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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for SNX21 |
 Gene summary |
| Gene information | Gene symbol | SNX21 | Gene ID | 90203 |
| Gene name | sorting nexin family member 21 | |
| Synonyms | C20orf161|PP3993|SNX-L|dJ337O18.4 | |
| Cytomap | 20q13.12 | |
| Type of gene | protein-coding | |
| Description | sorting nexin-21sorting nexin L | |
| Modification date | 20200320 | |
| UniProtAcc | Q969T3, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
Top |
RNA A-to-I events for SNX21 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA editing frequencies across three data sets. |
 |
| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA A-to-I editing events in AD. |
| ADediting_938019(45836243, +), ADediting_938020(45836376, +), ADediting_938021(45836380, +), ADediting_938022(45836397, +), ADediting_938023(45836403, +), ADediting_938024(45836412, +), ADediting_938025(45836432, +), ADediting_938026(45836470, +), ADediting_938027(45836471, +), ADediting_938028(45836473, +), ADediting_938029(45836527, +), ADediting_938030(45836543, +), ADediting_938031(45836574, +), ADediting_938032(45836581, +), ADediting_938033(45836584, +), ADediting_938034(45836600, +), ADediting_938035(45836601, +), ADediting_938036(45836613, +), ADediting_938037(45836618, +), ADediting_938038(45836634, +), ADediting_938040(45837792, +), ADediting_938041(45837837, +), ADediting_938042(45837842, +), ADediting_938043(45837847, +), ADediting_938044(45837853, +), ADediting_938045(45837859, +), ADediting_938046(45837866, +), ADediting_938047(45837872, +), ADediting_938048(45837873, +), ADediting_938049(45837902, +), ADediting_938050(45837906, +), ADediting_938051(45837912, +), ADediting_938052(45837938, +), ADediting_938053(45838006, +), ADediting_938054(45838044, +), ADediting_938055(45838152, +), ADediting_938056(45838157, +), ADediting_938057(45838199, +), ADediting_938058(45838224, +), ADediting_938059(45838266, +), ADediting_938060(45838272, +), ADediting_938061(45838283, +), ADediting_938062(45838292, +), ADediting_938063(45838317, +), ADediting_938064(45838318, +), ADediting_938065(45838335, +), ADediting_938066(45838344, +), ADediting_938067(45838345, +), ADediting_938068(45838348, +), ADediting_938069(45838357, +), ADediting_938070(45838363, +), ADediting_938071(45838471, +), ADediting_938072(45838490, +), ADediting_938073(45838492, +), ADediting_938074(45838498, +), ADediting_938075(45838499, +), ADediting_938076(45838529, +), ADediting_938077(45838539, +), ADediting_938078(45838544, +), ADediting_938079(45838552, +), ADediting_938080(45838553, +), ADediting_938081(45838578, +), ADediting_938082(45838589, +), ADediting_938083(45838592, +), ADediting_938084(45838594, +), ADediting_938085(45838595, +), ADediting_938086(45838596, +), ADediting_938087(45838598, +), ADediting_938088(45838603, +), ADediting_938089(45838604, +), ADediting_938090(45838607, +), ADediting_938091(45838623, +), ADediting_938092(45838633, +), ADediting_938093(45838634, +), ADediting_938094(45838639, +), ADediting_938095(45838643, +), ADediting_938096(45838656, +), ADediting_938097(45838660, +), ADediting_938098(45838666, +), ADediting_938099(45838675, +), ADediting_938100(45838679, +), ADediting_938101(45838686, +), ADediting_938102(45838695, +), ADediting_938103(45838917, +), ADediting_938104(45838925, +), ADediting_938105(45838957, +), ADediting_938106(45838958, +), ADediting_938107(45838968, +), ADediting_938108(45838971, +), ADediting_938109(45838974, +), ADediting_938110(45838980, +), ADediting_938111(45838987, +), ADediting_938112(45838994, +), ADediting_938113(45838998, +), ADediting_938114(45839011, +), ADediting_938115(45839019, +), ADediting_938116(45839023, +), ADediting_938117(45839033, +), ADediting_938118(45839039, +), ADediting_938119(45839049, +), ADediting_938120(45839067, +), ADediting_938121(45839073, +), ADediting_938122(45839076, +), ADediting_938123(45839082, +), ADediting_938124(45839093, +), ADediting_938125(45839115, +), ADediting_938126(45839121, +), ADediting_938127(45839136, +), ADediting_938128(45839145, +), ADediting_938129(45839154, +), ADediting_938130(45839155, +), ADediting_938131(45839169, +), ADediting_938132(45839254, +), ADediting_938133(45839258, +), ADediting_938134(45839260, +), ADediting_938135(45839261, +), ADediting_938136(45839269, +), ADediting_938137(45839299, +), ADediting_938138(45839328, +), ADediting_938139(45839332, +), ADediting_938140(45839359, +), ADediting_938141(45839369, +), ADediting_938142(45839379, +), ADediting_938143(45839395, +), ADediting_938144(45839401, +), ADediting_938145(45839405, +), ADediting_938146(45839437, +), ADediting_938147(45839441, +), ADediting_938148(45839457, +), ADediting_938149(45839512, +), ADediting_938150(45839652, +), ADediting_938151(45839665, +), ADediting_938152(45839675, +), ADediting_938153(45839689, +), ADediting_938154(45839700, +), ADediting_938155(45839786, +), ADediting_938156(45839788, +), ADediting_938157(45839794, +), ADediting_938158(45839798, +), ADediting_938159(45839815, +), ADediting_938160(45839834, +), ADediting_938161(45839844, +), ADediting_938162(45839850, +), ADediting_938163(45839853, +), ADediting_938164(45839854, +), ADediting_938165(45839858, +), ADediting_938166(45839895, +), ADediting_1566993(45837914, +), ADediting_1566994(45839167, +), ADediting_1566995(45839869, +), |
Top |
RNA editing positional annotations for SNX21 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| ADediting_938060 | chr20_45838272_+ | nonsynonymous SNV | ENST00000614929.4 | c.A452G | p.Q151R | . | . | . |
| ADediting_938061 | chr20_45838283_+ | nonsynonymous SNV | ENST00000614929.4 | c.A463G | p.M155V | . | . | . |
| ADediting_938062 | chr20_45838292_+ | nonsynonymous SNV | ENST00000614929.4 | c.A472G | p.R158G | . | . | . |
| ADediting_938063 | chr20_45838317_+ | synonymous SNV | ENST00000614929.4 | c.A497G | p.X166X | . | . | . |
| ADediting_938064 | chr20_45838318_+ | synonymous SNV | ENST00000614929.4 | c.A498G | p.X166X | . | . | . |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_938019 | chr20_45836243_+ | intronic |
| ADediting_938020 | chr20_45836376_+ | intronic |
| ADediting_938021 | chr20_45836380_+ | intronic |
| ADediting_938022 | chr20_45836397_+ | intronic |
| ADediting_938023 | chr20_45836403_+ | intronic |
| ADediting_938024 | chr20_45836412_+ | intronic |
| ADediting_938025 | chr20_45836432_+ | intronic |
| ADediting_938026 | chr20_45836470_+ | intronic |
| ADediting_938027 | chr20_45836471_+ | intronic |
| ADediting_938028 | chr20_45836473_+ | intronic |
| ADediting_938029 | chr20_45836527_+ | intronic |
| ADediting_938030 | chr20_45836543_+ | intronic |
| ADediting_938031 | chr20_45836574_+ | intronic |
| ADediting_938032 | chr20_45836581_+ | intronic |
| ADediting_938033 | chr20_45836584_+ | intronic |
| ADediting_938034 | chr20_45836600_+ | intronic |
| ADediting_938035 | chr20_45836601_+ | intronic |
| ADediting_938036 | chr20_45836613_+ | intronic |
| ADediting_938037 | chr20_45836618_+ | intronic |
| ADediting_938038 | chr20_45836634_+ | intronic |
| ADediting_938040 | chr20_45837792_+ | intronic |
| ADediting_938041 | chr20_45837837_+ | intronic |
| ADediting_938042 | chr20_45837842_+ | intronic |
| ADediting_938043 | chr20_45837847_+ | intronic |
| ADediting_938044 | chr20_45837853_+ | intronic |
| ADediting_938045 | chr20_45837859_+ | intronic |
| ADediting_938046 | chr20_45837866_+ | intronic |
| ADediting_938047 | chr20_45837872_+ | intronic |
| ADediting_938048 | chr20_45837873_+ | intronic |
| ADediting_938049 | chr20_45837902_+ | intronic |
| ADediting_938050 | chr20_45837906_+ | intronic |
| ADediting_938051 | chr20_45837912_+ | intronic |
| ADediting_938052 | chr20_45837938_+ | intronic |
| ADediting_938053 | chr20_45838006_+ | intronic |
| ADediting_938054 | chr20_45838044_+ | intronic |
| ADediting_938055 | chr20_45838152_+ | intronic |
| ADediting_938056 | chr20_45838157_+ | intronic |
| ADediting_938057 | chr20_45838199_+ | intronic |
| ADediting_938058 | chr20_45838224_+ | intronic |
| ADediting_938059 | chr20_45838266_+ | splicing |
| ADediting_938060 | chr20_45838272_+ | exonic |
| ADediting_938061 | chr20_45838283_+ | exonic |
| ADediting_938062 | chr20_45838292_+ | exonic |
| ADediting_938063 | chr20_45838317_+ | exonic |
| ADediting_938064 | chr20_45838318_+ | exonic |
| ADediting_938065 | chr20_45838335_+ | intronic |
| ADediting_938066 | chr20_45838344_+ | intronic |
| ADediting_938067 | chr20_45838345_+ | intronic |
| ADediting_938068 | chr20_45838348_+ | intronic |
| ADediting_938069 | chr20_45838357_+ | intronic |
| ADediting_938070 | chr20_45838363_+ | intronic |
| ADediting_938071 | chr20_45838471_+ | intronic |
| ADediting_938072 | chr20_45838490_+ | intronic |
| ADediting_938073 | chr20_45838492_+ | intronic |
| ADediting_938074 | chr20_45838498_+ | intronic |
| ADediting_938075 | chr20_45838499_+ | intronic |
| ADediting_938076 | chr20_45838529_+ | intronic |
| ADediting_938077 | chr20_45838539_+ | intronic |
| ADediting_938078 | chr20_45838544_+ | intronic |
| ADediting_938079 | chr20_45838552_+ | intronic |
| ADediting_938080 | chr20_45838553_+ | intronic |
| ADediting_938081 | chr20_45838578_+ | intronic |
| ADediting_938082 | chr20_45838589_+ | intronic |
| ADediting_938083 | chr20_45838592_+ | intronic |
| ADediting_938084 | chr20_45838594_+ | intronic |
| ADediting_938085 | chr20_45838595_+ | intronic |
| ADediting_938086 | chr20_45838596_+ | intronic |
| ADediting_938087 | chr20_45838598_+ | intronic |
| ADediting_938088 | chr20_45838603_+ | intronic |
| ADediting_938089 | chr20_45838604_+ | intronic |
| ADediting_938090 | chr20_45838607_+ | intronic |
| ADediting_938091 | chr20_45838623_+ | intronic |
| ADediting_938092 | chr20_45838633_+ | intronic |
| ADediting_938093 | chr20_45838634_+ | intronic |
| ADediting_938094 | chr20_45838639_+ | intronic |
| ADediting_938095 | chr20_45838643_+ | intronic |
| ADediting_938096 | chr20_45838656_+ | intronic |
| ADediting_938097 | chr20_45838660_+ | intronic |
| ADediting_938098 | chr20_45838666_+ | intronic |
| ADediting_938099 | chr20_45838675_+ | intronic |
| ADediting_938100 | chr20_45838679_+ | intronic |
| ADediting_938101 | chr20_45838686_+ | intronic |
| ADediting_938102 | chr20_45838695_+ | intronic |
| ADediting_938103 | chr20_45838917_+ | intronic |
| ADediting_938104 | chr20_45838925_+ | intronic |
| ADediting_938105 | chr20_45838957_+ | intronic |
| ADediting_938106 | chr20_45838958_+ | intronic |
| ADediting_938107 | chr20_45838968_+ | intronic |
| ADediting_938108 | chr20_45838971_+ | intronic |
| ADediting_938109 | chr20_45838974_+ | intronic |
| ADediting_938110 | chr20_45838980_+ | intronic |
| ADediting_938111 | chr20_45838987_+ | intronic |
| ADediting_938112 | chr20_45838994_+ | intronic |
| ADediting_938113 | chr20_45838998_+ | intronic |
| ADediting_938114 | chr20_45839011_+ | intronic |
| ADediting_938115 | chr20_45839019_+ | intronic |
| ADediting_938116 | chr20_45839023_+ | intronic |
| ADediting_938117 | chr20_45839033_+ | intronic |
| ADediting_938118 | chr20_45839039_+ | intronic |
| ADediting_938119 | chr20_45839049_+ | intronic |
| ADediting_938120 | chr20_45839067_+ | intronic |
| ADediting_938121 | chr20_45839073_+ | intronic |
| ADediting_938122 | chr20_45839076_+ | intronic |
| ADediting_938123 | chr20_45839082_+ | intronic |
| ADediting_938124 | chr20_45839093_+ | intronic |
| ADediting_938125 | chr20_45839115_+ | intronic |
| ADediting_938126 | chr20_45839121_+ | intronic |
| ADediting_938127 | chr20_45839136_+ | intronic |
| ADediting_938128 | chr20_45839145_+ | intronic |
| ADediting_938129 | chr20_45839154_+ | intronic |
| ADediting_938130 | chr20_45839155_+ | intronic |
| ADediting_938131 | chr20_45839169_+ | intronic |
| ADediting_938132 | chr20_45839254_+ | intronic |
| ADediting_938133 | chr20_45839258_+ | intronic |
| ADediting_938134 | chr20_45839260_+ | intronic |
| ADediting_938135 | chr20_45839261_+ | intronic |
| ADediting_938136 | chr20_45839269_+ | intronic |
| ADediting_938137 | chr20_45839299_+ | intronic |
| ADediting_938138 | chr20_45839328_+ | intronic |
| ADediting_938139 | chr20_45839332_+ | intronic |
| ADediting_938140 | chr20_45839359_+ | intronic |
| ADediting_938141 | chr20_45839369_+ | intronic |
| ADediting_938142 | chr20_45839379_+ | intronic |
| ADediting_938143 | chr20_45839395_+ | intronic |
| ADediting_938144 | chr20_45839401_+ | intronic |
| ADediting_938145 | chr20_45839405_+ | intronic |
| ADediting_938146 | chr20_45839437_+ | intronic |
| ADediting_938147 | chr20_45839441_+ | intronic |
| ADediting_938148 | chr20_45839457_+ | intronic |
| ADediting_938149 | chr20_45839512_+ | intronic |
| ADediting_938150 | chr20_45839652_+ | intronic |
| ADediting_938151 | chr20_45839665_+ | intronic |
| ADediting_938152 | chr20_45839675_+ | intronic |
| ADediting_938153 | chr20_45839689_+ | intronic |
| ADediting_938154 | chr20_45839700_+ | intronic |
| ADediting_938155 | chr20_45839786_+ | intronic |
| ADediting_938156 | chr20_45839788_+ | intronic |
| ADediting_938157 | chr20_45839794_+ | intronic |
| ADediting_938158 | chr20_45839798_+ | intronic |
| ADediting_938159 | chr20_45839815_+ | intronic |
| ADediting_938160 | chr20_45839834_+ | intronic |
| ADediting_938161 | chr20_45839844_+ | intronic |
| ADediting_938162 | chr20_45839850_+ | intronic |
| ADediting_938163 | chr20_45839853_+ | intronic |
| ADediting_938164 | chr20_45839854_+ | intronic |
| ADediting_938165 | chr20_45839858_+ | intronic |
| ADediting_938166 | chr20_45839895_+ | intronic |
| ADediting_1566993 | chr20_45837914_+ | intronic |
| ADediting_1566994 | chr20_45839167_+ | intronic |
| ADediting_1566995 | chr20_45839869_+ | intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_938019 | chr20_45836243_+ | SINE | Alu | Name=AluY |
| ADediting_938020 | chr20_45836376_+ | SINE | Alu | Name=AluY |
| ADediting_938021 | chr20_45836380_+ | SINE | Alu | Name=AluY |
| ADediting_938022 | chr20_45836397_+ | SINE | Alu | Name=AluY |
| ADediting_938023 | chr20_45836403_+ | SINE | Alu | Name=AluY |
| ADediting_938024 | chr20_45836412_+ | SINE | Alu | Name=AluY |
| ADediting_938025 | chr20_45836432_+ | SINE | Alu | Name=AluY |
| ADediting_938026 | chr20_45836470_+ | SINE | Alu | Name=AluY |
| ADediting_938027 | chr20_45836471_+ | SINE | Alu | Name=AluY |
| ADediting_938028 | chr20_45836473_+ | SINE | Alu | Name=AluY |
| ADediting_938029 | chr20_45836527_+ | SINE | Alu | Name=AluJr |
| ADediting_938030 | chr20_45836543_+ | SINE | Alu | Name=AluJr |
| ADediting_938031 | chr20_45836574_+ | SINE | Alu | Name=AluJr |
| ADediting_938032 | chr20_45836581_+ | SINE | Alu | Name=AluJr |
| ADediting_938033 | chr20_45836584_+ | SINE | Alu | Name=AluJr |
| ADediting_938034 | chr20_45836600_+ | SINE | Alu | Name=AluJr |
| ADediting_938035 | chr20_45836601_+ | SINE | Alu | Name=AluJr |
| ADediting_938036 | chr20_45836613_+ | SINE | Alu | Name=AluJr |
| ADediting_938037 | chr20_45836618_+ | SINE | Alu | Name=AluJr |
| ADediting_938038 | chr20_45836634_+ | SINE | Alu | Name=AluJr |
| ADediting_938040 | chr20_45837792_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938041 | chr20_45837837_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938042 | chr20_45837842_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938043 | chr20_45837847_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938044 | chr20_45837853_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938045 | chr20_45837859_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938046 | chr20_45837866_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938047 | chr20_45837872_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938048 | chr20_45837873_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938049 | chr20_45837902_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938050 | chr20_45837906_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938051 | chr20_45837912_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938052 | chr20_45837938_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938053 | chr20_45838006_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938054 | chr20_45838044_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938055 | chr20_45838152_+ | SINE | Alu | Name=AluJr |
| ADediting_938056 | chr20_45838157_+ | SINE | Alu | Name=AluJr |
| ADediting_938057 | chr20_45838199_+ | SINE | Alu | Name=AluJr |
| ADediting_938058 | chr20_45838224_+ | SINE | Alu | Name=AluJr |
| ADediting_938059 | chr20_45838266_+ | SINE | Alu | Name=AluJr |
| ADediting_938060 | chr20_45838272_+ | SINE | Alu | Name=AluJr |
| ADediting_938061 | chr20_45838283_+ | SINE | Alu | Name=AluJr |
| ADediting_938062 | chr20_45838292_+ | SINE | Alu | Name=AluJr |
| ADediting_938063 | chr20_45838317_+ | SINE | Alu | Name=AluJr |
| ADediting_938064 | chr20_45838318_+ | SINE | Alu | Name=AluJr |
| ADediting_938065 | chr20_45838335_+ | SINE | Alu | Name=AluJr |
| ADediting_938066 | chr20_45838344_+ | SINE | Alu | Name=AluJr |
| ADediting_938067 | chr20_45838345_+ | SINE | Alu | Name=AluJr |
| ADediting_938068 | chr20_45838348_+ | SINE | Alu | Name=AluJr |
| ADediting_938069 | chr20_45838357_+ | SINE | Alu | Name=AluJr |
| ADediting_938070 | chr20_45838363_+ | SINE | Alu | Name=AluJr |
| ADediting_938071 | chr20_45838471_+ | DNA | hAT-Charlie | Name=MER113 |
| ADediting_938072 | chr20_45838490_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938073 | chr20_45838492_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938074 | chr20_45838498_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938075 | chr20_45838499_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938076 | chr20_45838529_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938077 | chr20_45838539_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938078 | chr20_45838544_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938079 | chr20_45838552_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938080 | chr20_45838553_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938081 | chr20_45838578_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938082 | chr20_45838589_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938083 | chr20_45838592_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938084 | chr20_45838594_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938085 | chr20_45838595_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938086 | chr20_45838596_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938087 | chr20_45838598_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938088 | chr20_45838603_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938089 | chr20_45838604_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938090 | chr20_45838607_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938091 | chr20_45838623_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938092 | chr20_45838633_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938093 | chr20_45838634_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938094 | chr20_45838639_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938095 | chr20_45838643_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938096 | chr20_45838656_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938097 | chr20_45838660_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938098 | chr20_45838666_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938099 | chr20_45838675_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938100 | chr20_45838679_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938101 | chr20_45838686_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938102 | chr20_45838695_+ | SINE | Alu | Name=AluSx1 |
| ADediting_938103 | chr20_45838917_+ | SINE | Alu | Name=AluSp |
| ADediting_938104 | chr20_45838925_+ | SINE | Alu | Name=AluSp |
| ADediting_938105 | chr20_45838957_+ | SINE | Alu | Name=AluSp |
| ADediting_938106 | chr20_45838958_+ | SINE | Alu | Name=AluSp |
| ADediting_938107 | chr20_45838968_+ | SINE | Alu | Name=AluSp |
| ADediting_938108 | chr20_45838971_+ | SINE | Alu | Name=AluSp |
| ADediting_938109 | chr20_45838974_+ | SINE | Alu | Name=AluSp |
| ADediting_938110 | chr20_45838980_+ | SINE | Alu | Name=AluSp |
| ADediting_938111 | chr20_45838987_+ | SINE | Alu | Name=AluSp |
| ADediting_938112 | chr20_45838994_+ | SINE | Alu | Name=AluSp |
| ADediting_938113 | chr20_45838998_+ | SINE | Alu | Name=AluSp |
| ADediting_938114 | chr20_45839011_+ | SINE | Alu | Name=AluSp |
| ADediting_938115 | chr20_45839019_+ | SINE | Alu | Name=AluSp |
| ADediting_938116 | chr20_45839023_+ | SINE | Alu | Name=AluSp |
| ADediting_938117 | chr20_45839033_+ | SINE | Alu | Name=AluSp |
| ADediting_938118 | chr20_45839039_+ | SINE | Alu | Name=AluSp |
| ADediting_938119 | chr20_45839049_+ | SINE | Alu | Name=AluSp |
| ADediting_938120 | chr20_45839067_+ | SINE | Alu | Name=AluSp |
| ADediting_938121 | chr20_45839073_+ | SINE | Alu | Name=AluSp |
| ADediting_938122 | chr20_45839076_+ | SINE | Alu | Name=AluSp |
| ADediting_938123 | chr20_45839082_+ | SINE | Alu | Name=AluSp |
| ADediting_938124 | chr20_45839093_+ | SINE | Alu | Name=AluSp |
| ADediting_938125 | chr20_45839115_+ | SINE | Alu | Name=AluSp |
| ADediting_938126 | chr20_45839121_+ | SINE | Alu | Name=AluSp |
| ADediting_938127 | chr20_45839136_+ | SINE | Alu | Name=AluSp |
| ADediting_938128 | chr20_45839145_+ | SINE | Alu | Name=AluSp |
| ADediting_938129 | chr20_45839154_+ | SINE | Alu | Name=AluSp |
| ADediting_938130 | chr20_45839155_+ | SINE | Alu | Name=AluSp |
| ADediting_938131 | chr20_45839169_+ | SINE | Alu | Name=AluSp |
| ADediting_938132 | chr20_45839254_+ | SINE | Alu | Name=AluY |
| ADediting_938133 | chr20_45839258_+ | SINE | Alu | Name=AluY |
| ADediting_938134 | chr20_45839260_+ | SINE | Alu | Name=AluY |
| ADediting_938135 | chr20_45839261_+ | SINE | Alu | Name=AluY |
| ADediting_938136 | chr20_45839269_+ | SINE | Alu | Name=AluY |
| ADediting_938137 | chr20_45839299_+ | SINE | Alu | Name=AluY |
| ADediting_938138 | chr20_45839328_+ | SINE | Alu | Name=AluY |
| ADediting_938139 | chr20_45839332_+ | SINE | Alu | Name=AluY |
| ADediting_938140 | chr20_45839359_+ | SINE | Alu | Name=AluY |
| ADediting_938141 | chr20_45839369_+ | SINE | Alu | Name=AluY |
| ADediting_938142 | chr20_45839379_+ | SINE | Alu | Name=AluY |
| ADediting_938143 | chr20_45839395_+ | SINE | Alu | Name=AluY |
| ADediting_938144 | chr20_45839401_+ | SINE | Alu | Name=AluY |
| ADediting_938145 | chr20_45839405_+ | SINE | Alu | Name=AluY |
| ADediting_938146 | chr20_45839437_+ | SINE | Alu | Name=AluY |
| ADediting_938147 | chr20_45839441_+ | SINE | Alu | Name=AluY |
| ADediting_938148 | chr20_45839457_+ | SINE | Alu | Name=AluY |
| ADediting_938149 | chr20_45839512_+ | SINE | Alu | Name=AluY |
| ADediting_938150 | chr20_45839652_+ | SINE | Alu | Name=AluJr |
| ADediting_938151 | chr20_45839665_+ | SINE | Alu | Name=AluJr |
| ADediting_938152 | chr20_45839675_+ | SINE | Alu | Name=AluJr |
| ADediting_938153 | chr20_45839689_+ | SINE | Alu | Name=AluJr |
| ADediting_938154 | chr20_45839700_+ | SINE | Alu | Name=AluJr |
| ADediting_938155 | chr20_45839786_+ | SINE | Alu | Name=AluJr |
| ADediting_938156 | chr20_45839788_+ | SINE | Alu | Name=AluJr |
| ADediting_938157 | chr20_45839794_+ | SINE | Alu | Name=AluJr |
| ADediting_938158 | chr20_45839798_+ | SINE | Alu | Name=AluJr |
| ADediting_938159 | chr20_45839815_+ | SINE | Alu | Name=AluJr |
| ADediting_938160 | chr20_45839834_+ | SINE | Alu | Name=AluJr |
| ADediting_938161 | chr20_45839844_+ | SINE | Alu | Name=AluJr |
| ADediting_938162 | chr20_45839850_+ | SINE | Alu | Name=AluJr |
| ADediting_938163 | chr20_45839853_+ | SINE | Alu | Name=AluJr |
| ADediting_938164 | chr20_45839854_+ | SINE | Alu | Name=AluJr |
| ADediting_938165 | chr20_45839858_+ | SINE | Alu | Name=AluJr |
| ADediting_938166 | chr20_45839895_+ | SINE | Alu | Name=AluJr |
| ADediting_1566993 | chr20_45837914_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1566994 | chr20_45839167_+ | SINE | Alu | Name=AluSp |
| ADediting_1566995 | chr20_45839869_+ | SINE | Alu | Name=AluJr |
Top |
RNA A-to-I editing events in the alternative splicing sites for SNX21 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| ES | ADediting_938059 | chr20_45838266_+ | 45838248:45838270 | 3ss | 2i | TTTCTTTTTCTTTTTTTTAGAGA | 11.11 | TTTCTTTTTCTTTTTTTTGGAGA | 3.15 |
| ES | ADediting_938059 | chr20_45838266_+ | 45838248:45838270 | 3ss | 2i | TTTCTTTTTCTTTTTTTTAGAGA | 11.11 | TTTCTTTTTCTTTTTTTTGGAGA | 3.15 |
| ES | ADediting_938059 | chr20_45838266_+ | 45838248:45838270 | 3ss | 2i | TTTCTTTTTCTTTTTTTTAGAGA | 11.11 | TTTCTTTTTCTTTTTTTTGGAGA | 3.15 |
| ES | ADediting_938070 | chr20_45838363_+ | 45838358:45838366 | 5ss | 3i | CAGGTATGA | 9.46 | CAGGTGTGA | 5.29 |
| ES | ADediting_938070 | chr20_45838363_+ | 45838358:45838366 | 5ss | 3i | CAGGTATGA | 9.46 | CAGGTGTGA | 5.29 |
| ES | ADediting_938070 | chr20_45838363_+ | 45838358:45838366 | 5ss | 3i | CAGGTATGA | 9.46 | CAGGTGTGA | 5.29 |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for SNX21 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
Top |
Protein coding region RNA A-to-I editings for SNX21 |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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Top |
The effects of the RNA editing to the miRNA binding sites for SNX21 |
| RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. |
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| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_938060 | chr20_45838272_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-340-3p | chr20 | 45835116 | 45838273 | 7mer-m8 | 45835102 | 45838274 | 164 | -21.2 |
| ADediting_938060 | chr20_45838272_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-6827-3p | chr20 | 45835116 | 45838273 | 7mer-m8 | 45835103 | 45838274 | 147 | -14.98 |
| ADediting_938060 | chr20_45838272_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-340-3p | chr20 | 45835116 | 45838273 | 7mer-m8 | 45835102 | 45838274 | 164 | -21.2 |
| ADediting_938060 | chr20_45838272_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-6827-3p | chr20 | 45835116 | 45838273 | 7mer-m8 | 45835103 | 45838274 | 147 | -14.98 |
| ADediting_938061 | chr20_45838283_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-4445-3p | chr20 | 45838278 | 45838284 | 7mer-m8 | 45835114 | 45838285 | 142 | -17.33 |
| ADediting_938061 | chr20_45838283_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-548al | chr20 | 45838278 | 45838284 | 7mer-m8 | 45835115 | 45838285 | 154 | -19.47 |
| ADediting_938061 | chr20_45838283_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-4445-3p | chr20 | 45838278 | 45838284 | 7mer-m8 | 45835114 | 45838285 | 142 | -17.33 |
| ADediting_938061 | chr20_45838283_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-548al | chr20 | 45838278 | 45838284 | 7mer-m8 | 45835115 | 45838285 | 154 | -19.47 |
| ADediting_938062 | chr20_45838292_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-3940-3p | chr20 | 45838290 | 45838296 | 7mer-m8 | 45838276 | 45838297 | 143 | -21.15 |
| ADediting_938062 | chr20_45838292_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-3940-3p | chr20 | 45838290 | 45838296 | 7mer-m8 | 45838276 | 45838297 | 143 | -21.15 |
| ADediting_938065 | chr20_45838335_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-6089 | chr20 | 45838334 | 45838340 | 7mer-m8 | 45838317 | 45838341 | 165 | -41.39 |
| ADediting_938065 | chr20_45838335_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-6089 | chr20 | 45838334 | 45838340 | 7mer-m8 | 45838317 | 45838341 | 165 | -41.39 |
| ADediting_938066 | chr20_45838344_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-326 | chr20 | 45838340 | 45838346 | 7mer-m8 | 45838328 | 45838347 | 140 | -13.96 |
| ADediting_938066 | chr20_45838344_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-330-5p | chr20 | 45838340 | 45838346 | 7mer-m8 | 45838324 | 45838347 | 143 | -22.06 |
| ADediting_938066 | chr20_45838344_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-4314 | chr20 | 45838339 | 45838345 | 7mer-m8 | 45838328 | 45838346 | 143 | -24.03 |
| ADediting_938066 | chr20_45838344_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-514a-5p | chr20 | 45838341 | 45838348 | 8mer-1a | 45838325 | 45838348 | 150 | -18.72 |
| ADediting_938066 | chr20_45838344_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-326 | chr20 | 45838340 | 45838346 | 7mer-m8 | 45838328 | 45838347 | 140 | -13.96 |
| ADediting_938066 | chr20_45838344_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-330-5p | chr20 | 45838340 | 45838346 | 7mer-m8 | 45838324 | 45838347 | 143 | -22.06 |
| ADediting_938066 | chr20_45838344_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-4314 | chr20 | 45838339 | 45838345 | 7mer-m8 | 45838328 | 45838346 | 143 | -24.03 |
| ADediting_938066 | chr20_45838344_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-514a-5p | chr20 | 45838341 | 45838348 | 8mer-1a | 45838325 | 45838348 | 150 | -18.72 |
| ADediting_938067 | chr20_45838345_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-3189-3p | chr20 | 45838340 | 45838346 | 7mer-m8 | 45838328 | 45838347 | 149 | -25.49 |
| ADediting_938067 | chr20_45838345_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-6813-3p | chr20 | 45838341 | 45838348 | 8mer-1a | 45838328 | 45838348 | 140 | -11.56 |
| ADediting_938067 | chr20_45838345_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-3189-3p | chr20 | 45838340 | 45838346 | 7mer-m8 | 45838328 | 45838347 | 149 | -25.49 |
| ADediting_938067 | chr20_45838345_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-6813-3p | chr20 | 45838341 | 45838348 | 8mer-1a | 45838328 | 45838348 | 140 | -11.56 |
| ADediting_938068 | chr20_45838348_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-383-3p | chr20 | 45838345 | 45838351 | 7mer-m8 | 45838334 | 45838352 | 140 | -14.49 |
| ADediting_938068 | chr20_45838348_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-383-3p | chr20 | 45838345 | 45838351 | 7mer-m8 | 45838334 | 45838352 | 140 | -14.49 |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_938060 | chr20_45838272_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-10a-5p | chr20 | 45838270 | 45838276 | 7mer-m8 | 45835105 | 45838277 | 153 | -21.09 |
| ADediting_938060 | chr20_45838272_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-10b-5p | chr20 | 45838270 | 45838276 | 7mer-m8 | 45835105 | 45838277 | 155 | -18.36 |
| ADediting_938060 | chr20_45838272_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-339-5p | chr20 | 45838269 | 45838275 | 7mer-m8 | 45835105 | 45838276 | 147 | -24.34 |
| ADediting_938060 | chr20_45838272_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-4421 | chr20 | 45838268 | 45838274 | 7mer-m8 | 45835101 | 45838275 | 145 | -19.71 |
| ADediting_938060 | chr20_45838272_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-4725-5p | chr20 | 45838271 | 45838277 | 7mer-m8 | 45835107 | 45838278 | 140 | -16.36 |
| ADediting_938060 | chr20_45838272_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-504-5p | chr20 | 45838271 | 45838277 | 7mer-m8 | 45835108 | 45838278 | 152 | -22.19 |
| ADediting_938060 | chr20_45838272_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-10a-5p | chr20 | 45838270 | 45838276 | 7mer-m8 | 45835105 | 45838277 | 153 | -21.09 |
| ADediting_938060 | chr20_45838272_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-10b-5p | chr20 | 45838270 | 45838276 | 7mer-m8 | 45835105 | 45838277 | 155 | -18.36 |
| ADediting_938060 | chr20_45838272_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-339-5p | chr20 | 45838269 | 45838275 | 7mer-m8 | 45835105 | 45838276 | 147 | -24.34 |
| ADediting_938060 | chr20_45838272_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-4421 | chr20 | 45838268 | 45838274 | 7mer-m8 | 45835101 | 45838275 | 145 | -19.71 |
| ADediting_938060 | chr20_45838272_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-4725-5p | chr20 | 45838271 | 45838277 | 7mer-m8 | 45835107 | 45838278 | 140 | -16.36 |
| ADediting_938060 | chr20_45838272_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-504-5p | chr20 | 45838271 | 45838277 | 7mer-m8 | 45835108 | 45838278 | 152 | -22.19 |
| ADediting_938061 | chr20_45838283_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-942-3p | chr20 | 45838280 | 45838286 | 7mer-m8 | 45835116 | 45838287 | 144 | -11.49 |
| ADediting_938061 | chr20_45838283_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-942-3p | chr20 | 45838280 | 45838286 | 7mer-m8 | 45835116 | 45838287 | 144 | -11.49 |
| ADediting_938062 | chr20_45838292_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-5189-5p | chr20 | 45838287 | 45838293 | 7mer-m8 | 45838272 | 45838294 | 151 | -26.84 |
| ADediting_938062 | chr20_45838292_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-612 | chr20 | 45838287 | 45838293 | 7mer-m8 | 45838271 | 45838294 | 149 | -23.44 |
| ADediting_938062 | chr20_45838292_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-661 | chr20 | 45838289 | 45838295 | 7mer-m8 | 45838272 | 45838296 | 151 | -24.65 |
| ADediting_938062 | chr20_45838292_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-6860 | chr20 | 45838287 | 45838293 | 7mer-m8 | 45838276 | 45838294 | 148 | -21.93 |
| ADediting_938062 | chr20_45838292_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-939-3p | chr20 | 45838288 | 45838294 | 7mer-m8 | 45838275 | 45838295 | 140 | -15.63 |
| ADediting_938062 | chr20_45838292_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-5189-5p | chr20 | 45838287 | 45838293 | 7mer-m8 | 45838272 | 45838294 | 151 | -26.84 |
| ADediting_938062 | chr20_45838292_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-612 | chr20 | 45838287 | 45838293 | 7mer-m8 | 45838271 | 45838294 | 149 | -23.44 |
| ADediting_938062 | chr20_45838292_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-661 | chr20 | 45838289 | 45838295 | 7mer-m8 | 45838272 | 45838296 | 151 | -24.65 |
| ADediting_938062 | chr20_45838292_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-6860 | chr20 | 45838287 | 45838293 | 7mer-m8 | 45838276 | 45838294 | 148 | -21.93 |
| ADediting_938062 | chr20_45838292_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-939-3p | chr20 | 45838288 | 45838294 | 7mer-m8 | 45838275 | 45838295 | 140 | -15.63 |
| ADediting_938063 | chr20_45838317_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-4720-3p | chr20 | 45838314 | 45838320 | 7mer-m8 | 45838301 | 45838321 | 140 | -10.77 |
| ADediting_938063 | chr20_45838317_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-4720-3p | chr20 | 45838314 | 45838320 | 7mer-m8 | 45838301 | 45838321 | 140 | -10.77 |
| ADediting_938064 | chr20_45838318_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-4720-3p | chr20 | 45838314 | 45838320 | 7mer-m8 | 45838301 | 45838321 | 140 | -10.77 |
| ADediting_938064 | chr20_45838318_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-4720-3p | chr20 | 45838314 | 45838320 | 7mer-m8 | 45838301 | 45838321 | 140 | -10.77 |
| ADediting_938065 | chr20_45838335_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-4478 | chr20 | 45838333 | 45838339 | 7mer-m8 | 45838325 | 45838340 | 149 | -25.05 |
| ADediting_938065 | chr20_45838335_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-4649-3p | chr20 | 45838330 | 45838336 | 7mer-m8 | 45838317 | 45838337 | 140 | -14.11 |
| ADediting_938065 | chr20_45838335_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-485-5p | chr20 | 45838334 | 45838340 | 7mer-m8 | 45838320 | 45838341 | 153 | -18.86 |
| ADediting_938065 | chr20_45838335_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-7160-5p | chr20 | 45838331 | 45838337 | 7mer-m8 | 45838318 | 45838338 | 146 | -17.67 |
| ADediting_938065 | chr20_45838335_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-4478 | chr20 | 45838333 | 45838339 | 7mer-m8 | 45838325 | 45838340 | 149 | -25.05 |
| ADediting_938065 | chr20_45838335_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-4649-3p | chr20 | 45838330 | 45838336 | 7mer-m8 | 45838317 | 45838337 | 140 | -14.11 |
| ADediting_938065 | chr20_45838335_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-485-5p | chr20 | 45838334 | 45838340 | 7mer-m8 | 45838320 | 45838341 | 153 | -18.86 |
| ADediting_938065 | chr20_45838335_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-7160-5p | chr20 | 45838331 | 45838337 | 7mer-m8 | 45838318 | 45838338 | 146 | -17.67 |
| ADediting_938066 | chr20_45838344_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-887-5p | chr20 | 45838338 | 45838345 | 8mer-1a | 45838326 | 45838345 | 143 | -15.14 |
| ADediting_938066 | chr20_45838344_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-887-5p | chr20 | 45838338 | 45838345 | 8mer-1a | 45838326 | 45838345 | 143 | -15.14 |
| ADediting_938068 | chr20_45838348_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-4712-5p | chr20 | 45838346 | 45838352 | 7mer-m8 | 45838332 | 45838353 | 140 | -14.66 |
| ADediting_938068 | chr20_45838348_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-770-5p | chr20 | 45838346 | 45838352 | 7mer-m8 | 45838331 | 45838353 | 140 | -18.17 |
| ADediting_938068 | chr20_45838348_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-4712-5p | chr20 | 45838346 | 45838352 | 7mer-m8 | 45838332 | 45838353 | 140 | -14.66 |
| ADediting_938068 | chr20_45838348_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-770-5p | chr20 | 45838346 | 45838352 | 7mer-m8 | 45838331 | 45838353 | 140 | -18.17 |
| ADediting_938069 | chr20_45838357_+ | ENSG00000124104.19 | ENST00000472219.5 | SNX21-209 | hsa-miR-3686 | chr20 | 45838355 | 45840322 | 7mer-m8 | 45838341 | 45840323 | 140 | -12.04 |
| ADediting_938069 | chr20_45838357_+ | ENSG00000124104.19 | ENST00000478230.5 | SNX21-210 | hsa-miR-3686 | chr20 | 45838355 | 45840448 | 7mer-m8 | 45838341 | 45840449 | 140 | -11.69 |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1471003 | chr9_63819626_+ | ENSG00000124104.19 | ENST00000342644.9 | SNX21-201 | hsa-miR-4477b | chr20 | 45842324 | 45842331 | 8mer-1a | 45842310 | 45842331 | 140 | -11.18 |
| ADediting_1471003 | chr9_63819626_+ | ENSG00000124104.19 | ENST00000491381.6 | SNX21-212 | hsa-miR-4477b | chr20 | 45842324 | 45842331 | 8mer-1a | 45842310 | 45842331 | 140 | -11.18 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000124104.19 | ENST00000342644.9 | SNX21-201 | hsa-miR-381-3p | chr20 | 45842434 | 45842441 | 8mer-1a | 45842416 | 45842441 | 149 | -19.06 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000124104.19 | ENST00000491381.6 | SNX21-212 | hsa-miR-381-3p | chr20 | 45842434 | 45842441 | 8mer-1a | 45842416 | 45842441 | 149 | -19.06 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000124104.19 | ENST00000342644.9 | SNX21-201 | hsa-miR-641 | chr20 | 45842773 | 45842779 | 7mer-m8 | 45842756 | 45842780 | 157 | -16.35 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000124104.19 | ENST00000491381.6 | SNX21-212 | hsa-miR-641 | chr20 | 45842773 | 45842779 | 7mer-m8 | 45842756 | 45842780 | 157 | -16.35 |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_496066 | chr15_66496985_- | ENSG00000124104.19 | ENST00000491381.6 | SNX21-212 | hsa-miR-4512 | chr20 | 45842992 | 45842998 | 7mer-m8 | 45842978 | 45842999 | 149 | -18.85 |
| Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for SNX21 |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000614929.4 | protein_coding |  |  |
| ENST00000472219.5 | lncRNA |  |  |
| ENST00000478230.5 | lncRNA |  |  |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_938060 | ENST00000614929.4 | chr20_45838272_+ | 541 | -270.80 | -270.20 | -272.10 |
| ADediting_938061 | ENST00000614929.4 | chr20_45838283_+ | 552 | -270.80 | -270.20 | -272.10 |
| ADediting_938062 | ENST00000614929.4 | chr20_45838292_+ | 561 | -271.60 | -270.20 | -272.10 |
| ADediting_938063 | ENST00000614929.4 | chr20_45838317_+ | 586 | -271.60 | -270.20 | -272.10 |
| ADediting_938064 | ENST00000614929.4 | chr20_45838318_+ | 587 | -270.20 | -270.20 | -272.10 |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_938060 | ENST00000472219.5 | chr20_45838272_+ | 541 | -844.30 | -843.70 | -853.20 |
| ADediting_938061 | ENST00000472219.5 | chr20_45838283_+ | 552 | -841.10 | -843.70 | -853.20 |
| ADediting_938062 | ENST00000472219.5 | chr20_45838292_+ | 561 | -845.10 | -843.70 | -853.20 |
| ADediting_938063 | ENST00000472219.5 | chr20_45838317_+ | 586 | -847.10 | -843.70 | -853.20 |
| ADediting_938064 | ENST00000472219.5 | chr20_45838318_+ | 587 | -845.30 | -843.70 | -853.20 |
| ADediting_938065 | ENST00000472219.5 | chr20_45838335_+ | 604 | -846.20 | -843.70 | -853.20 |
| ADediting_938066 | ENST00000472219.5 | chr20_45838344_+ | 613 | -844.10 | -843.70 | -853.20 |
| ADediting_938067 | ENST00000472219.5 | chr20_45838345_+ | 614 | -843.70 | -843.70 | -853.20 |
| ADediting_938068 | ENST00000472219.5 | chr20_45838348_+ | 617 | -843.70 | -843.70 | -853.20 |
| ADediting_938069 | ENST00000472219.5 | chr20_45838357_+ | 626 | -843.40 | -843.70 | -853.20 |
| ADediting_938060 | ENST00000478230.5 | chr20_45838272_+ | 275 | -383.90 | -383.30 | -400.90 |
| ADediting_938061 | ENST00000478230.5 | chr20_45838283_+ | 286 | -380.70 | -383.30 | -400.90 |
| ADediting_938062 | ENST00000478230.5 | chr20_45838292_+ | 295 | -385.80 | -383.30 | -400.90 |
| ADediting_938063 | ENST00000478230.5 | chr20_45838317_+ | 320 | -386.30 | -383.30 | -400.90 |
| ADediting_938064 | ENST00000478230.5 | chr20_45838318_+ | 321 | -386.40 | -383.30 | -400.90 |
| ADediting_938065 | ENST00000478230.5 | chr20_45838335_+ | 338 | -386.80 | -383.30 | -400.90 |
| ADediting_938066 | ENST00000478230.5 | chr20_45838344_+ | 347 | -385.60 | -383.30 | -400.90 |
| ADediting_938067 | ENST00000478230.5 | chr20_45838345_+ | 348 | -385.10 | -383.30 | -400.90 |
| ADediting_938068 | ENST00000478230.5 | chr20_45838348_+ | 351 | -384.40 | -383.30 | -400.90 |
| ADediting_938069 | ENST00000478230.5 | chr20_45838357_+ | 360 | -384.80 | -383.30 | -400.90 |
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Relation with ADAR for SNX21 |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | ADediting_938026 | chr20_45836470_+ | 0.643426768452177 | 0.026393731862888 | 0.164569331263632 | -0.0791349696953093 | 1.59664230609622e-17 | 0.458543336480868 |
| DLPFC | ADediting_938027 | chr20_45836471_+ | 0.619474601580477 | 0.0283134311017172 | 0.349519612292662 | -0.0533116215365416 | 4.99749348231851e-13 | 0.395148303809492 |
| DLPFC | ADediting_938029 | chr20_45836527_+ | 0.158648605524574 | -0.0802566908143391 | 0.00248716351427847 | -0.171223914037641 | 8.37851162351347e-11 | 0.35796722221214 |
| TCX | ADediting_938103 | chr20_45838917_+ | 0.706786069323082 | -0.0309663197130455 | 0.00903747841582153 | -0.212494844754817 | 8.26086636309089e-05 | 0.315806857996264 |
| TCX | ADediting_938111 | chr20_45838987_+ | 0.385687449506991 | -0.0713346557746217 | 0.00541868470025825 | -0.226014890216018 | 2.38693025322499e-06 | 0.37422725120818 |
| TCX | ADediting_938116 | chr20_45839023_+ | 0.838025102203755 | -0.016830456455329 | 0.0165512020391268 | -0.195420050745867 | 6.13555040944007e-06 | 0.359763610962354 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 7.53274852596896e-39 | 0.651612386138959 | 7.68767234812151e-32 | 0.601128689944605 | 6.89670791025346e-38 | 0.645214740154255 |
| AC | 4.85435830810966e-21 | 0.548518429521723 | 1.87784141297205e-22 | 0.564637955312023 | 3.51377194217558e-14 | 0.45503587797771 |
| PCC | 1.11149179743766e-25 | 0.66430835025504 | 1.54288522242568e-29 | 0.700817455207469 | 3.07176360017092e-05 | 0.296719222731508 |
| CER | 1.22369333920995e-37 | 0.819681464818545 | 4.45677893701759e-19 | 0.645929306338888 | 0.0425681818789597 | 0.165818222046892 |
| TCX | 1.36957761105478e-33 | 0.792457148006109 | 2.91160158311603e-23 | 0.698464894604759 | 0.436617870050103 | 0.0639868203822468 |
| FP | 1.3575693173011e-17 | 0.583026562033634 | 3.55797913880267e-16 | 0.561466658144221 | 3.03157348115265e-09 | 0.426094852391692 |
| IFG | 7.27478755945494e-07 | 0.814372886223435 | 7.93565535758166e-08 | 0.849303580079642 | 0.0545482586096263 | 0.389103658043423 |
| PG | 0.000432345471995977 | 0.25548900353488 | 0.000190118856765476 | 0.270338400596799 | 2.07971584017798e-05 | 0.306594274761987 |
| STG | 3.57146275569187e-10 | 0.618677014558649 | 5.64117372961787e-06 | 0.472627544307015 | 4.35098206099636e-08 | 0.554781249417505 |
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Relation with AD stages for SNX21 |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| TCX | ADediting_938097 | chr20_45838660_+ | 0.000739270731626882 | 0.322776693642999 |
| TCX | ADediting_938111 | chr20_45838987_+ | 0.000402805752736053 | 0.33752361053252 |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
| TCX | 0.000100474148996651 | 0.368745768373942 |
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RelatedDrugs for SNX21 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SNX21 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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