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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited versus non-edited samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with AD stages

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Related drugs with this gene

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Related diseases with this gene


Gene summary for RFT1

check button Gene summary
Gene informationGene symbol

RFT1

Gene ID

91869

Gene nameRFT1 homolog
SynonymsCDG1N
Cytomap

3p21.1

Type of geneprotein-coding
Descriptionprotein RFT1 homologRFT1, requiring fifty three 1 homologcongenital disorder of glycosylation 1Nputative endoplasmic reticulum multispan transmembrane protein
Modification date20200313
UniProtAcc

Q96AA3,

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for RFT1

check buttonRNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
all structure

check button RNA editing frequencies across three data sets.
boxplot

check buttonThe number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
boxplot

check button RNA A-to-I editing events in AD.
ADediting_1083642(53088609, -), ADediting_1083643(53088626, -), ADediting_1083644(53088666, -), ADediting_1083645(53088678, -), ADediting_1083646(53088679, -), ADediting_1083647(53088685, -), ADediting_1083648(53088686, -), ADediting_1083649(53088710, -), ADediting_1083650(53088712, -), ADediting_1083651(53088751, -), ADediting_1083652(53088777, -), ADediting_1083653(53088782, -), ADediting_1083654(53088832, -), ADediting_1083655(53088902, -), ADediting_1083656(53089013, -), ADediting_1083657(53096420, -), ADediting_1083658(53096477, -), ADediting_1083659(53096621, -), ADediting_1083660(53096626, -), ADediting_1083661(53096636, -), ADediting_1083662(53096647, -), ADediting_1083663(53107409, -), ADediting_1083664(53108079, -), ADediting_1083665(53108553, -), ADediting_1083666(53108833, -), ADediting_1083667(53109553, -), ADediting_1083668(53109565, -), ADediting_1083669(53109638, -), ADediting_1083670(53109644, -), ADediting_1083671(53109660, -), ADediting_1083672(53109662, -), ADediting_1083673(53109663, -), ADediting_1083674(53109708, -), ADediting_1083675(53109721, -), ADediting_1083676(53109782, -), ADediting_1083677(53109794, -), ADediting_1083678(53109802, -), ADediting_1083679(53111330, -), ADediting_1083680(53111370, -), ADediting_1083681(53116490, -), ADediting_1083682(53116739, -), ADediting_1083683(53116740, -), ADediting_1083684(53119014, -), ADediting_1648180(53128170, -), ADediting_1648181(53128174, -), ADediting_1648182(53128176, -), ADediting_1648183(53128190, -), ADediting_1648184(53128216, -),

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RNA editing positional annotations for RFT1 using Annovar

check button Protein coding RNA editing(s).
ADeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
ADeditome IDPositionVariant type
ADediting_1083642chr3_53088609_-UTR3
ADediting_1083643chr3_53088626_-UTR3
ADediting_1083644chr3_53088666_-UTR3
ADediting_1083645chr3_53088678_-UTR3
ADediting_1083646chr3_53088679_-UTR3
ADediting_1083647chr3_53088685_-UTR3
ADediting_1083648chr3_53088686_-UTR3
ADediting_1083649chr3_53088710_-UTR3
ADediting_1083650chr3_53088712_-UTR3
ADediting_1083651chr3_53088751_-UTR3
ADediting_1083652chr3_53088777_-UTR3
ADediting_1083653chr3_53088782_-UTR3
ADediting_1083654chr3_53088832_-UTR3
ADediting_1083655chr3_53088902_-UTR3
ADediting_1083656chr3_53089013_-UTR3
ADediting_1083657chr3_53096420_-intronic
ADediting_1083658chr3_53096477_-intronic
ADediting_1083659chr3_53096621_-intronic
ADediting_1083660chr3_53096626_-intronic
ADediting_1083661chr3_53096636_-intronic
ADediting_1083662chr3_53096647_-intronic
ADediting_1083663chr3_53107409_-intronic
ADediting_1083664chr3_53108079_-intronic
ADediting_1083665chr3_53108553_-intronic
ADediting_1083666chr3_53108833_-intronic
ADediting_1083667chr3_53109553_-intronic
ADediting_1083668chr3_53109565_-intronic
ADediting_1083669chr3_53109638_-intronic
ADediting_1083670chr3_53109644_-intronic
ADediting_1083671chr3_53109660_-intronic
ADediting_1083672chr3_53109662_-intronic
ADediting_1083673chr3_53109663_-intronic
ADediting_1083674chr3_53109708_-intronic
ADediting_1083675chr3_53109721_-intronic
ADediting_1083676chr3_53109782_-intronic
ADediting_1083677chr3_53109794_-intronic
ADediting_1083678chr3_53109802_-intronic
ADediting_1083679chr3_53111330_-intronic
ADediting_1083680chr3_53111370_-intronic
ADediting_1083681chr3_53116490_-intronic
ADediting_1083682chr3_53116739_-intronic
ADediting_1083683chr3_53116740_-intronic
ADediting_1083684chr3_53119014_-intronic
ADediting_1648180chr3_53128170_-intronic
ADediting_1648181chr3_53128174_-intronic
ADediting_1648182chr3_53128176_-intronic
ADediting_1648183chr3_53128190_-intronic
ADediting_1648184chr3_53128216_-intronic

check button Repat-regional RNA editing(s).
ADeditome IDPositionRepeat familyRepeat sub familyRepeat name
ADediting_1083642chr3_53088609_-SINEAluName=AluJr
ADediting_1083643chr3_53088626_-SINEAluName=AluJr
ADediting_1083644chr3_53088666_-SINEAluName=AluJr
ADediting_1083645chr3_53088678_-SINEAluName=AluJr
ADediting_1083646chr3_53088679_-SINEAluName=AluJr
ADediting_1083647chr3_53088685_-SINEAluName=AluJr
ADediting_1083648chr3_53088686_-SINEAluName=AluJr
ADediting_1083649chr3_53088710_-SINEAluName=AluJr
ADediting_1083650chr3_53088712_-SINEAluName=AluJr
ADediting_1083651chr3_53088751_-SINEAluName=AluJr
ADediting_1083652chr3_53088777_-SINEAluName=AluJr
ADediting_1083653chr3_53088782_-SINEAluName=AluJr
ADediting_1083654chr3_53088832_-SINEAluName=AluJr
ADediting_1083655chr3_53088902_-SINEAluName=AluSx4
ADediting_1083656chr3_53089013_-SINEAluName=AluSx4
ADediting_1083657chr3_53096420_-SINEAluName=AluSx
ADediting_1083658chr3_53096477_-SINEAluName=AluSx
ADediting_1083659chr3_53096621_-SINEAluName=AluSx
ADediting_1083660chr3_53096626_-SINEAluName=AluSx
ADediting_1083661chr3_53096636_-SINEAluName=AluSx
ADediting_1083662chr3_53096647_-SINEAluName=AluSx
ADediting_1083663chr3_53107409_-SINEAluName=AluYj4
ADediting_1083664chr3_53108079_-SINEAluName=AluSx1
ADediting_1083665chr3_53108553_-SINEAluName=AluSx1
ADediting_1083666chr3_53108833_-SINEAluName=AluSq2
ADediting_1083667chr3_53109553_-SINEAluName=AluJr
ADediting_1083668chr3_53109565_-SINEAluName=AluJr
ADediting_1083669chr3_53109638_-SINEAluName=AluJr
ADediting_1083670chr3_53109644_-SINEAluName=AluJr
ADediting_1083671chr3_53109660_-SINEAluName=AluJr
ADediting_1083672chr3_53109662_-SINEAluName=AluJr
ADediting_1083673chr3_53109663_-SINEAluName=AluJr
ADediting_1083674chr3_53109708_-SINEAluName=AluJr
ADediting_1083675chr3_53109721_-SINEAluName=AluJr
ADediting_1083676chr3_53109782_-SINEAluName=AluJr
ADediting_1083677chr3_53109794_-SINEAluName=AluJr
ADediting_1083678chr3_53109802_-SINEAluName=AluJr
ADediting_1083679chr3_53111330_-SINEAluName=AluY
ADediting_1083680chr3_53111370_-SINEAluName=AluY
ADediting_1083681chr3_53116490_-SINEAluName=AluJb
ADediting_1083682chr3_53116739_-SINEAluName=AluSz
ADediting_1083683chr3_53116740_-SINEAluName=AluSz
ADediting_1083684chr3_53119014_-SINEAluName=AluJo
ADediting_1648180chr3_53128170_-SINEAluName=AluSx1
ADediting_1648181chr3_53128174_-SINEAluName=AluSx1
ADediting_1648182chr3_53128176_-SINEAluName=AluSx1
ADediting_1648183chr3_53128190_-SINEAluName=AluSx1
ADediting_1648184chr3_53128216_-SINEAluName=AluSx1

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RNA A-to-I editing events in the alternative splicing sites for RFT1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeADeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RFT1

check button Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

check button Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.
boxplot
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

check button - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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ADeditome IDChrPositoingSkipped exonENSGENSTs

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Protein coding region RNA A-to-I editings for RFT1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for RFT1

check buttonRNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
all structure

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1083642chr3_53088609_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-6089chr353088604530886107mer-m85308860353088625168-39.94
ADediting_1083643chr3_53088626_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-1199-5pchr353088626530886327mer-m85308862553088644156-29.18
ADediting_1083643chr3_53088626_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-3622a-3pchr353088622530886298mer-1a5308862253088643148-19.86
ADediting_1083643chr3_53088626_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-3622b-3pchr353088622530886298mer-1a5308862253088642157-24.67
ADediting_1083643chr3_53088626_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-6751-3pchr353088626530886327mer-m85308862553088645141-13.48
ADediting_1083645chr3_53088678_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-548ae-3pchr353088673530886797mer-m85308867253088693161-7.29
ADediting_1083645chr3_53088678_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-548ah-3pchr353088673530886797mer-m85308867253088694157-7.72
ADediting_1083645chr3_53088678_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-548aj-3pchr353088673530886797mer-m85308867253088693161-8.19
ADediting_1083645chr3_53088678_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-548am-3pchr353088673530886797mer-m85308867253088694157-7.5
ADediting_1083645chr3_53088678_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-548aq-3pchr353088673530886797mer-m85308867253088694161-7.51
ADediting_1083645chr3_53088678_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-548j-3pchr353088673530886797mer-m85308867253088694148-6.11
ADediting_1083645chr3_53088678_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-548x-3pchr353088673530886797mer-m85308867253088692161-8.19
ADediting_1083645chr3_53088678_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-6508-5pchr353088678530886847mer-m85308867753088697145-10.17
ADediting_1083645chr3_53088678_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-708-3pchr353088676530886827mer-m85308867553088695151-11.11
ADediting_1083645chr3_53088678_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-7844-5pchr353088675530886817mer-m85308867453088697155-17.3
ADediting_1083645chr3_53088678_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-8067chr353088678530886847mer-m85308867753088698143-7.42
ADediting_1083646chr3_53088679_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-2115-3pchr353088677530886837mer-m85308867653088699146-13.83
ADediting_1083647chr3_53088685_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-4661-5pchr353088684530886907mer-m85308868353088704150-16.11
ADediting_1083647chr3_53088685_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-7844-5pchr353088682530886887mer-m85308868153088700157-16.63
ADediting_1083648chr3_53088686_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-1207-3pchr353088685530886928mer-1a5308868553088702140-14.68
ADediting_1083648chr3_53088686_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-34a-3pchr353088683530886897mer-m85308868253088703140-8.12
ADediting_1083651chr3_53088751_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-1199-5pchr353088751530887577mer-m85308875053088769156-28.57
ADediting_1083651chr3_53088751_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-6751-3pchr353088751530887577mer-m85308875053088770141-13.15
ADediting_1083652chr3_53088777_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-891a-5pchr353088772530887798mer-1a5308877253088795154-18.68
ADediting_1083653chr3_53088782_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-6807-5pchr353088777530887837mer-m85308877653088794144-16.13
ADediting_1083654chr3_53088832_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-10a-5pchr353088829530888357mer-m85308882853088848146-14.31
ADediting_1083654chr3_53088832_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-10b-5pchr353088829530888357mer-m85308882853088853144-13.79
ADediting_1083654chr3_53088832_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-339-5pchr353088830530888367mer-m85308882953088851149-18.42
ADediting_1083654chr3_53088832_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-4725-5pchr353088828530888347mer-m85308882753088847140-16.68
ADediting_1083654chr3_53088832_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-504-5pchr353088828530888347mer-m85308882753088849150-21.61
ADediting_1083654chr3_53088832_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-5699-3pchr353088831530888377mer-m85308883053088851146-17.3
ADediting_1083656chr3_53089013_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-1184chr353089010530890167mer-m85308900953089029142-19.51
ADediting_1083656chr3_53089013_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-7156-3pchr353089011530890177mer-m85308901053089038148-28.62

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1083642chr3_53088609_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-4478chr353088605530886117mer-m85308860453088622150-25.92
ADediting_1083642chr3_53088609_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-4649-3pchr353088608530886147mer-m85308860753088627140-14.11
ADediting_1083642chr3_53088609_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-485-5pchr353088604530886107mer-m85308860353088625153-16.98
ADediting_1083642chr3_53088609_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-7160-5pchr353088607530886137mer-m85308860653088626146-17.63
ADediting_1083644chr3_53088666_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-4684-5pchr353088662530886687mer-m85308866153088682143-8.1
ADediting_1083644chr3_53088666_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-519a-2-5pchr353088662530886698mer-1a5308866253088682154-14.62
ADediting_1083644chr3_53088666_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-520b-5pchr353088662530886698mer-1a5308866253088682154-14.62
ADediting_1083649chr3_53088710_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-4679chr353088709530887157mer-m85308870853088730147-15.32
ADediting_1083650chr3_53088712_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-4679chr353088709530887157mer-m85308870853088730147-15.32
ADediting_1083652chr3_53088777_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-106a-3pchr353088772530887787mer-m85308877153088790142-14.63
ADediting_1083652chr3_53088777_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-556-5pchr353088776530887827mer-m85308877553088795153-11.47
ADediting_1083655chr3_53088902_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-4478chr353088898530889047mer-m85308889753088913150-23.72
ADediting_1083655chr3_53088902_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-4649-3pchr353088901530889077mer-m85308890053088920147-14.72
ADediting_1083655chr3_53088902_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-485-5pchr353088897530889037mer-m85308889653088918149-17.54
ADediting_1083655chr3_53088902_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-6765-5pchr353088902530889087mer-m85308890153088928154-27.66
ADediting_1083655chr3_53088902_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-6884-5pchr353088897530889037mer-m85308889653088917154-23.23
ADediting_1083655chr3_53088902_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-7160-5pchr353088900530889067mer-m85308889953088917154-22.76
ADediting_1083656chr3_53089013_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-3137chr353089010530890167mer-m85308900953089032149-24.55

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1471004chr9_63819627_+ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-4477bchr353089599530896068mer-1a5308959953089622143-9.98
ADediting_1535953chr14_101045971_+ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-381-3pchr353089516530895238mer-1a5308951653089537140-21.92
ADediting_1535954chr14_101045974_+ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-381-3pchr353089715530897217mer-m85308971453089733152-15.74
ADediting_1631458chr19_40282624_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-641chr353090308530903147mer-m85309030753090330157-17.27
ADediting_98288chr1_32086990_+ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-5585-3pchr353090502530905087mer-m85309050153090522150-18.13
ADediting_98288chr1_32086990_+ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-5585-3pchr353091355530913617mer-m85309135453091375145-16.54

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1337757chr7_5495852_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-589-3pchr353090796530908027mer-m85309079553090820144-21.04
ADediting_1471003chr9_63819626_+ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-4477bchr353088562530885687mer-m85308856153088583143-12.27
ADediting_1471004chr9_63819627_+ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-4477bchr353088562530885687mer-m85308856153088583143-12.27
ADediting_291761chr11_93733708_-ENSG00000163933.10ENST00000296292.8RFT1-201hsa-miR-1304-3pchr353091349530913568mer-1a5309134953091372149-17.93

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for RFT1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000296292.8protein_codingSoverviewSoverview

check button RNA A-to-I editing in miRNA.
ADeditom_IDENSTmir_IDEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in mRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
ADediting_1083642ENST00000296292.8chr3_53088609_-4955-1849.20-1849.20-1865.20
ADediting_1083643ENST00000296292.8chr3_53088626_-4938-1849.30-1849.20-1865.20
ADediting_1083644ENST00000296292.8chr3_53088666_-4898-1852.70-1849.20-1865.20
ADediting_1083645ENST00000296292.8chr3_53088678_-4886-1852.40-1849.20-1865.20
ADediting_1083646ENST00000296292.8chr3_53088679_-4885-1849.60-1849.20-1865.20
ADediting_1083647ENST00000296292.8chr3_53088685_-4879-1850.50-1849.20-1865.20
ADediting_1083648ENST00000296292.8chr3_53088686_-4878-1848.90-1849.20-1865.20
ADediting_1083649ENST00000296292.8chr3_53088710_-4854-1849.20-1849.20-1865.20
ADediting_1083650ENST00000296292.8chr3_53088712_-4852-1850.10-1849.20-1865.20
ADediting_1083651ENST00000296292.8chr3_53088751_-4813-1850.00-1849.20-1865.20
ADediting_1083652ENST00000296292.8chr3_53088777_-4787-1850.00-1849.20-1865.20
ADediting_1083653ENST00000296292.8chr3_53088782_-4782-1852.40-1849.20-1865.20
ADediting_1083654ENST00000296292.8chr3_53088832_-4732-1851.10-1849.20-1865.20
ADediting_1083655ENST00000296292.8chr3_53088902_-4662-1850.20-1849.20-1865.20
ADediting_1083656ENST00000296292.8chr3_53089013_-4551-1851.40-1849.20-1865.20

check button RNA A-to-I editing in lncRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for RFT1

check button Correlation between ADAR gene expression and RNA editing frequency
TissueADeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

check button Correlation between ADAR gene expression and this gene's expression
TissueADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
DLPFC2.80510839106904e-590.7587067781916876.50246731154188e-280.5683078799942468.62445215167523e-210.497523221440895
AC1.373892276267e-880.8943069592455085.08241255053902e-460.747845974029471.67966869860203e-210.55387508286879
PCC1.12925273853941e-420.7937503648824117.0993607096467e-340.736167269804980.0002132124578633420.264864586486363
CER3.72874664873754e-250.718997936362731.78224535384316e-060.3785649521047890.05403814353192430.15763435447165
TCX1.65823931561454e-280.7513636778938910.000679391748489060.2743776211806017.96785970031618e-100.47527307048408
FP7.24598955193486e-360.7678106499352863.72557750595955e-160.5611512935557310.001568894397391890.235295684419016
IFG0.003633488100967470.5595607898785420.06006915487603880.3812306836942320.8768822569098190.032647809235373
PG1.54666504418362e-290.7073970278385862.44936188860747e-170.5688417714021930.2892945091477840.0781065869623192
STG1.6337953635732e-230.8402988829409333.36104062726958e-060.4824652196652430.1697231404362640.151219576814453

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Relation with AD stages for RFT1

check button Correlation between AD stages and RNA editing frequency
TissueADeditomIDpositionP-valCoeff.

check button Correlation between AD stages and this gene's expression
TissueP-valCoeff.
TCX1.20717063731135e-050.410996145174841

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RelatedDrugs for RFT1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for RFT1

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource
RFT1C0282577Congenital Disorders of Glycosylation1GENOMICS_ENGLAND
RFT1C2677590Congenital Disorder Of Glycosylation, Type In1CTD_human;ORPHANET;UNIPROT