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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for SOX13 |
 Gene summary |
| Gene information | Gene symbol | SOX13 | Gene ID | 9580 |
| Gene name | SRY-box transcription factor 13 | |
| Synonyms | ICA12|Sox-13 | |
| Cytomap | 1q32.1 | |
| Type of gene | protein-coding | |
| Description | transcription factor SOX-13SRY (sex determining region Y)-box 13SRY-box 13SRY-related HMG-box gene 13islet cell antibody 12islet cell antigen 12type 1 diabetes autoantigen ICA12 | |
| Modification date | 20200313 | |
| UniProtAcc | Q9UN79, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
Top |
RNA A-to-I events for SOX13 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA editing frequencies across three data sets. |
 |
| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA A-to-I editing events in AD. |
| ADediting_57113(204075048, +), ADediting_57114(204075084, +), ADediting_57115(204075085, +), ADediting_57116(204075091, +), ADediting_57117(204075100, +), ADediting_57118(204075124, +), ADediting_57119(204077843, +), ADediting_57120(204077912, +), ADediting_57121(204077997, +), ADediting_57122(204079043, +), ADediting_57123(204079044, +), ADediting_57124(204079052, +), ADediting_57125(204079065, +), ADediting_57126(204079111, +), ADediting_57127(204079135, +), ADediting_57128(204079141, +), ADediting_57129(204079151, +), ADediting_57130(204079177, +), ADediting_57131(204079268, +), ADediting_57132(204079446, +), ADediting_57133(204079485, +), ADediting_57134(204079546, +), ADediting_57135(204079599, +), ADediting_57136(204079621, +), ADediting_57137(204085746, +), ADediting_57138(204085755, +), ADediting_57139(204085763, +), ADediting_57140(204085771, +), ADediting_57141(204085772, +), ADediting_57142(204085774, +), ADediting_57143(204085859, +), ADediting_57144(204085865, +), ADediting_57145(204085882, +), ADediting_57146(204085886, +), ADediting_57147(204085948, +), ADediting_57148(204086397, +), ADediting_57149(204086954, +), ADediting_57150(204086962, +), ADediting_57151(204087185, +), ADediting_57152(204097436, +), ADediting_57153(204097472, +), ADediting_57154(204097544, +), ADediting_57155(204097570, +), ADediting_57156(204097571, +), ADediting_57157(204097580, +), ADediting_57158(204097623, +), ADediting_57159(204097641, +), ADediting_57160(204097922, +), ADediting_57161(204097958, +), ADediting_57162(204097959, +), ADediting_57163(204097976, +), ADediting_57164(204097985, +), ADediting_57165(204097988, +), ADediting_57166(204097998, +), ADediting_57167(204098081, +), ADediting_57168(204098082, +), ADediting_57169(204098083, +), ADediting_57170(204098096, +), ADediting_57171(204098099, +), ADediting_57172(204098122, +), ADediting_57173(204098123, +), ADediting_57174(204098135, +), ADediting_57175(204098222, +), ADediting_57176(204098356, +), ADediting_57177(204098357, +), ADediting_57178(204098366, +), ADediting_57179(204099884, +), ADediting_57180(204118023, +), ADediting_57181(204118032, +), ADediting_57182(204118048, +), ADediting_57183(204118055, +), ADediting_57184(204118103, +), ADediting_57185(204118111, +), ADediting_57186(204118116, +), ADediting_57187(204118122, +), ADediting_57188(204118125, +), ADediting_57189(204118129, +), ADediting_57190(204118131, +), ADediting_57191(204118140, +), ADediting_57192(204118176, +), ADediting_57193(204118189, +), ADediting_57194(204118193, +), ADediting_57195(204118199, +), ADediting_57196(204118208, +), ADediting_57197(204118252, +), ADediting_57198(204118262, +), ADediting_57199(204118375, +), ADediting_57200(204118440, +), ADediting_57201(204118460, +), ADediting_57202(204118461, +), ADediting_57203(204118478, +), ADediting_57204(204118490, +), ADediting_57205(204118518, +), ADediting_57206(204118526, +), ADediting_57207(204118527, +), ADediting_57208(204118535, +), ADediting_57209(204118544, +), ADediting_57210(204118551, +), ADediting_57211(204118552, +), ADediting_57212(204118553, +), ADediting_57213(204118590, +), ADediting_57214(204118594, +), ADediting_57215(204118607, +), ADediting_57216(204118616, +), ADediting_57217(204118617, +), ADediting_57218(204118618, +), ADediting_57219(204118629, +), ADediting_57220(204119731, +), ADediting_57221(204119737, +), ADediting_57222(204119774, +), ADediting_57223(204119775, +), ADediting_57224(204119779, +), ADediting_57225(204119798, +), ADediting_57226(204119806, +), ADediting_57227(204119807, +), ADediting_57228(204119812, +), ADediting_57229(204119867, +), ADediting_57230(204119895, +), ADediting_57231(204119926, +), ADediting_57232(204119947, +), ADediting_57233(204120367, +), ADediting_57234(204121044, +), ADediting_57235(204121060, +), ADediting_57236(204121080, +), ADediting_57237(204121154, +), ADediting_57238(204121234, +), ADediting_57239(204121263, +), ADediting_57240(204121270, +), ADediting_57241(204121320, +), ADediting_57242(204121342, +), ADediting_57243(204121354, +), ADediting_57244(204121355, +), ADediting_57245(204121358, +), ADediting_57246(204121388, +), ADediting_57247(204121404, +), ADediting_1517057(204118067, +), ADediting_1517058(204118072, +), ADediting_1517059(204118136, +), ADediting_1517060(204118137, +), ADediting_1517061(204118395, +), ADediting_1517062(204118421, +), ADediting_1517063(204118508, +), ADediting_1517064(204118513, +), ADediting_1517065(204119726, +), ADediting_1517066(204119793, +), ADediting_1517067(204119891, +), ADediting_1517068(204120179, +), ADediting_1517069(204120238, +), ADediting_1517070(204121000, +), ADediting_1517071(204121079, +), ADediting_1517072(204121097, +), ADediting_1517073(204121137, +), ADediting_1517074(204121145, +), ADediting_1517075(204121146, +), ADediting_1517076(204121160, +), ADediting_1517077(204121249, +), ADediting_1517078(204121261, +), ADediting_1517079(204121341, +), ADediting_1517080(204121372, +), ADediting_1598381(204079087, +), ADediting_1598382(204079132, +), ADediting_1598383(204079183, +), |
Top |
RNA editing positional annotations for SOX13 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_57113 | chr1_204075048_+ | intronic |
| ADediting_57114 | chr1_204075084_+ | intronic |
| ADediting_57115 | chr1_204075085_+ | intronic |
| ADediting_57116 | chr1_204075091_+ | intronic |
| ADediting_57117 | chr1_204075100_+ | intronic |
| ADediting_57118 | chr1_204075124_+ | intronic |
| ADediting_57119 | chr1_204077843_+ | intronic |
| ADediting_57120 | chr1_204077912_+ | intronic |
| ADediting_57121 | chr1_204077997_+ | intronic |
| ADediting_57122 | chr1_204079043_+ | intronic |
| ADediting_57123 | chr1_204079044_+ | intronic |
| ADediting_57124 | chr1_204079052_+ | intronic |
| ADediting_57125 | chr1_204079065_+ | intronic |
| ADediting_57126 | chr1_204079111_+ | intronic |
| ADediting_57127 | chr1_204079135_+ | intronic |
| ADediting_57128 | chr1_204079141_+ | intronic |
| ADediting_57129 | chr1_204079151_+ | intronic |
| ADediting_57130 | chr1_204079177_+ | intronic |
| ADediting_57131 | chr1_204079268_+ | intronic |
| ADediting_57132 | chr1_204079446_+ | intronic |
| ADediting_57133 | chr1_204079485_+ | intronic |
| ADediting_57134 | chr1_204079546_+ | intronic |
| ADediting_57135 | chr1_204079599_+ | intronic |
| ADediting_57136 | chr1_204079621_+ | intronic |
| ADediting_57137 | chr1_204085746_+ | intronic |
| ADediting_57138 | chr1_204085755_+ | intronic |
| ADediting_57139 | chr1_204085763_+ | intronic |
| ADediting_57140 | chr1_204085771_+ | intronic |
| ADediting_57141 | chr1_204085772_+ | intronic |
| ADediting_57142 | chr1_204085774_+ | intronic |
| ADediting_57143 | chr1_204085859_+ | intronic |
| ADediting_57144 | chr1_204085865_+ | intronic |
| ADediting_57145 | chr1_204085882_+ | intronic |
| ADediting_57146 | chr1_204085886_+ | intronic |
| ADediting_57147 | chr1_204085948_+ | intronic |
| ADediting_57148 | chr1_204086397_+ | intronic |
| ADediting_57149 | chr1_204086954_+ | intronic |
| ADediting_57150 | chr1_204086962_+ | intronic |
| ADediting_57151 | chr1_204087185_+ | intronic |
| ADediting_57152 | chr1_204097436_+ | intronic |
| ADediting_57153 | chr1_204097472_+ | intronic |
| ADediting_57154 | chr1_204097544_+ | intronic |
| ADediting_57155 | chr1_204097570_+ | intronic |
| ADediting_57156 | chr1_204097571_+ | intronic |
| ADediting_57157 | chr1_204097580_+ | intronic |
| ADediting_57158 | chr1_204097623_+ | intronic |
| ADediting_57159 | chr1_204097641_+ | intronic |
| ADediting_57160 | chr1_204097922_+ | intronic |
| ADediting_57161 | chr1_204097958_+ | intronic |
| ADediting_57162 | chr1_204097959_+ | intronic |
| ADediting_57163 | chr1_204097976_+ | intronic |
| ADediting_57164 | chr1_204097985_+ | intronic |
| ADediting_57165 | chr1_204097988_+ | intronic |
| ADediting_57166 | chr1_204097998_+ | intronic |
| ADediting_57167 | chr1_204098081_+ | intronic |
| ADediting_57168 | chr1_204098082_+ | intronic |
| ADediting_57169 | chr1_204098083_+ | intronic |
| ADediting_57170 | chr1_204098096_+ | intronic |
| ADediting_57171 | chr1_204098099_+ | intronic |
| ADediting_57172 | chr1_204098122_+ | intronic |
| ADediting_57173 | chr1_204098123_+ | intronic |
| ADediting_57174 | chr1_204098135_+ | intronic |
| ADediting_57175 | chr1_204098222_+ | intronic |
| ADediting_57176 | chr1_204098356_+ | intronic |
| ADediting_57177 | chr1_204098357_+ | intronic |
| ADediting_57178 | chr1_204098366_+ | intronic |
| ADediting_57179 | chr1_204099884_+ | intronic |
| ADediting_57180 | chr1_204118023_+ | intronic |
| ADediting_57181 | chr1_204118032_+ | intronic |
| ADediting_57182 | chr1_204118048_+ | intronic |
| ADediting_57183 | chr1_204118055_+ | intronic |
| ADediting_57184 | chr1_204118103_+ | intronic |
| ADediting_57185 | chr1_204118111_+ | intronic |
| ADediting_57186 | chr1_204118116_+ | intronic |
| ADediting_57187 | chr1_204118122_+ | intronic |
| ADediting_57188 | chr1_204118125_+ | intronic |
| ADediting_57189 | chr1_204118129_+ | intronic |
| ADediting_57190 | chr1_204118131_+ | intronic |
| ADediting_57191 | chr1_204118140_+ | intronic |
| ADediting_57192 | chr1_204118176_+ | intronic |
| ADediting_57193 | chr1_204118189_+ | intronic |
| ADediting_57194 | chr1_204118193_+ | intronic |
| ADediting_57195 | chr1_204118199_+ | intronic |
| ADediting_57196 | chr1_204118208_+ | intronic |
| ADediting_57197 | chr1_204118252_+ | intronic |
| ADediting_57198 | chr1_204118262_+ | intronic |
| ADediting_57199 | chr1_204118375_+ | intronic |
| ADediting_57200 | chr1_204118440_+ | intronic |
| ADediting_57201 | chr1_204118460_+ | intronic |
| ADediting_57202 | chr1_204118461_+ | intronic |
| ADediting_57203 | chr1_204118478_+ | intronic |
| ADediting_57204 | chr1_204118490_+ | intronic |
| ADediting_57205 | chr1_204118518_+ | intronic |
| ADediting_57206 | chr1_204118526_+ | intronic |
| ADediting_57207 | chr1_204118527_+ | intronic |
| ADediting_57208 | chr1_204118535_+ | intronic |
| ADediting_57209 | chr1_204118544_+ | intronic |
| ADediting_57210 | chr1_204118551_+ | intronic |
| ADediting_57211 | chr1_204118552_+ | intronic |
| ADediting_57212 | chr1_204118553_+ | intronic |
| ADediting_57213 | chr1_204118590_+ | intronic |
| ADediting_57214 | chr1_204118594_+ | intronic |
| ADediting_57215 | chr1_204118607_+ | intronic |
| ADediting_57216 | chr1_204118616_+ | intronic |
| ADediting_57217 | chr1_204118617_+ | intronic |
| ADediting_57218 | chr1_204118618_+ | intronic |
| ADediting_57219 | chr1_204118629_+ | intronic |
| ADediting_57220 | chr1_204119731_+ | intronic |
| ADediting_57221 | chr1_204119737_+ | intronic |
| ADediting_57222 | chr1_204119774_+ | intronic |
| ADediting_57223 | chr1_204119775_+ | intronic |
| ADediting_57224 | chr1_204119779_+ | intronic |
| ADediting_57225 | chr1_204119798_+ | intronic |
| ADediting_57226 | chr1_204119806_+ | intronic |
| ADediting_57227 | chr1_204119807_+ | intronic |
| ADediting_57228 | chr1_204119812_+ | intronic |
| ADediting_57229 | chr1_204119867_+ | intronic |
| ADediting_57230 | chr1_204119895_+ | intronic |
| ADediting_57231 | chr1_204119926_+ | intronic |
| ADediting_57232 | chr1_204119947_+ | intronic |
| ADediting_57233 | chr1_204120367_+ | intronic |
| ADediting_57234 | chr1_204121044_+ | intronic |
| ADediting_57235 | chr1_204121060_+ | intronic |
| ADediting_57236 | chr1_204121080_+ | intronic |
| ADediting_57237 | chr1_204121154_+ | intronic |
| ADediting_57238 | chr1_204121234_+ | intronic |
| ADediting_57239 | chr1_204121263_+ | intronic |
| ADediting_57240 | chr1_204121270_+ | intronic |
| ADediting_57241 | chr1_204121320_+ | intronic |
| ADediting_57242 | chr1_204121342_+ | intronic |
| ADediting_57243 | chr1_204121354_+ | intronic |
| ADediting_57244 | chr1_204121355_+ | intronic |
| ADediting_57245 | chr1_204121358_+ | intronic |
| ADediting_57246 | chr1_204121388_+ | intronic |
| ADediting_57247 | chr1_204121404_+ | intronic |
| ADediting_1517057 | chr1_204118067_+ | intronic |
| ADediting_1517058 | chr1_204118072_+ | intronic |
| ADediting_1517059 | chr1_204118136_+ | intronic |
| ADediting_1517060 | chr1_204118137_+ | intronic |
| ADediting_1517061 | chr1_204118395_+ | intronic |
| ADediting_1517062 | chr1_204118421_+ | intronic |
| ADediting_1517063 | chr1_204118508_+ | intronic |
| ADediting_1517064 | chr1_204118513_+ | intronic |
| ADediting_1517065 | chr1_204119726_+ | intronic |
| ADediting_1517066 | chr1_204119793_+ | intronic |
| ADediting_1517067 | chr1_204119891_+ | intronic |
| ADediting_1517068 | chr1_204120179_+ | intronic |
| ADediting_1517069 | chr1_204120238_+ | intronic |
| ADediting_1517070 | chr1_204121000_+ | intronic |
| ADediting_1517071 | chr1_204121079_+ | intronic |
| ADediting_1517072 | chr1_204121097_+ | intronic |
| ADediting_1517073 | chr1_204121137_+ | intronic |
| ADediting_1517074 | chr1_204121145_+ | intronic |
| ADediting_1517075 | chr1_204121146_+ | intronic |
| ADediting_1517076 | chr1_204121160_+ | intronic |
| ADediting_1517077 | chr1_204121249_+ | intronic |
| ADediting_1517078 | chr1_204121261_+ | intronic |
| ADediting_1517079 | chr1_204121341_+ | intronic |
| ADediting_1517080 | chr1_204121372_+ | intronic |
| ADediting_1598381 | chr1_204079087_+ | intronic |
| ADediting_1598382 | chr1_204079132_+ | intronic |
| ADediting_1598383 | chr1_204079183_+ | intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_57119 | chr1_204077843_+ | SINE | Alu | Name=AluSz |
| ADediting_57120 | chr1_204077912_+ | SINE | Alu | Name=AluSz |
| ADediting_57121 | chr1_204077997_+ | SINE | Alu | Name=AluSz |
| ADediting_57122 | chr1_204079043_+ | SINE | Alu | Name=AluY |
| ADediting_57123 | chr1_204079044_+ | SINE | Alu | Name=AluY |
| ADediting_57124 | chr1_204079052_+ | SINE | Alu | Name=AluY |
| ADediting_57125 | chr1_204079065_+ | SINE | Alu | Name=AluY |
| ADediting_57126 | chr1_204079111_+ | SINE | Alu | Name=AluY |
| ADediting_57127 | chr1_204079135_+ | SINE | Alu | Name=AluY |
| ADediting_57128 | chr1_204079141_+ | SINE | Alu | Name=AluY |
| ADediting_57129 | chr1_204079151_+ | SINE | Alu | Name=AluY |
| ADediting_57130 | chr1_204079177_+ | SINE | Alu | Name=AluY |
| ADediting_57131 | chr1_204079268_+ | SINE | Alu | Name=AluY |
| ADediting_57132 | chr1_204079446_+ | SINE | Alu | Name=AluSx |
| ADediting_57133 | chr1_204079485_+ | SINE | Alu | Name=AluSx |
| ADediting_57134 | chr1_204079546_+ | SINE | Alu | Name=AluSx |
| ADediting_57135 | chr1_204079599_+ | SINE | Alu | Name=AluSx |
| ADediting_57136 | chr1_204079621_+ | SINE | Alu | Name=AluSx |
| ADediting_57137 | chr1_204085746_+ | SINE | Alu | Name=AluY |
| ADediting_57138 | chr1_204085755_+ | SINE | Alu | Name=AluY |
| ADediting_57139 | chr1_204085763_+ | SINE | Alu | Name=AluY |
| ADediting_57140 | chr1_204085771_+ | SINE | Alu | Name=AluY |
| ADediting_57141 | chr1_204085772_+ | SINE | Alu | Name=AluY |
| ADediting_57142 | chr1_204085774_+ | SINE | Alu | Name=AluY |
| ADediting_57143 | chr1_204085859_+ | SINE | Alu | Name=AluY |
| ADediting_57144 | chr1_204085865_+ | SINE | Alu | Name=AluY |
| ADediting_57145 | chr1_204085882_+ | SINE | Alu | Name=AluY |
| ADediting_57146 | chr1_204085886_+ | SINE | Alu | Name=AluY |
| ADediting_57147 | chr1_204085948_+ | SINE | Alu | Name=AluY |
| ADediting_57148 | chr1_204086397_+ | SINE | Alu | Name=AluSc |
| ADediting_57149 | chr1_204086954_+ | SINE | Alu | Name=AluY |
| ADediting_57150 | chr1_204086962_+ | SINE | Alu | Name=AluY |
| ADediting_57151 | chr1_204087185_+ | SINE | Alu | Name=AluY |
| ADediting_57152 | chr1_204097436_+ | SINE | Alu | Name=AluSp |
| ADediting_57153 | chr1_204097472_+ | SINE | Alu | Name=AluSp |
| ADediting_57154 | chr1_204097544_+ | SINE | Alu | Name=AluSp |
| ADediting_57155 | chr1_204097570_+ | SINE | Alu | Name=AluSp |
| ADediting_57156 | chr1_204097571_+ | SINE | Alu | Name=AluSp |
| ADediting_57157 | chr1_204097580_+ | SINE | Alu | Name=AluSp |
| ADediting_57158 | chr1_204097623_+ | SINE | Alu | Name=AluSp |
| ADediting_57159 | chr1_204097641_+ | SINE | Alu | Name=AluSp |
| ADediting_57160 | chr1_204097922_+ | SINE | Alu | Name=AluJr |
| ADediting_57161 | chr1_204097958_+ | SINE | Alu | Name=AluJr |
| ADediting_57162 | chr1_204097959_+ | SINE | Alu | Name=AluJr |
| ADediting_57163 | chr1_204097976_+ | SINE | Alu | Name=AluJr |
| ADediting_57164 | chr1_204097985_+ | SINE | Alu | Name=AluJr |
| ADediting_57165 | chr1_204097988_+ | SINE | Alu | Name=AluJr |
| ADediting_57166 | chr1_204097998_+ | SINE | Alu | Name=AluJr |
| ADediting_57167 | chr1_204098081_+ | SINE | Alu | Name=AluJr |
| ADediting_57168 | chr1_204098082_+ | SINE | Alu | Name=AluJr |
| ADediting_57169 | chr1_204098083_+ | SINE | Alu | Name=AluJr |
| ADediting_57170 | chr1_204098096_+ | SINE | Alu | Name=AluJr |
| ADediting_57171 | chr1_204098099_+ | SINE | Alu | Name=AluJr |
| ADediting_57172 | chr1_204098122_+ | SINE | Alu | Name=AluJr |
| ADediting_57173 | chr1_204098123_+ | SINE | Alu | Name=AluJr |
| ADediting_57174 | chr1_204098135_+ | SINE | Alu | Name=AluJr |
| ADediting_57175 | chr1_204098222_+ | SINE | Alu | Name=AluSx |
| ADediting_57176 | chr1_204098356_+ | SINE | Alu | Name=AluSx |
| ADediting_57177 | chr1_204098357_+ | SINE | Alu | Name=AluSx |
| ADediting_57178 | chr1_204098366_+ | SINE | Alu | Name=AluSx |
| ADediting_57179 | chr1_204099884_+ | SINE | Alu | Name=AluJr |
| ADediting_57180 | chr1_204118023_+ | SINE | Alu | Name=AluSz |
| ADediting_57181 | chr1_204118032_+ | SINE | Alu | Name=AluSz |
| ADediting_57182 | chr1_204118048_+ | SINE | Alu | Name=AluSz |
| ADediting_57183 | chr1_204118055_+ | SINE | Alu | Name=AluSz |
| ADediting_57184 | chr1_204118103_+ | SINE | Alu | Name=AluSz |
| ADediting_57185 | chr1_204118111_+ | SINE | Alu | Name=AluSz |
| ADediting_57186 | chr1_204118116_+ | SINE | Alu | Name=AluSz |
| ADediting_57187 | chr1_204118122_+ | SINE | Alu | Name=AluSz |
| ADediting_57188 | chr1_204118125_+ | SINE | Alu | Name=AluSz |
| ADediting_57189 | chr1_204118129_+ | SINE | Alu | Name=AluSz |
| ADediting_57190 | chr1_204118131_+ | SINE | Alu | Name=AluSz |
| ADediting_57191 | chr1_204118140_+ | SINE | Alu | Name=AluSz |
| ADediting_57192 | chr1_204118176_+ | SINE | Alu | Name=AluSz |
| ADediting_57193 | chr1_204118189_+ | SINE | Alu | Name=AluSz |
| ADediting_57194 | chr1_204118193_+ | SINE | Alu | Name=AluSz |
| ADediting_57195 | chr1_204118199_+ | SINE | Alu | Name=AluSz |
| ADediting_57196 | chr1_204118208_+ | SINE | Alu | Name=AluSz |
| ADediting_57197 | chr1_204118252_+ | SINE | Alu | Name=AluSz |
| ADediting_57198 | chr1_204118262_+ | SINE | Alu | Name=AluSz |
| ADediting_57199 | chr1_204118375_+ | SINE | Alu | Name=AluSz |
| ADediting_57200 | chr1_204118440_+ | SINE | Alu | Name=AluSz |
| ADediting_57201 | chr1_204118460_+ | SINE | Alu | Name=AluSz |
| ADediting_57202 | chr1_204118461_+ | SINE | Alu | Name=AluSz |
| ADediting_57203 | chr1_204118478_+ | SINE | Alu | Name=AluSz |
| ADediting_57204 | chr1_204118490_+ | SINE | Alu | Name=AluSz |
| ADediting_57205 | chr1_204118518_+ | SINE | Alu | Name=AluSz |
| ADediting_57206 | chr1_204118526_+ | SINE | Alu | Name=AluSz |
| ADediting_57207 | chr1_204118527_+ | SINE | Alu | Name=AluSz |
| ADediting_57208 | chr1_204118535_+ | SINE | Alu | Name=AluSz |
| ADediting_57209 | chr1_204118544_+ | SINE | Alu | Name=AluSz |
| ADediting_57210 | chr1_204118551_+ | SINE | Alu | Name=AluSz |
| ADediting_57211 | chr1_204118552_+ | SINE | Alu | Name=AluSz |
| ADediting_57212 | chr1_204118553_+ | SINE | Alu | Name=AluSz |
| ADediting_57213 | chr1_204118590_+ | SINE | Alu | Name=AluSz |
| ADediting_57214 | chr1_204118594_+ | SINE | Alu | Name=AluSz |
| ADediting_57215 | chr1_204118607_+ | SINE | Alu | Name=AluSz |
| ADediting_57216 | chr1_204118616_+ | SINE | Alu | Name=AluSz |
| ADediting_57217 | chr1_204118617_+ | SINE | Alu | Name=AluSz |
| ADediting_57218 | chr1_204118618_+ | SINE | Alu | Name=AluSz |
| ADediting_57219 | chr1_204118629_+ | SINE | Alu | Name=AluSz |
| ADediting_57220 | chr1_204119731_+ | SINE | Alu | Name=AluJr |
| ADediting_57221 | chr1_204119737_+ | SINE | Alu | Name=AluJr |
| ADediting_57222 | chr1_204119774_+ | SINE | Alu | Name=AluJr |
| ADediting_57223 | chr1_204119775_+ | SINE | Alu | Name=AluJr |
| ADediting_57224 | chr1_204119779_+ | SINE | Alu | Name=AluJr |
| ADediting_57225 | chr1_204119798_+ | SINE | Alu | Name=AluJr |
| ADediting_57226 | chr1_204119806_+ | SINE | Alu | Name=AluJr |
| ADediting_57227 | chr1_204119807_+ | SINE | Alu | Name=AluJr |
| ADediting_57228 | chr1_204119812_+ | SINE | Alu | Name=AluJr |
| ADediting_57229 | chr1_204119867_+ | SINE | Alu | Name=AluJr |
| ADediting_57230 | chr1_204119895_+ | SINE | Alu | Name=AluJr |
| ADediting_57231 | chr1_204119926_+ | SINE | Alu | Name=AluJr |
| ADediting_57232 | chr1_204119947_+ | SINE | Alu | Name=AluJr |
| ADediting_57234 | chr1_204121044_+ | SINE | Alu | Name=AluSg |
| ADediting_57235 | chr1_204121060_+ | SINE | Alu | Name=AluSg |
| ADediting_57236 | chr1_204121080_+ | SINE | Alu | Name=AluSg |
| ADediting_57237 | chr1_204121154_+ | SINE | Alu | Name=AluSg |
| ADediting_57238 | chr1_204121234_+ | SINE | Alu | Name=AluSg |
| ADediting_57239 | chr1_204121263_+ | SINE | Alu | Name=AluSg |
| ADediting_57240 | chr1_204121270_+ | SINE | Alu | Name=AluSg |
| ADediting_57241 | chr1_204121320_+ | SINE | Alu | Name=AluJr |
| ADediting_57242 | chr1_204121342_+ | SINE | Alu | Name=AluJr |
| ADediting_57243 | chr1_204121354_+ | SINE | Alu | Name=AluJr |
| ADediting_57244 | chr1_204121355_+ | SINE | Alu | Name=AluJr |
| ADediting_57245 | chr1_204121358_+ | SINE | Alu | Name=AluJr |
| ADediting_57246 | chr1_204121388_+ | SINE | Alu | Name=AluJr |
| ADediting_57247 | chr1_204121404_+ | SINE | Alu | Name=AluJr |
| ADediting_1517057 | chr1_204118067_+ | SINE | Alu | Name=AluSz |
| ADediting_1517058 | chr1_204118072_+ | SINE | Alu | Name=AluSz |
| ADediting_1517059 | chr1_204118136_+ | SINE | Alu | Name=AluSz |
| ADediting_1517060 | chr1_204118137_+ | SINE | Alu | Name=AluSz |
| ADediting_1517061 | chr1_204118395_+ | SINE | Alu | Name=AluSz |
| ADediting_1517062 | chr1_204118421_+ | SINE | Alu | Name=AluSz |
| ADediting_1517063 | chr1_204118508_+ | SINE | Alu | Name=AluSz |
| ADediting_1517064 | chr1_204118513_+ | SINE | Alu | Name=AluSz |
| ADediting_1517065 | chr1_204119726_+ | LTR | ERVL-MaLR | Name=MLT1A0-int |
| ADediting_1517066 | chr1_204119793_+ | SINE | Alu | Name=AluJr |
| ADediting_1517067 | chr1_204119891_+ | SINE | Alu | Name=AluJr |
| ADediting_1517068 | chr1_204120179_+ | LTR | ERVL-MaLR | Name=MLT1A0 |
| ADediting_1517070 | chr1_204121000_+ | SINE | Alu | Name=AluSg |
| ADediting_1517071 | chr1_204121079_+ | SINE | Alu | Name=AluSg |
| ADediting_1517072 | chr1_204121097_+ | SINE | Alu | Name=AluSg |
| ADediting_1517073 | chr1_204121137_+ | SINE | Alu | Name=AluSg |
| ADediting_1517074 | chr1_204121145_+ | SINE | Alu | Name=AluSg |
| ADediting_1517075 | chr1_204121146_+ | SINE | Alu | Name=AluSg |
| ADediting_1517076 | chr1_204121160_+ | SINE | Alu | Name=AluSg |
| ADediting_1517077 | chr1_204121249_+ | SINE | Alu | Name=AluSg |
| ADediting_1517078 | chr1_204121261_+ | SINE | Alu | Name=AluSg |
| ADediting_1517079 | chr1_204121341_+ | SINE | Alu | Name=AluJr |
| ADediting_1517080 | chr1_204121372_+ | SINE | Alu | Name=AluJr |
| ADediting_1598381 | chr1_204079087_+ | SINE | Alu | Name=AluY |
| ADediting_1598382 | chr1_204079132_+ | SINE | Alu | Name=AluY |
| ADediting_1598383 | chr1_204079183_+ | SINE | Alu | Name=AluY |
Top |
RNA A-to-I editing events in the alternative splicing sites for SOX13 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for SOX13 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
Top |
Protein coding region RNA A-to-I editings for SOX13 |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
Top |
The effects of the RNA editing to the miRNA binding sites for SOX13 |
| RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. |
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| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1517059 | chr1_204118136_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6844 | chr1 | 204118131 | 204118137 | 7mer-m8 | 204118117 | 204118138 | 157 | -7.49 |
| ADediting_1517063 | chr1_204118508_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-933 | chr1 | 204118505 | 204118511 | 7mer-m8 | 204118491 | 204118512 | 140 | -22.72 |
| ADediting_1517064 | chr1_204118513_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-8074 | chr1 | 204118512 | 204118518 | 7mer-m8 | 204118496 | 204118519 | 150 | -14.42 |
| ADediting_1517065 | chr1_204119726_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-125a-3p | chr1 | 204119720 | 204119726 | 7mer-m8 | 204119705 | 204119727 | 157 | -25.36 |
| ADediting_1517065 | chr1_204119726_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-4726-3p | chr1 | 204119722 | 204119728 | 7mer-m8 | 204119708 | 204119729 | 140 | -14.04 |
| ADediting_1517066 | chr1_204119793_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-5699-5p | chr1 | 204119790 | 204119796 | 7mer-m8 | 204119775 | 204119797 | 146 | -14.42 |
| ADediting_1517066 | chr1_204119793_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-874-5p | chr1 | 204119791 | 204119798 | 8mer-1a | 204119776 | 204119798 | 152 | -20.02 |
| ADediting_57182 | chr1_204118048_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-10392-3p | chr1 | 204118047 | 204118054 | 8mer-1a | 204118030 | 204118054 | 144 | -22.69 |
| ADediting_57183 | chr1_204118055_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-1224-3p | chr1 | 204118054 | 204118060 | 7mer-m8 | 204118042 | 204118061 | 156 | -26.28 |
| ADediting_57184 | chr1_204118103_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-1306-3p | chr1 | 204118097 | 204118103 | 7mer-m8 | 204118087 | 204118104 | 152 | -22.91 |
| ADediting_57185 | chr1_204118111_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-412-3p | chr1 | 204118105 | 204118111 | 7mer-m8 | 204118085 | 204118112 | 154 | -22.43 |
| ADediting_57185 | chr1_204118111_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6754-3p | chr1 | 204118105 | 204118111 | 7mer-m8 | 204118092 | 204118112 | 144 | -15.76 |
| ADediting_57186 | chr1_204118116_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-483-5p | chr1 | 204118113 | 204118119 | 7mer-m8 | 204118099 | 204118120 | 140 | -15.26 |
| ADediting_57188 | chr1_204118125_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-30a-3p | chr1 | 204118122 | 204118129 | 8mer-1a | 204118105 | 204118129 | 150 | -11.37 |
| ADediting_57188 | chr1_204118125_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-30d-3p | chr1 | 204118122 | 204118129 | 8mer-1a | 204118107 | 204118129 | 153 | -11.81 |
| ADediting_57188 | chr1_204118125_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-30e-3p | chr1 | 204118122 | 204118129 | 8mer-1a | 204118105 | 204118129 | 150 | -13.43 |
| ADediting_57188 | chr1_204118125_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-545-5p | chr1 | 204118119 | 204118126 | 8mer-1a | 204118105 | 204118126 | 143 | -11.2 |
| ADediting_57190 | chr1_204118131_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-153-5p | chr1 | 204118125 | 204118131 | 7mer-m8 | 204118110 | 204118132 | 156 | -8.16 |
| ADediting_57190 | chr1_204118131_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-3680-3p | chr1 | 204118129 | 204118136 | 8mer-1a | 204118114 | 204118136 | 140 | -11.75 |
| ADediting_57192 | chr1_204118176_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-1207-3p | chr1 | 204118170 | 204118176 | 7mer-m8 | 204118159 | 204118177 | 145 | -13.53 |
| ADediting_57192 | chr1_204118176_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-646 | chr1 | 204118172 | 204118178 | 7mer-m8 | 204118160 | 204118179 | 148 | -21.05 |
| ADediting_57193 | chr1_204118189_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-1913 | chr1 | 204118188 | 204118194 | 7mer-m8 | 204118173 | 204118195 | 147 | -21.59 |
| ADediting_57195 | chr1_204118199_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-4431 | chr1 | 204118196 | 204118202 | 7mer-m8 | 204118182 | 204118203 | 140 | -17.95 |
| ADediting_57195 | chr1_204118199_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6845-3p | chr1 | 204118193 | 204118199 | 7mer-m8 | 204118180 | 204118200 | 153 | -18.51 |
| ADediting_57196 | chr1_204118208_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-3155a | chr1 | 204118206 | 204118212 | 7mer-m8 | 204118192 | 204118213 | 141 | -23.88 |
| ADediting_57196 | chr1_204118208_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-3155b | chr1 | 204118206 | 204118212 | 7mer-m8 | 204118195 | 204118213 | 141 | -22.98 |
| ADediting_57196 | chr1_204118208_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-484 | chr1 | 204118206 | 204118212 | 7mer-m8 | 204118192 | 204118213 | 151 | -23.09 |
| ADediting_57198 | chr1_204118262_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-500b-3p | chr1 | 204118260 | 204118267 | 8mer-1a | 204118249 | 204118267 | 155 | -23.07 |
| ADediting_57199 | chr1_204118375_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-340-3p | chr1 | 204118370 | 204118377 | 8mer-1a | 204118355 | 204118377 | 147 | -21.65 |
| ADediting_57199 | chr1_204118375_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6827-3p | chr1 | 204118370 | 204118377 | 8mer-1a | 204118357 | 204118377 | 140 | -14.67 |
| ADediting_57200 | chr1_204118440_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6089 | chr1 | 204118439 | 204118445 | 7mer-m8 | 204118421 | 204118446 | 156 | -33.73 |
| ADediting_57202 | chr1_204118461_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6078 | chr1 | 204118458 | 204118465 | 8mer-1a | 204118447 | 204118465 | 146 | -18.98 |
| ADediting_57203 | chr1_204118478_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6089 | chr1 | 204118477 | 204118483 | 7mer-m8 | 204118461 | 204118484 | 164 | -39.99 |
| ADediting_57204 | chr1_204118490_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-4691-3p | chr1 | 204118488 | 204118494 | 7mer-m8 | 204118468 | 204118495 | 150 | -26.36 |
| ADediting_57205 | chr1_204118518_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-3622b-5p | chr1 | 204118514 | 204118520 | 7mer-m8 | 204118503 | 204118521 | 143 | -21.29 |
| ADediting_57205 | chr1_204118518_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-4645-5p | chr1 | 204118517 | 204118523 | 7mer-m8 | 204118506 | 204118524 | 142 | -13.03 |
| ADediting_57205 | chr1_204118518_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-4673 | chr1 | 204118517 | 204118523 | 7mer-m8 | 204118502 | 204118524 | 143 | -22.32 |
| ADediting_57206 | chr1_204118526_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-3157-5p | chr1 | 204118521 | 204118527 | 7mer-m8 | 204118506 | 204118528 | 159 | -20.09 |
| ADediting_57206 | chr1_204118526_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-34a-3p | chr1 | 204118523 | 204118529 | 7mer-m8 | 204118508 | 204118530 | 157 | -11.8 |
| ADediting_57207 | chr1_204118527_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-548ae-3p | chr1 | 204118526 | 204118532 | 7mer-m8 | 204118512 | 204118533 | 143 | -11.35 |
| ADediting_57207 | chr1_204118527_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-548ah-3p | chr1 | 204118526 | 204118532 | 7mer-m8 | 204118510 | 204118533 | 150 | -12.3 |
| ADediting_57207 | chr1_204118527_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-548aj-3p | chr1 | 204118526 | 204118532 | 7mer-m8 | 204118512 | 204118533 | 143 | -9.24 |
| ADediting_57207 | chr1_204118527_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-548am-3p | chr1 | 204118526 | 204118532 | 7mer-m8 | 204118510 | 204118533 | 150 | -11.65 |
| ADediting_57207 | chr1_204118527_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-548aq-3p | chr1 | 204118526 | 204118532 | 7mer-m8 | 204118511 | 204118533 | 143 | -11.73 |
| ADediting_57207 | chr1_204118527_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-548j-3p | chr1 | 204118526 | 204118532 | 7mer-m8 | 204118513 | 204118533 | 141 | -11.35 |
| ADediting_57207 | chr1_204118527_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-548x-3p | chr1 | 204118526 | 204118532 | 7mer-m8 | 204118513 | 204118533 | 143 | -9.24 |
| ADediting_57207 | chr1_204118527_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-7844-5p | chr1 | 204118524 | 204118530 | 7mer-m8 | 204118510 | 204118531 | 164 | -21.17 |
| ADediting_57210 | chr1_204118551_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-340-3p | chr1 | 204118545 | 204118552 | 8mer-1a | 204118531 | 204118552 | 149 | -18.08 |
| ADediting_57210 | chr1_204118551_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6827-3p | chr1 | 204118545 | 204118552 | 8mer-1a | 204118532 | 204118552 | 153 | -17.62 |
| ADediting_57214 | chr1_204118594_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-1255b-2-3p | chr1 | 204118589 | 204118595 | 7mer-m8 | 204118575 | 204118596 | 142 | -13.07 |
| ADediting_57214 | chr1_204118594_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-4751 | chr1 | 204118593 | 204118599 | 7mer-m8 | 204118577 | 204118600 | 158 | -19.47 |
| ADediting_57216 | chr1_204118616_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-4314 | chr1 | 204118611 | 204118618 | 8mer-1a | 204118600 | 204118618 | 143 | -16.25 |
| ADediting_57218 | chr1_204118618_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-383-3p | chr1 | 204118617 | 204118623 | 7mer-m8 | 204118606 | 204118624 | 140 | -14.49 |
| ADediting_57223 | chr1_204119775_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-18a-3p | chr1 | 204119774 | 204119780 | 7mer-m8 | 204119761 | 204119781 | 154 | -24.39 |
| ADediting_57223 | chr1_204119775_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-3157-3p | chr1 | 204119773 | 204119779 | 7mer-m8 | 204119760 | 204119780 | 166 | -30.48 |
| ADediting_57227 | chr1_204119807_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-12113 | chr1 | 204119801 | 204119807 | 7mer-m8 | 204119788 | 204119808 | 147 | -19.16 |
| ADediting_57227 | chr1_204119807_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-4539 | chr1 | 204119801 | 204119807 | 7mer-m8 | 204119783 | 204119808 | 147 | -18.46 |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1517057 | chr1_204118067_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-1245a | chr1 | 204118063 | 204118069 | 7mer-m8 | 204118050 | 204118070 | 146 | -18.91 |
| ADediting_1517057 | chr1_204118067_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-640 | chr1 | 204118061 | 204118067 | 7mer-m8 | 204118046 | 204118068 | 150 | -18.79 |
| ADediting_1517057 | chr1_204118067_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-8079 | chr1 | 204118063 | 204118069 | 7mer-m8 | 204118052 | 204118070 | 147 | -14.14 |
| ADediting_1517058 | chr1_204118072_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6790-3p | chr1 | 204118071 | 204118077 | 7mer-1a | 204118055 | 204118077 | 141 | -24.32 |
| ADediting_1517059 | chr1_204118136_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-4735-5p | chr1 | 204118135 | 204118141 | 7mer-m8 | 204118121 | 204118142 | 140 | -5.48 |
| ADediting_1517060 | chr1_204118137_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-4735-5p | chr1 | 204118135 | 204118141 | 7mer-m8 | 204118121 | 204118142 | 140 | -5.48 |
| ADediting_1517061 | chr1_204118395_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-125a-3p | chr1 | 204118393 | 204118399 | 7mer-m8 | 204118378 | 204118400 | 143 | -15.86 |
| ADediting_1517061 | chr1_204118395_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-542-3p | chr1 | 204118390 | 204118396 | 7mer-m8 | 204118375 | 204118397 | 155 | -12.06 |
| ADediting_1517063 | chr1_204118508_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-500a-3p | chr1 | 204118502 | 204118508 | 7mer-m8 | 204118490 | 204118509 | 147 | -15.96 |
| ADediting_1517065 | chr1_204119726_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6800-5p | chr1 | 204119720 | 204119726 | 7mer-m8 | 204119705 | 204119727 | 149 | -17.49 |
| ADediting_1517066 | chr1_204119793_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6878-3p | chr1 | 204119792 | 204119798 | 7mer-m8 | 204119777 | 204119799 | 150 | -27.54 |
| ADediting_57180 | chr1_204118023_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6807-5p | chr1 | 204118017 | 204118023 | 7mer-m8 | 204118002 | 204118024 | 147 | -20.24 |
| ADediting_57182 | chr1_204118048_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-150-5p | chr1 | 204118043 | 204118049 | 7mer-m8 | 204118029 | 204118050 | 140 | -15.8 |
| ADediting_57182 | chr1_204118048_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6778-3p | chr1 | 204118045 | 204118051 | 7mer-m8 | 204118032 | 204118052 | 143 | -13.97 |
| ADediting_57184 | chr1_204118103_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-4716-5p | chr1 | 204118100 | 204118106 | 7mer-m8 | 204118086 | 204118107 | 140 | -16.01 |
| ADediting_57184 | chr1_204118103_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-4781-3p | chr1 | 204118098 | 204118104 | 7mer-m8 | 204118083 | 204118105 | 145 | -18.01 |
| ADediting_57185 | chr1_204118111_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-193b-5p | chr1 | 204118109 | 204118116 | 8mer-1a | 204118095 | 204118116 | 142 | -15.74 |
| ADediting_57185 | chr1_204118111_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-3170 | chr1 | 204118110 | 204118116 | 7mer-m8 | 204118096 | 204118117 | 140 | -13.8 |
| ADediting_57185 | chr1_204118111_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6855-5p | chr1 | 204118110 | 204118116 | 7mer-m8 | 204118093 | 204118117 | 145 | -17.8 |
| ADediting_57186 | chr1_204118116_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-3170 | chr1 | 204118110 | 204118116 | 7mer-m8 | 204118096 | 204118117 | 140 | -13.8 |
| ADediting_57186 | chr1_204118116_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-4426 | chr1 | 204118114 | 204118120 | 7mer-m8 | 204118105 | 204118121 | 140 | -11.43 |
| ADediting_57186 | chr1_204118116_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-4647 | chr1 | 204118114 | 204118120 | 7mer-m8 | 204118099 | 204118121 | 152 | -12.11 |
| ADediting_57186 | chr1_204118116_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-4662b | chr1 | 204118114 | 204118120 | 7mer-m8 | 204118101 | 204118121 | 141 | -12.48 |
| ADediting_57186 | chr1_204118116_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6855-5p | chr1 | 204118110 | 204118116 | 7mer-m8 | 204118093 | 204118117 | 145 | -17.8 |
| ADediting_57186 | chr1_204118116_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6890-5p | chr1 | 204118111 | 204118117 | 7mer-m8 | 204118098 | 204118118 | 142 | -13.42 |
| ADediting_57191 | chr1_204118140_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-4735-5p | chr1 | 204118135 | 204118141 | 7mer-m8 | 204118121 | 204118142 | 140 | -5.48 |
| ADediting_57192 | chr1_204118176_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6869-5p | chr1 | 204118174 | 204118180 | 7mer-m8 | 204118157 | 204118181 | 153 | -23 |
| ADediting_57193 | chr1_204118189_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-4264 | chr1 | 204118184 | 204118190 | 7mer-m8 | 204118175 | 204118191 | 142 | -12.53 |
| ADediting_57194 | chr1_204118193_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-1976 | chr1 | 204118191 | 204118198 | 8mer-1a | 204118180 | 204118198 | 146 | -17.54 |
| ADediting_57194 | chr1_204118193_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6747-3p | chr1 | 204118189 | 204118196 | 8mer-1a | 204118176 | 204118196 | 152 | -20.66 |
| ADediting_57196 | chr1_204118208_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-498-5p | chr1 | 204118202 | 204118208 | 7mer-m8 | 204118187 | 204118209 | 142 | -9.71 |
| ADediting_57199 | chr1_204118375_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-4522 | chr1 | 204118374 | 204118380 | 7mer-m8 | 204118361 | 204118381 | 153 | -17.1 |
| ADediting_57199 | chr1_204118375_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6888-3p | chr1 | 204118371 | 204118377 | 7mer-m8 | 204118358 | 204118378 | 151 | -14.86 |
| ADediting_57200 | chr1_204118440_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-1184 | chr1 | 204118435 | 204118441 | 7mer-m8 | 204118417 | 204118442 | 146 | -15.97 |
| ADediting_57200 | chr1_204118440_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6884-5p | chr1 | 204118439 | 204118445 | 7mer-m8 | 204118425 | 204118446 | 154 | -25.29 |
| ADediting_57203 | chr1_204118478_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-4478 | chr1 | 204118476 | 204118482 | 7mer-m8 | 204118468 | 204118483 | 149 | -25.05 |
| ADediting_57203 | chr1_204118478_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-4649-3p | chr1 | 204118473 | 204118479 | 7mer-m8 | 204118460 | 204118480 | 140 | -14.11 |
| ADediting_57203 | chr1_204118478_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-7160-5p | chr1 | 204118474 | 204118480 | 7mer-m8 | 204118461 | 204118481 | 146 | -20.4 |
| ADediting_57204 | chr1_204118490_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-5690 | chr1 | 204118488 | 204118494 | 7mer-m8 | 204118475 | 204118495 | 145 | -17.72 |
| ADediting_57215 | chr1_204118607_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-4478 | chr1 | 204118605 | 204118611 | 7mer-m8 | 204118596 | 204118612 | 151 | -27.41 |
| ADediting_57215 | chr1_204118607_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-4649-3p | chr1 | 204118602 | 204118608 | 7mer-m8 | 204118589 | 204118609 | 140 | -13.09 |
| ADediting_57215 | chr1_204118607_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6765-5p | chr1 | 204118601 | 204118607 | 7mer-m8 | 204118587 | 204118608 | 153 | -26.39 |
| ADediting_57215 | chr1_204118607_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-7160-5p | chr1 | 204118603 | 204118609 | 7mer-m8 | 204118592 | 204118610 | 147 | -20.43 |
| ADediting_57216 | chr1_204118616_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-887-5p | chr1 | 204118610 | 204118617 | 8mer-1a | 204118598 | 204118617 | 143 | -13.53 |
| ADediting_57218 | chr1_204118618_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-4310 | chr1 | 204118617 | 204118623 | 7mer-m8 | 204118609 | 204118624 | 140 | -8.38 |
| ADediting_57218 | chr1_204118618_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-7157-5p | chr1 | 204118617 | 204118623 | 7mer-m8 | 204118604 | 204118624 | 149 | -15.07 |
| ADediting_57220 | chr1_204119731_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-1271-3p | chr1 | 204119730 | 204119737 | 8mer-1a | 204119714 | 204119737 | 154 | -19.5 |
| ADediting_57220 | chr1_204119731_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-3176 | chr1 | 204119726 | 204119732 | 7mer-m8 | 204119715 | 204119733 | 151 | -21.43 |
| ADediting_57220 | chr1_204119731_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-3922-3p | chr1 | 204119726 | 204119732 | 7mer-m8 | 204119712 | 204119733 | 142 | -15.4 |
| ADediting_57220 | chr1_204119731_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-550a-3-5p | chr1 | 204119730 | 204119737 | 8mer-1a | 204119712 | 204119737 | 143 | -21.22 |
| ADediting_57220 | chr1_204119731_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-550a-5p | chr1 | 204119730 | 204119737 | 8mer-1a | 204119709 | 204119737 | 148 | -21.22 |
| ADediting_57221 | chr1_204119737_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-550b-2-5p | chr1 | 204119731 | 204119737 | 7mer-m8 | 204119711 | 204119738 | 153 | -23.08 |
| ADediting_57221 | chr1_204119737_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6529-3p | chr1 | 204119732 | 204119738 | 7mer-m8 | 204119718 | 204119739 | 145 | -14.09 |
| ADediting_57221 | chr1_204119737_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6889-3p | chr1 | 204119732 | 204119738 | 7mer-m8 | 204119717 | 204119739 | 143 | -15.84 |
| ADediting_57224 | chr1_204119779_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-1976 | chr1 | 204119777 | 204119783 | 7mer-m8 | 204119763 | 204119784 | 152 | -25.54 |
| ADediting_57224 | chr1_204119779_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-660-3p | chr1 | 204119778 | 204119785 | 8mer-1a | 204119765 | 204119785 | 143 | -15.8 |
| ADediting_57224 | chr1_204119779_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6747-3p | chr1 | 204119775 | 204119782 | 8mer-1a | 204119761 | 204119782 | 154 | -24.54 |
| ADediting_57225 | chr1_204119798_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-3176 | chr1 | 204119793 | 204119799 | 7mer-m8 | 204119782 | 204119800 | 145 | -17.46 |
| ADediting_57225 | chr1_204119798_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-3922-3p | chr1 | 204119793 | 204119799 | 7mer-m8 | 204119780 | 204119800 | 150 | -19.59 |
| ADediting_57225 | chr1_204119798_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6878-3p | chr1 | 204119792 | 204119798 | 7mer-m8 | 204119777 | 204119799 | 150 | -27.54 |
| ADediting_57228 | chr1_204119812_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-3663-5p | chr1 | 204119807 | 204119813 | 7mer-m8 | 204119798 | 204119814 | 141 | -19.69 |
| ADediting_57228 | chr1_204119812_+ | ENSG00000143842.15 | ENST00000367203.8 | SOX13-202 | hsa-miR-6131 | chr1 | 204119808 | 204119814 | 7mer-m8 | 204119797 | 204119815 | 140 | -17.94 |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1337758 | chr7_5495892_- | ENSG00000143842.15 | ENST00000367204.6 | SOX13-203 | hsa-miR-589-5p | chr1 | 204127067 | 204127074 | 8mer-1a | 204127055 | 204127074 | 144 | -22.66 |
| ADediting_1337758 | chr7_5495892_- | ENSG00000143842.15 | ENST00000618875.4 | SOX13-210 | hsa-miR-589-5p | chr1 | 204127067 | 204127074 | 8mer-1a | 204127055 | 204127074 | 144 | -22.66 |
| ADediting_1471003 | chr9_63819626_+ | ENSG00000143842.15 | ENST00000367204.6 | SOX13-203 | hsa-miR-4477b | chr1 | 204127563 | 204127570 | 8mer-1a | 204127549 | 204127570 | 140 | -10.09 |
| ADediting_1471003 | chr9_63819626_+ | ENSG00000143842.15 | ENST00000618875.4 | SOX13-210 | hsa-miR-4477b | chr1 | 204127563 | 204127570 | 8mer-1a | 204127549 | 204127570 | 140 | -10.09 |
| ADediting_1471004 | chr9_63819627_+ | ENSG00000143842.15 | ENST00000367204.6 | SOX13-203 | hsa-miR-4477b | chr1 | 204127436 | 204127442 | 7mer-m8 | 204127418 | 204127443 | 159 | -17.5 |
| ADediting_1471004 | chr9_63819627_+ | ENSG00000143842.15 | ENST00000618875.4 | SOX13-210 | hsa-miR-4477b | chr1 | 204127436 | 204127442 | 7mer-m8 | 204127418 | 204127443 | 159 | -17.5 |
| ADediting_496066 | chr15_66496985_- | ENSG00000143842.15 | ENST00000367204.6 | SOX13-203 | hsa-miR-4512 | chr1 | 204126984 | 204126990 | 7mer-m8 | 204126970 | 204126991 | 146 | -21.89 |
| ADediting_496066 | chr15_66496985_- | ENSG00000143842.15 | ENST00000618875.4 | SOX13-210 | hsa-miR-4512 | chr1 | 204126984 | 204126990 | 7mer-m8 | 204126970 | 204126991 | 146 | -21.89 |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_496066 | chr15_66496985_- | ENSG00000143842.15 | ENST00000367204.6 | SOX13-203 | hsa-miR-4512 | chr1 | 204126911 | 204126917 | 7mer-m8 | 204126897 | 204126918 | 141 | -15.76 |
| ADediting_496066 | chr15_66496985_- | ENSG00000143842.15 | ENST00000367204.6 | SOX13-203 | hsa-miR-4512 | chr1 | 204127224 | 204127230 | 7mer-m8 | 204127210 | 204127231 | 145 | -25.38 |
| ADediting_496066 | chr15_66496985_- | ENSG00000143842.15 | ENST00000618875.4 | SOX13-210 | hsa-miR-4512 | chr1 | 204126911 | 204126917 | 7mer-m8 | 204126897 | 204126918 | 141 | -15.76 |
| ADediting_496066 | chr15_66496985_- | ENSG00000143842.15 | ENST00000618875.4 | SOX13-210 | hsa-miR-4512 | chr1 | 204127224 | 204127230 | 7mer-m8 | 204127210 | 204127231 | 145 | -25.38 |
| Differentially expressed gene-miRNA network |
Top |
The effects of the RNA editing to the stability of the RNA structures for SOX13 |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000367203.8 | lncRNA |  |  |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_57180 | ENST00000367203.8 | chr1_204118023_+ | 1689 | -1593.20 | -1593.60 | -1656.70 |
| ADediting_57181 | ENST00000367203.8 | chr1_204118032_+ | 1698 | -1593.60 | -1593.60 | -1656.70 |
| ADediting_57182 | ENST00000367203.8 | chr1_204118048_+ | 1714 | -1592.70 | -1593.60 | -1656.70 |
| ADediting_57183 | ENST00000367203.8 | chr1_204118055_+ | 1721 | -1600.20 | -1593.60 | -1656.70 |
| ADediting_1517057 | ENST00000367203.8 | chr1_204118067_+ | 1733 | -1593.20 | -1593.60 | -1656.70 |
| ADediting_1517058 | ENST00000367203.8 | chr1_204118072_+ | 1738 | -1595.70 | -1593.60 | -1656.70 |
| ADediting_57184 | ENST00000367203.8 | chr1_204118103_+ | 1769 | -1599.00 | -1593.60 | -1656.70 |
| ADediting_57185 | ENST00000367203.8 | chr1_204118111_+ | 1777 | -1593.30 | -1593.60 | -1656.70 |
| ADediting_57186 | ENST00000367203.8 | chr1_204118116_+ | 1782 | -1599.40 | -1593.60 | -1656.70 |
| ADediting_57187 | ENST00000367203.8 | chr1_204118122_+ | 1788 | -1593.60 | -1593.60 | -1656.70 |
| ADediting_57188 | ENST00000367203.8 | chr1_204118125_+ | 1791 | -1593.70 | -1593.60 | -1656.70 |
| ADediting_57189 | ENST00000367203.8 | chr1_204118129_+ | 1795 | -1593.60 | -1593.60 | -1656.70 |
| ADediting_57190 | ENST00000367203.8 | chr1_204118131_+ | 1797 | -1593.60 | -1593.60 | -1656.70 |
| ADediting_1517059 | ENST00000367203.8 | chr1_204118136_+ | 1802 | -1593.70 | -1593.60 | -1656.70 |
| ADediting_1517060 | ENST00000367203.8 | chr1_204118137_+ | 1803 | -1593.60 | -1593.60 | -1656.70 |
| ADediting_57191 | ENST00000367203.8 | chr1_204118140_+ | 1806 | -1593.30 | -1593.60 | -1656.70 |
| ADediting_57192 | ENST00000367203.8 | chr1_204118176_+ | 1842 | -1593.60 | -1593.60 | -1656.70 |
| ADediting_57193 | ENST00000367203.8 | chr1_204118189_+ | 1855 | -1592.70 | -1593.60 | -1656.70 |
| ADediting_57194 | ENST00000367203.8 | chr1_204118193_+ | 1859 | -1592.90 | -1593.60 | -1656.70 |
| ADediting_57195 | ENST00000367203.8 | chr1_204118199_+ | 1865 | -1593.60 | -1593.60 | -1656.70 |
| ADediting_57196 | ENST00000367203.8 | chr1_204118208_+ | 1874 | -1593.60 | -1593.60 | -1656.70 |
| ADediting_57197 | ENST00000367203.8 | chr1_204118252_+ | 1918 | -1593.20 | -1593.60 | -1656.70 |
| ADediting_57198 | ENST00000367203.8 | chr1_204118262_+ | 1928 | -1592.30 | -1593.60 | -1656.70 |
| ADediting_57199 | ENST00000367203.8 | chr1_204118375_+ | 2041 | -1597.40 | -1593.60 | -1656.70 |
| ADediting_1517061 | ENST00000367203.8 | chr1_204118395_+ | 2061 | -1593.20 | -1593.60 | -1656.70 |
| ADediting_1517062 | ENST00000367203.8 | chr1_204118421_+ | 2087 | -1600.00 | -1593.60 | -1656.70 |
| ADediting_57200 | ENST00000367203.8 | chr1_204118440_+ | 2106 | -1593.20 | -1593.60 | -1656.70 |
| ADediting_57201 | ENST00000367203.8 | chr1_204118460_+ | 2126 | -1593.30 | -1593.60 | -1656.70 |
| ADediting_57202 | ENST00000367203.8 | chr1_204118461_+ | 2127 | -1593.30 | -1593.60 | -1656.70 |
| ADediting_57203 | ENST00000367203.8 | chr1_204118478_+ | 2144 | -1592.90 | -1593.60 | -1656.70 |
| ADediting_57204 | ENST00000367203.8 | chr1_204118490_+ | 2156 | -1593.30 | -1593.60 | -1656.70 |
| ADediting_1517063 | ENST00000367203.8 | chr1_204118508_+ | 2174 | -1598.70 | -1593.60 | -1656.70 |
| ADediting_1517064 | ENST00000367203.8 | chr1_204118513_+ | 2179 | -1593.20 | -1593.60 | -1656.70 |
| ADediting_57205 | ENST00000367203.8 | chr1_204118518_+ | 2184 | -1592.60 | -1593.60 | -1656.70 |
| ADediting_57206 | ENST00000367203.8 | chr1_204118526_+ | 2192 | -1593.70 | -1593.60 | -1656.70 |
| ADediting_57207 | ENST00000367203.8 | chr1_204118527_+ | 2193 | -1593.60 | -1593.60 | -1656.70 |
| ADediting_57208 | ENST00000367203.8 | chr1_204118535_+ | 2201 | -1593.60 | -1593.60 | -1656.70 |
| ADediting_57209 | ENST00000367203.8 | chr1_204118544_+ | 2210 | -1593.20 | -1593.60 | -1656.70 |
| ADediting_57210 | ENST00000367203.8 | chr1_204118551_+ | 2217 | -1598.00 | -1593.60 | -1656.70 |
| ADediting_57211 | ENST00000367203.8 | chr1_204118552_+ | 2218 | -1594.80 | -1593.60 | -1656.70 |
| ADediting_57212 | ENST00000367203.8 | chr1_204118553_+ | 2219 | -1597.40 | -1593.60 | -1656.70 |
| ADediting_57213 | ENST00000367203.8 | chr1_204118590_+ | 2256 | -1593.30 | -1593.60 | -1656.70 |
| ADediting_57214 | ENST00000367203.8 | chr1_204118594_+ | 2260 | -1593.00 | -1593.60 | -1656.70 |
| ADediting_57215 | ENST00000367203.8 | chr1_204118607_+ | 2273 | -1599.80 | -1593.60 | -1656.70 |
| ADediting_57216 | ENST00000367203.8 | chr1_204118616_+ | 2282 | -1593.70 | -1593.60 | -1656.70 |
| ADediting_57217 | ENST00000367203.8 | chr1_204118617_+ | 2283 | -1593.30 | -1593.60 | -1656.70 |
| ADediting_57218 | ENST00000367203.8 | chr1_204118618_+ | 2284 | -1599.80 | -1593.60 | -1656.70 |
| ADediting_57219 | ENST00000367203.8 | chr1_204118629_+ | 2295 | -1593.60 | -1593.60 | -1656.70 |
| ADediting_1517065 | ENST00000367203.8 | chr1_204119726_+ | 3392 | -1594.40 | -1593.60 | -1656.70 |
| ADediting_57220 | ENST00000367203.8 | chr1_204119731_+ | 3397 | -1595.20 | -1593.60 | -1656.70 |
| ADediting_57221 | ENST00000367203.8 | chr1_204119737_+ | 3403 | -1592.90 | -1593.60 | -1656.70 |
| ADediting_57222 | ENST00000367203.8 | chr1_204119774_+ | 3440 | -1596.20 | -1593.60 | -1656.70 |
| ADediting_57223 | ENST00000367203.8 | chr1_204119775_+ | 3441 | -1593.60 | -1593.60 | -1656.70 |
| ADediting_57224 | ENST00000367203.8 | chr1_204119779_+ | 3445 | -1594.40 | -1593.60 | -1656.70 |
| ADediting_1517066 | ENST00000367203.8 | chr1_204119793_+ | 3459 | -1592.70 | -1593.60 | -1656.70 |
| ADediting_57225 | ENST00000367203.8 | chr1_204119798_+ | 3464 | -1593.20 | -1593.60 | -1656.70 |
| ADediting_57226 | ENST00000367203.8 | chr1_204119806_+ | 3472 | -1596.70 | -1593.60 | -1656.70 |
| ADediting_57227 | ENST00000367203.8 | chr1_204119807_+ | 3473 | -1597.30 | -1593.60 | -1656.70 |
| ADediting_57228 | ENST00000367203.8 | chr1_204119812_+ | 3478 | -1596.00 | -1593.60 | -1656.70 |
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Relation with ADAR for SOX13 |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | ADediting_57143 | chr1_204085859_+ | 0.554150186649689 | -0.0337246135268518 | 0.0150130110285464 | -0.138027827379415 | 6.26161858260239e-12 | 0.377386945686108 |
| DLPFC | ADediting_57156 | chr1_204097571_+ | 0.540769595427259 | -0.0348696631820874 | 0.00607867623591934 | -0.155499973500542 | 5.09835543988679e-18 | 0.464787722689124 |
| DLPFC | ADediting_57183 | chr1_204118055_+ | 0.657504133858913 | -0.0252793501836791 | 0.0137615866335067 | -0.139790332478877 | 1.08827772356877e-09 | 0.337382623385666 |
| DLPFC | ADediting_57186 | chr1_204118116_+ | 0.29499898449984 | -0.0596660242985048 | 0.000193896609684343 | -0.210150670945164 | 5.82666743734336e-12 | 0.377907876222258 |
| DLPFC | ADediting_57190 | chr1_204118131_+ | 0.618760893952381 | -0.0283711150235218 | 0.0104842561093251 | -0.14518165204705 | 1.20376777140645e-15 | 0.433665137337071 |
| DLPFC | ADediting_57191 | chr1_204118140_+ | 0.324193144771068 | -0.0561768003048403 | 0.00573155283384361 | -0.156577576141998 | 1.97749040980292e-09 | 0.332363947770352 |
| CER | ADediting_57202 | chr1_204118461_+ | 0.000616322145944892 | 0.276438922512725 | 0.000259209468208073 | 0.294101194250405 | 6.38417978403612e-05 | 0.320475172651368 |
| CER | ADediting_57204 | chr1_204118490_+ | 0.00254630290278817 | 0.244691086403297 | 6.00108573476632e-05 | 0.321584841646501 | 0.00138810678240705 | 0.258747454102517 |
| DLPFC | ADediting_57210 | chr1_204118551_+ | 0.623717024495066 | 0.0279711383696468 | 0.0932326354379963 | -0.0955050931293505 | 4.59788994105354e-20 | 0.489272788471954 |
| CER | ADediting_57215 | chr1_204118607_+ | 0.00228955039921645 | 0.247210427243381 | 2.20443621305605e-06 | 0.37541444099735 | 5.46281527437786e-05 | 0.323261789590364 |
| TCX | ADediting_57215 | chr1_204118607_+ | 0.221747130956153 | 0.100354795827464 | 0.0984255090092522 | -0.135439473680596 | 3.17065744590315e-08 | 0.432830712592325 |
| CER | ADediting_57218 | chr1_204118618_+ | 0.00115471594612393 | 0.262864649682051 | 1.80550544283647e-07 | 0.410570111356463 | 0.0539900970121021 | 0.157665487709548 |
| DLPFC | ADediting_57222 | chr1_204119774_+ | 0.00233434728441393 | 0.172290440565034 | 0.393146693174979 | 0.0486675252813112 | 6.07143770232956e-10 | 0.342201139705925 |
| CER | ADediting_57222 | chr1_204119774_+ | 0.00395009666561092 | 0.234005297877239 | 8.65994403361885e-05 | 0.3149438306401 | 6.90559663171799e-06 | 0.357901783773751 |
| DLPFC | ADediting_57224 | chr1_204119779_+ | 0.0322084206910424 | 0.121686061506973 | 0.730540971191791 | 0.0196383945250908 | 7.16193469734719e-11 | 0.359179686228329 |
| DLPFC | ADediting_57225 | chr1_204119798_+ | 0.00433352349779608 | 0.1616148259365 | 0.305243511672273 | 0.0584167439439658 | 4.95015225267965e-12 | 0.37908408920678 |
| CER | ADediting_57226 | chr1_204119806_+ | 0.0107716577013001 | 0.207670528328356 | 6.10169608176525e-05 | 0.321287124690627 | 0.00341072857568605 | 0.237629543304988 |
| CER | ADediting_57229 | chr1_204119867_+ | 0.00304936383606362 | 0.240358958140201 | 7.50982802058136e-05 | 0.31754247358459 | 0.00190956872672747 | 0.251454881423189 |
| DLPFC | ADediting_57234 | chr1_204121044_+ | 0.00101604589607433 | 0.185758300803442 | 0.24047934360562 | 0.0668622452894471 | 3.71612397807096e-14 | 0.412361438468987 |
| TCX | ADediting_57234 | chr1_204121044_+ | 0.669103810820339 | 0.0351787738844899 | 0.197769665215862 | -0.105748716604178 | 6.10739853928687e-06 | 0.359835794844897 |
| DLPFC | ADediting_57235 | chr1_204121060_+ | 0.0508106390354453 | 0.111032569958448 | 0.895860361943245 | -0.0074642436123575 | 8.42847231198348e-14 | 0.407043608216963 |
| CER | ADediting_57235 | chr1_204121060_+ | 0.0158688418464437 | 0.196650445622478 | 0.00011142322556393 | 0.310288033473759 | 4.7262945536999e-05 | 0.325826947498364 |
| DLPFC | ADediting_57236 | chr1_204121080_+ | 0.0631301187052537 | 0.10567407213253 | 0.849597760903314 | -0.0108137255785381 | 5.72143171456379e-10 | 0.342686794138322 |
| CER | ADediting_57236 | chr1_204121080_+ | 0.00940202942851498 | 0.211416705367022 | 6.8779101070025e-06 | 0.357965237871995 | 0.00314958925051772 | 0.239573885856084 |
| DLPFC | ADediting_57240 | chr1_204121270_+ | 0.0154590436886643 | 0.137430709758896 | 0.896296099515965 | 0.00743283500065097 | 1.19052914341865e-08 | 0.316705880656596 |
| CER | ADediting_57240 | chr1_204121270_+ | 0.00488115994449626 | 0.228684709743723 | 1.91285953224378e-05 | 0.341351334879575 | 0.000215558195382588 | 0.297718186107344 |
| TCX | ADediting_57240 | chr1_204121270_+ | 0.907099563138087 | -0.00960849222199223 | 0.0229057838205331 | -0.18568803002652 | 3.17812860687832e-05 | 0.332740827190817 |
| CER | ADediting_57245 | chr1_204121358_+ | 0.00883439868681909 | 0.213112222638361 | 3.0335483809105e-06 | 0.370620366353596 | 0.000122164963489299 | 0.308568513908069 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 0.000343323908653997 | 0.202056978052238 | 0.040902964168475 | 0.11619628682921 | 6.89621816837199e-60 | 0.761233019657037 |
| AC | 5.98803884831405e-24 | 0.580806239153031 | 3.58097868191382e-14 | 0.454904676494456 | 8.11094154665979e-38 | 0.697882280538824 |
| PCC | 0.0868692357525229 | 0.124221868511803 | 0.279876890667864 | 0.0785840430482309 | 2.07493535446953e-15 | 0.53296813086818 |
| CER | 5.02381452983837e-08 | 0.427095203914011 | 4.19746482855529e-12 | 0.527164758773727 | 5.13457649651859e-22 | 0.683921170141143 |
| TCX | 0.0660241049258669 | 0.150496238722544 | 0.00168703394939499 | -0.254312692445885 | 4.81445182820572e-21 | 0.671960437602277 |
| FP | 0.0818946437440664 | 0.130764058905688 | 0.0892110930532371 | -0.127765979999504 | 2.46993291861465e-14 | 0.53092681858857 |
| IFG | 0.0653194130465505 | 0.374247019684979 | 0.00436205707823592 | 0.550380098498811 | 0.000189460260617156 | 0.679104921197009 |
| PG | 0.103128976019315 | -0.119884636120551 | 0.000491004572181335 | -0.253109606092044 | 1.98329620099864e-08 | 0.397215170414073 |
| STG | 0.254130650386958 | -0.125815000882588 | 0.0123798881185695 | -0.271809328782949 | 1.11571646506114e-09 | 0.604734809268655 |
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Relation with AD stages for SOX13 |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| CER | ADediting_57215 | chr1_204118607_+ | 0.000423908142070973 | 0.333294439569857 |
| CER | ADediting_57222 | chr1_204119774_+ | 0.00105678654843044 | 0.310902534432917 |
| CER | ADediting_57240 | chr1_204121270_+ | 0.000663055971027386 | 0.322542312832059 |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
| CER | 3.32700333915805e-11 | 0.583790617369225 |
| TCX | 4.47426393987958e-10 | 0.559652136737019 |
| PG | 1.05464106395215e-05 | 0.316813482667787 |
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RelatedDrugs for SOX13 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SOX13 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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