|
||||||
|
 | |
| |
| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
| |
| |
| The effects of the RNA editing to the stability of the RNA structures |
| |
| |
| |
|
Gene summary for RFT1 |
 Gene summary |
| Gene information | Gene symbol | RFT1 | Gene ID | 91869 |
| Gene name | RFT1 homolog | |
| Synonyms | CDG1N | |
| Cytomap | 3p21.1 | |
| Type of gene | protein-coding | |
| Description | protein RFT1 homologRFT1, requiring fifty three 1 homologcongenital disorder of glycosylation 1Nputative endoplasmic reticulum multispan transmembrane protein | |
| Modification date | 20200313 | |
| UniProtAcc | Q96AA3, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
Top |
RNA A-to-I events for RFT1 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA editing frequencies across three data sets. |
 |
| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA A-to-I editing events in AD. |
| ADediting_1083642(53088609, -), ADediting_1083643(53088626, -), ADediting_1083644(53088666, -), ADediting_1083645(53088678, -), ADediting_1083646(53088679, -), ADediting_1083647(53088685, -), ADediting_1083648(53088686, -), ADediting_1083649(53088710, -), ADediting_1083650(53088712, -), ADediting_1083651(53088751, -), ADediting_1083652(53088777, -), ADediting_1083653(53088782, -), ADediting_1083654(53088832, -), ADediting_1083655(53088902, -), ADediting_1083656(53089013, -), ADediting_1083657(53096420, -), ADediting_1083658(53096477, -), ADediting_1083659(53096621, -), ADediting_1083660(53096626, -), ADediting_1083661(53096636, -), ADediting_1083662(53096647, -), ADediting_1083663(53107409, -), ADediting_1083664(53108079, -), ADediting_1083665(53108553, -), ADediting_1083666(53108833, -), ADediting_1083667(53109553, -), ADediting_1083668(53109565, -), ADediting_1083669(53109638, -), ADediting_1083670(53109644, -), ADediting_1083671(53109660, -), ADediting_1083672(53109662, -), ADediting_1083673(53109663, -), ADediting_1083674(53109708, -), ADediting_1083675(53109721, -), ADediting_1083676(53109782, -), ADediting_1083677(53109794, -), ADediting_1083678(53109802, -), ADediting_1083679(53111330, -), ADediting_1083680(53111370, -), ADediting_1083681(53116490, -), ADediting_1083682(53116739, -), ADediting_1083683(53116740, -), ADediting_1083684(53119014, -), ADediting_1648180(53128170, -), ADediting_1648181(53128174, -), ADediting_1648182(53128176, -), ADediting_1648183(53128190, -), ADediting_1648184(53128216, -), |
Top |
RNA editing positional annotations for RFT1 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_1083642 | chr3_53088609_- | UTR3 |
| ADediting_1083643 | chr3_53088626_- | UTR3 |
| ADediting_1083644 | chr3_53088666_- | UTR3 |
| ADediting_1083645 | chr3_53088678_- | UTR3 |
| ADediting_1083646 | chr3_53088679_- | UTR3 |
| ADediting_1083647 | chr3_53088685_- | UTR3 |
| ADediting_1083648 | chr3_53088686_- | UTR3 |
| ADediting_1083649 | chr3_53088710_- | UTR3 |
| ADediting_1083650 | chr3_53088712_- | UTR3 |
| ADediting_1083651 | chr3_53088751_- | UTR3 |
| ADediting_1083652 | chr3_53088777_- | UTR3 |
| ADediting_1083653 | chr3_53088782_- | UTR3 |
| ADediting_1083654 | chr3_53088832_- | UTR3 |
| ADediting_1083655 | chr3_53088902_- | UTR3 |
| ADediting_1083656 | chr3_53089013_- | UTR3 |
| ADediting_1083657 | chr3_53096420_- | intronic |
| ADediting_1083658 | chr3_53096477_- | intronic |
| ADediting_1083659 | chr3_53096621_- | intronic |
| ADediting_1083660 | chr3_53096626_- | intronic |
| ADediting_1083661 | chr3_53096636_- | intronic |
| ADediting_1083662 | chr3_53096647_- | intronic |
| ADediting_1083663 | chr3_53107409_- | intronic |
| ADediting_1083664 | chr3_53108079_- | intronic |
| ADediting_1083665 | chr3_53108553_- | intronic |
| ADediting_1083666 | chr3_53108833_- | intronic |
| ADediting_1083667 | chr3_53109553_- | intronic |
| ADediting_1083668 | chr3_53109565_- | intronic |
| ADediting_1083669 | chr3_53109638_- | intronic |
| ADediting_1083670 | chr3_53109644_- | intronic |
| ADediting_1083671 | chr3_53109660_- | intronic |
| ADediting_1083672 | chr3_53109662_- | intronic |
| ADediting_1083673 | chr3_53109663_- | intronic |
| ADediting_1083674 | chr3_53109708_- | intronic |
| ADediting_1083675 | chr3_53109721_- | intronic |
| ADediting_1083676 | chr3_53109782_- | intronic |
| ADediting_1083677 | chr3_53109794_- | intronic |
| ADediting_1083678 | chr3_53109802_- | intronic |
| ADediting_1083679 | chr3_53111330_- | intronic |
| ADediting_1083680 | chr3_53111370_- | intronic |
| ADediting_1083681 | chr3_53116490_- | intronic |
| ADediting_1083682 | chr3_53116739_- | intronic |
| ADediting_1083683 | chr3_53116740_- | intronic |
| ADediting_1083684 | chr3_53119014_- | intronic |
| ADediting_1648180 | chr3_53128170_- | intronic |
| ADediting_1648181 | chr3_53128174_- | intronic |
| ADediting_1648182 | chr3_53128176_- | intronic |
| ADediting_1648183 | chr3_53128190_- | intronic |
| ADediting_1648184 | chr3_53128216_- | intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_1083642 | chr3_53088609_- | SINE | Alu | Name=AluJr |
| ADediting_1083643 | chr3_53088626_- | SINE | Alu | Name=AluJr |
| ADediting_1083644 | chr3_53088666_- | SINE | Alu | Name=AluJr |
| ADediting_1083645 | chr3_53088678_- | SINE | Alu | Name=AluJr |
| ADediting_1083646 | chr3_53088679_- | SINE | Alu | Name=AluJr |
| ADediting_1083647 | chr3_53088685_- | SINE | Alu | Name=AluJr |
| ADediting_1083648 | chr3_53088686_- | SINE | Alu | Name=AluJr |
| ADediting_1083649 | chr3_53088710_- | SINE | Alu | Name=AluJr |
| ADediting_1083650 | chr3_53088712_- | SINE | Alu | Name=AluJr |
| ADediting_1083651 | chr3_53088751_- | SINE | Alu | Name=AluJr |
| ADediting_1083652 | chr3_53088777_- | SINE | Alu | Name=AluJr |
| ADediting_1083653 | chr3_53088782_- | SINE | Alu | Name=AluJr |
| ADediting_1083654 | chr3_53088832_- | SINE | Alu | Name=AluJr |
| ADediting_1083655 | chr3_53088902_- | SINE | Alu | Name=AluSx4 |
| ADediting_1083656 | chr3_53089013_- | SINE | Alu | Name=AluSx4 |
| ADediting_1083657 | chr3_53096420_- | SINE | Alu | Name=AluSx |
| ADediting_1083658 | chr3_53096477_- | SINE | Alu | Name=AluSx |
| ADediting_1083659 | chr3_53096621_- | SINE | Alu | Name=AluSx |
| ADediting_1083660 | chr3_53096626_- | SINE | Alu | Name=AluSx |
| ADediting_1083661 | chr3_53096636_- | SINE | Alu | Name=AluSx |
| ADediting_1083662 | chr3_53096647_- | SINE | Alu | Name=AluSx |
| ADediting_1083663 | chr3_53107409_- | SINE | Alu | Name=AluYj4 |
| ADediting_1083664 | chr3_53108079_- | SINE | Alu | Name=AluSx1 |
| ADediting_1083665 | chr3_53108553_- | SINE | Alu | Name=AluSx1 |
| ADediting_1083666 | chr3_53108833_- | SINE | Alu | Name=AluSq2 |
| ADediting_1083667 | chr3_53109553_- | SINE | Alu | Name=AluJr |
| ADediting_1083668 | chr3_53109565_- | SINE | Alu | Name=AluJr |
| ADediting_1083669 | chr3_53109638_- | SINE | Alu | Name=AluJr |
| ADediting_1083670 | chr3_53109644_- | SINE | Alu | Name=AluJr |
| ADediting_1083671 | chr3_53109660_- | SINE | Alu | Name=AluJr |
| ADediting_1083672 | chr3_53109662_- | SINE | Alu | Name=AluJr |
| ADediting_1083673 | chr3_53109663_- | SINE | Alu | Name=AluJr |
| ADediting_1083674 | chr3_53109708_- | SINE | Alu | Name=AluJr |
| ADediting_1083675 | chr3_53109721_- | SINE | Alu | Name=AluJr |
| ADediting_1083676 | chr3_53109782_- | SINE | Alu | Name=AluJr |
| ADediting_1083677 | chr3_53109794_- | SINE | Alu | Name=AluJr |
| ADediting_1083678 | chr3_53109802_- | SINE | Alu | Name=AluJr |
| ADediting_1083679 | chr3_53111330_- | SINE | Alu | Name=AluY |
| ADediting_1083680 | chr3_53111370_- | SINE | Alu | Name=AluY |
| ADediting_1083681 | chr3_53116490_- | SINE | Alu | Name=AluJb |
| ADediting_1083682 | chr3_53116739_- | SINE | Alu | Name=AluSz |
| ADediting_1083683 | chr3_53116740_- | SINE | Alu | Name=AluSz |
| ADediting_1083684 | chr3_53119014_- | SINE | Alu | Name=AluJo |
| ADediting_1648180 | chr3_53128170_- | SINE | Alu | Name=AluSx1 |
| ADediting_1648181 | chr3_53128174_- | SINE | Alu | Name=AluSx1 |
| ADediting_1648182 | chr3_53128176_- | SINE | Alu | Name=AluSx1 |
| ADediting_1648183 | chr3_53128190_- | SINE | Alu | Name=AluSx1 |
| ADediting_1648184 | chr3_53128216_- | SINE | Alu | Name=AluSx1 |
Top |
RNA A-to-I editing events in the alternative splicing sites for RFT1 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for RFT1 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
 | |
 | |
| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
 |
 |
 |
 |
 |
| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |