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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for SYNGR1 |
 Gene summary |
| Gene information | Gene symbol | SYNGR1 | Gene ID | 9145 |
| Gene name | synaptogyrin 1 | |
| Synonyms | - | |
| Cytomap | 22q13.1 | |
| Type of gene | protein-coding | |
| Description | synaptogyrin-1 | |
| Modification date | 20200313 | |
| UniProtAcc | O43759, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
Top |
RNA A-to-I events for SYNGR1 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA editing frequencies across three data sets. |
 |
| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA A-to-I editing events in AD. |
| ADediting_992532(39353912, +), ADediting_992533(39353944, +), ADediting_992534(39353989, +), ADediting_992535(39354003, +), ADediting_992536(39354044, +), ADediting_992537(39354047, +), ADediting_992538(39354124, +), ADediting_992539(39354562, +), ADediting_992540(39354692, +), ADediting_992541(39354697, +), ADediting_992542(39354719, +), ADediting_992543(39354796, +), ADediting_992544(39354827, +), ADediting_992545(39355740, +), ADediting_992546(39355762, +), ADediting_992547(39355864, +), ADediting_992548(39355898, +), ADediting_992549(39355938, +), ADediting_992550(39355939, +), ADediting_992551(39355960, +), ADediting_992552(39355969, +), ADediting_992553(39356111, +), ADediting_992554(39356136, +), ADediting_992555(39356167, +), ADediting_992556(39356227, +), ADediting_992557(39356238, +), ADediting_992558(39356275, +), ADediting_992559(39356289, +), ADediting_992560(39356290, +), ADediting_992561(39356316, +), ADediting_992562(39356317, +), ADediting_992563(39356329, +), ADediting_992564(39356994, +), ADediting_992565(39356996, +), ADediting_992566(39357002, +), ADediting_992567(39357003, +), ADediting_992568(39357024, +), ADediting_992569(39357062, +), ADediting_992570(39357082, +), ADediting_992571(39357096, +), ADediting_992572(39357097, +), ADediting_992573(39357098, +), ADediting_992574(39357099, +), ADediting_992575(39357160, +), ADediting_992576(39357215, +), ADediting_992577(39357216, +), ADediting_992578(39357245, +), ADediting_992579(39357253, +), ADediting_992580(39359006, +), ADediting_992581(39359367, +), ADediting_992582(39361484, +), ADediting_992583(39361487, +), ADediting_992584(39361497, +), ADediting_992585(39361507, +), ADediting_992586(39361544, +), ADediting_992587(39361560, +), ADediting_992588(39361595, +), ADediting_992589(39361622, +), ADediting_992590(39361634, +), ADediting_992591(39362068, +), ADediting_992592(39365878, +), ADediting_992593(39365881, +), ADediting_992594(39365887, +), ADediting_992595(39365936, +), ADediting_992596(39366041, +), ADediting_992597(39366084, +), ADediting_992598(39366098, +), ADediting_992599(39366101, +), ADediting_992600(39366145, +), ADediting_992601(39366148, +), ADediting_992602(39366162, +), ADediting_992603(39366165, +), ADediting_992604(39366185, +), ADediting_992605(39366224, +), ADediting_992606(39366232, +), ADediting_992607(39366250, +), ADediting_992608(39366251, +), ADediting_992609(39366263, +), ADediting_992610(39366374, +), ADediting_992611(39366390, +), ADediting_992612(39366399, +), ADediting_992613(39366412, +), ADediting_992614(39366451, +), ADediting_992615(39366470, +), ADediting_992616(39366475, +), ADediting_992617(39366488, +), ADediting_992618(39366499, +), ADediting_992619(39366539, +), ADediting_992620(39366561, +), ADediting_992621(39366567, +), ADediting_992622(39366581, +), ADediting_992623(39366596, +), ADediting_992624(39367729, +), ADediting_992625(39367780, +), ADediting_992626(39367783, +), ADediting_992627(39369426, +), ADediting_992628(39370217, +), ADediting_992629(39370231, +), ADediting_992630(39370270, +), ADediting_992631(39370337, +), ADediting_992632(39370395, +), ADediting_992633(39370718, +), ADediting_992634(39370747, +), ADediting_992635(39370757, +), ADediting_992636(39370779, +), ADediting_992637(39370810, +), ADediting_992638(39370830, +), ADediting_992639(39370835, +), ADediting_992640(39370855, +), ADediting_992641(39370864, +), ADediting_992642(39370895, +), ADediting_992643(39371219, +), ADediting_992644(39371222, +), ADediting_992645(39371252, +), ADediting_992646(39371281, +), ADediting_992647(39371287, +), ADediting_992648(39371315, +), ADediting_992649(39371316, +), ADediting_992650(39371321, +), ADediting_992651(39371324, +), ADediting_992652(39371355, +), ADediting_992653(39371433, +), ADediting_992654(39371571, +), ADediting_992655(39371605, +), ADediting_992656(39371620, +), ADediting_992657(39371635, +), ADediting_992658(39371653, +), ADediting_992659(39371669, +), ADediting_992660(39371671, +), ADediting_992661(39371874, +), ADediting_992662(39372175, +), ADediting_992663(39372293, +), ADediting_992664(39372338, +), ADediting_992665(39372383, +), ADediting_992666(39372393, +), ADediting_992667(39372509, +), ADediting_992668(39372570, +), ADediting_992669(39372658, +), ADediting_992670(39372678, +), ADediting_992671(39373616, +), ADediting_992672(39373621, +), ADediting_992673(39379387, +), ADediting_992674(39379405, +), ADediting_992675(39379414, +), ADediting_992676(39379419, +), ADediting_992677(39379457, +), ADediting_992678(39379472, +), ADediting_992679(39379483, +), ADediting_992680(39379484, +), ADediting_992681(39379487, +), ADediting_992682(39379513, +), ADediting_992683(39379514, +), ADediting_992684(39379523, +), ADediting_992685(39379540, +), ADediting_992686(39379546, +), ADediting_992687(39379549, +), ADediting_992688(39379555, +), ADediting_992689(39379566, +), ADediting_992690(39379616, +), ADediting_992691(39379655, +), ADediting_992692(39379656, +), ADediting_992693(39380421, +), ADediting_992694(39380427, +), ADediting_992695(39380435, +), ADediting_992696(39380459, +), ADediting_992697(39380483, +), ADediting_992698(39380489, +), ADediting_992699(39380493, +), ADediting_992700(39380494, +), ADediting_992701(39380502, +), ADediting_992702(39380519, +), ADediting_992703(39380529, +), ADediting_992704(39380531, +), ADediting_992705(39380555, +), ADediting_992706(39380582, +), ADediting_992707(39380652, +), ADediting_992708(39380669, +), ADediting_992709(39380700, +), ADediting_992710(39380701, +), ADediting_992711(39380760, +), ADediting_992712(39380786, +), ADediting_992713(39380804, +), ADediting_992714(39380859, +), ADediting_992715(39380868, +), ADediting_992716(39380883, +), ADediting_992717(39381049, +), ADediting_992718(39381050, +), ADediting_992719(39381053, +), ADediting_992720(39381062, +), ADediting_992721(39381076, +), ADediting_992722(39381077, +), ADediting_992723(39381091, +), ADediting_1570723(39353919, +), ADediting_1570724(39359591, +), ADediting_1570725(39361541, +), ADediting_1570726(39362048, +), ADediting_1570727(39366460, +), ADediting_1570728(39366487, +), ADediting_1570729(39367764, +), ADediting_1570730(39367773, +), ADediting_1570731(39367778, +), ADediting_1570732(39367788, +), ADediting_1570733(39367802, +), ADediting_1570734(39370195, +), ADediting_1570735(39371318, +), ADediting_1570736(39371319, +), ADediting_1570737(39371604, +), ADediting_1570738(39371615, +), ADediting_1570739(39371632, +), ADediting_1570740(39371640, +), ADediting_1570741(39372322, +), ADediting_1570742(39372339, +), ADediting_1570743(39372342, +), ADediting_1570744(39373217, +), ADediting_1570745(39373233, +), ADediting_1570746(39373631, +), ADediting_1570747(39373663, +), |
Top |
RNA editing positional annotations for SYNGR1 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_992532 | chr22_39353912_+ | intronic |
| ADediting_992533 | chr22_39353944_+ | intronic |
| ADediting_992534 | chr22_39353989_+ | intronic |
| ADediting_992535 | chr22_39354003_+ | intronic |
| ADediting_992536 | chr22_39354044_+ | intronic |
| ADediting_992537 | chr22_39354047_+ | intronic |
| ADediting_992538 | chr22_39354124_+ | intronic |
| ADediting_992539 | chr22_39354562_+ | intronic |
| ADediting_992540 | chr22_39354692_+ | intronic |
| ADediting_992541 | chr22_39354697_+ | intronic |
| ADediting_992542 | chr22_39354719_+ | intronic |
| ADediting_992543 | chr22_39354796_+ | intronic |
| ADediting_992544 | chr22_39354827_+ | intronic |
| ADediting_992545 | chr22_39355740_+ | intronic |
| ADediting_992546 | chr22_39355762_+ | intronic |
| ADediting_992547 | chr22_39355864_+ | intronic |
| ADediting_992548 | chr22_39355898_+ | intronic |
| ADediting_992549 | chr22_39355938_+ | intronic |
| ADediting_992550 | chr22_39355939_+ | intronic |
| ADediting_992551 | chr22_39355960_+ | intronic |
| ADediting_992552 | chr22_39355969_+ | intronic |
| ADediting_992553 | chr22_39356111_+ | intronic |
| ADediting_992554 | chr22_39356136_+ | intronic |
| ADediting_992555 | chr22_39356167_+ | intronic |
| ADediting_992556 | chr22_39356227_+ | intronic |
| ADediting_992557 | chr22_39356238_+ | intronic |
| ADediting_992558 | chr22_39356275_+ | intronic |
| ADediting_992559 | chr22_39356289_+ | intronic |
| ADediting_992560 | chr22_39356290_+ | intronic |
| ADediting_992561 | chr22_39356316_+ | intronic |
| ADediting_992562 | chr22_39356317_+ | intronic |
| ADediting_992563 | chr22_39356329_+ | intronic |
| ADediting_992564 | chr22_39356994_+ | intronic |
| ADediting_992565 | chr22_39356996_+ | intronic |
| ADediting_992566 | chr22_39357002_+ | intronic |
| ADediting_992567 | chr22_39357003_+ | intronic |
| ADediting_992568 | chr22_39357024_+ | intronic |
| ADediting_992569 | chr22_39357062_+ | intronic |
| ADediting_992570 | chr22_39357082_+ | intronic |
| ADediting_992571 | chr22_39357096_+ | intronic |
| ADediting_992572 | chr22_39357097_+ | intronic |
| ADediting_992573 | chr22_39357098_+ | intronic |
| ADediting_992574 | chr22_39357099_+ | intronic |
| ADediting_992575 | chr22_39357160_+ | intronic |
| ADediting_992576 | chr22_39357215_+ | intronic |
| ADediting_992577 | chr22_39357216_+ | intronic |
| ADediting_992578 | chr22_39357245_+ | intronic |
| ADediting_992579 | chr22_39357253_+ | intronic |
| ADediting_992580 | chr22_39359006_+ | intronic |
| ADediting_992581 | chr22_39359367_+ | intronic |
| ADediting_992582 | chr22_39361484_+ | intronic |
| ADediting_992583 | chr22_39361487_+ | intronic |
| ADediting_992584 | chr22_39361497_+ | intronic |
| ADediting_992585 | chr22_39361507_+ | intronic |
| ADediting_992586 | chr22_39361544_+ | intronic |
| ADediting_992587 | chr22_39361560_+ | intronic |
| ADediting_992588 | chr22_39361595_+ | intronic |
| ADediting_992589 | chr22_39361622_+ | intronic |
| ADediting_992590 | chr22_39361634_+ | intronic |
| ADediting_992591 | chr22_39362068_+ | intronic |
| ADediting_992592 | chr22_39365878_+ | intronic |
| ADediting_992593 | chr22_39365881_+ | intronic |
| ADediting_992594 | chr22_39365887_+ | intronic |
| ADediting_992595 | chr22_39365936_+ | intronic |
| ADediting_992596 | chr22_39366041_+ | intronic |
| ADediting_992597 | chr22_39366084_+ | intronic |
| ADediting_992598 | chr22_39366098_+ | intronic |
| ADediting_992599 | chr22_39366101_+ | intronic |
| ADediting_992600 | chr22_39366145_+ | intronic |
| ADediting_992601 | chr22_39366148_+ | intronic |
| ADediting_992602 | chr22_39366162_+ | intronic |
| ADediting_992603 | chr22_39366165_+ | intronic |
| ADediting_992604 | chr22_39366185_+ | intronic |
| ADediting_992605 | chr22_39366224_+ | intronic |
| ADediting_992606 | chr22_39366232_+ | intronic |
| ADediting_992607 | chr22_39366250_+ | intronic |
| ADediting_992608 | chr22_39366251_+ | intronic |
| ADediting_992609 | chr22_39366263_+ | intronic |
| ADediting_992610 | chr22_39366374_+ | intronic |
| ADediting_992611 | chr22_39366390_+ | intronic |
| ADediting_992612 | chr22_39366399_+ | intronic |
| ADediting_992613 | chr22_39366412_+ | intronic |
| ADediting_992614 | chr22_39366451_+ | intronic |
| ADediting_992615 | chr22_39366470_+ | intronic |
| ADediting_992616 | chr22_39366475_+ | intronic |
| ADediting_992617 | chr22_39366488_+ | intronic |
| ADediting_992618 | chr22_39366499_+ | intronic |
| ADediting_992619 | chr22_39366539_+ | intronic |
| ADediting_992620 | chr22_39366561_+ | intronic |
| ADediting_992621 | chr22_39366567_+ | intronic |
| ADediting_992622 | chr22_39366581_+ | intronic |
| ADediting_992623 | chr22_39366596_+ | intronic |
| ADediting_992624 | chr22_39367729_+ | intronic |
| ADediting_992625 | chr22_39367780_+ | intronic |
| ADediting_992626 | chr22_39367783_+ | intronic |
| ADediting_992627 | chr22_39369426_+ | intronic |
| ADediting_992628 | chr22_39370217_+ | intronic |
| ADediting_992629 | chr22_39370231_+ | intronic |
| ADediting_992630 | chr22_39370270_+ | intronic |
| ADediting_992631 | chr22_39370337_+ | intronic |
| ADediting_992632 | chr22_39370395_+ | intronic |
| ADediting_992633 | chr22_39370718_+ | intronic |
| ADediting_992634 | chr22_39370747_+ | intronic |
| ADediting_992635 | chr22_39370757_+ | intronic |
| ADediting_992636 | chr22_39370779_+ | intronic |
| ADediting_992637 | chr22_39370810_+ | intronic |
| ADediting_992638 | chr22_39370830_+ | intronic |
| ADediting_992639 | chr22_39370835_+ | intronic |
| ADediting_992640 | chr22_39370855_+ | intronic |
| ADediting_992641 | chr22_39370864_+ | intronic |
| ADediting_992642 | chr22_39370895_+ | intronic |
| ADediting_992643 | chr22_39371219_+ | intronic |
| ADediting_992644 | chr22_39371222_+ | intronic |
| ADediting_992645 | chr22_39371252_+ | intronic |
| ADediting_992646 | chr22_39371281_+ | intronic |
| ADediting_992647 | chr22_39371287_+ | intronic |
| ADediting_992648 | chr22_39371315_+ | intronic |
| ADediting_992649 | chr22_39371316_+ | intronic |
| ADediting_992650 | chr22_39371321_+ | intronic |
| ADediting_992651 | chr22_39371324_+ | intronic |
| ADediting_992652 | chr22_39371355_+ | intronic |
| ADediting_992653 | chr22_39371433_+ | intronic |
| ADediting_992654 | chr22_39371571_+ | intronic |
| ADediting_992655 | chr22_39371605_+ | intronic |
| ADediting_992656 | chr22_39371620_+ | intronic |
| ADediting_992657 | chr22_39371635_+ | intronic |
| ADediting_992658 | chr22_39371653_+ | intronic |
| ADediting_992659 | chr22_39371669_+ | intronic |
| ADediting_992660 | chr22_39371671_+ | intronic |
| ADediting_992661 | chr22_39371874_+ | intronic |
| ADediting_992662 | chr22_39372175_+ | intronic |
| ADediting_992663 | chr22_39372293_+ | intronic |
| ADediting_992664 | chr22_39372338_+ | intronic |
| ADediting_992665 | chr22_39372383_+ | intronic |
| ADediting_992666 | chr22_39372393_+ | intronic |
| ADediting_992667 | chr22_39372509_+ | intronic |
| ADediting_992668 | chr22_39372570_+ | intronic |
| ADediting_992669 | chr22_39372658_+ | intronic |
| ADediting_992670 | chr22_39372678_+ | intronic |
| ADediting_992671 | chr22_39373616_+ | intronic |
| ADediting_992672 | chr22_39373621_+ | intronic |
| ADediting_992673 | chr22_39379387_+ | intronic |
| ADediting_992674 | chr22_39379405_+ | intronic |
| ADediting_992675 | chr22_39379414_+ | intronic |
| ADediting_992676 | chr22_39379419_+ | intronic |
| ADediting_992677 | chr22_39379457_+ | intronic |
| ADediting_992678 | chr22_39379472_+ | intronic |
| ADediting_992679 | chr22_39379483_+ | intronic |
| ADediting_992680 | chr22_39379484_+ | intronic |
| ADediting_992681 | chr22_39379487_+ | intronic |
| ADediting_992682 | chr22_39379513_+ | intronic |
| ADediting_992683 | chr22_39379514_+ | intronic |
| ADediting_992684 | chr22_39379523_+ | intronic |
| ADediting_992685 | chr22_39379540_+ | intronic |
| ADediting_992686 | chr22_39379546_+ | intronic |
| ADediting_992687 | chr22_39379549_+ | intronic |
| ADediting_992688 | chr22_39379555_+ | intronic |
| ADediting_992689 | chr22_39379566_+ | intronic |
| ADediting_992690 | chr22_39379616_+ | ncRNA_exonic |
| ADediting_992691 | chr22_39379655_+ | ncRNA_exonic |
| ADediting_992692 | chr22_39379656_+ | ncRNA_exonic |
| ADediting_992693 | chr22_39380421_+ | intronic |
| ADediting_992694 | chr22_39380427_+ | intronic |
| ADediting_992695 | chr22_39380435_+ | intronic |
| ADediting_992696 | chr22_39380459_+ | intronic |
| ADediting_992697 | chr22_39380483_+ | intronic |
| ADediting_992698 | chr22_39380489_+ | intronic |
| ADediting_992699 | chr22_39380493_+ | intronic |
| ADediting_992700 | chr22_39380494_+ | intronic |
| ADediting_992701 | chr22_39380502_+ | intronic |
| ADediting_992702 | chr22_39380519_+ | intronic |
| ADediting_992703 | chr22_39380529_+ | intronic |
| ADediting_992704 | chr22_39380531_+ | intronic |
| ADediting_992705 | chr22_39380555_+ | intronic |
| ADediting_992706 | chr22_39380582_+ | intronic |
| ADediting_992707 | chr22_39380652_+ | intronic |
| ADediting_992708 | chr22_39380669_+ | intronic |
| ADediting_992709 | chr22_39380700_+ | intronic |
| ADediting_992710 | chr22_39380701_+ | intronic |
| ADediting_992711 | chr22_39380760_+ | intronic |
| ADediting_992712 | chr22_39380786_+ | intronic |
| ADediting_992713 | chr22_39380804_+ | intronic |
| ADediting_992714 | chr22_39380859_+ | intronic |
| ADediting_992715 | chr22_39380868_+ | intronic |
| ADediting_992716 | chr22_39380883_+ | intronic |
| ADediting_992717 | chr22_39381049_+ | intronic |
| ADediting_992718 | chr22_39381050_+ | intronic |
| ADediting_992719 | chr22_39381053_+ | intronic |
| ADediting_992720 | chr22_39381062_+ | intronic |
| ADediting_992721 | chr22_39381076_+ | intronic |
| ADediting_992722 | chr22_39381077_+ | intronic |
| ADediting_992723 | chr22_39381091_+ | intronic |
| ADediting_1570723 | chr22_39353919_+ | intronic |
| ADediting_1570724 | chr22_39359591_+ | intronic |
| ADediting_1570725 | chr22_39361541_+ | intronic |
| ADediting_1570726 | chr22_39362048_+ | intronic |
| ADediting_1570727 | chr22_39366460_+ | intronic |
| ADediting_1570728 | chr22_39366487_+ | intronic |
| ADediting_1570729 | chr22_39367764_+ | intronic |
| ADediting_1570730 | chr22_39367773_+ | intronic |
| ADediting_1570731 | chr22_39367778_+ | intronic |
| ADediting_1570732 | chr22_39367788_+ | intronic |
| ADediting_1570733 | chr22_39367802_+ | intronic |
| ADediting_1570734 | chr22_39370195_+ | intronic |
| ADediting_1570735 | chr22_39371318_+ | intronic |
| ADediting_1570736 | chr22_39371319_+ | intronic |
| ADediting_1570737 | chr22_39371604_+ | intronic |
| ADediting_1570738 | chr22_39371615_+ | intronic |
| ADediting_1570739 | chr22_39371632_+ | intronic |
| ADediting_1570740 | chr22_39371640_+ | intronic |
| ADediting_1570741 | chr22_39372322_+ | intronic |
| ADediting_1570742 | chr22_39372339_+ | intronic |
| ADediting_1570743 | chr22_39372342_+ | intronic |
| ADediting_1570744 | chr22_39373217_+ | intronic |
| ADediting_1570745 | chr22_39373233_+ | intronic |
| ADediting_1570746 | chr22_39373631_+ | intronic |
| ADediting_1570747 | chr22_39373663_+ | intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_992532 | chr22_39353912_+ | SINE | Alu | Name=AluSg4 |
| ADediting_992533 | chr22_39353944_+ | SINE | Alu | Name=AluSg4 |
| ADediting_992534 | chr22_39353989_+ | SINE | Alu | Name=AluSg4 |
| ADediting_992535 | chr22_39354003_+ | SINE | Alu | Name=AluSg4 |
| ADediting_992536 | chr22_39354044_+ | SINE | Alu | Name=AluSg4 |
| ADediting_992537 | chr22_39354047_+ | SINE | Alu | Name=AluSg4 |
| ADediting_992538 | chr22_39354124_+ | SINE | Alu | Name=AluSg4 |
| ADediting_992539 | chr22_39354562_+ | SINE | Alu | Name=AluSq |
| ADediting_992540 | chr22_39354692_+ | SINE | Alu | Name=AluSq |
| ADediting_992541 | chr22_39354697_+ | SINE | Alu | Name=AluSq |
| ADediting_992542 | chr22_39354719_+ | SINE | Alu | Name=AluSq |
| ADediting_992543 | chr22_39354796_+ | SINE | Alu | Name=AluSq |
| ADediting_992544 | chr22_39354827_+ | SINE | Alu | Name=AluSq |
| ADediting_992545 | chr22_39355740_+ | SINE | Alu | Name=AluSq2 |
| ADediting_992546 | chr22_39355762_+ | SINE | Alu | Name=AluSq2 |
| ADediting_992547 | chr22_39355864_+ | SINE | Alu | Name=AluSq2 |
| ADediting_992548 | chr22_39355898_+ | SINE | Alu | Name=AluSq2 |
| ADediting_992549 | chr22_39355938_+ | SINE | Alu | Name=AluSq2 |
| ADediting_992550 | chr22_39355939_+ | SINE | Alu | Name=AluSq2 |
| ADediting_992551 | chr22_39355960_+ | SINE | Alu | Name=AluSq2 |
| ADediting_992552 | chr22_39355969_+ | SINE | Alu | Name=AluSq2 |
| ADediting_992553 | chr22_39356111_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992554 | chr22_39356136_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992555 | chr22_39356167_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992556 | chr22_39356227_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992557 | chr22_39356238_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992558 | chr22_39356275_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992559 | chr22_39356289_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992560 | chr22_39356290_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992561 | chr22_39356316_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992562 | chr22_39356317_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992563 | chr22_39356329_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992564 | chr22_39356994_+ | SINE | Alu | Name=AluSz |
| ADediting_992565 | chr22_39356996_+ | SINE | Alu | Name=AluSz |
| ADediting_992566 | chr22_39357002_+ | SINE | Alu | Name=AluSz |
| ADediting_992567 | chr22_39357003_+ | SINE | Alu | Name=AluSz |
| ADediting_992568 | chr22_39357024_+ | SINE | Alu | Name=AluSz |
| ADediting_992569 | chr22_39357062_+ | SINE | Alu | Name=AluSz |
| ADediting_992570 | chr22_39357082_+ | SINE | Alu | Name=AluSz |
| ADediting_992571 | chr22_39357096_+ | SINE | Alu | Name=AluSz |
| ADediting_992572 | chr22_39357097_+ | SINE | Alu | Name=AluSz |
| ADediting_992573 | chr22_39357098_+ | SINE | Alu | Name=AluSz |
| ADediting_992574 | chr22_39357099_+ | SINE | Alu | Name=AluSz |
| ADediting_992575 | chr22_39357160_+ | SINE | Alu | Name=AluSz |
| ADediting_992576 | chr22_39357215_+ | SINE | Alu | Name=AluSz |
| ADediting_992577 | chr22_39357216_+ | SINE | Alu | Name=AluSz |
| ADediting_992578 | chr22_39357245_+ | SINE | Alu | Name=AluSz |
| ADediting_992579 | chr22_39357253_+ | SINE | Alu | Name=AluSz |
| ADediting_992581 | chr22_39359367_+ | SINE | Alu | Name=AluY |
| ADediting_992582 | chr22_39361484_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992583 | chr22_39361487_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992584 | chr22_39361497_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992585 | chr22_39361507_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992586 | chr22_39361544_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992587 | chr22_39361560_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992588 | chr22_39361595_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992589 | chr22_39361622_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992590 | chr22_39361634_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992591 | chr22_39362068_+ | SINE | Alu | Name=FLAM_C |
| ADediting_992592 | chr22_39365878_+ | SINE | Alu | Name=AluSz |
| ADediting_992593 | chr22_39365881_+ | SINE | Alu | Name=AluSz |
| ADediting_992594 | chr22_39365887_+ | SINE | Alu | Name=AluSz |
| ADediting_992595 | chr22_39365936_+ | SINE | Alu | Name=AluSz |
| ADediting_992596 | chr22_39366041_+ | SINE | Alu | Name=AluJb |
| ADediting_992597 | chr22_39366084_+ | SINE | Alu | Name=AluJb |
| ADediting_992598 | chr22_39366098_+ | SINE | Alu | Name=AluJb |
| ADediting_992599 | chr22_39366101_+ | SINE | Alu | Name=AluJb |
| ADediting_992600 | chr22_39366145_+ | SINE | Alu | Name=AluJb |
| ADediting_992601 | chr22_39366148_+ | SINE | Alu | Name=AluJb |
| ADediting_992602 | chr22_39366162_+ | SINE | Alu | Name=AluJb |
| ADediting_992603 | chr22_39366165_+ | SINE | Alu | Name=AluJb |
| ADediting_992604 | chr22_39366185_+ | SINE | Alu | Name=AluJb |
| ADediting_992605 | chr22_39366224_+ | SINE | Alu | Name=AluJb |
| ADediting_992606 | chr22_39366232_+ | SINE | Alu | Name=AluJb |
| ADediting_992607 | chr22_39366250_+ | SINE | Alu | Name=AluJb |
| ADediting_992608 | chr22_39366251_+ | SINE | Alu | Name=AluJb |
| ADediting_992609 | chr22_39366263_+ | SINE | Alu | Name=AluJb |
| ADediting_992610 | chr22_39366374_+ | SINE | Alu | Name=AluSx |
| ADediting_992611 | chr22_39366390_+ | SINE | Alu | Name=AluSx |
| ADediting_992612 | chr22_39366399_+ | SINE | Alu | Name=AluSx |
| ADediting_992613 | chr22_39366412_+ | SINE | Alu | Name=AluSx |
| ADediting_992614 | chr22_39366451_+ | SINE | Alu | Name=AluSx |
| ADediting_992615 | chr22_39366470_+ | SINE | Alu | Name=AluSx |
| ADediting_992616 | chr22_39366475_+ | SINE | Alu | Name=AluSx |
| ADediting_992617 | chr22_39366488_+ | SINE | Alu | Name=AluSx |
| ADediting_992618 | chr22_39366499_+ | SINE | Alu | Name=AluSx |
| ADediting_992619 | chr22_39366539_+ | SINE | Alu | Name=AluSx |
| ADediting_992620 | chr22_39366561_+ | SINE | Alu | Name=AluSx |
| ADediting_992621 | chr22_39366567_+ | SINE | Alu | Name=AluSx |
| ADediting_992622 | chr22_39366581_+ | SINE | Alu | Name=AluSx |
| ADediting_992623 | chr22_39366596_+ | SINE | Alu | Name=AluSx |
| ADediting_992624 | chr22_39367729_+ | SINE | Alu | Name=AluSx |
| ADediting_992625 | chr22_39367780_+ | SINE | Alu | Name=AluSx |
| ADediting_992626 | chr22_39367783_+ | SINE | Alu | Name=AluSx |
| ADediting_992628 | chr22_39370217_+ | SINE | Alu | Name=AluSc8 |
| ADediting_992629 | chr22_39370231_+ | SINE | Alu | Name=AluSc8 |
| ADediting_992630 | chr22_39370270_+ | SINE | Alu | Name=AluSc8 |
| ADediting_992631 | chr22_39370337_+ | SINE | Alu | Name=AluSc8 |
| ADediting_992632 | chr22_39370395_+ | SINE | Alu | Name=AluSc8 |
| ADediting_992633 | chr22_39370718_+ | SINE | Alu | Name=AluSz |
| ADediting_992634 | chr22_39370747_+ | SINE | Alu | Name=AluSz |
| ADediting_992635 | chr22_39370757_+ | SINE | Alu | Name=AluSz |
| ADediting_992636 | chr22_39370779_+ | SINE | Alu | Name=AluSz |
| ADediting_992637 | chr22_39370810_+ | SINE | Alu | Name=AluSz |
| ADediting_992638 | chr22_39370830_+ | SINE | Alu | Name=AluSz |
| ADediting_992639 | chr22_39370835_+ | SINE | Alu | Name=AluSz |
| ADediting_992640 | chr22_39370855_+ | SINE | Alu | Name=AluSz |
| ADediting_992641 | chr22_39370864_+ | SINE | Alu | Name=AluSz |
| ADediting_992642 | chr22_39370895_+ | SINE | Alu | Name=AluSz |
| ADediting_992643 | chr22_39371219_+ | SINE | Alu | Name=AluSp |
| ADediting_992644 | chr22_39371222_+ | SINE | Alu | Name=AluSp |
| ADediting_992645 | chr22_39371252_+ | SINE | Alu | Name=AluSp |
| ADediting_992646 | chr22_39371281_+ | SINE | Alu | Name=AluSp |
| ADediting_992647 | chr22_39371287_+ | SINE | Alu | Name=AluSp |
| ADediting_992648 | chr22_39371315_+ | SINE | Alu | Name=AluSp |
| ADediting_992649 | chr22_39371316_+ | SINE | Alu | Name=AluSp |
| ADediting_992650 | chr22_39371321_+ | SINE | Alu | Name=AluSp |
| ADediting_992651 | chr22_39371324_+ | SINE | Alu | Name=AluSp |
| ADediting_992652 | chr22_39371355_+ | SINE | Alu | Name=AluSp |
| ADediting_992653 | chr22_39371433_+ | SINE | Alu | Name=AluSp |
| ADediting_992654 | chr22_39371571_+ | SINE | Alu | Name=AluSx3 |
| ADediting_992655 | chr22_39371605_+ | SINE | Alu | Name=AluSx3 |
| ADediting_992656 | chr22_39371620_+ | SINE | Alu | Name=AluSx3 |
| ADediting_992657 | chr22_39371635_+ | SINE | Alu | Name=AluSx3 |
| ADediting_992658 | chr22_39371653_+ | SINE | Alu | Name=AluSx3 |
| ADediting_992659 | chr22_39371669_+ | SINE | Alu | Name=AluSx3 |
| ADediting_992660 | chr22_39371671_+ | SINE | Alu | Name=AluSx3 |
| ADediting_992661 | chr22_39371874_+ | SINE | MIR | Name=MIRb |
| ADediting_992662 | chr22_39372175_+ | SINE | Alu | Name=AluSc8 |
| ADediting_992663 | chr22_39372293_+ | SINE | Alu | Name=AluSc8 |
| ADediting_992664 | chr22_39372338_+ | SINE | Alu | Name=AluSc8 |
| ADediting_992665 | chr22_39372383_+ | SINE | Alu | Name=AluSc8 |
| ADediting_992666 | chr22_39372393_+ | SINE | Alu | Name=AluSc8 |
| ADediting_992667 | chr22_39372509_+ | SINE | Alu | Name=AluSx |
| ADediting_992668 | chr22_39372570_+ | SINE | Alu | Name=AluSx |
| ADediting_992669 | chr22_39372658_+ | SINE | Alu | Name=AluSx |
| ADediting_992670 | chr22_39372678_+ | SINE | Alu | Name=AluSx |
| ADediting_992671 | chr22_39373616_+ | SINE | Alu | Name=AluJb |
| ADediting_992672 | chr22_39373621_+ | SINE | Alu | Name=AluJb |
| ADediting_992673 | chr22_39379387_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992674 | chr22_39379405_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992675 | chr22_39379414_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992676 | chr22_39379419_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992677 | chr22_39379457_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992678 | chr22_39379472_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992679 | chr22_39379483_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992680 | chr22_39379484_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992681 | chr22_39379487_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992682 | chr22_39379513_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992683 | chr22_39379514_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992684 | chr22_39379523_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992685 | chr22_39379540_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992686 | chr22_39379546_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992687 | chr22_39379549_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992688 | chr22_39379555_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992689 | chr22_39379566_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992690 | chr22_39379616_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992691 | chr22_39379655_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992692 | chr22_39379656_+ | SINE | Alu | Name=AluSx1 |
| ADediting_992693 | chr22_39380421_+ | SINE | Alu | Name=AluJo |
| ADediting_992694 | chr22_39380427_+ | SINE | Alu | Name=AluJo |
| ADediting_992695 | chr22_39380435_+ | SINE | Alu | Name=AluJo |
| ADediting_992696 | chr22_39380459_+ | SINE | Alu | Name=AluJo |
| ADediting_992697 | chr22_39380483_+ | SINE | Alu | Name=AluJo |
| ADediting_992698 | chr22_39380489_+ | SINE | Alu | Name=AluJo |
| ADediting_992699 | chr22_39380493_+ | SINE | Alu | Name=AluJo |
| ADediting_992700 | chr22_39380494_+ | SINE | Alu | Name=AluJo |
| ADediting_992701 | chr22_39380502_+ | SINE | Alu | Name=AluJo |
| ADediting_992702 | chr22_39380519_+ | SINE | Alu | Name=AluJo |
| ADediting_992703 | chr22_39380529_+ | SINE | Alu | Name=AluJo |
| ADediting_992704 | chr22_39380531_+ | SINE | Alu | Name=AluJo |
| ADediting_992705 | chr22_39380555_+ | SINE | Alu | Name=AluJo |
| ADediting_992706 | chr22_39380582_+ | SINE | Alu | Name=AluJo |
| ADediting_992707 | chr22_39380652_+ | SINE | Alu | Name=AluSz |
| ADediting_992708 | chr22_39380669_+ | SINE | Alu | Name=AluSz |
| ADediting_992709 | chr22_39380700_+ | SINE | Alu | Name=AluSz |
| ADediting_992710 | chr22_39380701_+ | SINE | Alu | Name=AluSz |
| ADediting_992711 | chr22_39380760_+ | SINE | Alu | Name=AluSz |
| ADediting_992712 | chr22_39380786_+ | SINE | Alu | Name=AluSz |
| ADediting_992713 | chr22_39380804_+ | SINE | Alu | Name=AluSz |
| ADediting_992714 | chr22_39380859_+ | SINE | Alu | Name=AluSz |
| ADediting_992715 | chr22_39380868_+ | SINE | Alu | Name=AluSz |
| ADediting_992716 | chr22_39380883_+ | SINE | Alu | Name=AluSz |
| ADediting_992717 | chr22_39381049_+ | SINE | Alu | Name=AluJr |
| ADediting_992718 | chr22_39381050_+ | SINE | Alu | Name=AluJr |
| ADediting_992719 | chr22_39381053_+ | SINE | Alu | Name=AluJr |
| ADediting_992720 | chr22_39381062_+ | SINE | Alu | Name=AluJr |
| ADediting_992721 | chr22_39381076_+ | SINE | Alu | Name=AluJr |
| ADediting_992722 | chr22_39381077_+ | SINE | Alu | Name=AluJr |
| ADediting_992723 | chr22_39381091_+ | SINE | Alu | Name=AluJr |
| ADediting_1570723 | chr22_39353919_+ | SINE | Alu | Name=AluSg4 |
| ADediting_1570724 | chr22_39359591_+ | SINE | Alu | Name=AluY |
| ADediting_1570725 | chr22_39361541_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1570726 | chr22_39362048_+ | SINE | Alu | Name=FLAM_C |
| ADediting_1570727 | chr22_39366460_+ | SINE | Alu | Name=AluSx |
| ADediting_1570728 | chr22_39366487_+ | SINE | Alu | Name=AluSx |
| ADediting_1570729 | chr22_39367764_+ | SINE | Alu | Name=AluSx |
| ADediting_1570730 | chr22_39367773_+ | SINE | Alu | Name=AluSx |
| ADediting_1570731 | chr22_39367778_+ | SINE | Alu | Name=AluSx |
| ADediting_1570732 | chr22_39367788_+ | SINE | Alu | Name=AluSx |
| ADediting_1570733 | chr22_39367802_+ | SINE | Alu | Name=AluSx |
| ADediting_1570734 | chr22_39370195_+ | SINE | Alu | Name=AluSc8 |
| ADediting_1570735 | chr22_39371318_+ | SINE | Alu | Name=AluSp |
| ADediting_1570736 | chr22_39371319_+ | SINE | Alu | Name=AluSp |
| ADediting_1570737 | chr22_39371604_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1570738 | chr22_39371615_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1570739 | chr22_39371632_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1570740 | chr22_39371640_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1570741 | chr22_39372322_+ | SINE | Alu | Name=AluSc8 |
| ADediting_1570742 | chr22_39372339_+ | SINE | Alu | Name=AluSc8 |
| ADediting_1570743 | chr22_39372342_+ | SINE | Alu | Name=AluSc8 |
| ADediting_1570744 | chr22_39373217_+ | SINE | Alu | Name=AluSg |
| ADediting_1570745 | chr22_39373233_+ | SINE | Alu | Name=AluSg |
| ADediting_1570746 | chr22_39373631_+ | SINE | Alu | Name=AluJb |
| ADediting_1570747 | chr22_39373663_+ | SINE | Alu | Name=AluJb |
Top |
RNA A-to-I editing events in the alternative splicing sites for SYNGR1 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for SYNGR1 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
Top |
Protein coding region RNA A-to-I editings for SYNGR1 |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
Top |
The effects of the RNA editing to the miRNA binding sites for SYNGR1 |
| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1337757 | chr7_5495852_- | ENSG00000100321.15 | ENST00000328933.10 | SYNGR1-203 | hsa-miR-589-3p | chr22 | 39382408 | 39382414 | 7mer-m8 | 39382391 | 39382415 | 165 | -33.74 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000100321.15 | ENST00000328933.10 | SYNGR1-203 | hsa-miR-589-3p | chr22 | 39382816 | 39382822 | 7mer-m8 | 39382807 | 39382830 | 161 | -21.18 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000100321.15 | ENST00000328933.10 | SYNGR1-203 | hsa-miR-589-3p | chr22 | 39382823 | 39382829 | 7mer-m8 | 39382807 | 39382830 | 161 | -21.18 |
| ADediting_1391023 | chr8_140732605_- | ENSG00000100321.15 | ENST00000318801.8 | SYNGR1-202 | hsa-miR-151a-3p | chr22 | 39378252 | 39378258 | 7mer-m8 | 39378239 | 39378259 | 157 | -22.23 |
| ADediting_1391023 | chr8_140732605_- | ENSG00000100321.15 | ENST00000328933.10 | SYNGR1-203 | hsa-miR-151a-3p | chr22 | 39382063 | 39382069 | 7mer-m8 | 39382049 | 39382070 | 149 | -25.54 |
| ADediting_1391023 | chr8_140732605_- | ENSG00000100321.15 | ENST00000381535.4 | SYNGR1-204 | hsa-miR-151a-3p | chr22 | 39378252 | 39378258 | 7mer-m8 | 39378239 | 39378259 | 157 | -22.23 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000100321.15 | ENST00000318801.8 | SYNGR1-202 | hsa-miR-381-3p | chr22 | 39377718 | 39377724 | 7mer-m8 | 39377703 | 39377725 | 157 | -26.32 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000100321.15 | ENST00000381535.4 | SYNGR1-204 | hsa-miR-381-3p | chr22 | 39377718 | 39377724 | 7mer-m8 | 39377703 | 39377725 | 157 | -26.32 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000100321.15 | ENST00000328933.10 | SYNGR1-203 | hsa-miR-641 | chr22 | 39385245 | 39385251 | 7mer-m8 | 39385230 | 39385252 | 162 | -18.59 |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1337757 | chr7_5495852_- | ENSG00000100321.15 | ENST00000328933.10 | SYNGR1-203 | hsa-miR-589-3p | chr22 | 39382695 | 39382701 | 7mer-m8 | 39382682 | 39382702 | 141 | -13.55 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000100321.15 | ENST00000328933.10 | SYNGR1-203 | hsa-miR-589-3p | chr22 | 39384157 | 39384164 | 8mer-1a | 39384141 | 39384164 | 148 | -15.71 |
| ADediting_1337758 | chr7_5495892_- | ENSG00000100321.15 | ENST00000318801.8 | SYNGR1-202 | hsa-miR-589-5p | chr22 | 39377825 | 39377831 | 7mer-m8 | 39377811 | 39377832 | 141 | -11.28 |
| ADediting_1337758 | chr7_5495892_- | ENSG00000100321.15 | ENST00000381535.4 | SYNGR1-204 | hsa-miR-589-5p | chr22 | 39377825 | 39377831 | 7mer-m8 | 39377811 | 39377832 | 141 | -11.28 |
| ADediting_291761 | chr11_93733708_- | ENSG00000100321.15 | ENST00000318801.8 | SYNGR1-202 | hsa-miR-1304-3p | chr22 | 39377734 | 39377740 | 7mer-m8 | 39377719 | 39377741 | 142 | -14.76 |
| ADediting_291761 | chr11_93733708_- | ENSG00000100321.15 | ENST00000381535.4 | SYNGR1-204 | hsa-miR-1304-3p | chr22 | 39377734 | 39377740 | 7mer-m8 | 39377719 | 39377741 | 142 | -14.76 |
| ADediting_496066 | chr15_66496985_- | ENSG00000100321.15 | ENST00000328933.10 | SYNGR1-203 | hsa-miR-4512 | chr22 | 39384327 | 39384333 | 7mer-m8 | 39384313 | 39384334 | 148 | -29.87 |
| Differentially expressed gene-miRNA network |
Top |
The effects of the RNA editing to the stability of the RNA structures for SYNGR1 |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
Top |
Relation with ADAR for SYNGR1 |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| CER | ADediting_992581 | chr22_39359367_+ | 0.0782844334145615 | 0.144216770698491 | 0.0001529155571252 | 0.304329065832688 | 0.0085816367618114 | 0.213898414714724 |
| CER | ADediting_992584 | chr22_39361497_+ | 0.0213857398660893 | 0.18778067064274 | 9.89254795539884e-05 | 0.312495250800384 | 0.00198738162197662 | 0.25052681002472 |
| CER | ADediting_992590 | chr22_39361634_+ | 0.000857429728612131 | 0.269387679616432 | 2.16260665915276e-06 | 0.375699694143835 | 0.00716436045526641 | 0.218729143961698 |
| DLPFC | ADediting_992605 | chr22_39366224_+ | 0.00167375080879719 | 0.177789663326657 | 0.192162606363251 | 0.0742717419903202 | 2.07098627688201e-12 | 0.385292286023927 |
| DLPFC | ADediting_992620 | chr22_39366561_+ | 0.20395755311468 | 0.0723491053610672 | 0.267739834411405 | -0.0631384567071888 | 1.14565883702593e-08 | 0.317050530489287 |
| DLPFC | ADediting_992639 | chr22_39370835_+ | 0.160679491568338 | 0.0798684337666354 | 0.901065977247888 | -0.00708915971585164 | 7.20601240465126e-12 | 0.376367801585529 |
| DLPFC | ADediting_992641 | chr22_39370864_+ | 0.0919618188763558 | 0.0958761639739435 | 0.525370383688247 | -0.0362050619268276 | 1.84827320728601e-11 | 0.369440684435837 |
| DLPFC | ADediting_992646 | chr22_39371281_+ | 0.971003848918865 | -0.00207287258145799 | 0.0963669244872194 | -0.0946068608611933 | 3.04931616254884e-08 | 0.308128419696791 |
| DLPFC | ADediting_992659 | chr22_39371669_+ | 0.962818606887742 | -0.00265839343274988 | 0.0817437581483314 | -0.0990195808293478 | 2.06412732319483e-10 | 0.350897989072955 |
| DLPFC | ADediting_992669 | chr22_39372658_+ | 0.589998129521554 | 0.030720864211314 | 0.510160628382094 | -0.0375437398752893 | 6.60642633519843e-11 | 0.359801642769097 |
| CER | ADediting_992674 | chr22_39379405_+ | 3.08580425037376e-09 | 0.460338503388939 | 6.40971559802804e-11 | 0.501291027319117 | 0.0666551168765871 | 0.150150834893819 |
| CER | ADediting_992675 | chr22_39379414_+ | 1.75724067487331e-06 | 0.378773171516977 | 1.72284966097461e-07 | 0.411191372087343 | 0.456972612985122 | 0.0611893067655113 |
| CER | ADediting_992676 | chr22_39379419_+ | 0.00018302902051625 | 0.300887597740203 | 0.000218034166937427 | 0.297495548339137 | 0.148294961724433 | 0.118606285451605 |
| CER | ADediting_992677 | chr22_39379457_+ | 0.000917323871307677 | 0.267922206464292 | 7.16054232856461e-06 | 0.357328542848053 | 0.0740032006441752 | 0.146312658848283 |
| CER | ADediting_992678 | chr22_39379472_+ | 4.41786363264792e-05 | 0.327014469503362 | 1.77018435523092e-06 | 0.378665037395029 | 0.0863877637451251 | 0.140490219817743 |
| CER | ADediting_992681 | chr22_39379487_+ | 0.000422812406497071 | 0.284265603788528 | 1.35547623383576e-06 | 0.382573371953415 | 0.0506198485158318 | 0.159908795365729 |
| CER | ADediting_992682 | chr22_39379513_+ | 5.05341863244961e-09 | 0.454714414128138 | 5.81471503410466e-09 | 0.453095621426252 | 0.0399307345001981 | 0.167957812441051 |
| CER | ADediting_992683 | chr22_39379514_+ | 2.1828753955633e-11 | 0.511776901857259 | 2.21095695955659e-14 | 0.571505881039566 | 0.000407382357949908 | 0.285025536527429 |
| CER | ADediting_992684 | chr22_39379523_+ | 6.71879389591099e-07 | 0.392614909865708 | 1.78869471582475e-07 | 0.410694228687133 | 0.692394137104483 | 0.0325651209511909 |
| CER | ADediting_992685 | chr22_39379540_+ | 1.12464514359297e-10 | 0.495673034561324 | 1.93290811523421e-13 | 0.553965417591072 | 0.0578078160192173 | 0.155259995940256 |
| CER | ADediting_992686 | chr22_39379546_+ | 0.000198483329416997 | 0.299321627537572 | 1.19536581185295e-07 | 0.415994753063017 | 0.130090656174762 | 0.124156616016183 |
| CER | ADediting_992687 | chr22_39379549_+ | 6.89350939070252e-08 | 0.423089782694594 | 1.23294947120241e-12 | 0.53811691673516 | 0.0624333917747505 | 0.152514690014525 |
| CER | ADediting_992688 | chr22_39379555_+ | 1.69774414459673e-11 | 0.514173114075028 | 5.98836501180453e-12 | 0.523913060210963 | 0.016109086036821 | 0.196212090760512 |
| CER | ADediting_992689 | chr22_39379566_+ | 0.000572738869814529 | 0.277980141800948 | 1.5595532286656e-07 | 0.412507407197925 | 0.151306097493482 | 0.117738838593246 |
| CER | ADediting_992693 | chr22_39380421_+ | 7.56884924076765e-08 | 0.421896583800969 | 0.000148118565319553 | 0.304934848642393 | 0.254213147691057 | 0.0936737135627841 |
| CER | ADediting_992694 | chr22_39380427_+ | 1.12198060183082e-06 | 0.385311239385913 | 0.000235974204773334 | 0.295949194711337 | 0.445266738398149 | 0.0627893455953938 |
| CER | ADediting_992695 | chr22_39380435_+ | 6.51646305876306e-11 | 0.501127435149136 | 8.63061592995535e-12 | 0.520531951258408 | 0.0460943572364796 | 0.163124659067652 |
| TCX | ADediting_992695 | chr22_39380435_+ | 0.0416611962242033 | 0.166541139617061 | 1.43708614506961e-05 | 0.346091796214366 | 0.197359951125877 | -0.105844877943533 |
| CER | ADediting_992697 | chr22_39380483_+ | 1.51526716173658e-05 | 0.345219468601891 | 0.00460065893770698 | 0.230184260363276 | 0.512101389094905 | 0.0539392359811034 |
| DLPFC | ADediting_992699 | chr22_39380493_+ | 1.1017812915969e-08 | 0.317400417383006 | 1.03099941660568e-06 | 0.273288858416389 | 0.00355825602247313 | 0.165083593112077 |
| CER | ADediting_992699 | chr22_39380493_+ | 3.36317832719209e-05 | 0.33176494130253 | 5.85881328263361e-06 | 0.360487228517349 | 0.0940003283150198 | 0.137235978248747 |
| CER | ADediting_992700 | chr22_39380494_+ | 6.6461988679502e-05 | 0.319751590657213 | 3.92289781868622e-05 | 0.329093547809791 | 0.00547915571036954 | 0.225729535682393 |
| CER | ADediting_992701 | chr22_39380502_+ | 8.24580039723361e-07 | 0.389718944342657 | 2.18261866335077e-07 | 0.40804243216441 | 0.103019162832342 | 0.133640889369108 |
| CER | ADediting_992702 | chr22_39380519_+ | 1.59396852321711e-08 | 0.441207526748218 | 1.05398840629421e-08 | 0.446139125294713 | 0.0468948614116463 | 0.162537234632616 |
| TCX | ADediting_992702 | chr22_39380519_+ | 0.00818404271448691 | 0.215177579966087 | 2.67902052771855e-05 | 0.335666927565131 | 0.936824042990602 | 0.00652626095790683 |
| DLPFC | ADediting_992703 | chr22_39380529_+ | 1.40011674939962e-09 | 0.335276359320444 | 5.92042489038172e-11 | 0.360644059523808 | 0.109377780670456 | 0.0911093172138519 |
| CER | ADediting_992703 | chr22_39380529_+ | 2.88120493799545e-07 | 0.404304134395501 | 4.83885794496663e-06 | 0.363467444121119 | 0.976503195932727 | -0.00242512218467462 |
| CER | ADediting_992707 | chr22_39380652_+ | 0.000131619270032786 | 0.307168086077706 | 2.01914567960658e-09 | 0.465094457579626 | 0.0435578675028379 | 0.165043952049679 |
| DLPFC | ADediting_992708 | chr22_39380669_+ | 5.2892936748082e-08 | 0.302975157209753 | 3.28658321777439e-07 | 0.285123883136324 | 0.00403259847687189 | 0.162889005040801 |
| CER | ADediting_992708 | chr22_39380669_+ | 0.0012969551694718 | 0.260274175008957 | 2.749761322192e-07 | 0.404935954894352 | 0.0330075997803462 | 0.174200341943162 |
| CER | ADediting_992709 | chr22_39380700_+ | 0.0306233362024704 | 0.176608545873506 | 0.000161802216312086 | 0.303252175591794 | 0.939622358143101 | 0.00623662624746758 |
| CER | ADediting_992710 | chr22_39380701_+ | 4.35704313486902e-05 | 0.32725779865048 | 4.08613765445569e-09 | 0.457149438733612 | 0.266799543869926 | 0.0912429427214661 |
| CER | ADediting_992711 | chr22_39380760_+ | 4.08384887191284e-05 | 0.328391693486332 | 1.72751541134743e-07 | 0.411155551193406 | 0.314175310304819 | 0.0827314550106734 |
| CER | ADediting_992713 | chr22_39380804_+ | 5.65555732414553e-05 | 0.322644192610716 | 8.94843293216318e-05 | 0.314342821308844 | 0.440222456408445 | 0.0634861279569304 |
| CER | ADediting_992714 | chr22_39380859_+ | 8.52967682773483e-06 | 0.354546270140581 | 2.17654128431048e-08 | 0.437441148165769 | 0.196690191090769 | 0.106002384922572 |
| CER | ADediting_992715 | chr22_39380868_+ | 2.39555150929191e-09 | 0.463186427260496 | 2.50348190568329e-10 | 0.487497053809453 | 0.00221566764779022 | 0.247982881022395 |
| CER | ADediting_992718 | chr22_39381050_+ | 6.50985791032674e-06 | 0.358832557517161 | 2.10543061684534e-07 | 0.408523831631151 | 0.0522761098334591 | 0.158791394502125 |
| CER | ADediting_992719 | chr22_39381053_+ | 0.000353578116111419 | 0.287901614905391 | 1.39998868888339e-05 | 0.346521509051238 | 0.0659055662258351 | 0.150561424657502 |
| CER | ADediting_992720 | chr22_39381062_+ | 3.70284078836695e-07 | 0.400886818255354 | 5.21828673943737e-07 | 0.39615126036405 | 0.149468697967348 | 0.118266587963239 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 2.23468212063685e-104 | 0.885194090588794 | 8.25096133609795e-109 | 0.892993048644862 | 0.0482692183600862 | 0.112270595655793 |
| AC | 1.82475733321513e-67 | 0.838912064268408 | 3.43737502317783e-76 | 0.864881231469106 | 0.000297855382712522 | 0.226915012026949 |
| PCC | 2.81826004631981e-76 | 0.914666603998969 | 1.62234949864697e-85 | 0.932483821389064 | 0.743843358889275 | 0.0237969644466053 |
| CER | 3.90167512693732e-23 | 0.697020397230309 | 1.69797055503655e-47 | 0.870837742144186 | 0.00112846006234452 | 0.263374513082589 |
| TCX | 9.98036614647198e-23 | 0.692326749395441 | 6.73728212271304e-56 | 0.902141238004998 | 9.3169439343541e-05 | -0.313600920285927 |
| FP | 6.37066244718353e-27 | 0.694177700372156 | 4.53053844969038e-28 | 0.705073088117848 | 0.00593214776220922 | 0.205476614130364 |
| IFG | 5.26717798968137e-07 | 0.819972688825636 | 1.80775002177437e-05 | 0.746728036539163 | 0.908522461994254 | 0.0242170067991536 |
| PG | 0.00191814288881033 | 0.226066796508657 | 3.44035448618711e-09 | 0.416255349607517 | 0.0533938944792883 | -0.141879788488932 |
| STG | 1.37639291774886e-24 | 0.850431586065729 | 1.96849305653492e-22 | 0.829339989165271 | 0.710091508895563 | -0.0411589420533902 |
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Relation with AD stages for SYNGR1 |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| CER | ADediting_992554 | chr22_39356136_+ | 0.000185699703942629 | 0.352166666359456 |
| CER | ADediting_992584 | chr22_39361497_+ | 0.000396810704402695 | 0.334849540085154 |
| CER | ADediting_992610 | chr22_39366374_+ | 0.000160381445905125 | 0.355397515707159 |
| CER | ADediting_992654 | chr22_39371571_+ | 3.93501087470885e-05 | 0.384743567614494 |
| CER | ADediting_992656 | chr22_39371620_+ | 0.000205199454209025 | 0.349945745368893 |
| CER | ADediting_992674 | chr22_39379405_+ | 1.75507953653138e-05 | 0.400421663116996 |
| CER | ADediting_992678 | chr22_39379472_+ | 0.00128832339606868 | 0.305810500770711 |
| CER | ADediting_992681 | chr22_39379487_+ | 0.000257226086194101 | 0.34485823935048 |
| CER | ADediting_992683 | chr22_39379514_+ | 1.6742878807265e-05 | 0.401312753383748 |
| CER | ADediting_992685 | chr22_39379540_+ | 0.000775653390575869 | 0.318677326094471 |
| CER | ADediting_992707 | chr22_39380652_+ | 5.25326028787769e-05 | 0.378934105742001 |
| CER | ADediting_992708 | chr22_39380669_+ | 6.99927512539869e-06 | 0.417360553429239 |
| CER | ADediting_992715 | chr22_39380868_+ | 0.00127220372723944 | 0.30613682250789 |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
| CER | 3.86574711549693e-06 | 0.427831075137026 |
| PG | 4.74935966196681e-09 | -0.412839105523881 |
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RelatedDrugs for SYNGR1 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SYNGR1 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
| SYNGR1 | C0036341 | Schizophrenia | 5 | PSYGENET |
| SYNGR1 | C0005586 | Bipolar Disorder | 2 | PSYGENET |
| SYNGR1 | C0023467 | Leukemia, Myelocytic, Acute | 1 | CTD_human |
| SYNGR1 | C0024141 | Lupus Erythematosus, Systemic | 1 | CTD_human |
| SYNGR1 | C0026998 | Acute Myeloid Leukemia, M1 | 1 | CTD_human |
| SYNGR1 | C0242380 | Libman-Sacks Disease | 1 | CTD_human |
| SYNGR1 | C1879321 | Acute Myeloid Leukemia (AML-M2) | 1 | CTD_human |
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