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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited versus non-edited samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with AD stages

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene


Gene summary for ZNF625

check button Gene summary
Gene informationGene symbol

ZNF625

Gene ID

90589

Gene namezinc finger protein 625
Synonyms-
Cytomap

19p13.2

Type of geneprotein-coding
Descriptionzinc finger protein 625
Modification date20200313
UniProtAcc

Q96I27,

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for ZNF625

check buttonRNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
all structure

check button RNA editing frequencies across three data sets.
boxplot

check buttonThe number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
boxplot

check button RNA A-to-I editing events in AD.
ADediting_709198(12143018, -), ADediting_709199(12143031, -), ADediting_709200(12143072, -), ADediting_709201(12143271, -), ADediting_709202(12143296, -), ADediting_709203(12143310, -), ADediting_709204(12143579, -), ADediting_709205(12143621, -), ADediting_709206(12143688, -), ADediting_709207(12143690, -), ADediting_709208(12143764, -), ADediting_709209(12143775, -), ADediting_709210(12143781, -), ADediting_709211(12143784, -), ADediting_709212(12143835, -), ADediting_709213(12143847, -), ADediting_709214(12143864, -), ADediting_709215(12143865, -), ADediting_709216(12143934, -), ADediting_709217(12144008, -), ADediting_709218(12144010, -), ADediting_709219(12144093, -), ADediting_709220(12144102, -), ADediting_709221(12144110, -), ADediting_709222(12144351, -), ADediting_709223(12144382, -), ADediting_709224(12144390, -), ADediting_709225(12144428, -), ADediting_709226(12144430, -), ADediting_709227(12144787, -), ADediting_709228(12144824, -), ADediting_709229(12144843, -), ADediting_709230(12144847, -), ADediting_709231(12144857, -), ADediting_709232(12144875, -), ADediting_709233(12144879, -), ADediting_709234(12144882, -), ADediting_709235(12144883, -), ADediting_709236(12144884, -), ADediting_709237(12144885, -), ADediting_709238(12144894, -), ADediting_709239(12144895, -), ADediting_709240(12144898, -), ADediting_709241(12144904, -), ADediting_709242(12144909, -), ADediting_709243(12144940, -), ADediting_709244(12144943, -), ADediting_709245(12144986, -), ADediting_709246(12144987, -), ADediting_709247(12144989, -), ADediting_709248(12148176, -), ADediting_709249(12148719, -), ADediting_709250(12148785, -), ADediting_709251(12148791, -), ADediting_709252(12148794, -), ADediting_709253(12148840, -), ADediting_709254(12148841, -), ADediting_709255(12148842, -), ADediting_709256(12149114, -), ADediting_709257(12149117, -), ADediting_709258(12149163, -), ADediting_709259(12149173, -), ADediting_709260(12149185, -), ADediting_709261(12149233, -), ADediting_709262(12149868, -), ADediting_709263(12151513, -), ADediting_709264(12151519, -), ADediting_709265(12151654, -), ADediting_709266(12151674, -), ADediting_709267(12151760, -), ADediting_709268(12152586, -), ADediting_709269(12152675, -), ADediting_709270(12152678, -), ADediting_709271(12152684, -), ADediting_709272(12152698, -), ADediting_709273(12152720, -), ADediting_709274(12152730, -), ADediting_709275(12152747, -), ADediting_709276(12152759, -), ADediting_709277(12152803, -), ADediting_709278(12153103, -), ADediting_709279(12153124, -), ADediting_709280(12153239, -), ADediting_709281(12153243, -), ADediting_709282(12153319, -), ADediting_709283(12153336, -), ADediting_709284(12153427, -), ADediting_709285(12153439, -), ADediting_709286(12153440, -), ADediting_709287(12153488, -), ADediting_709288(12153513, -), ADediting_709289(12153528, -), ADediting_709290(12153572, -), ADediting_709291(12153576, -), ADediting_709292(12153584, -), ADediting_709293(12153597, -), ADediting_709294(12153601, -), ADediting_709295(12153602, -), ADediting_709296(12153608, -), ADediting_709297(12153632, -), ADediting_709298(12153936, -), ADediting_709299(12153940, -), ADediting_709300(12153946, -), ADediting_709301(12153991, -), ADediting_709302(12154002, -), ADediting_709303(12154041, -), ADediting_709304(12154074, -), ADediting_709305(12154079, -), ADediting_709306(12154080, -), ADediting_709307(12154082, -), ADediting_709308(12154965, -), ADediting_709309(12155023, -), ADediting_709310(12155033, -), ADediting_709311(12155043, -), ADediting_709312(12155046, -), ADediting_709313(12155063, -), ADediting_709314(12155104, -), ADediting_709315(12155114, -), ADediting_709316(12155139, -), ADediting_709317(12155140, -), ADediting_709318(12155150, -), ADediting_709319(12155179, -), ADediting_709320(12155180, -), ADediting_709321(12156066, -), ADediting_1552250(12143506, -), ADediting_1552251(12144062, -), ADediting_1552252(12144073, -), ADediting_1552253(12144085, -), ADediting_1552254(12144099, -), ADediting_1552255(12144118, -), ADediting_1552256(12144236, -), ADediting_1552257(12144371, -), ADediting_1552258(12144786, -), ADediting_1552259(12144830, -), ADediting_1552260(12144929, -), ADediting_1552261(12144934, -), ADediting_1630798(12144754, -), ADediting_1630799(12144811, -), ADediting_1630800(12144816, -), ADediting_1630801(12144948, -),

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RNA editing positional annotations for ZNF625 using Annovar

check button Protein coding RNA editing(s).
ADeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
ADeditome IDPositionVariant type
ADediting_709198chr19_12143018_-ncRNA_exonic
ADediting_709199chr19_12143031_-ncRNA_exonic
ADediting_709200chr19_12143072_-ncRNA_exonic
ADediting_709201chr19_12143271_-ncRNA_exonic
ADediting_709202chr19_12143296_-ncRNA_exonic
ADediting_709203chr19_12143310_-ncRNA_exonic
ADediting_709204chr19_12143579_-intronic
ADediting_709205chr19_12143621_-intronic
ADediting_709206chr19_12143688_-intronic
ADediting_709207chr19_12143690_-intronic
ADediting_709208chr19_12143764_-intronic
ADediting_709209chr19_12143775_-intronic
ADediting_709210chr19_12143781_-intronic
ADediting_709211chr19_12143784_-intronic
ADediting_709212chr19_12143835_-intronic
ADediting_709213chr19_12143847_-intronic
ADediting_709214chr19_12143864_-intronic
ADediting_709215chr19_12143865_-intronic
ADediting_709216chr19_12143934_-intronic
ADediting_709217chr19_12144008_-intronic
ADediting_709218chr19_12144010_-intronic
ADediting_709219chr19_12144093_-intronic
ADediting_709220chr19_12144102_-intronic
ADediting_709221chr19_12144110_-intronic
ADediting_709222chr19_12144351_-intronic
ADediting_709223chr19_12144382_-intronic
ADediting_709224chr19_12144390_-intronic
ADediting_709225chr19_12144428_-intronic
ADediting_709226chr19_12144430_-intronic
ADediting_709227chr19_12144787_-intronic
ADediting_709228chr19_12144824_-intronic
ADediting_709229chr19_12144843_-intronic
ADediting_709230chr19_12144847_-intronic
ADediting_709231chr19_12144857_-intronic
ADediting_709232chr19_12144875_-intronic
ADediting_709233chr19_12144879_-intronic
ADediting_709234chr19_12144882_-intronic
ADediting_709235chr19_12144883_-intronic
ADediting_709236chr19_12144884_-intronic
ADediting_709237chr19_12144885_-intronic
ADediting_709238chr19_12144894_-UTR3
ADediting_709239chr19_12144895_-UTR3
ADediting_709240chr19_12144898_-UTR3
ADediting_709241chr19_12144904_-UTR3
ADediting_709242chr19_12144909_-UTR3
ADediting_709243chr19_12144940_-UTR3
ADediting_709244chr19_12144943_-UTR3
ADediting_709245chr19_12144986_-UTR3
ADediting_709246chr19_12144987_-UTR3
ADediting_709247chr19_12144989_-UTR3
ADediting_709248chr19_12148176_-intronic
ADediting_709249chr19_12148719_-intronic
ADediting_709250chr19_12148785_-intronic
ADediting_709251chr19_12148791_-intronic
ADediting_709252chr19_12148794_-intronic
ADediting_709253chr19_12148840_-intronic
ADediting_709254chr19_12148841_-intronic
ADediting_709255chr19_12148842_-intronic
ADediting_709256chr19_12149114_-intronic
ADediting_709257chr19_12149117_-intronic
ADediting_709258chr19_12149163_-intronic
ADediting_709259chr19_12149173_-intronic
ADediting_709260chr19_12149185_-intronic
ADediting_709261chr19_12149233_-intronic
ADediting_709262chr19_12149868_-intronic
ADediting_709263chr19_12151513_-intronic
ADediting_709264chr19_12151519_-intronic
ADediting_709265chr19_12151654_-intronic
ADediting_709266chr19_12151674_-intronic
ADediting_709267chr19_12151760_-intronic
ADediting_709268chr19_12152586_-intronic
ADediting_709269chr19_12152675_-intronic
ADediting_709270chr19_12152678_-intronic
ADediting_709271chr19_12152684_-intronic
ADediting_709272chr19_12152698_-intronic
ADediting_709273chr19_12152720_-intronic
ADediting_709274chr19_12152730_-intronic
ADediting_709275chr19_12152747_-intronic
ADediting_709276chr19_12152759_-intronic
ADediting_709277chr19_12152803_-intronic
ADediting_709278chr19_12153103_-intronic
ADediting_709279chr19_12153124_-intronic
ADediting_709280chr19_12153239_-intronic
ADediting_709281chr19_12153243_-intronic
ADediting_709282chr19_12153319_-intronic
ADediting_709283chr19_12153336_-intronic
ADediting_709284chr19_12153427_-intronic
ADediting_709285chr19_12153439_-intronic
ADediting_709286chr19_12153440_-intronic
ADediting_709287chr19_12153488_-intronic
ADediting_709288chr19_12153513_-intronic
ADediting_709289chr19_12153528_-intronic
ADediting_709290chr19_12153572_-intronic
ADediting_709291chr19_12153576_-intronic
ADediting_709292chr19_12153584_-intronic
ADediting_709293chr19_12153597_-intronic
ADediting_709294chr19_12153601_-intronic
ADediting_709295chr19_12153602_-intronic
ADediting_709296chr19_12153608_-intronic
ADediting_709297chr19_12153632_-intronic
ADediting_709298chr19_12153936_-intronic
ADediting_709299chr19_12153940_-intronic
ADediting_709300chr19_12153946_-intronic
ADediting_709301chr19_12153991_-intronic
ADediting_709302chr19_12154002_-intronic
ADediting_709303chr19_12154041_-intronic
ADediting_709304chr19_12154074_-intronic
ADediting_709305chr19_12154079_-intronic
ADediting_709306chr19_12154080_-intronic
ADediting_709307chr19_12154082_-intronic
ADediting_709308chr19_12154965_-intronic
ADediting_709309chr19_12155023_-intronic
ADediting_709310chr19_12155033_-intronic
ADediting_709311chr19_12155043_-intronic
ADediting_709312chr19_12155046_-intronic
ADediting_709313chr19_12155063_-intronic
ADediting_709314chr19_12155104_-intronic
ADediting_709315chr19_12155114_-intronic
ADediting_709316chr19_12155139_-intronic
ADediting_709317chr19_12155140_-intronic
ADediting_709318chr19_12155150_-intronic
ADediting_709319chr19_12155179_-intronic
ADediting_709320chr19_12155180_-intronic
ADediting_709321chr19_12156066_-intronic
ADediting_1552250chr19_12143506_-intronic
ADediting_1552251chr19_12144062_-intronic
ADediting_1552252chr19_12144073_-intronic
ADediting_1552253chr19_12144085_-intronic
ADediting_1552254chr19_12144099_-intronic
ADediting_1552255chr19_12144118_-intronic
ADediting_1552256chr19_12144236_-intronic
ADediting_1552257chr19_12144371_-intronic
ADediting_1552258chr19_12144786_-intronic
ADediting_1552259chr19_12144830_-intronic
ADediting_1552260chr19_12144929_-UTR3
ADediting_1552261chr19_12144934_-UTR3
ADediting_1630798chr19_12144754_-intronic
ADediting_1630799chr19_12144811_-intronic
ADediting_1630800chr19_12144816_-intronic
ADediting_1630801chr19_12144948_-UTR3

check button Repat-regional RNA editing(s).
ADeditome IDPositionRepeat familyRepeat sub familyRepeat name
ADediting_709198chr19_12143018_-SINEAluName=AluJo
ADediting_709199chr19_12143031_-SINEAluName=AluJo
ADediting_709200chr19_12143072_-SINEAluName=AluJo
ADediting_709201chr19_12143271_-SINEAluName=AluSc
ADediting_709202chr19_12143296_-SINEAluName=AluSc
ADediting_709203chr19_12143310_-SINEAluName=AluSc
ADediting_709204chr19_12143579_-SINEAluName=AluSz
ADediting_709205chr19_12143621_-SINEAluName=AluSz
ADediting_709206chr19_12143688_-SINEAluName=AluSx
ADediting_709207chr19_12143690_-SINEAluName=AluSx
ADediting_709208chr19_12143764_-SINEAluName=AluSx
ADediting_709209chr19_12143775_-SINEAluName=AluSx
ADediting_709210chr19_12143781_-SINEAluName=AluSx
ADediting_709211chr19_12143784_-SINEAluName=AluSx
ADediting_709212chr19_12143835_-SINEAluName=AluSx
ADediting_709213chr19_12143847_-SINEAluName=AluSx
ADediting_709214chr19_12143864_-SINEAluName=AluSx
ADediting_709215chr19_12143865_-SINEAluName=AluSx
ADediting_709216chr19_12143934_-SINEAluName=AluSx
ADediting_709217chr19_12144008_-SINEAluName=AluSx1
ADediting_709218chr19_12144010_-SINEAluName=AluSx1
ADediting_709219chr19_12144093_-SINEAluName=AluSx1
ADediting_709220chr19_12144102_-SINEAluName=AluSx1
ADediting_709221chr19_12144110_-SINEAluName=AluSx1
ADediting_709222chr19_12144351_-SINEAluName=AluSz
ADediting_709223chr19_12144382_-SINEAluName=AluSz
ADediting_709224chr19_12144390_-SINEAluName=AluSz
ADediting_709225chr19_12144428_-SINEAluName=AluSz
ADediting_709226chr19_12144430_-SINEAluName=AluSz
ADediting_709227chr19_12144787_-SINEAluName=AluSx4
ADediting_709228chr19_12144824_-SINEAluName=AluSx4
ADediting_709229chr19_12144843_-SINEAluName=AluSx4
ADediting_709230chr19_12144847_-SINEAluName=AluSx4
ADediting_709231chr19_12144857_-SINEAluName=AluSx4
ADediting_709232chr19_12144875_-SINEAluName=AluSx4
ADediting_709233chr19_12144879_-SINEAluName=AluSx4
ADediting_709234chr19_12144882_-SINEAluName=AluSx4
ADediting_709235chr19_12144883_-SINEAluName=AluSx4
ADediting_709236chr19_12144884_-SINEAluName=AluSx4
ADediting_709237chr19_12144885_-SINEAluName=AluSx4
ADediting_709238chr19_12144894_-SINEAluName=AluSx4
ADediting_709239chr19_12144895_-SINEAluName=AluSx4
ADediting_709240chr19_12144898_-SINEAluName=AluSx4
ADediting_709241chr19_12144904_-SINEAluName=AluSx4
ADediting_709242chr19_12144909_-SINEAluName=AluSx4
ADediting_709243chr19_12144940_-SINEAluName=AluSx4
ADediting_709244chr19_12144943_-SINEAluName=AluSx4
ADediting_709245chr19_12144986_-SINEAluName=AluSx4
ADediting_709246chr19_12144987_-SINEAluName=AluSx4
ADediting_709247chr19_12144989_-SINEAluName=AluSx4
ADediting_709248chr19_12148176_-SINEAluName=AluSx1
ADediting_709249chr19_12148719_-SINEAluName=AluSg7
ADediting_709250chr19_12148785_-SINEAluName=AluSg7
ADediting_709251chr19_12148791_-SINEAluName=AluSg7
ADediting_709252chr19_12148794_-SINEAluName=AluSg7
ADediting_709253chr19_12148840_-SINEAluName=AluSg7
ADediting_709254chr19_12148841_-SINEAluName=AluSg7
ADediting_709255chr19_12148842_-SINEAluName=AluSg7
ADediting_709256chr19_12149114_-SINEAluName=AluSc5
ADediting_709257chr19_12149117_-SINEAluName=AluSc5
ADediting_709258chr19_12149163_-SINEAluName=AluSc5
ADediting_709259chr19_12149173_-SINEAluName=AluSc5
ADediting_709260chr19_12149185_-SINEAluName=AluSc5
ADediting_709261chr19_12149233_-SINEAluName=AluSc5
ADediting_709262chr19_12149868_-SINEAluName=AluSp
ADediting_709263chr19_12151513_-SINEAluName=AluY
ADediting_709264chr19_12151519_-SINEAluName=AluY
ADediting_709265chr19_12151654_-SINEAluName=AluY
ADediting_709266chr19_12151674_-SINEAluName=AluY
ADediting_709267chr19_12151760_-SINEAluName=AluJo
ADediting_709268chr19_12152586_-SINEAluName=AluSx3
ADediting_709269chr19_12152675_-SINEAluName=AluSx3
ADediting_709270chr19_12152678_-SINEAluName=AluSx3
ADediting_709271chr19_12152684_-SINEAluName=AluSx3
ADediting_709272chr19_12152698_-SINEAluName=AluSx3
ADediting_709273chr19_12152720_-SINEAluName=AluSx3
ADediting_709274chr19_12152730_-SINEAluName=AluSx3
ADediting_709275chr19_12152747_-SINEAluName=AluSx3
ADediting_709276chr19_12152759_-SINEAluName=AluSx3
ADediting_709277chr19_12152803_-SINEAluName=AluSx3
ADediting_709278chr19_12153103_-SINEAluName=AluSg4
ADediting_709279chr19_12153124_-SINEAluName=AluSg4
ADediting_709280chr19_12153239_-SINEAluName=AluSg4
ADediting_709281chr19_12153243_-SINEAluName=AluSg4
ADediting_709282chr19_12153319_-SINEAluName=AluSg4
ADediting_709283chr19_12153336_-SINEAluName=AluSg4
ADediting_709284chr19_12153427_-SINEAluName=AluSx
ADediting_709285chr19_12153439_-SINEAluName=AluSx
ADediting_709286chr19_12153440_-SINEAluName=AluSx
ADediting_709287chr19_12153488_-SINEAluName=AluSx
ADediting_709288chr19_12153513_-SINEAluName=AluSx
ADediting_709289chr19_12153528_-SINEAluName=AluSx
ADediting_709290chr19_12153572_-SINEAluName=AluSx
ADediting_709291chr19_12153576_-SINEAluName=AluSx
ADediting_709292chr19_12153584_-SINEAluName=AluSx
ADediting_709293chr19_12153597_-SINEAluName=AluSx
ADediting_709294chr19_12153601_-SINEAluName=AluSx
ADediting_709295chr19_12153602_-SINEAluName=AluSx
ADediting_709296chr19_12153608_-SINEAluName=AluSx
ADediting_709297chr19_12153632_-SINEAluName=AluSx
ADediting_709298chr19_12153936_-SINEAluName=AluY
ADediting_709299chr19_12153940_-SINEAluName=AluY
ADediting_709300chr19_12153946_-SINEAluName=AluY
ADediting_709301chr19_12153991_-SINEAluName=AluY
ADediting_709302chr19_12154002_-SINEAluName=AluY
ADediting_709303chr19_12154041_-SINEAluName=AluY
ADediting_709304chr19_12154074_-SINEAluName=AluY
ADediting_709305chr19_12154079_-SINEAluName=AluY
ADediting_709306chr19_12154080_-SINEAluName=AluY
ADediting_709307chr19_12154082_-SINEAluName=AluY
ADediting_709308chr19_12154965_-SINEAluName=AluSz
ADediting_709309chr19_12155023_-SINEAluName=AluSz
ADediting_709310chr19_12155033_-SINEAluName=AluSz
ADediting_709311chr19_12155043_-SINEAluName=AluSz
ADediting_709312chr19_12155046_-SINEAluName=AluSz
ADediting_709313chr19_12155063_-SINEAluName=AluSz
ADediting_709314chr19_12155104_-SINEAluName=AluSz
ADediting_709315chr19_12155114_-SINEAluName=AluSz
ADediting_709316chr19_12155139_-SINEAluName=AluSz
ADediting_709317chr19_12155140_-SINEAluName=AluSz
ADediting_709318chr19_12155150_-SINEAluName=AluSz
ADediting_709319chr19_12155179_-SINEAluName=AluSz
ADediting_709320chr19_12155180_-SINEAluName=AluSz
ADediting_709321chr19_12156066_-SINEAluName=AluJo
ADediting_1552250chr19_12143506_-SINEAluName=AluSc
ADediting_1552251chr19_12144062_-SINEAluName=AluSx1
ADediting_1552252chr19_12144073_-SINEAluName=AluSx1
ADediting_1552253chr19_12144085_-SINEAluName=AluSx1
ADediting_1552254chr19_12144099_-SINEAluName=AluSx1
ADediting_1552255chr19_12144118_-SINEAluName=AluSx1
ADediting_1552256chr19_12144236_-SINEAluName=AluSx1
ADediting_1552257chr19_12144371_-SINEAluName=AluSz
ADediting_1552258chr19_12144786_-SINEAluName=AluSx4
ADediting_1552259chr19_12144830_-SINEAluName=AluSx4
ADediting_1552260chr19_12144929_-SINEAluName=AluSx4
ADediting_1552261chr19_12144934_-SINEAluName=AluSx4
ADediting_1630798chr19_12144754_-SINEAluName=AluSx4
ADediting_1630799chr19_12144811_-SINEAluName=AluSx4
ADediting_1630800chr19_12144816_-SINEAluName=AluSx4
ADediting_1630801chr19_12144948_-SINEAluName=AluSx4

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RNA A-to-I editing events in the alternative splicing sites for ZNF625

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeADeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for ZNF625

check button Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

check button Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.
boxplot
boxplot
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
Soverview
Soverview

check button - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
ADeditome IDChrPositoingSkipped exonENSGENSTs

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Protein coding region RNA A-to-I editings for ZNF625

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for ZNF625

check buttonRNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
all structure

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1552261chr19_12144934_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-4281chr1912144929121449368mer-1a1214492912144946142-20.27
ADediting_1552261chr19_12144934_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-6716-3pchr1912144934121449407mer-m81214493312144955145-21.15
ADediting_1552261chr19_12144934_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-4281chr1912144929121449368mer-1a1214492912144946142-20.27
ADediting_1552261chr19_12144934_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-6716-3pchr1912144934121449407mer-m81214493312144955145-21.15
ADediting_709238chr19_12144894_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-325chr1912144893121449008mer-1a1214489312144915145-11.15
ADediting_709238chr19_12144894_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-325chr1912144893121449008mer-1a1214489312144915145-11.15
ADediting_709239chr19_12144895_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-222-5pchr1912144893121449008mer-1a1214489312144913141-9.81
ADediting_709239chr19_12144895_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-30a-3pchr1912144891121448988mer-1a1214489112144915154-11.94
ADediting_709239chr19_12144895_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-30d-3pchr1912144891121448988mer-1a1214489112144913153-12.1
ADediting_709239chr19_12144895_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-30e-3pchr1912144891121448988mer-1a1214489112144915154-14
ADediting_709239chr19_12144895_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-936chr1912144894121449018mer-1a1214489412144916159-22.75
ADediting_709239chr19_12144895_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-222-5pchr1912144893121449008mer-1a1214489312144913141-9.81
ADediting_709239chr19_12144895_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-30a-3pchr1912144891121448988mer-1a1214489112144915154-11.94
ADediting_709239chr19_12144895_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-30d-3pchr1912144891121448988mer-1a1214489112144913153-12.1
ADediting_709239chr19_12144895_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-30e-3pchr1912144891121448988mer-1a1214489112144915154-14
ADediting_709239chr19_12144895_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-936chr1912144894121449018mer-1a1214489412144916159-22.75
ADediting_709240chr19_12144898_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-374b-3pchr1912144893121449008mer-1a1214489312144915151-12.2
ADediting_709240chr19_12144898_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-4756-3pchr1912144898121449047mer-m81214489712144916151-16.82
ADediting_709240chr19_12144898_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-374b-3pchr1912144893121449008mer-1a1214489312144915151-12.2
ADediting_709240chr19_12144898_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-4756-3pchr1912144898121449047mer-m81214489712144916151-16.82
ADediting_709241chr19_12144904_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-483-5pchr1912144901121449077mer-m81214490012144921140-14.01
ADediting_709241chr19_12144904_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-483-5pchr1912144901121449077mer-m81214490012144921140-14.01
ADediting_709242chr19_12144909_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-412-3pchr1912144909121449157mer-m81214490812144930157-16.62
ADediting_709242chr19_12144909_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-6754-3pchr1912144909121449157mer-m81214490812144932141-14.96
ADediting_709242chr19_12144909_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-412-3pchr1912144909121449157mer-m81214490812144930157-16.62
ADediting_709242chr19_12144909_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-6754-3pchr1912144909121449157mer-m81214490812144932141-14.96
ADediting_709243chr19_12144940_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-181a-2-3pchr1912144939121449457mer-m81214493812144961158-24.3
ADediting_709243chr19_12144940_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-181a-2-3pchr1912144939121449457mer-m81214493812144961158-24.3
ADediting_709245chr19_12144986_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-625-3pchr1912144985121449917mer-m81214498412145005144-12.62
ADediting_709245chr19_12144986_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-8052chr1912144981121449877mer-1a1214498112144999152-29.37
ADediting_709245chr19_12144986_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-625-3pchr1912144985121449917mer-m81214498412145005144-12.62
ADediting_709245chr19_12144986_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-8052chr1912144981121449877mer-1a1214498112144999152-29.37
ADediting_709246chr19_12144987_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-638chr1912144981121449877mer-1a1214498112145007146-26.6
ADediting_709246chr19_12144987_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-638chr1912144981121449877mer-1a1214498112145007146-26.6
ADediting_709247chr19_12144989_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-10399-5pchr1912144985121449917mer-m81214498412145005144-10.52
ADediting_709247chr19_12144989_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-6504-3pchr1912144985121449917mer-m81214498412145005160-16.69
ADediting_709247chr19_12144989_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-7151-3pchr1912144986121449938mer-1a1214498612145002146-17.62
ADediting_709247chr19_12144989_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-10399-5pchr1912144985121449917mer-m81214498412145005144-10.52
ADediting_709247chr19_12144989_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-6504-3pchr1912144985121449917mer-m81214498412145005160-16.69
ADediting_709247chr19_12144989_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-7151-3pchr1912144986121449938mer-1a1214498612145002146-17.62

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1552260chr19_12144929_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-3663-5pchr1912144928121449347mer-m81214492712144946152-22.6
ADediting_1552260chr19_12144929_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-6131chr1912144927121449337mer-m81214492612144944140-18.33
ADediting_1552260chr19_12144929_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-6843-3pchr1912144929121449357mer-m81214492812144947144-15.77
ADediting_1552260chr19_12144929_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-6848-3pchr1912144929121449357mer-m81214492812144946140-13.18
ADediting_1552260chr19_12144929_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-3663-5pchr1912144928121449347mer-m81214492712144946152-22.6
ADediting_1552260chr19_12144929_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-6131chr1912144927121449337mer-m81214492612144944140-18.33
ADediting_1552260chr19_12144929_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-6843-3pchr1912144929121449357mer-m81214492812144947144-15.77
ADediting_1552260chr19_12144929_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-6848-3pchr1912144929121449357mer-m81214492812144946140-13.18
ADediting_1552261chr19_12144934_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-6843-3pchr1912144929121449357mer-m81214492812144947144-15.77
ADediting_1552261chr19_12144934_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-6848-3pchr1912144929121449357mer-m81214492812144946140-13.18
ADediting_1552261chr19_12144934_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-6843-3pchr1912144929121449357mer-m81214492812144947144-15.77
ADediting_1552261chr19_12144934_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-6848-3pchr1912144929121449357mer-m81214492812144946140-13.18
ADediting_1630801chr19_12144948_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-6790-3pchr1912144943121449508mer-1a1214494312144964152-21.64
ADediting_1630801chr19_12144948_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-6790-3pchr1912144943121449508mer-1a1214494312144964152-21.64
ADediting_709240chr19_12144898_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-6832-5pchr1912144897121449037mer-m81214489612144918142-15.43
ADediting_709240chr19_12144898_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-6832-5pchr1912144897121449037mer-m81214489612144918142-15.43
ADediting_709241chr19_12144904_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-3170chr1912144904121449107mer-m81214490312144926142-14.18
ADediting_709241chr19_12144904_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-6855-5pchr1912144904121449107mer-m81214490312144928147-16.47
ADediting_709241chr19_12144904_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-6890-5pchr1912144903121449097mer-m81214490212144922140-13.41
ADediting_709241chr19_12144904_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-3170chr1912144904121449107mer-m81214490312144926142-14.18
ADediting_709241chr19_12144904_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-6855-5pchr1912144904121449107mer-m81214490312144928147-16.47
ADediting_709241chr19_12144904_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-6890-5pchr1912144903121449097mer-m81214490212144922140-13.41
ADediting_709242chr19_12144909_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-193b-5pchr1912144904121449118mer-1a1214490412144925142-12.15
ADediting_709242chr19_12144909_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-3170chr1912144904121449107mer-m81214490312144926142-14.18
ADediting_709242chr19_12144909_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-6855-5pchr1912144904121449107mer-m81214490312144928147-16.47
ADediting_709242chr19_12144909_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-193b-5pchr1912144904121449118mer-1a1214490412144925142-12.15
ADediting_709242chr19_12144909_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-3170chr1912144904121449107mer-m81214490312144926142-14.18
ADediting_709242chr19_12144909_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-6855-5pchr1912144904121449107mer-m81214490312144928147-16.47
ADediting_709243chr19_12144940_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-606chr1912144937121449437mer-m81214493612144956150-13.26
ADediting_709243chr19_12144940_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-606chr1912144937121449437mer-m81214493612144956150-13.26
ADediting_709245chr19_12144986_-ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-5089-5pchr1912144981121449877mer-m81214498012145002144-13.6
ADediting_709245chr19_12144986_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-5089-5pchr1912144981121449877mer-m81214498012145002144-13.6

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_107020chr1_37500952_-ENSG00000257591.6ENST00000414892.5ZNF625-201hsa-miR-5581-3pchr1912142415121424228mer-1a1214241512142436157-23.08
ADediting_843620chr2_207754818_+ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-4775chr1912146113121461197mer-m81214611212146131142-12.6

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_107020chr1_37500952_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-5581-3pchr1912146173121461797mer-m81214617212146193140-12.74
ADediting_291761chr11_93733708_-ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-1304-3pchr1912145663121456697mer-m81214566212145683146-16.53
ADediting_843620chr2_207754818_+ENSG00000257591.6ENST00000439556.3ZNF625-202hsa-miR-4775chr1912145213121452197mer-m81214521212145231147-7.4
ADediting_843620chr2_207754818_+ENSG00000257591.6ENST00000455799.1ZNF625-203hsa-miR-4775chr1912145213121452197mer-m81214521212145231147-7.4

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for ZNF625

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000455799.1protein_codingSoverviewSoverview
ENST00000439556.3protein_codingSoverviewSoverview

check button RNA A-to-I editing in miRNA.
ADeditom_IDENSTmir_IDEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in mRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
ADediting_709238ENST00000455799.1chr19_12144894_-1674-489.80-488.90-503.40
ADediting_709239ENST00000455799.1chr19_12144895_-1673-488.90-488.90-503.40
ADediting_709240ENST00000455799.1chr19_12144898_-1670-488.90-488.90-503.40
ADediting_709241ENST00000455799.1chr19_12144904_-1664-488.60-488.90-503.40
ADediting_709242ENST00000455799.1chr19_12144909_-1659-489.20-488.90-503.40
ADediting_1552260ENST00000455799.1chr19_12144929_-1639-488.70-488.90-503.40
ADediting_1552261ENST00000455799.1chr19_12144934_-1634-490.20-488.90-503.40
ADediting_709243ENST00000455799.1chr19_12144940_-1628-493.30-488.90-503.40
ADediting_709244ENST00000455799.1chr19_12144943_-1625-489.30-488.90-503.40
ADediting_1630801ENST00000455799.1chr19_12144948_-1620-489.20-488.90-503.40
ADediting_709245ENST00000455799.1chr19_12144986_-1582-488.90-488.90-503.40
ADediting_709246ENST00000455799.1chr19_12144987_-1581-491.60-488.90-503.40
ADediting_709247ENST00000455799.1chr19_12144989_-1579-490.20-488.90-503.40
ADediting_709238ENST00000439556.3chr19_12144894_-1698-500.50-499.80-516.60
ADediting_709239ENST00000439556.3chr19_12144895_-1697-500.00-499.80-516.60
ADediting_709240ENST00000439556.3chr19_12144898_-1694-499.80-499.80-516.60
ADediting_709241ENST00000439556.3chr19_12144904_-1688-499.10-499.80-516.60
ADediting_709242ENST00000439556.3chr19_12144909_-1683-503.70-499.80-516.60
ADediting_1552260ENST00000439556.3chr19_12144929_-1663-499.10-499.80-516.60
ADediting_1552261ENST00000439556.3chr19_12144934_-1658-500.90-499.80-516.60
ADediting_709243ENST00000439556.3chr19_12144940_-1652-503.80-499.80-516.60
ADediting_709244ENST00000439556.3chr19_12144943_-1649-501.70-499.80-516.60
ADediting_1630801ENST00000439556.3chr19_12144948_-1644-500.10-499.80-516.60
ADediting_709245ENST00000439556.3chr19_12144986_-1606-499.80-499.80-516.60
ADediting_709246ENST00000439556.3chr19_12144987_-1605-501.50-499.80-516.60
ADediting_709247ENST00000439556.3chr19_12144989_-1603-500.70-499.80-516.60

check button RNA A-to-I editing in lncRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for ZNF625

check button Correlation between ADAR gene expression and RNA editing frequency
TissueADeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

check button Correlation between ADAR gene expression and this gene's expression
TissueADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
DLPFC9.12001483158199e-080.2977775277905697.53496013868073e-110.3587878643536891.02308659302731e-050.247683187290609
AC1.03039005327602e-060.3032158799711012.46362812071911e-050.2633713311733031.24695298661358e-050.272453149777898
PCC2.96899882317353e-070.3606701092596943.63177406147087e-060.3279549881000980.008555720948372890.189764325501459
FP2.19746327838592e-170.5799450645888783.85431922825569e-180.5909319060707290.3362624225240490.0724890352320551
IFG0.02321986331100860.4522513270169030.1704047519824970.2830261848757630.543306817765790.127597982556719
PG1.99993872015453e-440.8095224016684012.02366382982834e-310.7233937853513070.234255371563578-0.0876389415207082
STG3.00261405486066e-120.6705561081732164.29309246985542e-110.6429044564979580.96536435737768-0.00480988006554831

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Relation with AD stages for ZNF625

check button Correlation between AD stages and RNA editing frequency
TissueADeditomIDpositionP-valCoeff.

check button Correlation between AD stages and this gene's expression
TissueP-valCoeff.

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RelatedDrugs for ZNF625

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for ZNF625

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource