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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for ZSWIM1 |
 Gene summary |
| Gene information | Gene symbol | ZSWIM1 | Gene ID | 90204 |
| Gene name | zinc finger SWIM-type containing 1 | |
| Synonyms | C20orf162 | |
| Cytomap | 20q13.12 | |
| Type of gene | protein-coding | |
| Description | zinc finger SWIM domain-containing protein 1zinc finger, SWIM domain containing 1 | |
| Modification date | 20200313 | |
| UniProtAcc | Q9BR11, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for ZSWIM1 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_938352(45884385, +), ADediting_938353(45884388, +), ADediting_938354(45884427, +), ADediting_938355(45884437, +), ADediting_938356(45884443, +), ADediting_938357(45884449, +), ADediting_938358(45884464, +), ADediting_938359(45884480, +), ADediting_938360(45884492, +), ADediting_938361(45884502, +), ADediting_938362(45884528, +), ADediting_938363(45884529, +), ADediting_938364(45884544, +), ADediting_938365(45884547, +), ADediting_938366(45884569, +), ADediting_938367(45884622, +), ADediting_938368(45884623, +), ADediting_938369(45884624, +), ADediting_938370(45884636, +), ADediting_938371(45884747, +), ADediting_938372(45884755, +), ADediting_938373(45884756, +), ADediting_938374(45884761, +), ADediting_938375(45884801, +), ADediting_938376(45884809, +), ADediting_938377(45884810, +), ADediting_938378(45884815, +), ADediting_938379(45884824, +), ADediting_938380(45884825, +), ADediting_938381(45884829, +), ADediting_938382(45884833, +), ADediting_938383(45884835, +), ADediting_938384(45884849, +), ADediting_938385(45884850, +), ADediting_938386(45884851, +), ADediting_938387(45884852, +), ADediting_938388(45884855, +), ADediting_938389(45884861, +), ADediting_938390(45884864, +), ADediting_938391(45884891, +), ADediting_938392(45884892, +), ADediting_938393(45884897, +), ADediting_938394(45884901, +), ADediting_938395(45884918, +), ADediting_938396(45884924, +), ADediting_938397(45884933, +), ADediting_938398(45884944, +), ADediting_938399(45884956, +), ADediting_938400(45884961, +), ADediting_938401(45884962, +), ADediting_938402(45884999, +), |
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RNA editing positional annotations for ZSWIM1 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_938352 | chr20_45884385_+ | UTR3 |
| ADediting_938353 | chr20_45884388_+ | UTR3 |
| ADediting_938354 | chr20_45884427_+ | UTR3 |
| ADediting_938355 | chr20_45884437_+ | UTR3 |
| ADediting_938356 | chr20_45884443_+ | UTR3 |
| ADediting_938357 | chr20_45884449_+ | UTR3 |
| ADediting_938358 | chr20_45884464_+ | UTR3 |
| ADediting_938359 | chr20_45884480_+ | UTR3 |
| ADediting_938360 | chr20_45884492_+ | UTR3 |
| ADediting_938361 | chr20_45884502_+ | UTR3 |
| ADediting_938362 | chr20_45884528_+ | UTR3 |
| ADediting_938363 | chr20_45884529_+ | UTR3 |
| ADediting_938364 | chr20_45884544_+ | UTR3 |
| ADediting_938365 | chr20_45884547_+ | UTR3 |
| ADediting_938366 | chr20_45884569_+ | UTR3 |
| ADediting_938367 | chr20_45884622_+ | UTR3 |
| ADediting_938368 | chr20_45884623_+ | UTR3 |
| ADediting_938369 | chr20_45884624_+ | UTR3 |
| ADediting_938370 | chr20_45884636_+ | UTR3 |
| ADediting_938371 | chr20_45884747_+ | UTR3 |
| ADediting_938372 | chr20_45884755_+ | UTR3 |
| ADediting_938373 | chr20_45884756_+ | UTR3 |
| ADediting_938374 | chr20_45884761_+ | UTR3 |
| ADediting_938375 | chr20_45884801_+ | UTR3 |
| ADediting_938376 | chr20_45884809_+ | UTR3 |
| ADediting_938377 | chr20_45884810_+ | UTR3 |
| ADediting_938378 | chr20_45884815_+ | UTR3 |
| ADediting_938379 | chr20_45884824_+ | UTR3 |
| ADediting_938380 | chr20_45884825_+ | UTR3 |
| ADediting_938381 | chr20_45884829_+ | UTR3 |
| ADediting_938382 | chr20_45884833_+ | UTR3 |
| ADediting_938383 | chr20_45884835_+ | UTR3 |
| ADediting_938384 | chr20_45884849_+ | UTR3 |
| ADediting_938385 | chr20_45884850_+ | UTR3 |
| ADediting_938386 | chr20_45884851_+ | UTR3 |
| ADediting_938387 | chr20_45884852_+ | UTR3 |
| ADediting_938388 | chr20_45884855_+ | UTR3 |
| ADediting_938389 | chr20_45884861_+ | UTR3 |
| ADediting_938390 | chr20_45884864_+ | UTR3 |
| ADediting_938391 | chr20_45884891_+ | UTR3 |
| ADediting_938392 | chr20_45884892_+ | UTR3 |
| ADediting_938393 | chr20_45884897_+ | UTR3 |
| ADediting_938394 | chr20_45884901_+ | UTR3 |
| ADediting_938395 | chr20_45884918_+ | UTR3 |
| ADediting_938396 | chr20_45884924_+ | UTR3 |
| ADediting_938397 | chr20_45884933_+ | UTR3 |
| ADediting_938398 | chr20_45884944_+ | UTR3 |
| ADediting_938399 | chr20_45884956_+ | UTR3 |
| ADediting_938400 | chr20_45884961_+ | UTR3 |
| ADediting_938401 | chr20_45884962_+ | UTR3 |
| ADediting_938402 | chr20_45884999_+ | UTR3 |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_938352 | chr20_45884385_+ | SINE | Alu | Name=AluY |
| ADediting_938353 | chr20_45884388_+ | SINE | Alu | Name=AluY |
| ADediting_938354 | chr20_45884427_+ | SINE | Alu | Name=AluY |
| ADediting_938355 | chr20_45884437_+ | SINE | Alu | Name=AluY |
| ADediting_938356 | chr20_45884443_+ | SINE | Alu | Name=AluY |
| ADediting_938357 | chr20_45884449_+ | SINE | Alu | Name=AluY |
| ADediting_938358 | chr20_45884464_+ | SINE | Alu | Name=AluY |
| ADediting_938359 | chr20_45884480_+ | SINE | Alu | Name=AluY |
| ADediting_938360 | chr20_45884492_+ | SINE | Alu | Name=AluY |
| ADediting_938361 | chr20_45884502_+ | SINE | Alu | Name=AluY |
| ADediting_938362 | chr20_45884528_+ | SINE | Alu | Name=AluY |
| ADediting_938363 | chr20_45884529_+ | SINE | Alu | Name=AluY |
| ADediting_938364 | chr20_45884544_+ | SINE | Alu | Name=AluY |
| ADediting_938365 | chr20_45884547_+ | SINE | Alu | Name=AluY |
| ADediting_938366 | chr20_45884569_+ | SINE | Alu | Name=AluY |
| ADediting_938367 | chr20_45884622_+ | SINE | Alu | Name=AluY |
| ADediting_938368 | chr20_45884623_+ | SINE | Alu | Name=AluY |
| ADediting_938369 | chr20_45884624_+ | SINE | Alu | Name=AluY |
| ADediting_938370 | chr20_45884636_+ | SINE | Alu | Name=AluY |
| ADediting_938371 | chr20_45884747_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938372 | chr20_45884755_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938373 | chr20_45884756_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938374 | chr20_45884761_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938375 | chr20_45884801_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938376 | chr20_45884809_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938377 | chr20_45884810_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938378 | chr20_45884815_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938379 | chr20_45884824_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938380 | chr20_45884825_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938381 | chr20_45884829_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938382 | chr20_45884833_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938383 | chr20_45884835_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938384 | chr20_45884849_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938385 | chr20_45884850_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938386 | chr20_45884851_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938387 | chr20_45884852_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938388 | chr20_45884855_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938389 | chr20_45884861_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938390 | chr20_45884864_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938391 | chr20_45884891_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938392 | chr20_45884892_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938393 | chr20_45884897_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938394 | chr20_45884901_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938395 | chr20_45884918_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938396 | chr20_45884924_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938397 | chr20_45884933_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938398 | chr20_45884944_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938399 | chr20_45884956_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938400 | chr20_45884961_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938401 | chr20_45884962_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938402 | chr20_45884999_+ | SINE | Alu | Name=AluSx1 |
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RNA A-to-I editing events in the alternative splicing sites for ZSWIM1 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for ZSWIM1 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |