_23163029_+ | 2507 | -1514.20 | -1513.40 | -1551.10 |
| ADediting_973240 | ENST00000263116.6 | chr22_23163158_+ | 2636 | -1516.60 | -1513.40 | -1551.10 |
| ADediting_973241 | ENST00000263116.6 | chr22_23163173_+ | 2651 | -1520.00 | -1513.40 | -1551.10 |
| ADediting_973242 | ENST00000263116.6 | chr22_23163286_+ | 2764 | -1514.10 | -1513.40 | -1551.10 |
| ADediting_973243 | ENST00000263116.6 | chr22_23163329_+ | 2807 | -1516.10 | -1513.40 | -1551.10 |
| ADediting_973244 | ENST00000263116.6 | chr22_23163369_+ | 2847 | -1517.30 | -1513.40 | -1551.10 |
| ADediting_973245 | ENST00000263116.6 | chr22_23163395_+ | 2873 | -1513.60 | -1513.40 | -1551.10 |
| ADediting_973246 | ENST00000263116.6 | chr22_23163396_+ | 2874 | -1512.70 | -1513.40 | -1551.10 |
| ADediting_973247 | ENST00000263116.6 | chr22_23163405_+ | 2883 | -1513.80 | -1513.40 | -1551.10 |
| ADediting_973248 | ENST00000263116.6 | chr22_23163411_+ | 2889 | -1515.70 | -1513.40 | -1551.10 |
| ADediting_973249 | ENST00000263116.6 | chr22_23163414_+ | 2892 | -1513.60 | -1513.40 | -1551.10 |
| ADediting_973250 | ENST00000263116.6 | chr22_23163420_+ | 2898 | -1516.40 | -1513.40 | -1551.10 |
| ADediting_973251 | ENST00000263116.6 | chr22_23163435_+ | 2913 | -1515.60 | -1513.40 | -1551.10 |
| ADediting_973252 | ENST00000263116.6 | chr22_23163489_+ | 2967 | -1516.10 | -1513.40 | -1551.10 |
| ADediting_973253 | ENST00000263116.6 | chr22_23163490_+ | 2968 | -1516.30 | -1513.40 | -1551.10 |
| ADediting_973254 | ENST00000263116.6 | chr22_23163502_+ | 2980 | -1513.70 | -1513.40 | -1551.10 |
| ADediting_973255 | ENST00000263116.6 | chr22_23163651_+ | 3129 | -1512.70 | -1513.40 | -1551.10 |
| ADediting_973256 | ENST00000263116.6 | chr22_23163671_+ | 3149 | -1514.30 | -1513.40 | -1551.10 |
RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for RAB36 |
Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| AC | ADediting_973248 | chr22_23163411_+ | 1.4393912926282e-07 | 0.325222994639233 | 6.34732980902897e-06 | 0.281149493525431 | 0.852052669623732 | 0.011854290220551 |
Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 1.23037148068389e-25 | 0.547443630181971 | 2.93756277236364e-16 | 0.442008442579396 | 1.68178928888233e-32 | 0.606294219649144 |
| AC | 2.16554984090053e-68 | 0.841910511828811 | 5.71472145699378e-36 | 0.684989573199658 | 3.85754547928366e-15 | 0.469962021290078 |
| PCC | 2.61568456938299e-52 | 0.840997581936862 | 1.56180017584493e-35 | 0.748330937929181 | 0.000896963769039435 | 0.238389862233611 |
| CER | 0.0434750698749684 | 0.165108160688273 | 0.143375191229608 | -0.120052688278629 | 0.000157100466747404 | 0.30381487031028 |
| TCX | 3.86655930884419e-17 | 0.61754224619188 | 9.58653791392772e-13 | 0.540318520894307 | 0.398131698018238 | -0.0694887703819055 |
| FP | 3.35092124667945e-19 | 0.605676360532766 | 7.35444424663415e-07 | 0.361094549306258 | 3.72261243967943e-06 | 0.338830083874518 |
| IFG | 8.10956629168805e-05 | 0.705740017911756 | 0.00110265150072127 | 0.613724580063874 | 0.282132900226963 | 0.223823134936295 |
| STG | 1.43278091001334e-11 | 0.654661204986227 | 4.64304665593706e-05 | 0.42911822400278 | 0.131102982473649 | 0.166071234252731 |
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Relation with AD stages for RAB36 |
Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
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RelatedDrugs for RAB36 |
Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RAB36 |
Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |