ADeditome: functional annotation of RNA A-to-I editing in AD

Gene summary for NXPE3

Gene summary

Gene information	Gene symbol	NXPE3
	Gene ID	91775
	Gene name	neurexophilin and PC-esterase domain family member 3
	Synonyms	FAM55C\|MST115\|MSTP115
	Cytomap	3q12.3
	Type of gene	protein-coding
	Description	NXPE family member 3family with sequence similarity 55, member C
	Modification date	20200313
	UniProtAcc	Q969Y0,
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for NXPE3

RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).

RNA editing frequencies across three data sets.

The number of RNA A-to-I editing events in different types of transcripts (# event, percentage).

RNA A-to-I editing events in AD.

ADediting_1008874(101782688, +), ADediting_1008875(101782731, +), ADediting_1008882(101787008, +), ADediting_1008883(101787108, +), ADediting_1008884(101787580, +), ADediting_1008885(101788674, +), ADediting_1008886(101788716, +), ADediting_1008887(101789288, +), ADediting_1008888(101789289, +), ADediting_1008889(101789311, +), ADediting_1008890(101789324, +), ADediting_1008891(101789362, +), ADediting_1008892(101789379, +), ADediting_1008893(101789443, +), ADediting_1008894(101789912, +), ADediting_1008895(101789926, +), ADediting_1008896(101791486, +), ADediting_1008901(101795343, +), ADediting_1008902(101795359, +), ADediting_1008903(101795360, +), ADediting_1008904(101795361, +), ADediting_1008905(101795384, +), ADediting_1008906(101795395, +), ADediting_1008907(101795397, +), ADediting_1008908(101795398, +), ADediting_1008914(101802921, +), ADediting_1008915(101802967, +), ADediting_1008916(101803640, +), ADediting_1008917(101803641, +), ADediting_1008918(101803643, +), ADediting_1008919(101803759, +), ADediting_1008920(101803803, +), ADediting_1008921(101803882, +), ADediting_1008922(101805649, +), ADediting_1008923(101811030, +), ADediting_1008924(101811068, +), ADediting_1008925(101811834, +), ADediting_1008926(101811838, +), ADediting_1008927(101812597, +), ADediting_1008928(101812602, +), ADediting_1008929(101812625, +), ADediting_1008930(101812665, +), ADediting_1008934(101823506, +), ADediting_1008935(101823511, +), ADediting_1008936(101823512, +), ADediting_1008937(101823520, +), ADediting_1008938(101823541, +), ADediting_1008939(101823545, +), ADediting_1008940(101823559, +), ADediting_1008941(101823564, +), ADediting_1008942(101823567, +), ADediting_1008943(101823578, +), ADediting_1008944(101823588, +), ADediting_1008945(101823592, +), ADediting_1008946(101823609, +), ADediting_1008947(101823612, +), ADediting_1008948(101823613, +), ADediting_1008949(101823630, +), ADediting_1008950(101823650, +), ADediting_1008951(101823657, +), ADediting_1008952(101823666, +), ADediting_1008953(101823667, +), ADediting_1008954(101823671, +), ADediting_1008955(101823685, +), ADediting_1008956(101823690, +), ADediting_1008957(101823728, +), ADediting_1008958(101826762, +), ADediting_1008959(101826778, +), ADediting_1008960(101826779, +), ADediting_1008961(101826824, +), ADediting_1008962(101826825, +), ADediting_1008963(101826832, +), ADediting_1008964(101826869, +), ADediting_1008965(101826878, +), ADediting_1008966(101826881, +), ADediting_1008967(101826882, +), ADediting_1008968(101826883, +), ADediting_1008969(101826884, +), ADediting_1008970(101826886, +), ADediting_1008971(101826890, +), ADediting_1008972(101826902, +), ADediting_1008973(101826913, +), ADediting_1008974(101826922, +), ADediting_1008975(101826953, +), ADediting_1008976(101826954, +), ADediting_1008977(101827024, +), ADediting_1643118(101787541, +), ADediting_1643119(101787567, +), ADediting_1643120(101787568, +), ADediting_1643121(101788745, +), ADediting_1643122(101788755, +), ADediting_1643123(101789731, +), ADediting_1643124(101789735, +), ADediting_1643125(101789874, +), ADediting_1643126(101789911, +), ADediting_1643127(101789913, +), ADediting_1643128(101802387, +), ADediting_1643129(101802408, +), ADediting_1643130(101803806, +), ADediting_1643131(101803894, +), ADediting_1643132(101807390, +), ADediting_1643133(101807413, +), ADediting_1643134(101811792, +), ADediting_1643135(101811859, +), ADediting_1643136(101811863, +), ADediting_1643137(101811867, +), ADediting_1643138(101811900, +), ADediting_1643139(101811901, +), ADediting_1643140(101811918, +), ADediting_1643141(101823693, +), ADediting_1643142(101826944, +),

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RNA editing positional annotations for NXPE3 using Annovar

Protein coding RNA editing(s).

ADeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

ADeditome ID	Position	Variant type
ADediting_1008874	chr3_101782688_+	UTR5
ADediting_1008875	chr3_101782731_+	UTR5
ADediting_1008882	chr3_101787008_+	intronic
ADediting_1008883	chr3_101787108_+	intronic
ADediting_1008884	chr3_101787580_+	intronic
ADediting_1008885	chr3_101788674_+	intronic
ADediting_1008886	chr3_101788716_+	intronic
ADediting_1008887	chr3_101789288_+	intronic
ADediting_1008888	chr3_101789289_+	intronic
ADediting_1008889	chr3_101789311_+	intronic
ADediting_1008890	chr3_101789324_+	intronic
ADediting_1008891	chr3_101789362_+	intronic
ADediting_1008892	chr3_101789379_+	intronic
ADediting_1008893	chr3_101789443_+	intronic
ADediting_1008894	chr3_101789912_+	intronic
ADediting_1008895	chr3_101789926_+	intronic
ADediting_1008896	chr3_101791486_+	intronic
ADediting_1008901	chr3_101795343_+	intronic
ADediting_1008902	chr3_101795359_+	intronic
ADediting_1008903	chr3_101795360_+	intronic
ADediting_1008904	chr3_101795361_+	intronic
ADediting_1008905	chr3_101795384_+	intronic
ADediting_1008906	chr3_101795395_+	intronic
ADediting_1008907	chr3_101795397_+	intronic
ADediting_1008908	chr3_101795398_+	intronic
ADediting_1008914	chr3_101802921_+	intronic
ADediting_1008915	chr3_101802967_+	intronic
ADediting_1008916	chr3_101803640_+	intronic
ADediting_1008917	chr3_101803641_+	intronic
ADediting_1008918	chr3_101803643_+	intronic
ADediting_1008919	chr3_101803759_+	intronic
ADediting_1008920	chr3_101803803_+	intronic
ADediting_1008921	chr3_101803882_+	intronic
ADediting_1008922	chr3_101805649_+	intronic
ADediting_1008923	chr3_101811030_+	intronic
ADediting_1008924	chr3_101811068_+	intronic
ADediting_1008925	chr3_101811834_+	intronic
ADediting_1008926	chr3_101811838_+	intronic
ADediting_1008927	chr3_101812597_+	intronic
ADediting_1008928	chr3_101812602_+	intronic
ADediting_1008929	chr3_101812625_+	intronic
ADediting_1008930	chr3_101812665_+	intronic
ADediting_1008934	chr3_101823506_+	UTR3
ADediting_1008935	chr3_101823511_+	UTR3
ADediting_1008936	chr3_101823512_+	UTR3
ADediting_1008937	chr3_101823520_+	UTR3
ADediting_1008938	chr3_101823541_+	UTR3
ADediting_1008939	chr3_101823545_+	UTR3
ADediting_1008940	chr3_101823559_+	UTR3
ADediting_1008941	chr3_101823564_+	UTR3
ADediting_1008942	chr3_101823567_+	UTR3
ADediting_1008943	chr3_101823578_+	UTR3
ADediting_1008944	chr3_101823588_+	UTR3
ADediting_1008945	chr3_101823592_+	UTR3
ADediting_1008946	chr3_101823609_+	UTR3
ADediting_1008947	chr3_101823612_+	UTR3
ADediting_1008948	chr3_101823613_+	UTR3
ADediting_1008949	chr3_101823630_+	UTR3
ADediting_1008950	chr3_101823650_+	UTR3
ADediting_1008951	chr3_101823657_+	UTR3
ADediting_1008952	chr3_101823666_+	UTR3
ADediting_1008953	chr3_101823667_+	UTR3
ADediting_1008954	chr3_101823671_+	UTR3
ADediting_1008955	chr3_101823685_+	UTR3
ADediting_1008956	chr3_101823690_+	UTR3
ADediting_1008957	chr3_101823728_+	UTR3
ADediting_1008958	chr3_101826762_+	UTR3
ADediting_1008959	chr3_101826778_+	UTR3
ADediting_1008960	chr3_101826779_+	UTR3
ADediting_1008961	chr3_101826824_+	UTR3
ADediting_1008962	chr3_101826825_+	UTR3
ADediting_1008963	chr3_101826832_+	UTR3
ADediting_1008964	chr3_101826869_+	UTR3
ADediting_1008965	chr3_101826878_+	UTR3
ADediting_1008966	chr3_101826881_+	UTR3
ADediting_1008967	chr3_101826882_+	UTR3
ADediting_1008968	chr3_101826883_+	UTR3
ADediting_1008969	chr3_101826884_+	UTR3
ADediting_1008970	chr3_101826886_+	UTR3
ADediting_1008971	chr3_101826890_+	UTR3
ADediting_1008972	chr3_101826902_+	UTR3
ADediting_1008973	chr3_101826913_+	UTR3
ADediting_1008974	chr3_101826922_+	UTR3
ADediting_1008975	chr3_101826953_+	UTR3
ADediting_1008976	chr3_101826954_+	UTR3
ADediting_1008977	chr3_101827024_+	UTR3
ADediting_1643118	chr3_101787541_+	intronic
ADediting_1643119	chr3_101787567_+	intronic
ADediting_1643120	chr3_101787568_+	intronic
ADediting_1643121	chr3_101788745_+	intronic
ADediting_1643122	chr3_101788755_+	intronic
ADediting_1643123	chr3_101789731_+	intronic
ADediting_1643124	chr3_101789735_+	intronic
ADediting_1643125	chr3_101789874_+	intronic
ADediting_1643126	chr3_101789911_+	intronic
ADediting_1643127	chr3_101789913_+	intronic
ADediting_1643128	chr3_101802387_+	intronic
ADediting_1643129	chr3_101802408_+	intronic
ADediting_1643130	chr3_101803806_+	intronic
ADediting_1643131	chr3_101803894_+	intronic
ADediting_1643132	chr3_101807390_+	intronic
ADediting_1643133	chr3_101807413_+	intronic
ADediting_1643134	chr3_101811792_+	intronic
ADediting_1643135	chr3_101811859_+	intronic
ADediting_1643136	chr3_101811863_+	intronic
ADediting_1643137	chr3_101811867_+	intronic
ADediting_1643138	chr3_101811900_+	intronic
ADediting_1643139	chr3_101811901_+	intronic
ADediting_1643140	chr3_101811918_+	intronic
ADediting_1643141	chr3_101823693_+	UTR3
ADediting_1643142	chr3_101826944_+	UTR3

Repat-regional RNA editing(s).

ADeditome ID	Position	Repeat family	Repeat sub family	Repeat name
ADediting_1008874	chr3_101782688_+	SINE	Alu	Name=AluJb
ADediting_1008875	chr3_101782731_+	SINE	Alu	Name=AluJb
ADediting_1008882	chr3_101787008_+	SINE	Alu	Name=AluSz
ADediting_1008883	chr3_101787108_+	SINE	Alu	Name=AluSz
ADediting_1008884	chr3_101787580_+	SINE	Alu	Name=AluSz6
ADediting_1008885	chr3_101788674_+	SINE	Alu	Name=AluSx1
ADediting_1008886	chr3_101788716_+	SINE	Alu	Name=AluSx1
ADediting_1008887	chr3_101789288_+	SINE	Alu	Name=AluJr4
ADediting_1008888	chr3_101789289_+	SINE	Alu	Name=AluJr4
ADediting_1008889	chr3_101789311_+	SINE	Alu	Name=AluJr4
ADediting_1008890	chr3_101789324_+	SINE	Alu	Name=AluJr4
ADediting_1008891	chr3_101789362_+	SINE	Alu	Name=AluJr4
ADediting_1008892	chr3_101789379_+	SINE	Alu	Name=AluJr4
ADediting_1008893	chr3_101789443_+	SINE	Alu	Name=AluJr4
ADediting_1008894	chr3_101789912_+	SINE	Alu	Name=AluJr
ADediting_1008895	chr3_101789926_+	SINE	Alu	Name=AluJr
ADediting_1008896	chr3_101791486_+	SINE	Alu	Name=AluSx1
ADediting_1008901	chr3_101795343_+	SINE	Alu	Name=AluSx1
ADediting_1008902	chr3_101795359_+	SINE	Alu	Name=AluSx1
ADediting_1008903	chr3_101795360_+	SINE	Alu	Name=AluSx1
ADediting_1008904	chr3_101795361_+	SINE	Alu	Name=AluSx1
ADediting_1008905	chr3_101795384_+	SINE	Alu	Name=AluSx1
ADediting_1008906	chr3_101795395_+	SINE	Alu	Name=AluSx1
ADediting_1008907	chr3_101795397_+	SINE	Alu	Name=AluSx1
ADediting_1008908	chr3_101795398_+	SINE	Alu	Name=AluSx1
ADediting_1008914	chr3_101802921_+	SINE	Alu	Name=AluJr
ADediting_1008915	chr3_101802967_+	SINE	Alu	Name=AluJr
ADediting_1008916	chr3_101803640_+	SINE	Alu	Name=AluJb
ADediting_1008917	chr3_101803641_+	SINE	Alu	Name=AluJb
ADediting_1008918	chr3_101803643_+	SINE	Alu	Name=AluJb
ADediting_1008919	chr3_101803759_+	SINE	Alu	Name=AluJb
ADediting_1008920	chr3_101803803_+	SINE	Alu	Name=AluJb
ADediting_1008921	chr3_101803882_+	SINE	Alu	Name=AluJb
ADediting_1008922	chr3_101805649_+	SINE	Alu	Name=AluSz6
ADediting_1008923	chr3_101811030_+	SINE	Alu	Name=AluSz6
ADediting_1008924	chr3_101811068_+	SINE	Alu	Name=AluSz6
ADediting_1008925	chr3_101811834_+	SINE	Alu	Name=AluSz
ADediting_1008926	chr3_101811838_+	SINE	Alu	Name=AluSz
ADediting_1008927	chr3_101812597_+	SINE	Alu	Name=AluY
ADediting_1008928	chr3_101812602_+	SINE	Alu	Name=AluY
ADediting_1008929	chr3_101812625_+	SINE	Alu	Name=AluY
ADediting_1008930	chr3_101812665_+	SINE	Alu	Name=AluY
ADediting_1008934	chr3_101823506_+	SINE	Alu	Name=AluJr
ADediting_1008935	chr3_101823511_+	SINE	Alu	Name=AluJr
ADediting_1008936	chr3_101823512_+	SINE	Alu	Name=AluJr
ADediting_1008937	chr3_101823520_+	SINE	Alu	Name=AluJr
ADediting_1008938	chr3_101823541_+	SINE	Alu	Name=AluJr
ADediting_1008939	chr3_101823545_+	SINE	Alu	Name=AluJr
ADediting_1008940	chr3_101823559_+	SINE	Alu	Name=AluJr
ADediting_1008941	chr3_101823564_+	SINE	Alu	Name=AluJr
ADediting_1008942	chr3_101823567_+	SINE	Alu	Name=AluJr
ADediting_1008943	chr3_101823578_+	SINE	Alu	Name=AluJr
ADediting_1008944	chr3_101823588_+	SINE	Alu	Name=AluJr
ADediting_1008945	chr3_101823592_+	SINE	Alu	Name=AluJr
ADediting_1008946	chr3_101823609_+	SINE	Alu	Name=AluJr
ADediting_1008947	chr3_101823612_+	SINE	Alu	Name=AluJr
ADediting_1008948	chr3_101823613_+	SINE	Alu	Name=AluJr
ADediting_1008949	chr3_101823630_+	SINE	Alu	Name=AluJr
ADediting_1008950	chr3_101823650_+	SINE	Alu	Name=AluJr
ADediting_1008951	chr3_101823657_+	SINE	Alu	Name=AluJr
ADediting_1008952	chr3_101823666_+	SINE	Alu	Name=AluJr
ADediting_1008953	chr3_101823667_+	SINE	Alu	Name=AluJr
ADediting_1008954	chr3_101823671_+	SINE	Alu	Name=AluJr
ADediting_1008955	chr3_101823685_+	SINE	Alu	Name=AluJr
ADediting_1008956	chr3_101823690_+	SINE	Alu	Name=AluJr
ADediting_1008957	chr3_101823728_+	SINE	Alu	Name=AluJr
ADediting_1008958	chr3_101826762_+	SINE	Alu	Name=AluSq2
ADediting_1008959	chr3_101826778_+	SINE	Alu	Name=AluSq2
ADediting_1008960	chr3_101826779_+	SINE	Alu	Name=AluSq2
ADediting_1008961	chr3_101826824_+	SINE	Alu	Name=AluSq2
ADediting_1008962	chr3_101826825_+	SINE	Alu	Name=AluSq2
ADediting_1008963	chr3_101826832_+	SINE	Alu	Name=AluSq2
ADediting_1008964	chr3_101826869_+	SINE	Alu	Name=AluSq2
ADediting_1008965	chr3_101826878_+	SINE	Alu	Name=AluSq2
ADediting_1008966	chr3_101826881_+	SINE	Alu	Name=AluSq2
ADediting_1008967	chr3_101826882_+	SINE	Alu	Name=AluSq2
ADediting_1008968	chr3_101826883_+	SINE	Alu	Name=AluSq2
ADediting_1008969	chr3_101826884_+	SINE	Alu	Name=AluSq2
ADediting_1008970	chr3_101826886_+	SINE	Alu	Name=AluSq2
ADediting_1008971	chr3_101826890_+	SINE	Alu	Name=AluSq2
ADediting_1008972	chr3_101826902_+	SINE	Alu	Name=AluSq2
ADediting_1008973	chr3_101826913_+	SINE	Alu	Name=AluSq2
ADediting_1008974	chr3_101826922_+	SINE	Alu	Name=AluSq2
ADediting_1008975	chr3_101826953_+	SINE	Alu	Name=AluSq2
ADediting_1008976	chr3_101826954_+	SINE	Alu	Name=AluSq2
ADediting_1008977	chr3_101827024_+	SINE	Alu	Name=AluSq2
ADediting_1643118	chr3_101787541_+	SINE	Alu	Name=AluSz6
ADediting_1643119	chr3_101787567_+	SINE	Alu	Name=AluSz6
ADediting_1643120	chr3_101787568_+	SINE	Alu	Name=AluSz6
ADediting_1643121	chr3_101788745_+	SINE	Alu	Name=AluSx1
ADediting_1643122	chr3_101788755_+	SINE	Alu	Name=AluSx1
ADediting_1643123	chr3_101789731_+	SINE	Alu	Name=AluJr
ADediting_1643124	chr3_101789735_+	SINE	Alu	Name=AluJr
ADediting_1643125	chr3_101789874_+	SINE	Alu	Name=AluJr
ADediting_1643126	chr3_101789911_+	SINE	Alu	Name=AluJr
ADediting_1643127	chr3_101789913_+	SINE	Alu	Name=AluJr
ADediting_1643128	chr3_101802387_+	SINE	Alu	Name=FAM
ADediting_1643129	chr3_101802408_+	SINE	Alu	Name=FAM
ADediting_1643130	chr3_101803806_+	SINE	Alu	Name=AluJb
ADediting_1643131	chr3_101803894_+	SINE	Alu	Name=AluJb
ADediting_1643132	chr3_101807390_+	SINE	Alu	Name=AluJo
ADediting_1643133	chr3_101807413_+	SINE	Alu	Name=AluJo
ADediting_1643134	chr3_101811792_+	SINE	Alu	Name=AluSz
ADediting_1643135	chr3_101811859_+	SINE	Alu	Name=AluSz
ADediting_1643136	chr3_101811863_+	SINE	Alu	Name=AluSz
ADediting_1643137	chr3_101811867_+	SINE	Alu	Name=AluSz
ADediting_1643138	chr3_101811900_+	SINE	Alu	Name=AluSz
ADediting_1643139	chr3_101811901_+	SINE	Alu	Name=AluSz
ADediting_1643140	chr3_101811918_+	SINE	Alu	Name=AluSz
ADediting_1643141	chr3_101823693_+	SINE	Alu	Name=AluJr
ADediting_1643142	chr3_101826944_+	SINE	Alu	Name=AluSq2

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RNA A-to-I editing events in the alternative splicing sites for NXPE3

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	ADeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	ADediting_1008916	chr3_101803640_+	101803625:101803647	3ss	5i	GTTTGTTTGTTTTGCAACAGGGT	8.32	GTTTGTTTGTTTTGCGACAGGGT	7.52
ES	ADediting_1008917	chr3_101803641_+	101803625:101803647	3ss	4i	GTTTGTTTGTTTTGCAACAGGGT	8.32	GTTTGTTTGTTTTGCAGCAGGGT	5.51
ES	ADediting_1008918	chr3_101803643_+	101803625:101803647	3ss	2i	GTTTGTTTGTTTTGCAACAGGGT	8.32	GTTTGTTTGTTTTGCAACGGGGT	0.37
ME2	ADediting_1008916	chr3_101803640_+	101803625:101803647	3ss	5i	GTTTGTTTGTTTTGCAACAGGGT	8.32	GTTTGTTTGTTTTGCGACAGGGT	7.52
ME2	ADediting_1008916	chr3_101803640_+	101803625:101803647	3ss	5i	GTTTGTTTGTTTTGCAACAGGGT	8.32	GTTTGTTTGTTTTGCGACAGGGT	7.52
ME2	ADediting_1008917	chr3_101803641_+	101803625:101803647	3ss	4i	GTTTGTTTGTTTTGCAACAGGGT	8.32	GTTTGTTTGTTTTGCAGCAGGGT	5.51
ME2	ADediting_1008917	chr3_101803641_+	101803625:101803647	3ss	4i	GTTTGTTTGTTTTGCAACAGGGT	8.32	GTTTGTTTGTTTTGCAGCAGGGT	5.51
ME2	ADediting_1008918	chr3_101803643_+	101803625:101803647	3ss	2i	GTTTGTTTGTTTTGCAACAGGGT	8.32	GTTTGTTTGTTTTGCAACGGGGT	0.37
ME2	ADediting_1008918	chr3_101803643_+	101803625:101803647	3ss	2i	GTTTGTTTGTTTTGCAACAGGGT	8.32	GTTTGTTTGTTTTGCAACGGGGT	0.37

Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for NXPE3

Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

- Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

ADeditome ID

Chr

Positoing

Skipped exon

ENSG

ENSTs

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Protein coding region RNA A-to-I editings for NXPE3

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for NXPE3

RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

ADeditom_ID	Position	ENSG	ENST	Transcript name	miRNA ID	Chromosome	Targt	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
ADediting_1008934	chr3_101823506_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-6807-5p	chr3	101823504	101823511	8mer-1a	101823490	101823511	141	-13.78
ADediting_1008934	chr3_101823506_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-6807-5p	chr3	101823504	101823511	8mer-1a	101823490	101823511	141	-13.78
ADediting_1008936	chr3_101823512_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-4650-5p	chr3	101823510	101823516	7mer-m8	101823500	101823517	147	-20.53
ADediting_1008936	chr3_101823512_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-4650-5p	chr3	101823510	101823516	7mer-m8	101823500	101823517	147	-20.53
ADediting_1008937	chr3_101823520_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-8052	chr3	101823518	101823524	7mer-1a	101823506	101823524	140	-24.15
ADediting_1008937	chr3_101823520_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-8052	chr3	101823518	101823524	7mer-1a	101823506	101823524	140	-24.15
ADediting_1008939	chr3_101823545_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-4485-5p	chr3	101823539	101823545	7mer-m8	101823531	101823546	147	-19.44
ADediting_1008939	chr3_101823545_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-4485-5p	chr3	101823539	101823545	7mer-m8	101823531	101823546	147	-19.44
ADediting_1008940	chr3_101823559_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-5699-5p	chr3	101823555	101823561	7mer-m8	101823540	101823562	146	-14.42
ADediting_1008940	chr3_101823559_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-874-5p	chr3	101823556	101823563	8mer-1a	101823541	101823563	152	-20.02
ADediting_1008940	chr3_101823559_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-5699-5p	chr3	101823555	101823561	7mer-m8	101823540	101823562	146	-14.42
ADediting_1008940	chr3_101823559_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-874-5p	chr3	101823556	101823563	8mer-1a	101823541	101823563	152	-20.02
ADediting_1008942	chr3_101823567_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-331-3p	chr3	101823561	101823567	7mer-m8	101823548	101823568	146	-22.34
ADediting_1008942	chr3_101823567_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-6771-3p	chr3	101823564	101823570	7mer-m8	101823551	101823571	159	-25.85
ADediting_1008942	chr3_101823567_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-331-3p	chr3	101823561	101823567	7mer-m8	101823548	101823568	146	-22.34
ADediting_1008942	chr3_101823567_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-6771-3p	chr3	101823564	101823570	7mer-m8	101823551	101823571	159	-25.85
ADediting_1008945	chr3_101823592_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-4716-5p	chr3	101823586	101823592	7mer-m8	101823572	101823593	148	-14.09
ADediting_1008945	chr3_101823592_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-4716-5p	chr3	101823586	101823592	7mer-m8	101823572	101823593	148	-14.09
ADediting_1008946	chr3_101823609_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-3678-3p	chr3	101823604	101823611	8mer-1a	101823590	101823611	142	-13.56
ADediting_1008946	chr3_101823609_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-4756-3p	chr3	101823602	101823608	7mer-m8	101823589	101823609	158	-17.42
ADediting_1008946	chr3_101823609_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-557	chr3	101823607	101823613	7mer-1a	101823590	101823613	140	-19.16
ADediting_1008946	chr3_101823609_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-3678-3p	chr3	101823604	101823611	8mer-1a	101823590	101823611	142	-13.56
ADediting_1008946	chr3_101823609_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-4756-3p	chr3	101823602	101823608	7mer-m8	101823589	101823609	158	-17.42
ADediting_1008946	chr3_101823609_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-557	chr3	101823607	101823613	7mer-1a	101823590	101823613	140	-19.16
ADediting_1008948	chr3_101823613_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-578	chr3	101823608	101823615	8mer-1a	101823595	101823615	141	-10.9
ADediting_1008948	chr3_101823613_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-578	chr3	101823608	101823615	8mer-1a	101823595	101823615	141	-10.9
ADediting_1008951	chr3_101823657_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-2355-5p	chr3	101823654	101823660	7mer-m8	101823642	101823661	149	-19.41
ADediting_1008951	chr3_101823657_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-2355-5p	chr3	101823654	101823660	7mer-m8	101823642	101823661	149	-19.41
ADediting_1008953	chr3_101823667_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-18a-3p	chr3	101823665	101823671	7mer-m8	101823652	101823672	159	-26.28
ADediting_1008953	chr3_101823667_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-3157-3p	chr3	101823664	101823670	7mer-m8	101823649	101823671	163	-31.59
ADediting_1008953	chr3_101823667_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-18a-3p	chr3	101823665	101823671	7mer-m8	101823652	101823672	159	-26.28
ADediting_1008953	chr3_101823667_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-3157-3p	chr3	101823664	101823670	7mer-m8	101823649	101823671	163	-31.59
ADediting_1008955	chr3_101823685_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-3136-3p	chr3	101823681	101823687	7mer-m8	101823667	101823688	150	-16.87
ADediting_1008955	chr3_101823685_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-6724-5p	chr3	101823683	101823689	7mer-m8	101823668	101823690	141	-25.33
ADediting_1008955	chr3_101823685_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-6773-5p	chr3	101823683	101823689	7mer-m8	101823670	101823690	152	-22.41
ADediting_1008955	chr3_101823685_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-7155-3p	chr3	101823681	101823687	7mer-m8	101823670	101823688	143	-17.43
ADediting_1008955	chr3_101823685_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-3136-3p	chr3	101823681	101823687	7mer-m8	101823667	101823688	150	-16.87
ADediting_1008955	chr3_101823685_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-6724-5p	chr3	101823683	101823689	7mer-m8	101823668	101823690	141	-25.33
ADediting_1008955	chr3_101823685_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-6773-5p	chr3	101823683	101823689	7mer-m8	101823670	101823690	152	-22.41
ADediting_1008955	chr3_101823685_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-7155-3p	chr3	101823681	101823687	7mer-m8	101823670	101823688	143	-17.43
ADediting_1008957	chr3_101823728_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-143-5p	chr3	101823724	101823730	7mer-m8	101823709	101823731	159	-21.26
ADediting_1008957	chr3_101823728_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-5693	chr3	101823721	101823727	7mer-m8	101823707	101823728	150	-21.09
ADediting_1008957	chr3_101823728_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-143-5p	chr3	101823724	101823730	7mer-m8	101823709	101823731	159	-21.26
ADediting_1008957	chr3_101823728_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-5693	chr3	101823721	101823727	7mer-m8	101823707	101823728	150	-21.09
ADediting_1008958	chr3_101826762_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-6872-3p	chr3	101826756	101826762	7mer-m8	101826741	101826763	145	-20.31
ADediting_1008958	chr3_101826762_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-6872-3p	chr3	101826756	101826762	7mer-m8	101826741	101826763	145	-20.31
ADediting_1008959	chr3_101826778_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-513a-5p	chr3	101826772	101826778	7mer-m8	101826762	101826779	152	-17.32
ADediting_1008959	chr3_101826778_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-638	chr3	101826777	101826783	7mer-1a	101826759	101826783	153	-31.53
ADediting_1008959	chr3_101826778_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-513a-5p	chr3	101826772	101826778	7mer-m8	101826762	101826779	152	-17.32
ADediting_1008959	chr3_101826778_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-638	chr3	101826777	101826783	7mer-1a	101826759	101826783	153	-31.53
ADediting_1008960	chr3_101826779_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-8052	chr3	101826777	101826783	7mer-1a	101826765	101826783	148	-29.06
ADediting_1008960	chr3_101826779_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-8052	chr3	101826777	101826783	7mer-1a	101826765	101826783	148	-29.06
ADediting_1008962	chr3_101826825_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-378a-5p	chr3	101826820	101826826	7mer-m8	101826806	101826827	163	-29.66
ADediting_1008962	chr3_101826825_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-378a-5p	chr3	101826820	101826826	7mer-m8	101826806	101826827	163	-29.66
ADediting_1008964	chr3_101826869_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-374b-3p	chr3	101826866	101826873	8mer-1a	101826848	101826873	154	-14.99
ADediting_1008964	chr3_101826869_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-4756-3p	chr3	101826862	101826868	7mer-m8	101826850	101826869	153	-15.16
ADediting_1008964	chr3_101826869_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-374b-3p	chr3	101826866	101826873	8mer-1a	101826848	101826873	154	-14.99
ADediting_1008964	chr3_101826869_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-4756-3p	chr3	101826862	101826868	7mer-m8	101826850	101826869	153	-15.16
ADediting_1008965	chr3_101826878_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-153-5p	chr3	101826871	101826877	7mer-m8	101826856	101826878	148	-8.16
ADediting_1008965	chr3_101826878_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-3680-3p	chr3	101826875	101826882	8mer-1a	101826860	101826882	140	-14.24
ADediting_1008965	chr3_101826878_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-153-5p	chr3	101826871	101826877	7mer-m8	101826856	101826878	148	-8.16
ADediting_1008965	chr3_101826878_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-3680-3p	chr3	101826875	101826882	8mer-1a	101826860	101826882	140	-14.24
ADediting_1008966	chr3_101826881_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-4742-3p	chr3	101826874	101826881	8mer-1a	101826859	101826881	142	-9.18
ADediting_1008966	chr3_101826881_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-4742-3p	chr3	101826874	101826881	8mer-1a	101826859	101826881	142	-9.18
ADediting_1008967	chr3_101826882_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-26a-1-3p	chr3	101826880	101826886	7mer-m8	101826865	101826887	155	-11.39
ADediting_1008967	chr3_101826882_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-26a-2-3p	chr3	101826880	101826886	7mer-m8	101826865	101826887	162	-11.52
ADediting_1008967	chr3_101826882_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-578	chr3	101826877	101826883	7mer-m8	101826864	101826884	148	-9.14
ADediting_1008967	chr3_101826882_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-643	chr3	101826875	101826882	8mer-1a	101826860	101826882	147	-12.1
ADediting_1008967	chr3_101826882_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-26a-1-3p	chr3	101826880	101826886	7mer-m8	101826865	101826887	155	-11.39
ADediting_1008967	chr3_101826882_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-26a-2-3p	chr3	101826880	101826886	7mer-m8	101826865	101826887	162	-11.52
ADediting_1008967	chr3_101826882_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-578	chr3	101826877	101826883	7mer-m8	101826864	101826884	148	-9.14
ADediting_1008967	chr3_101826882_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-643	chr3	101826875	101826882	8mer-1a	101826860	101826882	147	-12.1
ADediting_1008968	chr3_101826883_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-6844	chr3	101826877	101826883	7mer-m8	101826863	101826884	155	-7.49
ADediting_1008968	chr3_101826883_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-6844	chr3	101826877	101826883	7mer-m8	101826863	101826884	155	-7.49
ADediting_1008970	chr3_101826886_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-3187-3p	chr3	101826883	101826889	7mer-m8	101826871	101826890	140	-13.42
ADediting_1008970	chr3_101826886_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-3190-5p	chr3	101826884	101826890	7mer-m8	101826872	101826891	143	-14.82
ADediting_1008970	chr3_101826886_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-3187-3p	chr3	101826883	101826889	7mer-m8	101826871	101826890	140	-13.42
ADediting_1008970	chr3_101826886_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-3190-5p	chr3	101826884	101826890	7mer-m8	101826872	101826891	143	-14.82
ADediting_1008971	chr3_101826890_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-941	chr3	101826886	101826892	7mer-m8	101826871	101826893	153	-25.69
ADediting_1008971	chr3_101826890_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-941	chr3	101826886	101826892	7mer-m8	101826871	101826893	153	-25.69
ADediting_1008972	chr3_101826902_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-4787-3p	chr3	101826898	101826904	7mer-m8	101826880	101826905	160	-26.37
ADediting_1008972	chr3_101826902_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-4787-3p	chr3	101826898	101826904	7mer-m8	101826880	101826905	160	-26.37
ADediting_1008973	chr3_101826913_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-92b-5p	chr3	101826911	101826917	7mer-1a	101826895	101826917	145	-24.28
ADediting_1008973	chr3_101826913_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-92b-5p	chr3	101826911	101826917	7mer-1a	101826895	101826917	145	-24.28
ADediting_1008974	chr3_101826922_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-1207-3p	chr3	101826915	101826921	7mer-m8	101826905	101826922	140	-12.56
ADediting_1008974	chr3_101826922_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-646	chr3	101826917	101826923	7mer-m8	101826906	101826924	145	-14.99
ADediting_1008974	chr3_101826922_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-1207-3p	chr3	101826915	101826921	7mer-m8	101826905	101826922	140	-12.56
ADediting_1008974	chr3_101826922_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-646	chr3	101826917	101826923	7mer-m8	101826906	101826924	145	-14.99
ADediting_1008976	chr3_101826954_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-4437	chr3	101826950	101826956	7mer-m8	101826937	101826957	146	-19.53
ADediting_1008976	chr3_101826954_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-4437	chr3	101826950	101826956	7mer-m8	101826937	101826957	146	-19.53
ADediting_1008977	chr3_101827024_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-6837-3p	chr3	101827017	101827023	7mer-m8	101827004	101827024	144	-16.75
ADediting_1008977	chr3_101827024_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-6837-3p	chr3	101827017	101827023	7mer-m8	101827004	101827024	144	-16.75
ADediting_1643141	chr3_101823693_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-497-3p	chr3	101823690	101823696	7mer-m8	101823678	101823697	141	-17.48
ADediting_1643141	chr3_101823693_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-6715a-3p	chr3	101823691	101823698	8mer-1a	101823679	101823698	145	-12.72
ADediting_1643141	chr3_101823693_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-497-3p	chr3	101823690	101823696	7mer-m8	101823678	101823697	141	-17.48
ADediting_1643141	chr3_101823693_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-6715a-3p	chr3	101823691	101823698	8mer-1a	101823679	101823698	145	-12.72
ADediting_1643142	chr3_101826944_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-6749-3p	chr3	101826938	101826944	7mer-m8	101826926	101826945	150	-23.29
ADediting_1643142	chr3_101826944_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-6749-3p	chr3	101826938	101826944	7mer-m8	101826926	101826945	150	-23.29

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

ADeditom_ID	Position	ENSG	ENST	Transcript name	miRNA ID	Chromosome	Targt	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
ADediting_1008937	chr3_101823520_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-10399-5p	chr3	101823514	101823520	7mer-m8	101823501	101823521	143	-9.53
ADediting_1008937	chr3_101823520_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-5089-5p	chr3	101823518	101823524	7mer-m8	101823505	101823525	145	-13.59
ADediting_1008937	chr3_101823520_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-6504-3p	chr3	101823514	101823520	7mer-m8	101823502	101823521	140	-7.96
ADediting_1008937	chr3_101823520_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-10399-5p	chr3	101823514	101823520	7mer-m8	101823501	101823521	143	-9.53
ADediting_1008937	chr3_101823520_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-5089-5p	chr3	101823518	101823524	7mer-m8	101823505	101823525	145	-13.59
ADediting_1008937	chr3_101823520_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-6504-3p	chr3	101823514	101823520	7mer-m8	101823502	101823521	140	-7.96
ADediting_1008938	chr3_101823541_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-3176	chr3	101823535	101823541	7mer-m8	101823524	101823542	140	-15.24
ADediting_1008938	chr3_101823541_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-3922-3p	chr3	101823535	101823541	7mer-m8	101823521	101823542	141	-19.73
ADediting_1008938	chr3_101823541_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-6878-3p	chr3	101823534	101823540	7mer-m8	101823521	101823541	142	-18.73
ADediting_1008938	chr3_101823541_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-3176	chr3	101823535	101823541	7mer-m8	101823524	101823542	140	-15.24
ADediting_1008938	chr3_101823541_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-3922-3p	chr3	101823535	101823541	7mer-m8	101823521	101823542	141	-19.73
ADediting_1008938	chr3_101823541_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-6878-3p	chr3	101823534	101823540	7mer-m8	101823521	101823541	142	-18.73
ADediting_1008939	chr3_101823545_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-1976	chr3	101823542	101823548	7mer-m8	101823530	101823549	150	-25.93
ADediting_1008939	chr3_101823545_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-660-3p	chr3	101823543	101823550	8mer-1a	101823530	101823550	148	-18.09
ADediting_1008939	chr3_101823545_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-6747-3p	chr3	101823540	101823547	8mer-1a	101823527	101823547	150	-24.03
ADediting_1008939	chr3_101823545_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-1976	chr3	101823542	101823548	7mer-m8	101823530	101823549	150	-25.93
ADediting_1008939	chr3_101823545_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-660-3p	chr3	101823543	101823550	8mer-1a	101823530	101823550	148	-18.09
ADediting_1008939	chr3_101823545_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-6747-3p	chr3	101823540	101823547	8mer-1a	101823527	101823547	150	-24.03
ADediting_1008940	chr3_101823559_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-6878-3p	chr3	101823557	101823563	7mer-m8	101823542	101823564	150	-27.54
ADediting_1008940	chr3_101823559_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-6878-3p	chr3	101823557	101823563	7mer-m8	101823542	101823564	150	-27.54
ADediting_1008941	chr3_101823564_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-3176	chr3	101823558	101823564	7mer-m8	101823547	101823565	145	-17.46
ADediting_1008941	chr3_101823564_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-3922-3p	chr3	101823558	101823564	7mer-m8	101823545	101823565	150	-19.59
ADediting_1008941	chr3_101823564_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-6878-3p	chr3	101823557	101823563	7mer-m8	101823542	101823564	150	-27.54
ADediting_1008941	chr3_101823564_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-3176	chr3	101823558	101823564	7mer-m8	101823547	101823565	145	-17.46
ADediting_1008941	chr3_101823564_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-3922-3p	chr3	101823558	101823564	7mer-m8	101823545	101823565	150	-19.59
ADediting_1008941	chr3_101823564_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-6878-3p	chr3	101823557	101823563	7mer-m8	101823542	101823564	150	-27.54
ADediting_1008943	chr3_101823578_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-3663-5p	chr3	101823572	101823578	7mer-m8	101823560	101823579	144	-21.71
ADediting_1008943	chr3_101823578_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-6131	chr3	101823573	101823579	7mer-m8	101823562	101823580	140	-16.72
ADediting_1008943	chr3_101823578_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-6843-3p	chr3	101823571	101823577	7mer-m8	101823559	101823578	152	-20.01
ADediting_1008943	chr3_101823578_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-6848-3p	chr3	101823571	101823577	7mer-m8	101823561	101823578	142	-15.32
ADediting_1008943	chr3_101823578_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-3663-5p	chr3	101823572	101823578	7mer-m8	101823560	101823579	144	-21.71
ADediting_1008943	chr3_101823578_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-6131	chr3	101823573	101823579	7mer-m8	101823562	101823580	140	-16.72
ADediting_1008943	chr3_101823578_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-6843-3p	chr3	101823571	101823577	7mer-m8	101823559	101823578	152	-20.01
ADediting_1008943	chr3_101823578_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-6848-3p	chr3	101823571	101823577	7mer-m8	101823561	101823578	142	-15.32
ADediting_1008944	chr3_101823588_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-744-3p	chr3	101823583	101823589	7mer-m8	101823566	101823590	149	-15.79
ADediting_1008944	chr3_101823588_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-744-3p	chr3	101823583	101823589	7mer-m8	101823566	101823590	149	-15.79
ADediting_1008946	chr3_101823609_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-3674	chr3	101823605	101823612	8mer-1a	101823591	101823612	140	-9.25
ADediting_1008946	chr3_101823609_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-6832-5p	chr3	101823603	101823610	8mer-1a	101823588	101823610	150	-14.06
ADediting_1008946	chr3_101823609_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-3674	chr3	101823605	101823612	8mer-1a	101823591	101823612	140	-9.25
ADediting_1008946	chr3_101823609_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-6832-5p	chr3	101823603	101823610	8mer-1a	101823588	101823610	150	-14.06
ADediting_1008947	chr3_101823612_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-3674	chr3	101823605	101823612	8mer-1a	101823591	101823612	140	-9.25
ADediting_1008947	chr3_101823612_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-3674	chr3	101823605	101823612	8mer-1a	101823591	101823612	140	-9.25
ADediting_1008949	chr3_101823630_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-1261	chr3	101823623	101823629	7mer-m8	101823612	101823630	147	-8.88
ADediting_1008949	chr3_101823630_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-619-3p	chr3	101823626	101823632	7mer-m8	101823610	101823633	154	-12.59
ADediting_1008949	chr3_101823630_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-6765-3p	chr3	101823627	101823633	7mer-m8	101823614	101823634	144	-18.02
ADediting_1008949	chr3_101823630_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-1261	chr3	101823623	101823629	7mer-m8	101823612	101823630	147	-8.88
ADediting_1008949	chr3_101823630_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-619-3p	chr3	101823626	101823632	7mer-m8	101823610	101823633	154	-12.59
ADediting_1008949	chr3_101823630_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-6765-3p	chr3	101823627	101823633	7mer-m8	101823614	101823634	144	-18.02
ADediting_1008951	chr3_101823657_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-325	chr3	101823651	101823657	7mer-m8	101823636	101823658	147	-17.09
ADediting_1008951	chr3_101823657_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-325	chr3	101823651	101823657	7mer-m8	101823636	101823658	147	-17.09
ADediting_1008954	chr3_101823671_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-3620-3p	chr3	101823669	101823676	8mer-1a	101823655	101823676	152	-26.23
ADediting_1008954	chr3_101823671_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-6747-3p	chr3	101823666	101823672	7mer-m8	101823651	101823673	153	-23.72
ADediting_1008954	chr3_101823671_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-6752-3p	chr3	101823667	101823673	7mer-m8	101823655	101823674	149	-26.24
ADediting_1008954	chr3_101823671_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-3620-3p	chr3	101823669	101823676	8mer-1a	101823655	101823676	152	-26.23
ADediting_1008954	chr3_101823671_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-6747-3p	chr3	101823666	101823672	7mer-m8	101823651	101823673	153	-23.72
ADediting_1008954	chr3_101823671_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-6752-3p	chr3	101823667	101823673	7mer-m8	101823655	101823674	149	-26.24
ADediting_1008955	chr3_101823685_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-10400-3p	chr3	101823683	101823689	7mer-m8	101823669	101823690	140	-20.37
ADediting_1008955	chr3_101823685_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-4437	chr3	101823682	101823689	8mer-1a	101823669	101823689	141	-19.32
ADediting_1008955	chr3_101823685_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-4674	chr3	101823683	101823689	7mer-m8	101823670	101823690	142	-23.98
ADediting_1008955	chr3_101823685_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-10400-3p	chr3	101823683	101823689	7mer-m8	101823669	101823690	140	-20.37
ADediting_1008955	chr3_101823685_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-4437	chr3	101823682	101823689	8mer-1a	101823669	101823689	141	-19.32
ADediting_1008955	chr3_101823685_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-4674	chr3	101823683	101823689	7mer-m8	101823670	101823690	142	-23.98
ADediting_1008956	chr3_101823690_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-10400-3p	chr3	101823683	101823689	7mer-m8	101823669	101823690	140	-20.37
ADediting_1008956	chr3_101823690_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-4674	chr3	101823683	101823689	7mer-m8	101823670	101823690	142	-23.98
ADediting_1008956	chr3_101823690_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-10400-3p	chr3	101823683	101823689	7mer-m8	101823669	101823690	140	-20.37
ADediting_1008956	chr3_101823690_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-4674	chr3	101823683	101823689	7mer-m8	101823670	101823690	142	-23.98
ADediting_1008957	chr3_101823728_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-4280	chr3	101823725	101823731	7mer-m8	101823714	101823732	147	-18.28
ADediting_1008957	chr3_101823728_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-4280	chr3	101823725	101823731	7mer-m8	101823714	101823732	147	-18.28
ADediting_1008959	chr3_101826778_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-10399-5p	chr3	101826773	101826779	7mer-m8	101826759	101826780	144	-10.26
ADediting_1008959	chr3_101826778_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-7151-3p	chr3	101826771	101826778	8mer-1a	101826762	101826778	146	-17.62
ADediting_1008959	chr3_101826778_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-10399-5p	chr3	101826773	101826779	7mer-m8	101826759	101826780	144	-10.26
ADediting_1008959	chr3_101826778_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-7151-3p	chr3	101826771	101826778	8mer-1a	101826762	101826778	146	-17.62
ADediting_1008960	chr3_101826779_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-10399-5p	chr3	101826773	101826779	7mer-m8	101826759	101826780	144	-10.26
ADediting_1008960	chr3_101826779_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-5089-5p	chr3	101826777	101826783	7mer-m8	101826765	101826784	146	-13.24
ADediting_1008960	chr3_101826779_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-10399-5p	chr3	101826773	101826779	7mer-m8	101826759	101826780	144	-10.26
ADediting_1008960	chr3_101826779_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-5089-5p	chr3	101826777	101826783	7mer-m8	101826765	101826784	146	-13.24
ADediting_1008964	chr3_101826869_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-6832-5p	chr3	101826863	101826869	7mer-m8	101826848	101826870	142	-15.43
ADediting_1008964	chr3_101826869_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-6832-5p	chr3	101826863	101826869	7mer-m8	101826848	101826870	142	-15.43
ADediting_1008970	chr3_101826886_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-4794	chr3	101826884	101826890	7mer-m8	101826870	101826891	147	-13.91
ADediting_1008970	chr3_101826886_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-664a-5p	chr3	101826884	101826890	7mer-m8	101826868	101826891	140	-13.72
ADediting_1008970	chr3_101826886_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-4794	chr3	101826884	101826890	7mer-m8	101826870	101826891	147	-13.91
ADediting_1008970	chr3_101826886_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-664a-5p	chr3	101826884	101826890	7mer-m8	101826868	101826891	140	-13.72
ADediting_1008971	chr3_101826890_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-4794	chr3	101826884	101826890	7mer-m8	101826870	101826891	147	-13.91
ADediting_1008971	chr3_101826890_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-664a-5p	chr3	101826884	101826890	7mer-m8	101826868	101826891	140	-13.72
ADediting_1008971	chr3_101826890_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-6765-3p	chr3	101826887	101826893	7mer-m8	101826874	101826894	151	-20.11
ADediting_1008971	chr3_101826890_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-4794	chr3	101826884	101826890	7mer-m8	101826870	101826891	147	-13.91
ADediting_1008971	chr3_101826890_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-664a-5p	chr3	101826884	101826890	7mer-m8	101826868	101826891	140	-13.72
ADediting_1008971	chr3_101826890_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-6765-3p	chr3	101826887	101826893	7mer-m8	101826874	101826894	151	-20.11
ADediting_1008972	chr3_101826902_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-1227-3p	chr3	101826896	101826903	8mer-1a	101826884	101826903	145	-17.23
ADediting_1008972	chr3_101826902_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-455-5p	chr3	101826898	101826904	7mer-m8	101826884	101826905	148	-21.55
ADediting_1008972	chr3_101826902_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-4715-3p	chr3	101826895	101826901	7mer-m8	101826880	101826902	155	-20.91
ADediting_1008972	chr3_101826902_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-1227-3p	chr3	101826896	101826903	8mer-1a	101826884	101826903	145	-17.23
ADediting_1008972	chr3_101826902_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-455-5p	chr3	101826898	101826904	7mer-m8	101826884	101826905	148	-21.55
ADediting_1008972	chr3_101826902_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-4715-3p	chr3	101826895	101826901	7mer-m8	101826880	101826902	155	-20.91
ADediting_1008973	chr3_101826913_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-5187-5p	chr3	101826910	101826917	8mer-1a	101826895	101826917	146	-20.21
ADediting_1008973	chr3_101826913_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-6744-5p	chr3	101826909	101826915	7mer-m8	101826898	101826916	150	-20.26
ADediting_1008973	chr3_101826913_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-5187-5p	chr3	101826910	101826917	8mer-1a	101826895	101826917	146	-20.21
ADediting_1008973	chr3_101826913_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-6744-5p	chr3	101826909	101826915	7mer-m8	101826898	101826916	150	-20.26
ADediting_1008974	chr3_101826922_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-6869-5p	chr3	101826919	101826925	7mer-m8	101826902	101826926	149	-21.01
ADediting_1008974	chr3_101826922_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-6869-5p	chr3	101826919	101826925	7mer-m8	101826902	101826926	149	-21.01
ADediting_1008975	chr3_101826953_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-498-5p	chr3	101826947	101826953	7mer-m8	101826932	101826954	142	-10.2
ADediting_1008975	chr3_101826953_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-498-5p	chr3	101826947	101826953	7mer-m8	101826932	101826954	142	-10.2
ADediting_1008976	chr3_101826954_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-498-5p	chr3	101826947	101826953	7mer-m8	101826932	101826954	142	-10.2
ADediting_1008976	chr3_101826954_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-498-5p	chr3	101826947	101826953	7mer-m8	101826932	101826954	142	-10.2
ADediting_1643141	chr3_101823693_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-606	chr3	101823689	101823695	7mer-m8	101823673	101823696	152	-15.91
ADediting_1643141	chr3_101823693_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-606	chr3	101823689	101823695	7mer-m8	101823673	101823696	152	-15.91

RNA A-to-I editing in lncRNA gained miRNA binding sites.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

ADediting_1391023

chr8_140732605_-

ENSG00000144815.16

ENST00000273347.10

NXPE3-201

hsa-miR-151a-3p

chr3

101827699

101827705

7mer-m8

101827686

101827706

155

-22.6

ADediting_1471003

chr9_63819626_+

ENSG00000144815.16

ENST00000273347.10

NXPE3-201

hsa-miR-4477b

chr3

101824776

101824782

7mer-m8

101824762

101824783

151

-10.5

ADediting_1471003

chr9_63819626_+

ENSG00000144815.16

ENST00000491511.6

NXPE3-205

hsa-miR-4477b

chr3

101824776

101824782

7mer-m8

101824762

101824783

151

-10.5

ADediting_1535951

chr14_100874558_+

ENSG00000144815.16

ENST00000273347.10

NXPE3-201

hsa-miR-337-3p

chr3

101827390

101827396

7mer-m8

101827376

101827397

149

-11.83

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

ADeditom_ID	Position	ENSG	ENST	Transcript name	miRNA ID	Chromosome	Targt	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
ADediting_1097295	chr3_85385762_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-5688	chr3	101825040	101825046	7mer-m8	101825022	101825047	146	-15.85
ADediting_1097295	chr3_85385762_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-5688	chr3	101825426	101825432	7mer-m8	101825412	101825433	142	-9.4
ADediting_1097295	chr3_85385762_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-5688	chr3	101825040	101825046	7mer-m8	101825022	101825047	146	-15.85
ADediting_1097295	chr3_85385762_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-5688	chr3	101825426	101825432	7mer-m8	101825412	101825433	142	-9.4
ADediting_1337757	chr7_5495852_-	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-589-3p	chr3	101822742	101822749	8mer-1a	101822724	101822749	153	-14.89
ADediting_1337757	chr7_5495852_-	ENSG00000144815.16	ENST00000477909.5	NXPE3-203	hsa-miR-589-3p	chr3	101822742	101822749	8mer-1a	101822724	101822749	153	-14.89
ADediting_1337757	chr7_5495852_-	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-589-3p	chr3	101822742	101822749	8mer-1a	101822724	101822749	153	-14.89
ADediting_1337757	chr7_5495852_-	ENSG00000144815.16	ENST00000616286.1	NXPE3-207	hsa-miR-589-3p	chr3	101822742	101822749	8mer-1a	101822724	101822749	153	-14.89
ADediting_1535951	chr14_100874558_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-337-3p	chr3	101822134	101822140	7mer-m8	101822120	101822141	142	-9.06
ADediting_1535951	chr14_100874558_+	ENSG00000144815.16	ENST00000477909.5	NXPE3-203	hsa-miR-337-3p	chr3	101822134	101822140	7mer-m8	101822120	101822141	142	-9.06
ADediting_1535951	chr14_100874558_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-337-3p	chr3	101822134	101822140	7mer-m8	101822120	101822141	142	-9.06
ADediting_1535951	chr14_100874558_+	ENSG00000144815.16	ENST00000616286.1	NXPE3-207	hsa-miR-337-3p	chr3	101822134	101822140	7mer-m8	101822120	101822141	142	-9.06
ADediting_291761	chr11_93733708_-	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-1304-3p	chr3	101822027	101822034	8mer-1a	101822013	101822034	151	-19.08
ADediting_291761	chr11_93733708_-	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-1304-3p	chr3	101825236	101825243	8mer-1a	101825221	101825243	142	-15.07
ADediting_291761	chr11_93733708_-	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-1304-3p	chr3	101827972	101827979	8mer-1a	101827958	101827979	150	-19.44
ADediting_291761	chr11_93733708_-	ENSG00000144815.16	ENST00000477909.5	NXPE3-203	hsa-miR-1304-3p	chr3	101822027	101822034	8mer-1a	101822013	101822034	151	-19.08
ADediting_291761	chr11_93733708_-	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-1304-3p	chr3	101822027	101822034	8mer-1a	101822013	101822034	151	-19.08
ADediting_291761	chr11_93733708_-	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-1304-3p	chr3	101825236	101825243	8mer-1a	101825221	101825243	142	-15.07
ADediting_291761	chr11_93733708_-	ENSG00000144815.16	ENST00000616286.1	NXPE3-207	hsa-miR-1304-3p	chr3	101822027	101822034	8mer-1a	101822013	101822034	151	-19.08
ADediting_843620	chr2_207754818_+	ENSG00000144815.16	ENST00000273347.10	NXPE3-201	hsa-miR-4775	chr3	101822879	101822885	7mer-m8	101822864	101822886	147	-4.91
ADediting_843620	chr2_207754818_+	ENSG00000144815.16	ENST00000491511.6	NXPE3-205	hsa-miR-4775	chr3	101822879	101822885	7mer-m8	101822864	101822886	147	-4.91

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for NXPE3

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000495842.5	protein_coding
ENST00000273347.10	protein_coding
ENST00000474165.5	protein_coding
ENST00000491511.6	protein_coding
ENST00000477909.5	protein_coding

RNA A-to-I editing in miRNA.

ADeditom_ID

ENST

mir_ID

Editing_Information

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

RNA A-to-I editing in mRNA.

ADeditom_ID	ENST	Editing_Information	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
ADediting_1008874	ENST00000495842.5	chr3_101782688_+	500	-285.50	-284.60	-287.40
ADediting_1008875	ENST00000495842.5	chr3_101782731_+	543	-286.50	-284.60	-287.40
ADediting_1008874	ENST00000273347.10	chr3_101782688_+	324	-2869.90	-2863.20	-2933.70
ADediting_1008875	ENST00000273347.10	chr3_101782731_+	367	-2869.40	-2863.20	-2933.70
ADediting_1008934	ENST00000273347.10	chr3_101823506_+	3843	-2865.40	-2863.20	-2933.70
ADediting_1008935	ENST00000273347.10	chr3_101823511_+	3848	-2863.70	-2863.20	-2933.70
ADediting_1008936	ENST00000273347.10	chr3_101823512_+	3849	-2864.10	-2863.20	-2933.70
ADediting_1008937	ENST00000273347.10	chr3_101823520_+	3857	-2863.20	-2863.20	-2933.70
ADediting_1008938	ENST00000273347.10	chr3_101823541_+	3878	-2862.50	-2863.20	-2933.70
ADediting_1008939	ENST00000273347.10	chr3_101823545_+	3882	-2864.10	-2863.20	-2933.70
ADediting_1008940	ENST00000273347.10	chr3_101823559_+	3896	-2862.30	-2863.20	-2933.70
ADediting_1008941	ENST00000273347.10	chr3_101823564_+	3901	-2862.50	-2863.20	-2933.70
ADediting_1008942	ENST00000273347.10	chr3_101823567_+	3904	-2862.30	-2863.20	-2933.70
ADediting_1008943	ENST00000273347.10	chr3_101823578_+	3915	-2862.50	-2863.20	-2933.70
ADediting_1008944	ENST00000273347.10	chr3_101823588_+	3925	-2863.20	-2863.20	-2933.70
ADediting_1008945	ENST00000273347.10	chr3_101823592_+	3929	-2869.80	-2863.20	-2933.70
ADediting_1008946	ENST00000273347.10	chr3_101823609_+	3946	-2863.20	-2863.20	-2933.70
ADediting_1008947	ENST00000273347.10	chr3_101823612_+	3949	-2863.30	-2863.20	-2933.70
ADediting_1008948	ENST00000273347.10	chr3_101823613_+	3950	-2863.30	-2863.20	-2933.70
ADediting_1008949	ENST00000273347.10	chr3_101823630_+	3967	-2862.50	-2863.20	-2933.70
ADediting_1008950	ENST00000273347.10	chr3_101823650_+	3987	-2867.40	-2863.20	-2933.70
ADediting_1008951	ENST00000273347.10	chr3_101823657_+	3994	-2863.80	-2863.20	-2933.70
ADediting_1008952	ENST00000273347.10	chr3_101823666_+	4003	-2864.90	-2863.20	-2933.70
ADediting_1008953	ENST00000273347.10	chr3_101823667_+	4004	-2867.50	-2863.20	-2933.70
ADediting_1008954	ENST00000273347.10	chr3_101823671_+	4008	-2866.60	-2863.20	-2933.70
ADediting_1008955	ENST00000273347.10	chr3_101823685_+	4022	-2863.40	-2863.20	-2933.70
ADediting_1008956	ENST00000273347.10	chr3_101823690_+	4027	-2863.00	-2863.20	-2933.70
ADediting_1643141	ENST00000273347.10	chr3_101823693_+	4030	-2863.10	-2863.20	-2933.70
ADediting_1008957	ENST00000273347.10	chr3_101823728_+	4065	-2866.60	-2863.20	-2933.70
ADediting_1008958	ENST00000273347.10	chr3_101826762_+	7099	-2861.90	-2863.20	-2933.70
ADediting_1008959	ENST00000273347.10	chr3_101826778_+	7115	-2863.30	-2863.20	-2933.70
ADediting_1008960	ENST00000273347.10	chr3_101826779_+	7116	-2863.20	-2863.20	-2933.70
ADediting_1008961	ENST00000273347.10	chr3_101826824_+	7161	-2863.40	-2863.20	-2933.70
ADediting_1008962	ENST00000273347.10	chr3_101826825_+	7162	-2866.70	-2863.20	-2933.70
ADediting_1008963	ENST00000273347.10	chr3_101826832_+	7169	-2863.00	-2863.20	-2933.70
ADediting_1008964	ENST00000273347.10	chr3_101826869_+	7206	-2864.50	-2863.20	-2933.70
ADediting_1008965	ENST00000273347.10	chr3_101826878_+	7215	-2863.20	-2863.20	-2933.70
ADediting_1008966	ENST00000273347.10	chr3_101826881_+	7218	-2863.30	-2863.20	-2933.70
ADediting_1008967	ENST00000273347.10	chr3_101826882_+	7219	-2864.40	-2863.20	-2933.70
ADediting_1008968	ENST00000273347.10	chr3_101826883_+	7220	-2866.00	-2863.20	-2933.70
ADediting_1008969	ENST00000273347.10	chr3_101826884_+	7221	-2866.10	-2863.20	-2933.70
ADediting_1008970	ENST00000273347.10	chr3_101826886_+	7223	-2865.00	-2863.20	-2933.70
ADediting_1008971	ENST00000273347.10	chr3_101826890_+	7227	-2863.20	-2863.20	-2933.70
ADediting_1008972	ENST00000273347.10	chr3_101826902_+	7239	-2863.20	-2863.20	-2933.70
ADediting_1008973	ENST00000273347.10	chr3_101826913_+	7250	-2866.40	-2863.20	-2933.70
ADediting_1008974	ENST00000273347.10	chr3_101826922_+	7259	-2863.20	-2863.20	-2933.70
ADediting_1643142	ENST00000273347.10	chr3_101826944_+	7281	-2865.30	-2863.20	-2933.70
ADediting_1008975	ENST00000273347.10	chr3_101826953_+	7290	-2862.30	-2863.20	-2933.70
ADediting_1008976	ENST00000273347.10	chr3_101826954_+	7291	-2869.90	-2863.20	-2933.70
ADediting_1008977	ENST00000273347.10	chr3_101827024_+	7361	-2862.90	-2863.20	-2933.70
ADediting_1008874	ENST00000474165.5	chr3_101782688_+	490	-320.80	-319.90	-320.10
ADediting_1008875	ENST00000474165.5	chr3_101782731_+	533	-319.20	-319.90	-320.10
ADediting_1008874	ENST00000491511.6	chr3_101782688_+	669	-2738.40	-2731.70	-2802.20
ADediting_1008875	ENST00000491511.6	chr3_101782731_+	712	-2737.90	-2731.70	-2802.20
ADediting_1008934	ENST00000491511.6	chr3_101823506_+	4188	-2733.90	-2731.70	-2802.20
ADediting_1008935	ENST00000491511.6	chr3_101823511_+	4193	-2732.20	-2731.70	-2802.20
ADediting_1008936	ENST00000491511.6	chr3_101823512_+	4194	-2732.60	-2731.70	-2802.20
ADediting_1008937	ENST00000491511.6	chr3_101823520_+	4202	-2731.70	-2731.70	-2802.20
ADediting_1008938	ENST00000491511.6	chr3_101823541_+	4223	-2731.00	-2731.70	-2802.20
ADediting_1008939	ENST00000491511.6	chr3_101823545_+	4227	-2732.60	-2731.70	-2802.20
ADediting_1008940	ENST00000491511.6	chr3_101823559_+	4241	-2730.80	-2731.70	-2802.20
ADediting_1008941	ENST00000491511.6	chr3_101823564_+	4246	-2731.00	-2731.70	-2802.20
ADediting_1008942	ENST00000491511.6	chr3_101823567_+	4249	-2730.80	-2731.70	-2802.20
ADediting_1008943	ENST00000491511.6	chr3_101823578_+	4260	-2731.00	-2731.70	-2802.20
ADediting_1008944	ENST00000491511.6	chr3_101823588_+	4270	-2731.70	-2731.70	-2802.20
ADediting_1008945	ENST00000491511.6	chr3_101823592_+	4274	-2738.30	-2731.70	-2802.20
ADediting_1008946	ENST00000491511.6	chr3_101823609_+	4291	-2731.70	-2731.70	-2802.20
ADediting_1008947	ENST00000491511.6	chr3_101823612_+	4294	-2731.80	-2731.70	-2802.20
ADediting_1008948	ENST00000491511.6	chr3_101823613_+	4295	-2731.80	-2731.70	-2802.20
ADediting_1008949	ENST00000491511.6	chr3_101823630_+	4312	-2731.00	-2731.70	-2802.20
ADediting_1008950	ENST00000491511.6	chr3_101823650_+	4332	-2735.90	-2731.70	-2802.20
ADediting_1008951	ENST00000491511.6	chr3_101823657_+	4339	-2732.30	-2731.70	-2802.20
ADediting_1008952	ENST00000491511.6	chr3_101823666_+	4348	-2733.40	-2731.70	-2802.20
ADediting_1008953	ENST00000491511.6	chr3_101823667_+	4349	-2736.00	-2731.70	-2802.20
ADediting_1008954	ENST00000491511.6	chr3_101823671_+	4353	-2735.10	-2731.70	-2802.20
ADediting_1008955	ENST00000491511.6	chr3_101823685_+	4367	-2731.90	-2731.70	-2802.20
ADediting_1008956	ENST00000491511.6	chr3_101823690_+	4372	-2731.50	-2731.70	-2802.20
ADediting_1643141	ENST00000491511.6	chr3_101823693_+	4375	-2731.60	-2731.70	-2802.20
ADediting_1008957	ENST00000491511.6	chr3_101823728_+	4410	-2735.10	-2731.70	-2802.20
ADediting_1008958	ENST00000491511.6	chr3_101826762_+	7444	-2730.40	-2731.70	-2802.20
ADediting_1008959	ENST00000491511.6	chr3_101826778_+	7460	-2731.80	-2731.70	-2802.20
ADediting_1008960	ENST00000491511.6	chr3_101826779_+	7461	-2731.70	-2731.70	-2802.20
ADediting_1008961	ENST00000491511.6	chr3_101826824_+	7506	-2731.90	-2731.70	-2802.20
ADediting_1008962	ENST00000491511.6	chr3_101826825_+	7507	-2735.20	-2731.70	-2802.20
ADediting_1008963	ENST00000491511.6	chr3_101826832_+	7514	-2731.50	-2731.70	-2802.20
ADediting_1008964	ENST00000491511.6	chr3_101826869_+	7551	-2733.00	-2731.70	-2802.20
ADediting_1008965	ENST00000491511.6	chr3_101826878_+	7560	-2731.70	-2731.70	-2802.20
ADediting_1008966	ENST00000491511.6	chr3_101826881_+	7563	-2731.80	-2731.70	-2802.20
ADediting_1008967	ENST00000491511.6	chr3_101826882_+	7564	-2732.90	-2731.70	-2802.20
ADediting_1008968	ENST00000491511.6	chr3_101826883_+	7565	-2734.50	-2731.70	-2802.20
ADediting_1008969	ENST00000491511.6	chr3_101826884_+	7566	-2734.60	-2731.70	-2802.20
ADediting_1008970	ENST00000491511.6	chr3_101826886_+	7568	-2733.50	-2731.70	-2802.20
ADediting_1008971	ENST00000491511.6	chr3_101826890_+	7572	-2731.80	-2731.70	-2802.20
ADediting_1008972	ENST00000491511.6	chr3_101826902_+	7584	-2731.70	-2731.70	-2802.20
ADediting_1008973	ENST00000491511.6	chr3_101826913_+	7595	-2734.90	-2731.70	-2802.20
ADediting_1008974	ENST00000491511.6	chr3_101826922_+	7604	-2731.70	-2731.70	-2802.20
ADediting_1643142	ENST00000491511.6	chr3_101826944_+	7626	-2734.80	-2731.70	-2802.20
ADediting_1008975	ENST00000491511.6	chr3_101826953_+	7635	-2730.80	-2731.70	-2802.20
ADediting_1008976	ENST00000491511.6	chr3_101826954_+	7636	-2738.40	-2731.70	-2802.20
ADediting_1008977	ENST00000491511.6	chr3_101827024_+	7706	-2731.40	-2731.70	-2802.20
ADediting_1008874	ENST00000477909.5	chr3_101782688_+	614	-1012.80	-1012.50	-1014.10
ADediting_1008875	ENST00000477909.5	chr3_101782731_+	657	-1013.80	-1012.50	-1014.10

RNA A-to-I editing in lncRNA.

ADeditom_ID

ENST

Editing_Information

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for NXPE3

Correlation between ADAR gene expression and RNA editing frequency

Tissue	ADeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
CER	ADediting_1008934	chr3_101823506_+	4.29217990595095e-09	0.456587323383628	5.83116270024963e-10	0.478617137885278	0.00642816890195778	0.221584334193725
CER	ADediting_1008945	chr3_101823592_+	9.2417918133365e-05	0.313749965041332	0.000147813648995634	0.304973969933478	0.000558568199321668	0.278504597823965
PG	ADediting_1008946	chr3_101823609_+	0.0806409665183497	-0.128429498230061	0.0115299086292723	-0.184877759947831	2.00906017919052e-05	0.307123682359525

Correlation between ADAR gene expression and this gene's expression

Tissue	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
DLPFC	2.09661114708226e-15	0.430318966142119	6.71364317378644e-05	0.224413917862252	2.12809013697471e-56	0.746330793781176
AC	1.26559341761206e-74	0.860578014352718	9.20500064346489e-65	0.829791412272954	2.54483472258033e-08	0.34324783001025
PCC	6.99526159751016e-31	0.712355329572504	3.44789754671605e-39	0.772894418821567	0.000653205406528558	0.244482013837955
CER	1.14095563133275e-54	0.898117704188192	2.02244055316919e-30	0.767856407189872	0.00044349645258096	0.28328615684062
TCX	5.435333311759e-15	0.582327439182454	0.276463885413116	0.0894290397820881	1.50623171429124e-21	0.678240464774688
FP	2.04161948039137e-31	0.734218649427027	2.30031602928508e-18	0.594111303017079	1.1141579148801e-11	0.480697667815188
IFG	1.04635329830584e-05	0.759986105560053	0.00349816489369456	0.561435441259222	0.00317746634314841	0.566136634063011
PG	8.70999236959886e-61	0.87803206469325	3.40971731081818e-23	0.644230950300845	0.0168442922289378	0.17507433996404
STG	2.48576459413321e-13	0.694031421864741	3.78539753727232e-07	0.520881067756857	0.00114805714907648	0.348781267065501

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Relation with AD stages for NXPE3

Correlation between AD stages and RNA editing frequency

Tissue	ADeditomID	position	P-val	Coeff.
CER	ADediting_1008934	chr3_101823506_+	6.17099551026626e-06	0.419611351599134
IFG	ADediting_1008935	chr3_101823511_+	0.0182579002395029	-0.468187937896611

Correlation between AD stages and this gene's expression

Tissue	P-val	Coeff.
CER	9.85510962024352e-05	0.365890829402409
TCX	9.71132606709998e-07	0.454779127230745

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RelatedDrugs for NXPE3

Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for NXPE3

Diseases associated with this gene.
(DisGeNet 4.0)

Gene

Disease ID

Disease name

# pubmeds

Source

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Statistics

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Gene summary for NXPE3

RNA A-to-I events for NXPE3

RNA editing positional annotations for NXPE3 using Annovar

RNA A-to-I editing events in the alternative splicing sites for NXPE3

Differntial gene expression between RNA A-to-I edited versus non-edited samples for NXPE3

Protein coding region RNA A-to-I editings for NXPE3

The effects of the RNA editing to the miRNA binding sites for NXPE3

The effects of the RNA editing to the stability of the RNA structures for NXPE3

Relation with ADAR for NXPE3

Relation with AD stages for NXPE3

RelatedDrugs for NXPE3

RelatedDiseases for NXPE3

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited versus non-edited samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with AD stages
	Related drugs with this gene
	Related diseases with this gene