ADeditome: functional annotation of RNA A-to-I editing in AD

Gene summary for CDS2

Gene summary

Gene information	Gene symbol	CDS2
	Gene ID	8760
	Gene name	CDP-diacylglycerol synthase 2
	Synonyms	-
	Cytomap	20p12.3
	Type of gene	protein-coding
	Description	phosphatidate cytidylyltransferase 2CDP-DAG synthase 2CDP-DG synthase 2CDP-DG synthetase 2CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2CDP-diglyceride diphosphorylase 2CDP-diglyceride pyrophosphorylase 2CDP-diglyceride synthase
	Modification date	20200327
	UniProtAcc	O75420, O95674,
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for CDS2

RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).

RNA editing frequencies across three data sets.

The number of RNA A-to-I editing events in different types of transcripts (# event, percentage).

RNA A-to-I editing events in AD.

ADediting_945466(5128524, +), ADediting_945467(5128525, +), ADediting_945468(5128551, +), ADediting_945469(5129338, +), ADediting_945470(5129346, +), ADediting_945471(5129351, +), ADediting_945472(5129406, +), ADediting_945473(5129416, +), ADediting_945474(5129422, +), ADediting_945475(5129529, +), ADediting_945476(5129572, +), ADediting_945477(5129608, +), ADediting_945478(5129622, +), ADediting_945479(5129662, +), ADediting_945480(5129670, +), ADediting_945481(5129671, +), ADediting_945482(5129704, +), ADediting_945483(5129840, +), ADediting_945484(5129841, +), ADediting_945485(5129848, +), ADediting_945486(5130029, +), ADediting_945487(5130034, +), ADediting_945488(5130076, +), ADediting_945489(5130112, +), ADediting_945490(5130218, +), ADediting_945491(5130522, +), ADediting_945492(5130552, +), ADediting_945493(5130562, +), ADediting_945494(5130567, +), ADediting_945495(5130663, +), ADediting_945496(5130672, +), ADediting_945497(5130676, +), ADediting_945498(5130689, +), ADediting_945499(5130715, +), ADediting_945500(5130728, +), ADediting_945501(5130791, +), ADediting_945502(5130823, +), ADediting_945503(5130836, +), ADediting_945504(5130837, +), ADediting_945505(5130880, +), ADediting_945506(5130919, +), ADediting_945507(5130928, +), ADediting_945508(5130970, +), ADediting_945509(5130980, +), ADediting_945510(5130999, +), ADediting_945511(5131013, +), ADediting_945512(5131014, +), ADediting_945513(5131021, +), ADediting_945514(5132985, +), ADediting_945515(5133050, +), ADediting_945516(5133064, +), ADediting_945517(5133095, +), ADediting_945518(5133116, +), ADediting_945519(5133283, +), ADediting_945520(5133589, +), ADediting_945521(5133597, +), ADediting_945522(5133602, +), ADediting_945523(5133667, +), ADediting_945524(5133725, +), ADediting_945525(5133787, +), ADediting_945526(5133799, +), ADediting_945527(5134577, +), ADediting_945528(5134590, +), ADediting_945529(5137448, +), ADediting_945530(5137478, +), ADediting_945531(5137504, +), ADediting_945532(5137505, +), ADediting_945533(5137512, +), ADediting_945534(5137517, +), ADediting_945535(5137852, +), ADediting_945536(5139086, +), ADediting_945537(5139092, +), ADediting_945538(5139108, +), ADediting_945539(5139109, +), ADediting_945540(5139143, +), ADediting_945541(5139146, +), ADediting_945542(5139183, +), ADediting_945543(5139189, +), ADediting_945544(5139195, +), ADediting_945545(5139208, +), ADediting_945546(5139215, +), ADediting_945547(5139221, +), ADediting_945548(5139222, +), ADediting_945549(5139279, +), ADediting_945550(5139337, +), ADediting_945554(5142112, +), ADediting_945555(5142113, +), ADediting_945556(5142118, +), ADediting_945559(5142276, +), ADediting_945560(5142291, +), ADediting_945561(5142296, +), ADediting_945562(5142300, +), ADediting_945563(5142326, +), ADediting_945564(5142388, +), ADediting_945565(5142397, +), ADediting_945567(5142886, +), ADediting_945568(5142942, +), ADediting_945569(5142989, +), ADediting_945570(5143826, +), ADediting_945571(5143842, +), ADediting_945572(5143948, +), ADediting_945573(5144012, +), ADediting_945574(5144041, +), ADediting_945604(5151661, +), ADediting_945605(5151858, +), ADediting_945606(5151865, +), ADediting_945607(5151869, +), ADediting_945608(5151894, +), ADediting_945609(5151904, +), ADediting_945610(5151910, +), ADediting_945611(5151944, +), ADediting_945612(5151945, +), ADediting_945613(5151978, +), ADediting_945614(5152016, +), ADediting_945615(5152487, +), ADediting_945616(5152492, +), ADediting_945617(5152508, +), ADediting_945618(5152509, +), ADediting_945619(5152522, +), ADediting_945620(5152532, +), ADediting_945621(5152546, +), ADediting_945622(5152556, +), ADediting_945623(5152558, +), ADediting_945624(5152623, +), ADediting_945625(5152632, +), ADediting_945626(5152649, +), ADediting_945627(5152664, +), ADediting_945628(5152684, +), ADediting_945629(5152692, +), ADediting_945630(5152693, +), ADediting_945631(5154672, +), ADediting_945632(5154679, +), ADediting_945633(5154706, +), ADediting_945634(5154760, +), ADediting_945635(5154828, +), ADediting_945636(5154845, +), ADediting_945637(5154869, +), ADediting_945638(5154882, +), ADediting_945639(5154883, +), ADediting_945660(5163110, +), ADediting_945661(5163134, +), ADediting_945693(5163529, +), ADediting_945695(5163855, +), ADediting_945696(5164000, +), ADediting_945724(5165600, +), ADediting_945768(5168146, +), ADediting_945789(5168288, +), ADediting_945793(5168294, +), ADediting_945797(5168336, +), ADediting_945803(5168365, +), ADediting_946112(5179261, +), ADediting_946114(5194877, +), ADediting_946115(5194878, +), ADediting_946116(5194893, +), ADediting_946117(5194900, +), ADediting_946118(5194911, +), ADediting_946119(5195158, +), ADediting_946120(5195159, +), ADediting_946121(5195166, +), ADediting_1567515(5129703, +), ADediting_1567516(5129853, +), ADediting_1567517(5130077, +), ADediting_1567518(5133321, +), ADediting_1567519(5133329, +), ADediting_1641189(5130624, +), ADediting_1641190(5133120, +), ADediting_1641191(5133269, +), ADediting_1641192(5133326, +), ADediting_1641193(5133331, +), ADediting_1641194(5133394, +), ADediting_1641195(5137373, +), ADediting_1641196(5137382, +), ADediting_1641197(5137424, +), ADediting_1641198(5137739, +), ADediting_1641199(5138542, +), ADediting_1641200(5138585, +), ADediting_1641201(5138586, +), ADediting_1641202(5139087, +), ADediting_1641203(5139142, +), ADediting_1641204(5139171, +), ADediting_1641205(5139191, +), ADediting_1641206(5142218, +), ADediting_1641207(5142260, +), ADediting_1641208(5142271, +), ADediting_1641209(5142327, +), ADediting_1641210(5143030, +), ADediting_1641211(5143033, +), ADediting_1641212(5143839, +), ADediting_1641213(5143844, +), ADediting_1641214(5143845, +), ADediting_1641215(5143930, +), ADediting_1641216(5143931, +), ADediting_1641217(5143954, +), ADediting_1641218(5143974, +), ADediting_1641219(5151488, +), ADediting_1641220(5151545, +), ADediting_1641221(5152622, +), ADediting_1641242(5195172, +),

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RNA editing positional annotations for CDS2 using Annovar

Protein coding RNA editing(s).

ADeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

ADeditome ID	Position	Variant type
ADediting_945466	chr20_5128524_+	intronic
ADediting_945467	chr20_5128525_+	intronic
ADediting_945468	chr20_5128551_+	intronic
ADediting_945469	chr20_5129338_+	intronic
ADediting_945470	chr20_5129346_+	intronic
ADediting_945471	chr20_5129351_+	intronic
ADediting_945472	chr20_5129406_+	intronic
ADediting_945473	chr20_5129416_+	intronic
ADediting_945474	chr20_5129422_+	intronic
ADediting_945475	chr20_5129529_+	intronic
ADediting_945476	chr20_5129572_+	intronic
ADediting_945477	chr20_5129608_+	intronic
ADediting_945478	chr20_5129622_+	intronic
ADediting_945479	chr20_5129662_+	intronic
ADediting_945480	chr20_5129670_+	intronic
ADediting_945481	chr20_5129671_+	intronic
ADediting_945482	chr20_5129704_+	intronic
ADediting_945483	chr20_5129840_+	intronic
ADediting_945484	chr20_5129841_+	intronic
ADediting_945485	chr20_5129848_+	intronic
ADediting_945486	chr20_5130029_+	intronic
ADediting_945487	chr20_5130034_+	intronic
ADediting_945488	chr20_5130076_+	intronic
ADediting_945489	chr20_5130112_+	intronic
ADediting_945490	chr20_5130218_+	intronic
ADediting_945491	chr20_5130522_+	intronic
ADediting_945492	chr20_5130552_+	intronic
ADediting_945493	chr20_5130562_+	intronic
ADediting_945494	chr20_5130567_+	intronic
ADediting_945495	chr20_5130663_+	intronic
ADediting_945496	chr20_5130672_+	intronic
ADediting_945497	chr20_5130676_+	intronic
ADediting_945498	chr20_5130689_+	intronic
ADediting_945499	chr20_5130715_+	intronic
ADediting_945500	chr20_5130728_+	intronic
ADediting_945501	chr20_5130791_+	intronic
ADediting_945502	chr20_5130823_+	intronic
ADediting_945503	chr20_5130836_+	intronic
ADediting_945504	chr20_5130837_+	intronic
ADediting_945505	chr20_5130880_+	intronic
ADediting_945506	chr20_5130919_+	intronic
ADediting_945507	chr20_5130928_+	intronic
ADediting_945508	chr20_5130970_+	intronic
ADediting_945509	chr20_5130980_+	intronic
ADediting_945510	chr20_5130999_+	intronic
ADediting_945511	chr20_5131013_+	intronic
ADediting_945512	chr20_5131014_+	intronic
ADediting_945513	chr20_5131021_+	intronic
ADediting_945514	chr20_5132985_+	intronic
ADediting_945515	chr20_5133050_+	intronic
ADediting_945516	chr20_5133064_+	intronic
ADediting_945517	chr20_5133095_+	intronic
ADediting_945518	chr20_5133116_+	intronic
ADediting_945519	chr20_5133283_+	intronic
ADediting_945520	chr20_5133589_+	intronic
ADediting_945521	chr20_5133597_+	intronic
ADediting_945522	chr20_5133602_+	intronic
ADediting_945523	chr20_5133667_+	intronic
ADediting_945524	chr20_5133725_+	intronic
ADediting_945525	chr20_5133787_+	intronic
ADediting_945526	chr20_5133799_+	intronic
ADediting_945527	chr20_5134577_+	intronic
ADediting_945528	chr20_5134590_+	intronic
ADediting_945529	chr20_5137448_+	intronic
ADediting_945530	chr20_5137478_+	intronic
ADediting_945531	chr20_5137504_+	intronic
ADediting_945532	chr20_5137505_+	intronic
ADediting_945533	chr20_5137512_+	intronic
ADediting_945534	chr20_5137517_+	intronic
ADediting_945535	chr20_5137852_+	intronic
ADediting_945536	chr20_5139086_+	intronic
ADediting_945537	chr20_5139092_+	intronic
ADediting_945538	chr20_5139108_+	intronic
ADediting_945539	chr20_5139109_+	intronic
ADediting_945540	chr20_5139143_+	intronic
ADediting_945541	chr20_5139146_+	intronic
ADediting_945542	chr20_5139183_+	intronic
ADediting_945543	chr20_5139189_+	intronic
ADediting_945544	chr20_5139195_+	intronic
ADediting_945545	chr20_5139208_+	intronic
ADediting_945546	chr20_5139215_+	intronic
ADediting_945547	chr20_5139221_+	intronic
ADediting_945548	chr20_5139222_+	intronic
ADediting_945549	chr20_5139279_+	intronic
ADediting_945550	chr20_5139337_+	intronic
ADediting_945554	chr20_5142112_+	intronic
ADediting_945555	chr20_5142113_+	intronic
ADediting_945556	chr20_5142118_+	intronic
ADediting_945559	chr20_5142276_+	intronic
ADediting_945560	chr20_5142291_+	intronic
ADediting_945561	chr20_5142296_+	intronic
ADediting_945562	chr20_5142300_+	intronic
ADediting_945563	chr20_5142326_+	intronic
ADediting_945564	chr20_5142388_+	intronic
ADediting_945565	chr20_5142397_+	intronic
ADediting_945567	chr20_5142886_+	intronic
ADediting_945568	chr20_5142942_+	intronic
ADediting_945569	chr20_5142989_+	intronic
ADediting_945570	chr20_5143826_+	intronic
ADediting_945571	chr20_5143842_+	intronic
ADediting_945572	chr20_5143948_+	intronic
ADediting_945573	chr20_5144012_+	intronic
ADediting_945574	chr20_5144041_+	intronic
ADediting_945604	chr20_5151661_+	intronic
ADediting_945605	chr20_5151858_+	intronic
ADediting_945606	chr20_5151865_+	intronic
ADediting_945607	chr20_5151869_+	intronic
ADediting_945608	chr20_5151894_+	intronic
ADediting_945609	chr20_5151904_+	intronic
ADediting_945610	chr20_5151910_+	intronic
ADediting_945611	chr20_5151944_+	intronic
ADediting_945612	chr20_5151945_+	intronic
ADediting_945613	chr20_5151978_+	intronic
ADediting_945614	chr20_5152016_+	intronic
ADediting_945615	chr20_5152487_+	intronic
ADediting_945616	chr20_5152492_+	intronic
ADediting_945617	chr20_5152508_+	intronic
ADediting_945618	chr20_5152509_+	intronic
ADediting_945619	chr20_5152522_+	intronic
ADediting_945620	chr20_5152532_+	intronic
ADediting_945621	chr20_5152546_+	intronic
ADediting_945622	chr20_5152556_+	intronic
ADediting_945623	chr20_5152558_+	intronic
ADediting_945624	chr20_5152623_+	intronic
ADediting_945625	chr20_5152632_+	intronic
ADediting_945626	chr20_5152649_+	intronic
ADediting_945627	chr20_5152664_+	intronic
ADediting_945628	chr20_5152684_+	intronic
ADediting_945629	chr20_5152692_+	intronic
ADediting_945630	chr20_5152693_+	intronic
ADediting_945631	chr20_5154672_+	intronic
ADediting_945632	chr20_5154679_+	intronic
ADediting_945633	chr20_5154706_+	intronic
ADediting_945634	chr20_5154760_+	intronic
ADediting_945635	chr20_5154828_+	intronic
ADediting_945636	chr20_5154845_+	intronic
ADediting_945637	chr20_5154869_+	intronic
ADediting_945638	chr20_5154882_+	intronic
ADediting_945639	chr20_5154883_+	intronic
ADediting_945660	chr20_5163110_+	intronic
ADediting_945661	chr20_5163134_+	intronic
ADediting_945693	chr20_5163529_+	intronic
ADediting_945695	chr20_5163855_+	intronic
ADediting_945696	chr20_5164000_+	intronic
ADediting_945724	chr20_5165600_+	intronic
ADediting_945768	chr20_5168146_+	intronic
ADediting_945789	chr20_5168288_+	intronic
ADediting_945793	chr20_5168294_+	intronic
ADediting_945797	chr20_5168336_+	intronic
ADediting_945803	chr20_5168365_+	intronic
ADediting_946112	chr20_5179261_+	intronic
ADediting_946114	chr20_5194877_+	UTR3
ADediting_946115	chr20_5194878_+	UTR3
ADediting_946116	chr20_5194893_+	UTR3
ADediting_946117	chr20_5194900_+	UTR3
ADediting_946118	chr20_5194911_+	UTR3
ADediting_946119	chr20_5195158_+	UTR3
ADediting_946120	chr20_5195159_+	UTR3
ADediting_946121	chr20_5195166_+	UTR3
ADediting_1567515	chr20_5129703_+	intronic
ADediting_1567516	chr20_5129853_+	intronic
ADediting_1567517	chr20_5130077_+	intronic
ADediting_1567518	chr20_5133321_+	intronic
ADediting_1567519	chr20_5133329_+	intronic
ADediting_1641189	chr20_5130624_+	intronic
ADediting_1641190	chr20_5133120_+	intronic
ADediting_1641191	chr20_5133269_+	intronic
ADediting_1641192	chr20_5133326_+	intronic
ADediting_1641193	chr20_5133331_+	intronic
ADediting_1641194	chr20_5133394_+	intronic
ADediting_1641195	chr20_5137373_+	intronic
ADediting_1641196	chr20_5137382_+	intronic
ADediting_1641197	chr20_5137424_+	intronic
ADediting_1641198	chr20_5137739_+	intronic
ADediting_1641199	chr20_5138542_+	intronic
ADediting_1641200	chr20_5138585_+	intronic
ADediting_1641201	chr20_5138586_+	intronic
ADediting_1641202	chr20_5139087_+	intronic
ADediting_1641203	chr20_5139142_+	intronic
ADediting_1641204	chr20_5139171_+	intronic
ADediting_1641205	chr20_5139191_+	intronic
ADediting_1641206	chr20_5142218_+	intronic
ADediting_1641207	chr20_5142260_+	intronic
ADediting_1641208	chr20_5142271_+	intronic
ADediting_1641209	chr20_5142327_+	intronic
ADediting_1641210	chr20_5143030_+	intronic
ADediting_1641211	chr20_5143033_+	intronic
ADediting_1641212	chr20_5143839_+	intronic
ADediting_1641213	chr20_5143844_+	intronic
ADediting_1641214	chr20_5143845_+	intronic
ADediting_1641215	chr20_5143930_+	intronic
ADediting_1641216	chr20_5143931_+	intronic
ADediting_1641217	chr20_5143954_+	intronic
ADediting_1641218	chr20_5143974_+	intronic
ADediting_1641219	chr20_5151488_+	intronic
ADediting_1641220	chr20_5151545_+	intronic
ADediting_1641221	chr20_5152622_+	intronic
ADediting_1641242	chr20_5195172_+	UTR3

Repat-regional RNA editing(s).

ADeditome ID	Position	Repeat family	Repeat sub family	Repeat name
ADediting_945466	chr20_5128524_+	SINE	Alu	Name=FLAM_A
ADediting_945467	chr20_5128525_+	SINE	Alu	Name=FLAM_A
ADediting_945468	chr20_5128551_+	SINE	Alu	Name=FLAM_A
ADediting_945469	chr20_5129338_+	SINE	Alu	Name=AluSx3
ADediting_945470	chr20_5129346_+	SINE	Alu	Name=AluSx3
ADediting_945471	chr20_5129351_+	SINE	Alu	Name=AluSx3
ADediting_945472	chr20_5129406_+	SINE	Alu	Name=AluSx3
ADediting_945473	chr20_5129416_+	SINE	Alu	Name=AluSx3
ADediting_945474	chr20_5129422_+	SINE	Alu	Name=AluSx3
ADediting_945475	chr20_5129529_+	SINE	Alu	Name=AluSp
ADediting_945476	chr20_5129572_+	SINE	Alu	Name=AluSp
ADediting_945477	chr20_5129608_+	SINE	Alu	Name=AluSp
ADediting_945478	chr20_5129622_+	SINE	Alu	Name=AluSp
ADediting_945479	chr20_5129662_+	SINE	Alu	Name=AluSp
ADediting_945480	chr20_5129670_+	SINE	Alu	Name=AluSp
ADediting_945481	chr20_5129671_+	SINE	Alu	Name=AluSp
ADediting_945482	chr20_5129704_+	SINE	Alu	Name=AluSp
ADediting_945483	chr20_5129840_+	SINE	Alu	Name=AluSx3
ADediting_945484	chr20_5129841_+	SINE	Alu	Name=AluSx3
ADediting_945485	chr20_5129848_+	SINE	Alu	Name=AluSx3
ADediting_945486	chr20_5130029_+	SINE	Alu	Name=AluSq2
ADediting_945487	chr20_5130034_+	SINE	Alu	Name=AluSq2
ADediting_945488	chr20_5130076_+	SINE	Alu	Name=AluSq2
ADediting_945489	chr20_5130112_+	SINE	Alu	Name=AluSq2
ADediting_945490	chr20_5130218_+	SINE	Alu	Name=AluSq2
ADediting_945491	chr20_5130522_+	SINE	Alu	Name=AluSp
ADediting_945492	chr20_5130552_+	SINE	Alu	Name=AluSp
ADediting_945493	chr20_5130562_+	SINE	Alu	Name=AluSp
ADediting_945494	chr20_5130567_+	SINE	Alu	Name=AluSp
ADediting_945495	chr20_5130663_+	SINE	Alu	Name=AluSp
ADediting_945496	chr20_5130672_+	SINE	Alu	Name=AluSp
ADediting_945497	chr20_5130676_+	SINE	Alu	Name=AluSp
ADediting_945498	chr20_5130689_+	SINE	Alu	Name=AluSp
ADediting_945499	chr20_5130715_+	SINE	Alu	Name=AluSp
ADediting_945500	chr20_5130728_+	SINE	Alu	Name=AluSp
ADediting_945501	chr20_5130791_+	SINE	Alu	Name=AluSp
ADediting_945502	chr20_5130823_+	SINE	Alu	Name=AluY
ADediting_945503	chr20_5130836_+	SINE	Alu	Name=AluY
ADediting_945504	chr20_5130837_+	SINE	Alu	Name=AluY
ADediting_945505	chr20_5130880_+	SINE	Alu	Name=AluY
ADediting_945506	chr20_5130919_+	SINE	Alu	Name=AluY
ADediting_945507	chr20_5130928_+	SINE	Alu	Name=AluY
ADediting_945508	chr20_5130970_+	SINE	Alu	Name=AluY
ADediting_945509	chr20_5130980_+	SINE	Alu	Name=AluY
ADediting_945510	chr20_5130999_+	SINE	Alu	Name=AluY
ADediting_945511	chr20_5131013_+	SINE	Alu	Name=AluY
ADediting_945512	chr20_5131014_+	SINE	Alu	Name=AluY
ADediting_945513	chr20_5131021_+	SINE	Alu	Name=AluY
ADediting_945514	chr20_5132985_+	SINE	Alu	Name=AluY
ADediting_945515	chr20_5133050_+	SINE	Alu	Name=AluY
ADediting_945516	chr20_5133064_+	SINE	Alu	Name=AluY
ADediting_945517	chr20_5133095_+	SINE	Alu	Name=AluY
ADediting_945518	chr20_5133116_+	SINE	Alu	Name=AluY
ADediting_945519	chr20_5133283_+	SINE	Alu	Name=AluJo
ADediting_945520	chr20_5133589_+	SINE	Alu	Name=AluSp
ADediting_945521	chr20_5133597_+	SINE	Alu	Name=AluSp
ADediting_945522	chr20_5133602_+	SINE	Alu	Name=AluSp
ADediting_945523	chr20_5133667_+	SINE	Alu	Name=AluSp
ADediting_945524	chr20_5133725_+	SINE	Alu	Name=AluSp
ADediting_945525	chr20_5133787_+	SINE	Alu	Name=AluSp
ADediting_945526	chr20_5133799_+	SINE	Alu	Name=AluSp
ADediting_945527	chr20_5134577_+	SINE	Alu	Name=AluSq2
ADediting_945528	chr20_5134590_+	SINE	Alu	Name=AluSq2
ADediting_945529	chr20_5137448_+	SINE	Alu	Name=AluSz
ADediting_945530	chr20_5137478_+	SINE	Alu	Name=AluSz
ADediting_945531	chr20_5137504_+	SINE	Alu	Name=AluSz
ADediting_945532	chr20_5137505_+	SINE	Alu	Name=AluSz
ADediting_945533	chr20_5137512_+	SINE	Alu	Name=AluSz
ADediting_945534	chr20_5137517_+	SINE	Alu	Name=AluSz
ADediting_945535	chr20_5137852_+	SINE	Alu	Name=AluY
ADediting_945536	chr20_5139086_+	SINE	Alu	Name=AluSz
ADediting_945537	chr20_5139092_+	SINE	Alu	Name=AluSz
ADediting_945538	chr20_5139108_+	SINE	Alu	Name=AluSz
ADediting_945539	chr20_5139109_+	SINE	Alu	Name=AluSz
ADediting_945540	chr20_5139143_+	SINE	Alu	Name=AluSz
ADediting_945541	chr20_5139146_+	SINE	Alu	Name=AluSz
ADediting_945542	chr20_5139183_+	SINE	Alu	Name=AluSz
ADediting_945543	chr20_5139189_+	SINE	Alu	Name=AluSz
ADediting_945544	chr20_5139195_+	SINE	Alu	Name=AluSz
ADediting_945545	chr20_5139208_+	SINE	Alu	Name=AluSz
ADediting_945546	chr20_5139215_+	SINE	Alu	Name=AluSz
ADediting_945547	chr20_5139221_+	SINE	Alu	Name=AluSz
ADediting_945548	chr20_5139222_+	SINE	Alu	Name=AluSz
ADediting_945549	chr20_5139279_+	SINE	Alu	Name=AluSz
ADediting_945550	chr20_5139337_+	SINE	Alu	Name=AluSz
ADediting_945554	chr20_5142112_+	SINE	Alu	Name=FLAM_C
ADediting_945555	chr20_5142113_+	SINE	Alu	Name=FLAM_C
ADediting_945556	chr20_5142118_+	SINE	Alu	Name=FLAM_C
ADediting_945559	chr20_5142276_+	SINE	Alu	Name=AluSz
ADediting_945560	chr20_5142291_+	SINE	Alu	Name=AluSz
ADediting_945561	chr20_5142296_+	SINE	Alu	Name=AluSz
ADediting_945562	chr20_5142300_+	SINE	Alu	Name=AluSz
ADediting_945563	chr20_5142326_+	SINE	Alu	Name=AluSz
ADediting_945564	chr20_5142388_+	SINE	Alu	Name=AluSz
ADediting_945565	chr20_5142397_+	SINE	Alu	Name=AluSz
ADediting_945567	chr20_5142886_+	SINE	Alu	Name=AluJo
ADediting_945568	chr20_5142942_+	SINE	Alu	Name=AluJo
ADediting_945569	chr20_5142989_+	SINE	Alu	Name=AluJo
ADediting_945570	chr20_5143826_+	SINE	Alu	Name=AluSz6
ADediting_945571	chr20_5143842_+	SINE	Alu	Name=AluSz6
ADediting_945572	chr20_5143948_+	SINE	Alu	Name=AluSz6
ADediting_945573	chr20_5144012_+	SINE	Alu	Name=AluSz6
ADediting_945574	chr20_5144041_+	SINE	Alu	Name=AluSz6
ADediting_945604	chr20_5151661_+	SINE	Alu	Name=AluJr
ADediting_945605	chr20_5151858_+	SINE	Alu	Name=AluSp
ADediting_945606	chr20_5151865_+	SINE	Alu	Name=AluSp
ADediting_945607	chr20_5151869_+	SINE	Alu	Name=AluSp
ADediting_945608	chr20_5151894_+	SINE	Alu	Name=AluSp
ADediting_945609	chr20_5151904_+	SINE	Alu	Name=AluSp
ADediting_945610	chr20_5151910_+	SINE	Alu	Name=AluSp
ADediting_945611	chr20_5151944_+	SINE	Alu	Name=AluSp
ADediting_945612	chr20_5151945_+	SINE	Alu	Name=AluSp
ADediting_945613	chr20_5151978_+	SINE	Alu	Name=AluSp
ADediting_945614	chr20_5152016_+	SINE	Alu	Name=AluSp
ADediting_945615	chr20_5152487_+	SINE	Alu	Name=AluSz
ADediting_945616	chr20_5152492_+	SINE	Alu	Name=AluSz
ADediting_945617	chr20_5152508_+	SINE	Alu	Name=AluSz
ADediting_945618	chr20_5152509_+	SINE	Alu	Name=AluSz
ADediting_945619	chr20_5152522_+	SINE	Alu	Name=AluSz
ADediting_945620	chr20_5152532_+	SINE	Alu	Name=AluSz
ADediting_945621	chr20_5152546_+	SINE	Alu	Name=AluSz
ADediting_945622	chr20_5152556_+	SINE	Alu	Name=AluSz
ADediting_945623	chr20_5152558_+	SINE	Alu	Name=AluSz
ADediting_945624	chr20_5152623_+	SINE	Alu	Name=AluSz
ADediting_945625	chr20_5152632_+	SINE	Alu	Name=AluSz
ADediting_945626	chr20_5152649_+	SINE	Alu	Name=AluSz
ADediting_945627	chr20_5152664_+	SINE	Alu	Name=AluSz
ADediting_945628	chr20_5152684_+	SINE	Alu	Name=AluSz
ADediting_945629	chr20_5152692_+	SINE	Alu	Name=AluSz
ADediting_945630	chr20_5152693_+	SINE	Alu	Name=AluSz
ADediting_945631	chr20_5154672_+	SINE	Alu	Name=AluJb
ADediting_945632	chr20_5154679_+	SINE	Alu	Name=AluJb
ADediting_945633	chr20_5154706_+	SINE	Alu	Name=AluJb
ADediting_945634	chr20_5154760_+	SINE	Alu	Name=AluJb
ADediting_945635	chr20_5154828_+	SINE	Alu	Name=AluJb
ADediting_945636	chr20_5154845_+	SINE	Alu	Name=AluJb
ADediting_945637	chr20_5154869_+	SINE	Alu	Name=AluJb
ADediting_945638	chr20_5154882_+	SINE	Alu	Name=AluJb
ADediting_945639	chr20_5154883_+	SINE	Alu	Name=AluJb
ADediting_945660	chr20_5163110_+	SINE	Alu	Name=AluJr
ADediting_945661	chr20_5163134_+	SINE	Alu	Name=AluJr
ADediting_945693	chr20_5163529_+	SINE	Alu	Name=AluSp
ADediting_945695	chr20_5163855_+	SINE	Alu	Name=AluSx1
ADediting_945696	chr20_5164000_+	SINE	Alu	Name=AluSx1
ADediting_945724	chr20_5165600_+	SINE	Alu	Name=AluJb
ADediting_945768	chr20_5168146_+	SINE	Alu	Name=AluSx1
ADediting_945789	chr20_5168288_+	SINE	Alu	Name=AluSx1
ADediting_945793	chr20_5168294_+	SINE	Alu	Name=AluSx1
ADediting_945797	chr20_5168336_+	SINE	Alu	Name=AluSx1
ADediting_945803	chr20_5168365_+	SINE	Alu	Name=AluSx1
ADediting_946112	chr20_5179261_+	SINE	Alu	Name=AluSx1
ADediting_946114	chr20_5194877_+	SINE	MIR	Name=MIRb
ADediting_946115	chr20_5194878_+	SINE	MIR	Name=MIRb
ADediting_946116	chr20_5194893_+	SINE	MIR	Name=MIRb
ADediting_946117	chr20_5194900_+	SINE	MIR	Name=MIRb
ADediting_946118	chr20_5194911_+	SINE	MIR	Name=MIRb
ADediting_946119	chr20_5195158_+	SINE	MIR	Name=MIRb
ADediting_946120	chr20_5195159_+	SINE	MIR	Name=MIRb
ADediting_946121	chr20_5195166_+	SINE	MIR	Name=MIRb
ADediting_1567515	chr20_5129703_+	SINE	Alu	Name=AluSp
ADediting_1567516	chr20_5129853_+	SINE	Alu	Name=AluSx3
ADediting_1567517	chr20_5130077_+	SINE	Alu	Name=AluSq2
ADediting_1567518	chr20_5133321_+	SINE	Alu	Name=AluJo
ADediting_1567519	chr20_5133329_+	SINE	Alu	Name=AluJo
ADediting_1641189	chr20_5130624_+	SINE	Alu	Name=AluSp
ADediting_1641190	chr20_5133120_+	SINE	Alu	Name=AluY
ADediting_1641191	chr20_5133269_+	SINE	Alu	Name=AluJo
ADediting_1641192	chr20_5133326_+	SINE	Alu	Name=AluJo
ADediting_1641193	chr20_5133331_+	SINE	Alu	Name=AluJo
ADediting_1641194	chr20_5133394_+	SINE	Alu	Name=AluJo
ADediting_1641195	chr20_5137373_+	SINE	Alu	Name=AluSz
ADediting_1641196	chr20_5137382_+	SINE	Alu	Name=AluSz
ADediting_1641197	chr20_5137424_+	SINE	Alu	Name=AluSz
ADediting_1641198	chr20_5137739_+	SINE	Alu	Name=AluJo
ADediting_1641199	chr20_5138542_+	SINE	Alu	Name=AluSq2
ADediting_1641200	chr20_5138585_+	SINE	Alu	Name=AluSq2
ADediting_1641201	chr20_5138586_+	SINE	Alu	Name=AluSq2
ADediting_1641202	chr20_5139087_+	SINE	Alu	Name=AluSz
ADediting_1641203	chr20_5139142_+	SINE	Alu	Name=AluSz
ADediting_1641204	chr20_5139171_+	SINE	Alu	Name=AluSz
ADediting_1641205	chr20_5139191_+	SINE	Alu	Name=AluSz
ADediting_1641206	chr20_5142218_+	SINE	Alu	Name=AluSz
ADediting_1641207	chr20_5142260_+	SINE	Alu	Name=AluSz
ADediting_1641208	chr20_5142271_+	SINE	Alu	Name=AluSz
ADediting_1641209	chr20_5142327_+	SINE	Alu	Name=AluSz
ADediting_1641210	chr20_5143030_+	SINE	Alu	Name=AluJo
ADediting_1641211	chr20_5143033_+	SINE	Alu	Name=AluJo
ADediting_1641212	chr20_5143839_+	SINE	Alu	Name=AluSz6
ADediting_1641213	chr20_5143844_+	SINE	Alu	Name=AluSz6
ADediting_1641214	chr20_5143845_+	SINE	Alu	Name=AluSz6
ADediting_1641215	chr20_5143930_+	SINE	Alu	Name=AluSz6
ADediting_1641216	chr20_5143931_+	SINE	Alu	Name=AluSz6
ADediting_1641217	chr20_5143954_+	SINE	Alu	Name=AluSz6
ADediting_1641218	chr20_5143974_+	SINE	Alu	Name=AluSz6
ADediting_1641219	chr20_5151488_+	SINE	Alu	Name=FLAM_A
ADediting_1641220	chr20_5151545_+	SINE	Alu	Name=FLAM_A
ADediting_1641221	chr20_5152622_+	SINE	Alu	Name=AluSz
ADediting_1641242	chr20_5195172_+	SINE	MIR	Name=MIRb

Top

RNA A-to-I editing events in the alternative splicing sites for CDS2

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

ADeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for CDS2

Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

- Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

ADeditome ID

Chr

Positoing

Skipped exon

ENSG

ENSTs

Top

Protein coding region RNA A-to-I editings for CDS2

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

Top

The effects of the RNA editing to the miRNA binding sites for CDS2

RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

ADediting_1641242

chr20_5195172_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-3622a-5p

chr20

5195170

5195176

7mer-m8

5195158

5195177

156

-26.6

ADediting_1641242

chr20_5195172_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-564

chr20

5195169

5195175

7mer-m8

5195158

5195176

150

-22.06

ADediting_946116

chr20_5194893_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-29a-3p

chr20

5194891

5194898

8mer-1a

5194875

5194898

147

-17.6

ADediting_946116

chr20_5194893_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-29b-3p

chr20

5194891

5194898

8mer-1a

5194876

5194898

145

-15.63

ADediting_946116

chr20_5194893_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-29c-3p

chr20

5194891

5194898

8mer-1a

5194877

5194898

145

-15.65

ADediting_946116

chr20_5194893_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-6872-3p

chr20

5194887

5194893

7mer-m8

5194874

5194894

146

-17.12

ADediting_946116

chr20_5194893_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-767-5p

chr20

5194890

5194896

7mer-m8

5194875

5194897

155

-21.93

ADediting_946117

chr20_5194900_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-5195-5p

chr20

5194897

5194903

7mer-m8

5194880

5194904

145

-22.91

ADediting_946118

chr20_5194911_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-3912-3p

chr20

5194908

5194915

8mer-1a

5194895

5194915

140

-12.66

ADediting_946119

chr20_5195158_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-1178-3p

chr20

5195155

5195161

7mer-m8

5195142

5195162

152

-16.16

ADediting_946121

chr20_5195166_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-105-5p

chr20

5195159

5195165

7mer-m8

5195144

5195166

150

-13.43

ADediting_946121

chr20_5195166_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-7853-5p

chr20

5195159

5195165

7mer-m8

5195143

5195166

145

-12.27

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

ADediting_1641242

chr20_5195172_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-3622b-5p

chr20

5195169

5195175

7mer-m8

5195157

5195176

142

-19.43

ADediting_1641242

chr20_5195172_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-5579-5p

chr20

5195166

5195172

7mer-m8

5195153

5195173

145

-14.82

ADediting_946114

chr20_5194877_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-4477a

chr20

5194873

5194879

7mer-m8

5194854

5194880

154

-10.38

ADediting_946114

chr20_5194877_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-4503

chr20

5194871

5194877

7mer-m8

5194859

5194878

145

-6.18

ADediting_946115

chr20_5194878_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-4477a

chr20

5194873

5194879

7mer-m8

5194854

5194880

154

-10.38

ADediting_946115

chr20_5194878_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-4503

chr20

5194871

5194877

7mer-m8

5194859

5194878

145

-6.18

ADediting_946116

chr20_5194893_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-4633-5p

chr20

5194886

5194892

7mer-m8

5194874

5194893

155

-17.65

ADediting_946121

chr20_5195166_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-190b-3p

chr20

5195160

5195166

7mer-m8

5195146

5195167

152

-11.23

RNA A-to-I editing in lncRNA gained miRNA binding sites.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

ADediting_945466

chr20_5128524_+

ENSG00000101290.14

ENST00000468817.5

CDS2-205

hsa-miR-513a-5p

chr20

5128519

5128525

7mer-m8

5128508

5128526

146

-16.83

ADediting_945467

chr20_5128525_+

ENSG00000101290.14

ENST00000468817.5

CDS2-205

hsa-miR-3117-3p

chr20

5128524

5128530

7mer-m8

5128512

5128531

142

-16.11

ADediting_945467

chr20_5128525_+

ENSG00000101290.14

ENST00000468817.5

CDS2-205

hsa-miR-4759

chr20

5128523

5128530

8mer-1a

5128510

5128530

150

-14.17

RNA A-to-I editing in lncRNA lost miRNA binding sites.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

ADediting_945466

chr20_5128524_+

ENSG00000101290.14

ENST00000468817.5

CDS2-205

hsa-miR-10399-5p

chr20

5128520

5128526

7mer-m8

5128507

5128527

140

-11.04

ADediting_945466

chr20_5128524_+

ENSG00000101290.14

ENST00000468817.5

CDS2-205

hsa-miR-6504-3p

chr20

5128520

5128526

7mer-m8

5128506

5128527

149

-10.95

ADediting_945466

chr20_5128524_+

ENSG00000101290.14

ENST00000468817.5

CDS2-205

hsa-miR-7151-3p

chr20

5128518

5128525

8mer-1a

5128506

5128525

149

-14.4

ADediting_945467

chr20_5128525_+

ENSG00000101290.14

ENST00000468817.5

CDS2-205

hsa-miR-10399-5p

chr20

5128520

5128526

7mer-m8

5128507

5128527

140

-11.04

ADediting_945467

chr20_5128525_+

ENSG00000101290.14

ENST00000468817.5

CDS2-205

hsa-miR-6504-3p

chr20

5128520

5128526

7mer-m8

5128506

5128527

149

-10.95

ADediting_945468

chr20_5128551_+

ENSG00000101290.14

ENST00000468817.5

CDS2-205

hsa-miR-1976

chr20

5128549

5128555

7mer-m8

5128535

5128556

153

-29.23

ADediting_945468

chr20_5128551_+

ENSG00000101290.14

ENST00000468817.5

CDS2-205

hsa-miR-660-3p

chr20

5128550

5128557

8mer-1a

5128538

5128557

144

-16.11

ADediting_945468

chr20_5128551_+

ENSG00000101290.14

ENST00000468817.5

CDS2-205

hsa-miR-6747-3p

chr20

5128547

5128554

8mer-1a

5128532

5128554

149

-23.16

RNA A-to-I editing in miRNAs gained binding to lncRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

ADediting_1471004

chr9_63819627_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-4477b

chr20

5191426

5191432

7mer-m8

5191412

5191433

140

-10.13

ADediting_1535954

chr14_101045974_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-381-3p

chr20

5195632

5195638

7mer-m8

5195618

5195639

152

-20.13

ADediting_1556067

chr19_40282625_-

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-641

chr20

5190982

5190988

7mer-m8

5190965

5190989

155

-16.18

ADediting_1631458

chr19_40282624_-

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-641

chr20

5195645

5195651

7mer-m8

5195626

5195652

141

-16

ADediting_496066

chr15_66496985_-

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-4512

chr20

5191826

5191832

7mer-m8

5191809

5191833

142

-17.13

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

ADediting_1391023

chr8_140732605_-

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-151a-3p

chr20

5190399

5190405

7mer-m8

5190386

5190406

143

-11

ADediting_1471003

chr9_63819626_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-4477b

chr20

5192047

5192053

7mer-m8

5192033

5192054

148

-9.07

ADediting_1471004

chr9_63819627_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-4477b

chr20

5192047

5192053

7mer-m8

5192033

5192054

148

-9.07

ADediting_1535953

chr14_101045971_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-381-3p

chr20

5192788

5192794

7mer-m8

5192772

5192795

154

-11.89

ADediting_1535953

chr14_101045971_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-381-3p

chr20

5196335

5196341

7mer-m8

5196318

5196342

154

-14.55

ADediting_1535953

chr14_101045971_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-381-3p

chr20

5196614

5196620

7mer-m8

5196599

5196621

152

-16.62

ADediting_1535954

chr14_101045974_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-381-3p

chr20

5192788

5192794

7mer-m8

5192772

5192795

154

-11.89

ADediting_1535954

chr14_101045974_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-381-3p

chr20

5196335

5196341

7mer-m8

5196318

5196342

154

-14.55

ADediting_1535954

chr14_101045974_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-381-3p

chr20

5196614

5196620

7mer-m8

5196599

5196621

152

-16.62

ADediting_291761

chr11_93733708_-

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-1304-3p

chr20

5193595

5193601

7mer-m8

5193581

5193602

147

-13.97

ADediting_496066

chr15_66496985_-

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-4512

chr20

5192030

5192036

7mer-m8

5192016

5192037

148

-17.49

ADediting_98288

chr1_32086990_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-5585-3p

chr20

5192539

5192545

7mer-m8

5192525

5192546

146

-11.6

ADediting_98289

chr1_32086992_+

ENSG00000101290.14

ENST00000460006.6

CDS2-203

hsa-miR-5585-3p

chr20

5192539

5192545

7mer-m8

5192525

5192546

146

-11.6

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for CDS2

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000460006.6	protein_coding
ENST00000468817.5	lncRNA

RNA A-to-I editing in miRNA.

ADeditom_ID

ENST

mir_ID

Editing_Information

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

RNA A-to-I editing in mRNA.

ADeditom_ID	ENST	Editing_Information	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
ADediting_946114	ENST00000460006.6	chr20_5194877_+	6066	-3083.40	-3083.70	-3097.40
ADediting_946115	ENST00000460006.6	chr20_5194878_+	6067	-3086.30	-3083.70	-3097.40
ADediting_946116	ENST00000460006.6	chr20_5194893_+	6082	-3090.30	-3083.70	-3097.40
ADediting_946117	ENST00000460006.6	chr20_5194900_+	6089	-3083.30	-3083.70	-3097.40
ADediting_946118	ENST00000460006.6	chr20_5194911_+	6100	-3090.40	-3083.70	-3097.40
ADediting_946119	ENST00000460006.6	chr20_5195158_+	6347	-3083.80	-3083.70	-3097.40
ADediting_946120	ENST00000460006.6	chr20_5195159_+	6348	-3083.30	-3083.70	-3097.40
ADediting_946121	ENST00000460006.6	chr20_5195166_+	6355	-3083.40	-3083.70	-3097.40
ADediting_1641242	ENST00000460006.6	chr20_5195172_+	6361	-3084.00	-3083.70	-3097.40

RNA A-to-I editing in lncRNA.

ADeditom_ID	ENST	Editing_Information	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
ADediting_945466	ENST00000468817.5	chr20_5128524_+	516	-914.50	-915.00	-913.40
ADediting_945467	ENST00000468817.5	chr20_5128525_+	517	-915.00	-915.00	-913.40
ADediting_945468	ENST00000468817.5	chr20_5128551_+	543	-914.30	-915.00	-913.40

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Relation with ADAR for CDS2

Correlation between ADAR gene expression and RNA editing frequency

Tissue	ADeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
DLPFC	ADediting_945502	chr20_5130823_+	0.125632857414551	-0.0871728372248858	0.00255011192482954	-0.170801860883512	1.13971316783614e-10	0.355574352431095
DLPFC	ADediting_946116	chr20_5194893_+	7.9130291201195e-11	0.358409551570484	1.78335956696639e-08	0.313053872107494	0.674428047163962	-0.0239521979816152
STG	ADediting_946118	chr20_5194911_+	0.00495648749956315	0.303848321546352	0.102263696370942	0.179519832633085	0.313906176590859	0.111204210602086

Correlation between ADAR gene expression and this gene's expression

Tissue	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
DLPFC	1.22979646975422e-150	0.944234347897703	6.98521492284058e-90	0.855132157708141	0.035720201419674	0.119333108824475
AC	1.70475904847816e-109	0.929601353739583	1.69600112445652e-71	0.851533015098252	2.26588980010442e-12	0.424735141620804
PCC	1.00828280573965e-80	0.923783467980661	3.03267104112887e-68	0.895176702433955	0.0473318948320033	0.143705451191406
CER	1.46130068458893e-82	0.958509744997647	7.07230000540653e-44	0.854178054827504	0.00378116296716072	0.235089859591127
TCX	6.70610082275131e-71	0.939800662746216	2.03659114193432e-26	0.731751733981468	0.0909956633941508	0.138494421820611
FP	7.47659234501398e-29	0.71222436914941	2.5619839932979e-39	0.790478782071142	0.00607925626936296	0.20488953119001
IFG	9.8949046061481e-09	0.8757327791731	6.97909703980904e-06	0.769295997050435	0.798978665772175	0.0536435507407895
PG	1.69754389831322e-63	0.886532751287775	5.47785001988023e-43	0.80170838645826	0.910004027397716	-0.0083441215331525
STG	6.50921449939543e-26	0.86197592331829	2.95283017418104e-20	0.80465677224651	0.3184998097302	0.110160064447459

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Relation with AD stages for CDS2

Correlation between AD stages and RNA editing frequency

Tissue

ADeditomID

position

P-val

Coeff.

Correlation between AD stages and this gene's expression

Tissue	P-val	Coeff.
CER	5.51905741496956e-05	0.377930632683656
TCX	0.000344836006581503	0.341182628776156

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RelatedDrugs for CDS2

Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

Top

RelatedDiseases for CDS2

Diseases associated with this gene.
(DisGeNet 4.0)

Gene

Disease ID

Disease name

# pubmeds

Source

Home

Download

Statistics

Landscape

Help

Contact

Gene summary for CDS2

RNA A-to-I events for CDS2

RNA editing positional annotations for CDS2 using Annovar

RNA A-to-I editing events in the alternative splicing sites for CDS2

Differntial gene expression between RNA A-to-I edited versus non-edited samples for CDS2

Protein coding region RNA A-to-I editings for CDS2

The effects of the RNA editing to the miRNA binding sites for CDS2

The effects of the RNA editing to the stability of the RNA structures for CDS2

Relation with ADAR for CDS2

Relation with AD stages for CDS2

RelatedDrugs for CDS2

RelatedDiseases for CDS2

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited versus non-edited samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with AD stages
	Related drugs with this gene
	Related diseases with this gene