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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for RPL23 |
 Gene summary |
| Gene information | Gene symbol | RPL23 | Gene ID | 9349 |
| Gene name | ribosomal protein L23 | |
| Synonyms | L23|rpL17 | |
| Cytomap | 17q12 | |
| Type of gene | protein-coding | |
| Description | 60S ribosomal protein L2360S ribosomal protein L17large ribosomal subunit protein uL14ribosomal protein L17 | |
| Modification date | 20200313 | |
| UniProtAcc | P62829, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
| RPL23 | GO:0032986 | protein-DNA complex disassembly | 19160485 |
| RPL23 | GO:1904667 | negative regulation of ubiquitin protein ligase activity | 15314173 |
| RPL23 | GO:2000059 | negative regulation of ubiquitin-dependent protein catabolic process | 15314173 |
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RNA A-to-I events for RPL23 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_615290(38848350, -), ADediting_615291(38848354, -), ADediting_615292(38848367, -), ADediting_615293(38848371, -), ADediting_615294(38848376, -), ADediting_615295(38848377, -), ADediting_615296(38848384, -), ADediting_615297(38848394, -), ADediting_615298(38848402, -), ADediting_615299(38848407, -), ADediting_615300(38848410, -), ADediting_615301(38848421, -), ADediting_615302(38848426, -), ADediting_615303(38848436, -), ADediting_615304(38848449, -), ADediting_615305(38848451, -), ADediting_615306(38848460, -), ADediting_615307(38848465, -), ADediting_615308(38848483, -), ADediting_615309(38849474, -), ADediting_615310(38849502, -), ADediting_615311(38849505, -), ADediting_615312(38849506, -), ADediting_615313(38849507, -), ADediting_615314(38849508, -), ADediting_615315(38849509, -), ADediting_615316(38849511, -), ADediting_615317(38849513, -), ADediting_615318(38849514, -), ADediting_615319(38849515, -), ADediting_615320(38849531, -), ADediting_615321(38849532, -), ADediting_615322(38849557, -), ADediting_615323(38849582, -), ADediting_615324(38849586, -), ADediting_615325(38849587, -), ADediting_615326(38849608, -), ADediting_615327(38849615, -), ADediting_615328(38849622, -), ADediting_615329(38849890, -), ADediting_615330(38849903, -), ADediting_615331(38849917, -), ADediting_615332(38849925, -), ADediting_615333(38849946, -), ADediting_615334(38849961, -), ADediting_615335(38849970, -), ADediting_615336(38849990, -), ADediting_615337(38849996, -), ADediting_615338(38850006, -), ADediting_615339(38850009, -), ADediting_615340(38850010, -), ADediting_615341(38850018, -), ADediting_615342(38850035, -), ADediting_615343(38850036, -), ADediting_615344(38850043, -), ADediting_1546239(38848506, -), ADediting_1546240(38849924, -), |
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RNA editing positional annotations for RPL23 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_615290 | chr17_38848350_- | UTR3 |
| ADediting_615291 | chr17_38848354_- | UTR3 |
| ADediting_615292 | chr17_38848367_- | UTR3 |
| ADediting_615293 | chr17_38848371_- | UTR3 |
| ADediting_615294 | chr17_38848376_- | UTR3 |
| ADediting_615295 | chr17_38848377_- | UTR3 |
| ADediting_615296 | chr17_38848384_- | UTR3 |
| ADediting_615297 | chr17_38848394_- | UTR3 |
| ADediting_615298 | chr17_38848402_- | UTR3 |
| ADediting_615299 | chr17_38848407_- | UTR3 |
| ADediting_615300 | chr17_38848410_- | UTR3 |
| ADediting_615301 | chr17_38848421_- | UTR3 |
| ADediting_615302 | chr17_38848426_- | UTR3 |
| ADediting_615303 | chr17_38848436_- | UTR3 |
| ADediting_615304 | chr17_38848449_- | UTR3 |
| ADediting_615305 | chr17_38848451_- | UTR3 |
| ADediting_615306 | chr17_38848460_- | UTR3 |
| ADediting_615307 | chr17_38848465_- | UTR3 |
| ADediting_615308 | chr17_38848483_- | UTR3 |
| ADediting_615309 | chr17_38849474_- | UTR3 |
| ADediting_615310 | chr17_38849502_- | UTR3 |
| ADediting_615311 | chr17_38849505_- | UTR3 |
| ADediting_615312 | chr17_38849506_- | UTR3 |
| ADediting_615313 | chr17_38849507_- | UTR3 |
| ADediting_615314 | chr17_38849508_- | UTR3 |
| ADediting_615315 | chr17_38849509_- | UTR3 |
| ADediting_615316 | chr17_38849511_- | UTR3 |
| ADediting_615317 | chr17_38849513_- | UTR3 |
| ADediting_615318 | chr17_38849514_- | UTR3 |
| ADediting_615319 | chr17_38849515_- | UTR3 |
| ADediting_615320 | chr17_38849531_- | UTR3 |
| ADediting_615321 | chr17_38849532_- | UTR3 |
| ADediting_615322 | chr17_38849557_- | UTR3 |
| ADediting_615323 | chr17_38849582_- | UTR3 |
| ADediting_615324 | chr17_38849586_- | UTR3 |
| ADediting_615325 | chr17_38849587_- | UTR3 |
| ADediting_615326 | chr17_38849608_- | UTR3 |
| ADediting_615327 | chr17_38849615_- | UTR3 |
| ADediting_615328 | chr17_38849622_- | UTR3 |
| ADediting_615329 | chr17_38849890_- | UTR3 |
| ADediting_615330 | chr17_38849903_- | UTR3 |
| ADediting_615331 | chr17_38849917_- | UTR3 |
| ADediting_615332 | chr17_38849925_- | UTR3 |
| ADediting_615333 | chr17_38849946_- | UTR3 |
| ADediting_615334 | chr17_38849961_- | UTR3 |
| ADediting_615335 | chr17_38849970_- | UTR3 |
| ADediting_615336 | chr17_38849990_- | UTR3 |
| ADediting_615337 | chr17_38849996_- | UTR3 |
| ADediting_615338 | chr17_38850006_- | UTR3 |
| ADediting_615339 | chr17_38850009_- | UTR3 |
| ADediting_615340 | chr17_38850010_- | UTR3 |
| ADediting_615341 | chr17_38850018_- | UTR3 |
| ADediting_615342 | chr17_38850035_- | UTR3 |
| ADediting_615343 | chr17_38850036_- | UTR3 |
| ADediting_615344 | chr17_38850043_- | UTR3 |
| ADediting_1546239 | chr17_38848506_- | UTR3 |
| ADediting_1546240 | chr17_38849924_- | UTR3 |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_615290 | chr17_38848350_- | SINE | Alu | Name=AluSx |
| ADediting_615291 | chr17_38848354_- | SINE | Alu | Name=AluSx |
| ADediting_615292 | chr17_38848367_- | SINE | Alu | Name=AluSx |
| ADediting_615293 | chr17_38848371_- | SINE | Alu | Name=AluSx |
| ADediting_615294 | chr17_38848376_- | SINE | Alu | Name=AluSx |
| ADediting_615295 | chr17_38848377_- | SINE | Alu | Name=AluSx |
| ADediting_615296 | chr17_38848384_- | SINE | Alu | Name=AluSx |
| ADediting_615297 | chr17_38848394_- | SINE | Alu | Name=AluSx |
| ADediting_615298 | chr17_38848402_- | SINE | Alu | Name=AluSx |
| ADediting_615299 | chr17_38848407_- | SINE | Alu | Name=AluSx |
| ADediting_615300 | chr17_38848410_- | SINE | Alu | Name=AluSx |
| ADediting_615301 | chr17_38848421_- | SINE | Alu | Name=AluSx |
| ADediting_615302 | chr17_38848426_- | SINE | Alu | Name=AluSx |
| ADediting_615303 | chr17_38848436_- | SINE | Alu | Name=AluSx |
| ADediting_615304 | chr17_38848449_- | SINE | Alu | Name=AluSx |
| ADediting_615305 | chr17_38848451_- | SINE | Alu | Name=AluSx |
| ADediting_615306 | chr17_38848460_- | SINE | Alu | Name=AluSx |
| ADediting_615307 | chr17_38848465_- | SINE | Alu | Name=AluSx |
| ADediting_615308 | chr17_38848483_- | SINE | Alu | Name=AluSx |
| ADediting_615309 | chr17_38849474_- | SINE | Alu | Name=AluSg |
| ADediting_615310 | chr17_38849502_- | SINE | Alu | Name=AluSg |
| ADediting_615311 | chr17_38849505_- | SINE | Alu | Name=AluSg |
| ADediting_615312 | chr17_38849506_- | SINE | Alu | Name=AluSg |
| ADediting_615313 | chr17_38849507_- | SINE | Alu | Name=AluSg |
| ADediting_615314 | chr17_38849508_- | SINE | Alu | Name=AluSg |
| ADediting_615315 | chr17_38849509_- | SINE | Alu | Name=AluSg |
| ADediting_615316 | chr17_38849511_- | SINE | Alu | Name=AluSg |
| ADediting_615317 | chr17_38849513_- | SINE | Alu | Name=AluSg |
| ADediting_615318 | chr17_38849514_- | SINE | Alu | Name=AluSg |
| ADediting_615319 | chr17_38849515_- | SINE | Alu | Name=AluSg |
| ADediting_615320 | chr17_38849531_- | SINE | Alu | Name=AluSg |
| ADediting_615321 | chr17_38849532_- | SINE | Alu | Name=AluSg |
| ADediting_615322 | chr17_38849557_- | SINE | Alu | Name=AluSg |
| ADediting_615323 | chr17_38849582_- | SINE | Alu | Name=AluSg |
| ADediting_615324 | chr17_38849586_- | SINE | Alu | Name=AluSg |
| ADediting_615325 | chr17_38849587_- | SINE | Alu | Name=AluSg |
| ADediting_615326 | chr17_38849608_- | SINE | Alu | Name=AluSg |
| ADediting_615327 | chr17_38849615_- | SINE | Alu | Name=AluSg |
| ADediting_615328 | chr17_38849622_- | SINE | Alu | Name=AluSg |
| ADediting_615329 | chr17_38849890_- | SINE | Alu | Name=AluSx |
| ADediting_615330 | chr17_38849903_- | SINE | Alu | Name=AluSx |
| ADediting_615331 | chr17_38849917_- | SINE | Alu | Name=AluSx |
| ADediting_615332 | chr17_38849925_- | SINE | Alu | Name=AluSx |
| ADediting_615333 | chr17_38849946_- | SINE | Alu | Name=AluSx |
| ADediting_615334 | chr17_38849961_- | SINE | Alu | Name=AluSx |
| ADediting_615335 | chr17_38849970_- | SINE | Alu | Name=AluSx |
| ADediting_615336 | chr17_38849990_- | SINE | Alu | Name=AluSx |
| ADediting_615337 | chr17_38849996_- | SINE | Alu | Name=AluSx |
| ADediting_615338 | chr17_38850006_- | SINE | Alu | Name=AluSx |
| ADediting_615339 | chr17_38850009_- | SINE | Alu | Name=AluSx |
| ADediting_615340 | chr17_38850010_- | SINE | Alu | Name=AluSx |
| ADediting_615341 | chr17_38850018_- | SINE | Alu | Name=AluSx |
| ADediting_615342 | chr17_38850035_- | SINE | Alu | Name=AluSx |
| ADediting_615343 | chr17_38850036_- | SINE | Alu | Name=AluSx |
| ADediting_615344 | chr17_38850043_- | SINE | Alu | Name=AluSx |
| ADediting_1546239 | chr17_38848506_- | SINE | Alu | Name=AluSx |
| ADediting_1546240 | chr17_38849924_- | SINE | Alu | Name=AluSx |
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RNA A-to-I editing events in the alternative splicing sites for RPL23 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RPL23 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |