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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for ATP5MF |
 Gene summary |
| Gene information | Gene symbol | ATP5MF | Gene ID | 9551 |
| Gene name | ATP synthase membrane subunit f | |
| Synonyms | ATP5J2|ATP5JL | |
| Cytomap | 7q22.1 | |
| Type of gene | protein-coding | |
| Description | ATP synthase subunit f, mitochondrialATP synthase f chain, mitochondrialATP synthase, H+ transporting, mitochondrial F0 complex, subunit fATP synthase, H+ transporting, mitochondrial Fo complex subunit F2F1F0-type ATPase subunit fF1Fo-ATP synthase co | |
| Modification date | 20200313 | |
| UniProtAcc | P56134, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
| ATP5MF | GO:0042776 | mitochondrial ATP synthesis coupled proton transport | 12110673 |
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RNA A-to-I events for ATP5MF |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_1376932(99459548, -), ADediting_1376933(99459626, -), ADediting_1376934(99461302, -), ADediting_1376935(99461312, -), ADediting_1376936(99461321, -), ADediting_1376937(99461325, -), ADediting_1376938(99461334, -), ADediting_1376939(99461348, -), ADediting_1376940(99461626, -), ADediting_1376941(99461627, -), ADediting_1376942(99461641, -), ADediting_1376943(99461721, -), ADediting_1376944(99461751, -), ADediting_1376945(99461782, -), ADediting_1376946(99461786, -), ADediting_1376947(99461790, -), ADediting_1376948(99461796, -), ADediting_1376949(99461804, -), ADediting_1376950(99461822, -), ADediting_1376951(99461851, -), ADediting_1376952(99461861, -), ADediting_1376953(99461862, -), ADediting_1376954(99461885, -), ADediting_1376955(99461900, -), ADediting_1376956(99461930, -), ADediting_1376957(99461931, -), ADediting_1376958(99462196, -), ADediting_1376959(99462218, -), ADediting_1376960(99462234, -), ADediting_1376961(99462259, -), ADediting_1376962(99462263, -), ADediting_1376963(99462285, -), ADediting_1376964(99462346, -), ADediting_1376965(99462352, -), ADediting_1376966(99462356, -), ADediting_1376967(99462368, -), ADediting_1376968(99462405, -), ADediting_1376969(99462416, -), ADediting_1376970(99462421, -), ADediting_1376971(99462520, -), ADediting_1376972(99462583, -), ADediting_1376973(99462595, -), ADediting_1376974(99462609, -), ADediting_1376975(99462612, -), ADediting_1376976(99462645, -), ADediting_1376977(99462653, -), ADediting_1376978(99462663, -), ADediting_1376979(99462666, -), ADediting_1376980(99462675, -), ADediting_1376981(99462692, -), ADediting_1376982(99462699, -), ADediting_1376983(99462712, -), ADediting_1376984(99462728, -), ADediting_1376985(99462731, -), ADediting_1376986(99462978, -), ADediting_1376987(99463573, -), ADediting_1376988(99463676, -), ADediting_1376989(99463693, -), ADediting_1376990(99463694, -), ADediting_1376991(99463700, -), ADediting_1376992(99463735, -), ADediting_1376993(99464611, -), ADediting_1376994(99465885, -), ADediting_1589240(99461374, -), ADediting_1589241(99461779, -), ADediting_1589242(99463521, -), ADediting_1589243(99463713, -), ADediting_1589244(99463737, -), ADediting_1589245(99464541, -), ADediting_1667626(99461876, -), |
Top |
RNA editing positional annotations for ATP5MF using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_1376932 | chr7_99459548_- | intronic |
| ADediting_1376933 | chr7_99459626_- | intronic |
| ADediting_1376934 | chr7_99461302_- | intronic |
| ADediting_1376935 | chr7_99461312_- | intronic |
| ADediting_1376936 | chr7_99461321_- | intronic |
| ADediting_1376937 | chr7_99461325_- | intronic |
| ADediting_1376938 | chr7_99461334_- | intronic |
| ADediting_1376939 | chr7_99461348_- | intronic |
| ADediting_1376940 | chr7_99461626_- | intronic |
| ADediting_1376941 | chr7_99461627_- | intronic |
| ADediting_1376942 | chr7_99461641_- | intronic |
| ADediting_1376943 | chr7_99461721_- | intronic |
| ADediting_1376944 | chr7_99461751_- | intronic |
| ADediting_1376945 | chr7_99461782_- | intronic |
| ADediting_1376946 | chr7_99461786_- | intronic |
| ADediting_1376947 | chr7_99461790_- | intronic |
| ADediting_1376948 | chr7_99461796_- | intronic |
| ADediting_1376949 | chr7_99461804_- | intronic |
| ADediting_1376950 | chr7_99461822_- | intronic |
| ADediting_1376951 | chr7_99461851_- | intronic |
| ADediting_1376952 | chr7_99461861_- | intronic |
| ADediting_1376953 | chr7_99461862_- | intronic |
| ADediting_1376954 | chr7_99461885_- | intronic |
| ADediting_1376955 | chr7_99461900_- | intronic |
| ADediting_1376956 | chr7_99461930_- | intronic |
| ADediting_1376957 | chr7_99461931_- | intronic |
| ADediting_1376958 | chr7_99462196_- | intronic |
| ADediting_1376959 | chr7_99462218_- | intronic |
| ADediting_1376960 | chr7_99462234_- | intronic |
| ADediting_1376961 | chr7_99462259_- | intronic |
| ADediting_1376962 | chr7_99462263_- | intronic |
| ADediting_1376963 | chr7_99462285_- | intronic |
| ADediting_1376964 | chr7_99462346_- | intronic |
| ADediting_1376965 | chr7_99462352_- | intronic |
| ADediting_1376966 | chr7_99462356_- | intronic |
| ADediting_1376967 | chr7_99462368_- | intronic |
| ADediting_1376968 | chr7_99462405_- | intronic |
| ADediting_1376969 | chr7_99462416_- | intronic |
| ADediting_1376970 | chr7_99462421_- | intronic |
| ADediting_1376971 | chr7_99462520_- | intronic |
| ADediting_1376972 | chr7_99462583_- | intronic |
| ADediting_1376973 | chr7_99462595_- | intronic |
| ADediting_1376974 | chr7_99462609_- | intronic |
| ADediting_1376975 | chr7_99462612_- | intronic |
| ADediting_1376976 | chr7_99462645_- | intronic |
| ADediting_1376977 | chr7_99462653_- | intronic |
| ADediting_1376978 | chr7_99462663_- | intronic |
| ADediting_1376979 | chr7_99462666_- | intronic |
| ADediting_1376980 | chr7_99462675_- | intronic |
| ADediting_1376981 | chr7_99462692_- | intronic |
| ADediting_1376982 | chr7_99462699_- | intronic |
| ADediting_1376983 | chr7_99462712_- | intronic |
| ADediting_1376984 | chr7_99462728_- | intronic |
| ADediting_1376985 | chr7_99462731_- | intronic |
| ADediting_1376986 | chr7_99462978_- | intronic |
| ADediting_1376987 | chr7_99463573_- | intronic |
| ADediting_1376988 | chr7_99463676_- | intronic |
| ADediting_1376989 | chr7_99463693_- | intronic |
| ADediting_1376990 | chr7_99463694_- | intronic |
| ADediting_1376991 | chr7_99463700_- | intronic |
| ADediting_1376992 | chr7_99463735_- | intronic |
| ADediting_1376993 | chr7_99464611_- | intronic |
| ADediting_1376994 | chr7_99465885_- | intronic |
| ADediting_1589240 | chr7_99461374_- | intronic |
| ADediting_1589241 | chr7_99461779_- | intronic |
| ADediting_1589242 | chr7_99463521_- | intronic |
| ADediting_1589243 | chr7_99463713_- | intronic |
| ADediting_1589244 | chr7_99463737_- | intronic |
| ADediting_1589245 | chr7_99464541_- | intronic |
| ADediting_1667626 | chr7_99461876_- | intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_1376932 | chr7_99459548_- | SINE | Alu | Name=AluJo |
| ADediting_1376933 | chr7_99459626_- | SINE | Alu | Name=AluJo |
| ADediting_1376934 | chr7_99461302_- | SINE | Alu | Name=FAM |
| ADediting_1376935 | chr7_99461312_- | SINE | Alu | Name=FAM |
| ADediting_1376936 | chr7_99461321_- | SINE | Alu | Name=FAM |
| ADediting_1376937 | chr7_99461325_- | SINE | Alu | Name=FAM |
| ADediting_1376938 | chr7_99461334_- | SINE | Alu | Name=FAM |
| ADediting_1376939 | chr7_99461348_- | SINE | Alu | Name=FAM |
| ADediting_1376940 | chr7_99461626_- | SINE | Alu | Name=AluSz |
| ADediting_1376941 | chr7_99461627_- | SINE | Alu | Name=AluSz |
| ADediting_1376942 | chr7_99461641_- | SINE | Alu | Name=AluSz |
| ADediting_1376943 | chr7_99461721_- | SINE | Alu | Name=AluSx |
| ADediting_1376944 | chr7_99461751_- | SINE | Alu | Name=AluSx |
| ADediting_1376945 | chr7_99461782_- | SINE | Alu | Name=AluSx |
| ADediting_1376946 | chr7_99461786_- | SINE | Alu | Name=AluSx |
| ADediting_1376947 | chr7_99461790_- | SINE | Alu | Name=AluSx |
| ADediting_1376948 | chr7_99461796_- | SINE | Alu | Name=AluSx |
| ADediting_1376949 | chr7_99461804_- | SINE | Alu | Name=AluSx |
| ADediting_1376950 | chr7_99461822_- | SINE | Alu | Name=AluSx |
| ADediting_1376951 | chr7_99461851_- | SINE | Alu | Name=AluSx |
| ADediting_1376952 | chr7_99461861_- | SINE | Alu | Name=AluSx |
| ADediting_1376953 | chr7_99461862_- | SINE | Alu | Name=AluSx |
| ADediting_1376954 | chr7_99461885_- | SINE | Alu | Name=AluSx |
| ADediting_1376955 | chr7_99461900_- | SINE | Alu | Name=AluSx |
| ADediting_1376956 | chr7_99461930_- | SINE | Alu | Name=AluSx |
| ADediting_1376957 | chr7_99461931_- | SINE | Alu | Name=AluSx |
| ADediting_1376958 | chr7_99462196_- | SINE | Alu | Name=AluY |
| ADediting_1376959 | chr7_99462218_- | SINE | Alu | Name=AluY |
| ADediting_1376960 | chr7_99462234_- | SINE | Alu | Name=AluY |
| ADediting_1376961 | chr7_99462259_- | SINE | Alu | Name=AluY |
| ADediting_1376962 | chr7_99462263_- | SINE | Alu | Name=AluY |
| ADediting_1376963 | chr7_99462285_- | SINE | Alu | Name=AluY |
| ADediting_1376964 | chr7_99462346_- | SINE | Alu | Name=AluY |
| ADediting_1376965 | chr7_99462352_- | SINE | Alu | Name=AluY |
| ADediting_1376966 | chr7_99462356_- | SINE | Alu | Name=AluY |
| ADediting_1376967 | chr7_99462368_- | SINE | Alu | Name=AluY |
| ADediting_1376968 | chr7_99462405_- | SINE | Alu | Name=AluY |
| ADediting_1376969 | chr7_99462416_- | SINE | Alu | Name=AluY |
| ADediting_1376970 | chr7_99462421_- | SINE | Alu | Name=AluY |
| ADediting_1376971 | chr7_99462520_- | SINE | Alu | Name=AluSg |
| ADediting_1376972 | chr7_99462583_- | SINE | Alu | Name=AluSg |
| ADediting_1376973 | chr7_99462595_- | SINE | Alu | Name=AluSg |
| ADediting_1376974 | chr7_99462609_- | SINE | Alu | Name=AluSg |
| ADediting_1376975 | chr7_99462612_- | SINE | Alu | Name=AluSg |
| ADediting_1376976 | chr7_99462645_- | SINE | Alu | Name=AluSg |
| ADediting_1376977 | chr7_99462653_- | SINE | Alu | Name=AluSg |
| ADediting_1376978 | chr7_99462663_- | SINE | Alu | Name=AluSg |
| ADediting_1376979 | chr7_99462666_- | SINE | Alu | Name=AluSg |
| ADediting_1376980 | chr7_99462675_- | SINE | Alu | Name=AluSg |
| ADediting_1376981 | chr7_99462692_- | SINE | Alu | Name=AluSg |
| ADediting_1376982 | chr7_99462699_- | SINE | Alu | Name=AluSg |
| ADediting_1376983 | chr7_99462712_- | SINE | Alu | Name=AluSg |
| ADediting_1376984 | chr7_99462728_- | SINE | Alu | Name=AluSg |
| ADediting_1376985 | chr7_99462731_- | SINE | Alu | Name=AluSg |
| ADediting_1376986 | chr7_99462978_- | SINE | MIR | Name=MIRb |
| ADediting_1376987 | chr7_99463573_- | SINE | Alu | Name=AluSq2 |
| ADediting_1376988 | chr7_99463676_- | SINE | Alu | Name=AluSq2 |
| ADediting_1376989 | chr7_99463693_- | SINE | Alu | Name=AluSq2 |
| ADediting_1376990 | chr7_99463694_- | SINE | Alu | Name=AluSq2 |
| ADediting_1376991 | chr7_99463700_- | SINE | Alu | Name=AluSq2 |
| ADediting_1376992 | chr7_99463735_- | SINE | Alu | Name=AluSq2 |
| ADediting_1376993 | chr7_99464611_- | SINE | Alu | Name=AluYf1 |
| ADediting_1589241 | chr7_99461779_- | SINE | Alu | Name=AluSx |
| ADediting_1589242 | chr7_99463521_- | SINE | Alu | Name=AluSq2 |
| ADediting_1589243 | chr7_99463713_- | SINE | Alu | Name=AluSq2 |
| ADediting_1589244 | chr7_99463737_- | SINE | Alu | Name=AluSq2 |
| ADediting_1589245 | chr7_99464541_- | SINE | Alu | Name=AluYf1 |
| ADediting_1667626 | chr7_99461876_- | SINE | Alu | Name=AluSx |
Top |
RNA A-to-I editing events in the alternative splicing sites for ATP5MF |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for ATP5MF |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |