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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for SNHG3 |
 Gene summary |
| Gene information | Gene symbol | SNHG3 | Gene ID | 8420 |
| Gene name | small nucleolar RNA host gene 3 | |
| Synonyms | NCRNA00014|RNU17C|RNU17D|U17HG|U17HG-A|U17HG-AB | |
| Cytomap | 1p35.3 | |
| Type of gene | ncRNA | |
| Description | U17 small nucleolar RNA hostsmall nucleolar RNA host gene (non-protein coding) 3small nucleolar RNA host gene 3 (non-protein coding) | |
| Modification date | 20200313 | |
| UniProtAcc | ||
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for SNHG3 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_93241(28509322, +), ADediting_93242(28509335, +), ADediting_93243(28509341, +), ADediting_93244(28509359, +), ADediting_93245(28509367, +), ADediting_93246(28509368, +), ADediting_93247(28509371, +), ADediting_93248(28509381, +), ADediting_93249(28509383, +), ADediting_93250(28509391, +), ADediting_93251(28509397, +), ADediting_93252(28509399, +), ADediting_93253(28509416, +), ADediting_93254(28509422, +), ADediting_93255(28509425, +), ADediting_93256(28509427, +), ADediting_93257(28509432, +), ADediting_93258(28509439, +), ADediting_93259(28509444, +), ADediting_93260(28509451, +), ADediting_93261(28509486, +), ADediting_93262(28509491, +), ADediting_93263(28509501, +), ADediting_93264(28509513, +), ADediting_93265(28509515, +), ADediting_93266(28510360, +), ADediting_93267(28510376, +), ADediting_93268(28510382, +), ADediting_93269(28510383, +), ADediting_93270(28510388, +), ADediting_93271(28510395, +), ADediting_93272(28510400, +), ADediting_93273(28510405, +), ADediting_93274(28510437, +), ADediting_93275(28510446, +), ADediting_93276(28510447, +), ADediting_93277(28510461, +), ADediting_93278(28510462, +), ADediting_93279(28510463, +), ADediting_93280(28510464, +), ADediting_93281(28510465, +), ADediting_93282(28510467, +), ADediting_93283(28510470, +), ADediting_93284(28510471, +), ADediting_93285(28510474, +), ADediting_93286(28510475, +), ADediting_93287(28510482, +), ADediting_93288(28510513, +), ADediting_93289(28510525, +), ADediting_1519041(28509442, +), ADediting_1519042(28509781, +), ADediting_1519043(28510374, +), ADediting_1519044(28510423, +), ADediting_1600375(28509346, +), |
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RNA editing positional annotations for SNHG3 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_93241 | chr1_28509322_+ | ncRNA_exonic |
| ADediting_93242 | chr1_28509335_+ | ncRNA_exonic |
| ADediting_93243 | chr1_28509341_+ | ncRNA_exonic |
| ADediting_93244 | chr1_28509359_+ | ncRNA_exonic |
| ADediting_93245 | chr1_28509367_+ | ncRNA_exonic |
| ADediting_93246 | chr1_28509368_+ | ncRNA_exonic |
| ADediting_93247 | chr1_28509371_+ | ncRNA_exonic |
| ADediting_93248 | chr1_28509381_+ | ncRNA_exonic |
| ADediting_93249 | chr1_28509383_+ | ncRNA_exonic |
| ADediting_93250 | chr1_28509391_+ | ncRNA_exonic |
| ADediting_93251 | chr1_28509397_+ | ncRNA_exonic |
| ADediting_93252 | chr1_28509399_+ | ncRNA_exonic |
| ADediting_93253 | chr1_28509416_+ | ncRNA_exonic |
| ADediting_93254 | chr1_28509422_+ | ncRNA_exonic |
| ADediting_93255 | chr1_28509425_+ | ncRNA_exonic |
| ADediting_93256 | chr1_28509427_+ | ncRNA_exonic |
| ADediting_93257 | chr1_28509432_+ | ncRNA_exonic |
| ADediting_93258 | chr1_28509439_+ | ncRNA_exonic |
| ADediting_93259 | chr1_28509444_+ | ncRNA_exonic |
| ADediting_93260 | chr1_28509451_+ | ncRNA_exonic |
| ADediting_93261 | chr1_28509486_+ | ncRNA_exonic |
| ADediting_93262 | chr1_28509491_+ | ncRNA_exonic |
| ADediting_93263 | chr1_28509501_+ | ncRNA_exonic |
| ADediting_93264 | chr1_28509513_+ | ncRNA_exonic |
| ADediting_93265 | chr1_28509515_+ | ncRNA_exonic |
| ADediting_93266 | chr1_28510360_+ | ncRNA_exonic |
| ADediting_93267 | chr1_28510376_+ | ncRNA_exonic |
| ADediting_93268 | chr1_28510382_+ | ncRNA_exonic |
| ADediting_93269 | chr1_28510383_+ | ncRNA_exonic |
| ADediting_93270 | chr1_28510388_+ | ncRNA_exonic |
| ADediting_93271 | chr1_28510395_+ | ncRNA_exonic |
| ADediting_93272 | chr1_28510400_+ | ncRNA_exonic |
| ADediting_93273 | chr1_28510405_+ | ncRNA_exonic |
| ADediting_93274 | chr1_28510437_+ | ncRNA_exonic |
| ADediting_93275 | chr1_28510446_+ | ncRNA_exonic |
| ADediting_93276 | chr1_28510447_+ | ncRNA_exonic |
| ADediting_93277 | chr1_28510461_+ | ncRNA_exonic |
| ADediting_93278 | chr1_28510462_+ | ncRNA_exonic |
| ADediting_93279 | chr1_28510463_+ | ncRNA_exonic |
| ADediting_93280 | chr1_28510464_+ | ncRNA_exonic |
| ADediting_93281 | chr1_28510465_+ | ncRNA_exonic |
| ADediting_93282 | chr1_28510467_+ | ncRNA_exonic |
| ADediting_93283 | chr1_28510470_+ | ncRNA_exonic |
| ADediting_93284 | chr1_28510471_+ | ncRNA_exonic |
| ADediting_93285 | chr1_28510474_+ | ncRNA_exonic |
| ADediting_93286 | chr1_28510475_+ | ncRNA_exonic |
| ADediting_93287 | chr1_28510482_+ | ncRNA_exonic |
| ADediting_93288 | chr1_28510513_+ | ncRNA_exonic |
| ADediting_93289 | chr1_28510525_+ | ncRNA_exonic |
| ADediting_1519041 | chr1_28509442_+ | ncRNA_exonic |
| ADediting_1519042 | chr1_28509781_+ | ncRNA_exonic |
| ADediting_1519043 | chr1_28510374_+ | ncRNA_exonic |
| ADediting_1519044 | chr1_28510423_+ | ncRNA_exonic |
| ADediting_1600375 | chr1_28509346_+ | ncRNA_exonic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_93241 | chr1_28509322_+ | SINE | Alu | Name=AluSx3 |
| ADediting_93242 | chr1_28509335_+ | SINE | Alu | Name=AluSx3 |
| ADediting_93243 | chr1_28509341_+ | SINE | Alu | Name=AluSx3 |
| ADediting_93244 | chr1_28509359_+ | SINE | Alu | Name=AluSx3 |
| ADediting_93245 | chr1_28509367_+ | SINE | Alu | Name=AluSx3 |
| ADediting_93246 | chr1_28509368_+ | SINE | Alu | Name=AluSx3 |
| ADediting_93247 | chr1_28509371_+ | SINE | Alu | Name=AluSx3 |
| ADediting_93248 | chr1_28509381_+ | SINE | Alu | Name=AluSx3 |
| ADediting_93249 | chr1_28509383_+ | SINE | Alu | Name=AluSx3 |
| ADediting_93250 | chr1_28509391_+ | SINE | Alu | Name=AluSx3 |
| ADediting_93251 | chr1_28509397_+ | SINE | Alu | Name=AluSx3 |
| ADediting_93252 | chr1_28509399_+ | SINE | Alu | Name=AluSx3 |
| ADediting_93253 | chr1_28509416_+ | SINE | Alu | Name=AluSx3 |
| ADediting_93254 | chr1_28509422_+ | SINE | Alu | Name=AluSx3 |
| ADediting_93255 | chr1_28509425_+ | SINE | Alu | Name=AluSx3 |
| ADediting_93256 | chr1_28509427_+ | SINE | Alu | Name=AluSx3 |
| ADediting_93257 | chr1_28509432_+ | SINE | Alu | Name=AluSx3 |
| ADediting_93258 | chr1_28509439_+ | SINE | Alu | Name=AluSx3 |
| ADediting_93259 | chr1_28509444_+ | SINE | Alu | Name=AluSx3 |
| ADediting_93260 | chr1_28509451_+ | SINE | Alu | Name=AluSx3 |
| ADediting_93261 | chr1_28509486_+ | SINE | Alu | Name=AluSx3 |
| ADediting_93262 | chr1_28509491_+ | SINE | Alu | Name=AluSx3 |
| ADediting_93263 | chr1_28509501_+ | SINE | Alu | Name=AluSx3 |
| ADediting_93264 | chr1_28509513_+ | SINE | Alu | Name=AluSx3 |
| ADediting_93265 | chr1_28509515_+ | SINE | Alu | Name=AluSx3 |
| ADediting_93266 | chr1_28510360_+ | SINE | Alu | Name=AluSc |
| ADediting_93267 | chr1_28510376_+ | SINE | Alu | Name=AluSc |
| ADediting_93268 | chr1_28510382_+ | SINE | Alu | Name=AluSc |
| ADediting_93269 | chr1_28510383_+ | SINE | Alu | Name=AluSc |
| ADediting_93270 | chr1_28510388_+ | SINE | Alu | Name=AluSc |
| ADediting_93271 | chr1_28510395_+ | SINE | Alu | Name=AluSc |
| ADediting_93272 | chr1_28510400_+ | SINE | Alu | Name=AluSc |
| ADediting_93273 | chr1_28510405_+ | SINE | Alu | Name=AluSc |
| ADediting_93274 | chr1_28510437_+ | SINE | Alu | Name=AluSc |
| ADediting_93275 | chr1_28510446_+ | SINE | Alu | Name=AluSc |
| ADediting_93276 | chr1_28510447_+ | SINE | Alu | Name=AluSc |
| ADediting_93277 | chr1_28510461_+ | SINE | Alu | Name=AluSc |
| ADediting_93278 | chr1_28510462_+ | SINE | Alu | Name=AluSc |
| ADediting_93279 | chr1_28510463_+ | SINE | Alu | Name=AluSc |
| ADediting_93280 | chr1_28510464_+ | SINE | Alu | Name=AluSc |
| ADediting_93281 | chr1_28510465_+ | SINE | Alu | Name=AluSc |
| ADediting_93282 | chr1_28510467_+ | SINE | Alu | Name=AluSc |
| ADediting_93283 | chr1_28510470_+ | SINE | Alu | Name=AluSc |
| ADediting_93284 | chr1_28510471_+ | SINE | Alu | Name=AluSc |
| ADediting_93285 | chr1_28510474_+ | SINE | Alu | Name=AluSc |
| ADediting_93286 | chr1_28510475_+ | SINE | Alu | Name=AluSc |
| ADediting_93287 | chr1_28510482_+ | SINE | Alu | Name=AluSc |
| ADediting_93288 | chr1_28510513_+ | SINE | Alu | Name=AluSc |
| ADediting_93289 | chr1_28510525_+ | SINE | Alu | Name=AluSc |
| ADediting_1519041 | chr1_28509442_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1519043 | chr1_28510374_+ | SINE | Alu | Name=AluSc |
| ADediting_1519044 | chr1_28510423_+ | SINE | Alu | Name=AluSc |
| ADediting_1600375 | chr1_28509346_+ | SINE | Alu | Name=AluSx3 |
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RNA A-to-I editing events in the alternative splicing sites for SNHG3 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SNHG3 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
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| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
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Protein coding region RNA A-to-I editings for SNHG3 |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for SNHG3 |
| RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. |
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| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1519041 | chr1_28509442_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-433-5p | chr1 | 28509437 | 28509444 | 8mer-1a | 28509421 | 28509444 | 158 | -24.11 |
| ADediting_1519042 | chr1_28509781_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-4803 | chr1 | 28509777 | 28509783 | 7mer-m8 | 28509765 | 28509784 | 151 | -13.57 |
| ADediting_1600375 | chr1_28509346_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-4485-5p | chr1 | 28509340 | 28509346 | 7mer-m8 | 28509332 | 28509347 | 140 | -18.63 |
| ADediting_1600375 | chr1_28509346_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-589-5p | chr1 | 28509345 | 28509351 | 7mer-m8 | 28509332 | 28509352 | 152 | -20.87 |
| ADediting_93241 | chr1_28509322_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-17-3p | chr1 | 28509316 | 28509322 | 7mer-m8 | 28509300 | 28509323 | 154 | -16.64 |
| ADediting_93242 | chr1_28509335_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-1247-3p | chr1 | 28509331 | 28509337 | 7mer-m8 | 28509316 | 28509338 | 148 | -23.78 |
| ADediting_93244 | chr1_28509359_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-6089 | chr1 | 28509358 | 28509364 | 7mer-m8 | 28509342 | 28509365 | 164 | -39.99 |
| ADediting_93245 | chr1_28509367_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-6771-5p | chr1 | 28509362 | 28509368 | 7mer-m8 | 28509350 | 28509369 | 160 | -34.33 |
| ADediting_93247 | chr1_28509371_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-3614-5p | chr1 | 28509365 | 28509371 | 7mer-m8 | 28509349 | 28509372 | 152 | -25.27 |
| ADediting_93247 | chr1_28509371_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-4691-3p | chr1 | 28509369 | 28509375 | 7mer-m8 | 28509349 | 28509376 | 150 | -21.56 |
| ADediting_93248 | chr1_28509381_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-17-3p | chr1 | 28509378 | 28509384 | 7mer-m8 | 28509363 | 28509385 | 162 | -20.42 |
| ADediting_93250 | chr1_28509391_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-1227-3p | chr1 | 28509389 | 28509395 | 7mer-m8 | 28509377 | 28509396 | 146 | -13.18 |
| ADediting_93250 | chr1_28509391_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-3064-3p | chr1 | 28509388 | 28509394 | 7mer-m8 | 28509374 | 28509395 | 146 | -16.2 |
| ADediting_93250 | chr1_28509391_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-3085-5p | chr1 | 28509390 | 28509397 | 8mer-1a | 28509369 | 28509397 | 151 | -24.01 |
| ADediting_93251 | chr1_28509397_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-1250-5p | chr1 | 28509391 | 28509397 | 7mer-m8 | 28509378 | 28509398 | 150 | -21.5 |
| ADediting_93251 | chr1_28509397_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-4466 | chr1 | 28509395 | 28509401 | 7mer-m8 | 28509385 | 28509402 | 143 | -22.71 |
| ADediting_93251 | chr1_28509397_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-4746-3p | chr1 | 28509392 | 28509399 | 8mer-1a | 28509378 | 28509399 | 149 | -23.76 |
| ADediting_93251 | chr1_28509397_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-675-5p | chr1 | 28509395 | 28509401 | 7mer-m8 | 28509380 | 28509402 | 142 | -20.03 |
| ADediting_93257 | chr1_28509432_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-6771-3p | chr1 | 28509431 | 28509437 | 7mer-m8 | 28509417 | 28509438 | 158 | -18.1 |
| ADediting_93258 | chr1_28509439_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-8074 | chr1 | 28509438 | 28509444 | 7mer-m8 | 28509423 | 28509445 | 162 | -22.61 |
| ADediting_93260 | chr1_28509451_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-3940-3p | chr1 | 28509449 | 28509455 | 7mer-m8 | 28509435 | 28509456 | 140 | -22.76 |
| ADediting_93261 | chr1_28509486_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-4767 | chr1 | 28509481 | 28509487 | 7mer-m8 | 28509465 | 28509488 | 142 | -17.99 |
| ADediting_93261 | chr1_28509486_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-6765-5p | chr1 | 28509485 | 28509491 | 7mer-m8 | 28509465 | 28509492 | 158 | -29.87 |
| ADediting_93266 | chr1_28510360_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-3940-3p | chr1 | 28510358 | 28510364 | 7mer-m8 | 28510344 | 28510365 | 144 | -15.48 |
| ADediting_93267 | chr1_28510376_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-1268a | chr1 | 28510373 | 28510379 | 7mer-m8 | 28510363 | 28510380 | 141 | -22.15 |
| ADediting_93267 | chr1_28510376_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-1268b | chr1 | 28510373 | 28510379 | 7mer-m8 | 28510361 | 28510380 | 141 | -24 |
| ADediting_93268 | chr1_28510382_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-638 | chr1 | 28510382 | 28510388 | 7mer-1a | 28510364 | 28510388 | 155 | -35.53 |
| ADediting_93270 | chr1_28510388_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-371a-3p | chr1 | 28510387 | 28510393 | 7mer-m8 | 28510374 | 28510394 | 146 | -18.07 |
| ADediting_93273 | chr1_28510405_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-4707-3p | chr1 | 28510402 | 28510408 | 7mer-m8 | 28510388 | 28510409 | 167 | -27.39 |
| ADediting_93274 | chr1_28510437_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-3190-5p | chr1 | 28510431 | 28510437 | 7mer-m8 | 28510419 | 28510438 | 145 | -16.08 |
| ADediting_93275 | chr1_28510446_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-1182 | chr1 | 28510445 | 28510451 | 7mer-m8 | 28510430 | 28510452 | 142 | -17.48 |
| ADediting_93275 | chr1_28510446_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-1229-3p | chr1 | 28510441 | 28510447 | 7mer-m8 | 28510424 | 28510448 | 146 | -14.04 |
| ADediting_93276 | chr1_28510447_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-3158-3p | chr1 | 28510445 | 28510451 | 7mer-m8 | 28510427 | 28510452 | 154 | -23.07 |
| ADediting_93276 | chr1_28510447_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-412-3p | chr1 | 28510441 | 28510447 | 7mer-m8 | 28510426 | 28510448 | 151 | -16.28 |
| ADediting_93276 | chr1_28510447_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-6754-3p | chr1 | 28510441 | 28510447 | 7mer-m8 | 28510428 | 28510448 | 154 | -18.35 |
| ADediting_93277 | chr1_28510461_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-30a-3p | chr1 | 28510458 | 28510465 | 8mer-1a | 28510441 | 28510465 | 154 | -14.69 |
| ADediting_93277 | chr1_28510461_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-30d-3p | chr1 | 28510458 | 28510465 | 8mer-1a | 28510440 | 28510465 | 155 | -17.38 |
| ADediting_93277 | chr1_28510461_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-30e-3p | chr1 | 28510458 | 28510465 | 8mer-1a | 28510441 | 28510465 | 154 | -15.5 |
| ADediting_93279 | chr1_28510463_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-630 | chr1 | 28510462 | 28510469 | 8mer-1a | 28510443 | 28510469 | 155 | -19.51 |
| ADediting_93282 | chr1_28510467_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-153-5p | chr1 | 28510461 | 28510467 | 7mer-m8 | 28510448 | 28510468 | 146 | -10.15 |
| ADediting_93282 | chr1_28510467_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-3680-3p | chr1 | 28510465 | 28510472 | 8mer-1a | 28510450 | 28510472 | 140 | -12.39 |
| ADediting_93283 | chr1_28510470_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-4742-3p | chr1 | 28510464 | 28510471 | 8mer-1a | 28510449 | 28510471 | 142 | -14.28 |
| ADediting_93283 | chr1_28510470_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-4778-5p | chr1 | 28510467 | 28510474 | 8mer-1a | 28510453 | 28510474 | 145 | -10.24 |
| ADediting_93284 | chr1_28510471_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-643 | chr1 | 28510465 | 28510472 | 8mer-1a | 28510450 | 28510472 | 151 | -19.17 |
| ADediting_93288 | chr1_28510513_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-718 | chr1 | 28510510 | 28510516 | 7mer-m8 | 28510496 | 28510517 | 148 | -19.3 |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1519041 | chr1_28509442_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-5583-3p | chr1 | 28509440 | 28509446 | 7mer-m8 | 28509425 | 28509447 | 147 | -8.07 |
| ADediting_1519042 | chr1_28509781_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-340-5p | chr1 | 28509775 | 28509781 | 7mer-m8 | 28509764 | 28509782 | 148 | -6.88 |
| ADediting_1519043 | chr1_28510374_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-4455 | chr1 | 28510373 | 28510379 | 7mer-m8 | 28510364 | 28510380 | 143 | -13.91 |
| ADediting_1519043 | chr1_28510374_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-6807-5p | chr1 | 28510368 | 28510374 | 7mer-m8 | 28510353 | 28510375 | 144 | -21.24 |
| ADediting_1519044 | chr1_28510423_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-3675-3p | chr1 | 28510422 | 28510428 | 7mer-m8 | 28510408 | 28510429 | 140 | -8.37 |
| ADediting_1519044 | chr1_28510423_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-4777-5p | chr1 | 28510419 | 28510425 | 7mer-m8 | 28510404 | 28510426 | 150 | -13.34 |
| ADediting_1519044 | chr1_28510423_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-517-5p | chr1 | 28510420 | 28510427 | 8mer-1a | 28510406 | 28510427 | 150 | -19.02 |
| ADediting_93241 | chr1_28509322_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-495-5p | chr1 | 28509319 | 28509325 | 7mer-m8 | 28509305 | 28509326 | 140 | -11.91 |
| ADediting_93241 | chr1_28509322_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-6516-5p | chr1 | 28509316 | 28509322 | 7mer-m8 | 28509299 | 28509323 | 154 | -15.09 |
| ADediting_93242 | chr1_28509335_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-3689a-3p | chr1 | 28509329 | 28509335 | 7mer-m8 | 28509313 | 28509336 | 151 | -26.49 |
| ADediting_93242 | chr1_28509335_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-490-3p | chr1 | 28509333 | 28509339 | 7mer-m8 | 28509318 | 28509340 | 146 | -17.33 |
| ADediting_93242 | chr1_28509335_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-6779-5p | chr1 | 28509329 | 28509335 | 7mer-m8 | 28509318 | 28509336 | 148 | -23.8 |
| ADediting_93242 | chr1_28509335_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-6780a-5p | chr1 | 28509329 | 28509335 | 7mer-m8 | 28509311 | 28509336 | 148 | -25.99 |
| ADediting_93243 | chr1_28509341_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-6078 | chr1 | 28509339 | 28509346 | 8mer-1a | 28509328 | 28509346 | 149 | -21.5 |
| ADediting_93244 | chr1_28509359_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-4478 | chr1 | 28509357 | 28509363 | 7mer-m8 | 28509349 | 28509364 | 149 | -25.05 |
| ADediting_93244 | chr1_28509359_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-4649-3p | chr1 | 28509354 | 28509360 | 7mer-m8 | 28509341 | 28509361 | 140 | -16.88 |
| ADediting_93244 | chr1_28509359_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-7160-5p | chr1 | 28509355 | 28509361 | 7mer-m8 | 28509342 | 28509362 | 146 | -22.47 |
| ADediting_93245 | chr1_28509367_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-12126 | chr1 | 28509364 | 28509371 | 8mer-1a | 28509348 | 28509371 | 147 | -13.23 |
| ADediting_93245 | chr1_28509367_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-30b-3p | chr1 | 28509361 | 28509368 | 8mer-1a | 28509347 | 28509368 | 151 | -15.38 |
| ADediting_93245 | chr1_28509367_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-3689a-3p | chr1 | 28509361 | 28509368 | 8mer-1a | 28509348 | 28509368 | 147 | -18.72 |
| ADediting_93245 | chr1_28509367_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-3689b-3p | chr1 | 28509361 | 28509368 | 8mer-1a | 28509348 | 28509368 | 147 | -17.55 |
| ADediting_93245 | chr1_28509367_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-3689c | chr1 | 28509361 | 28509368 | 8mer-1a | 28509348 | 28509368 | 147 | -17.55 |
| ADediting_93245 | chr1_28509367_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-6779-5p | chr1 | 28509361 | 28509368 | 8mer-1a | 28509350 | 28509368 | 148 | -22.58 |
| ADediting_93245 | chr1_28509367_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-6780a-5p | chr1 | 28509361 | 28509368 | 8mer-1a | 28509345 | 28509368 | 152 | -25.37 |
| ADediting_93245 | chr1_28509367_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-887-5p | chr1 | 28509362 | 28509368 | 7mer-m8 | 28509350 | 28509369 | 143 | -19.73 |
| ADediting_93246 | chr1_28509368_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-12126 | chr1 | 28509364 | 28509371 | 8mer-1a | 28509348 | 28509371 | 147 | -13.23 |
| ADediting_93246 | chr1_28509368_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-887-5p | chr1 | 28509362 | 28509368 | 7mer-m8 | 28509350 | 28509369 | 143 | -19.73 |
| ADediting_93247 | chr1_28509371_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-5690 | chr1 | 28509369 | 28509375 | 7mer-m8 | 28509356 | 28509376 | 145 | -14.96 |
| ADediting_93248 | chr1_28509381_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-20b-3p | chr1 | 28509378 | 28509384 | 7mer-m8 | 28509363 | 28509385 | 153 | -15.95 |
| ADediting_93249 | chr1_28509383_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-20b-3p | chr1 | 28509378 | 28509384 | 7mer-m8 | 28509363 | 28509385 | 153 | -15.95 |
| ADediting_93252 | chr1_28509399_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-3934-5p | chr1 | 28509397 | 28509403 | 7mer-m8 | 28509383 | 28509404 | 150 | -23.83 |
| ADediting_93255 | chr1_28509425_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-3675-3p | chr1 | 28509424 | 28509430 | 7mer-m8 | 28509410 | 28509431 | 145 | -12.58 |
| ADediting_93256 | chr1_28509427_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-3675-3p | chr1 | 28509424 | 28509430 | 7mer-m8 | 28509410 | 28509431 | 145 | -12.58 |
| ADediting_93257 | chr1_28509432_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-6072 | chr1 | 28509428 | 28509434 | 7mer-m8 | 28509413 | 28509435 | 151 | -15.6 |
| ADediting_93257 | chr1_28509432_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-6891-3p | chr1 | 28509428 | 28509434 | 7mer-m8 | 28509415 | 28509435 | 146 | -12.88 |
| ADediting_93259 | chr1_28509444_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-5583-3p | chr1 | 28509440 | 28509446 | 7mer-m8 | 28509425 | 28509447 | 147 | -8.07 |
| ADediting_93260 | chr1_28509451_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-3190-5p | chr1 | 28509446 | 28509452 | 7mer-m8 | 28509435 | 28509453 | 144 | -16.24 |
| ADediting_93260 | chr1_28509451_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-548s | chr1 | 28509445 | 28509451 | 7mer-m8 | 28509426 | 28509452 | 143 | -13.39 |
| ADediting_93261 | chr1_28509486_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-1228-5p | chr1 | 28509480 | 28509486 | 7mer-m8 | 28509465 | 28509487 | 146 | -27 |
| ADediting_93261 | chr1_28509486_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-541-3p | chr1 | 28509482 | 28509488 | 7mer-m8 | 28509463 | 28509489 | 144 | -19.68 |
| ADediting_93261 | chr1_28509486_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-6134 | chr1 | 28509484 | 28509491 | 8mer-1a | 28509473 | 28509491 | 154 | -21.28 |
| ADediting_93261 | chr1_28509486_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-654-5p | chr1 | 28509482 | 28509488 | 7mer-m8 | 28509471 | 28509489 | 146 | -19.26 |
| ADediting_93262 | chr1_28509491_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-4478 | chr1 | 28509489 | 28509495 | 7mer-m8 | 28509480 | 28509496 | 154 | -23.4 |
| ADediting_93262 | chr1_28509491_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-485-5p | chr1 | 28509490 | 28509496 | 7mer-m8 | 28509476 | 28509497 | 145 | -17.12 |
| ADediting_93262 | chr1_28509491_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-6884-5p | chr1 | 28509490 | 28509496 | 7mer-m8 | 28509476 | 28509497 | 154 | -23.23 |
| ADediting_93262 | chr1_28509491_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-7160-5p | chr1 | 28509487 | 28509493 | 7mer-m8 | 28509476 | 28509494 | 154 | -20.89 |
| ADediting_93262 | chr1_28509491_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-7162-3p | chr1 | 28509486 | 28509492 | 7mer-m8 | 28509475 | 28509493 | 150 | -18.37 |
| ADediting_93266 | chr1_28510360_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-3085-3p | chr1 | 28510355 | 28510361 | 7mer-m8 | 28510341 | 28510362 | 150 | -22.54 |
| ADediting_93266 | chr1_28510360_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-647 | chr1 | 28510354 | 28510360 | 7mer-m8 | 28510340 | 28510361 | 150 | -17.94 |
| ADediting_93266 | chr1_28510360_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-6504-5p | chr1 | 28510355 | 28510361 | 7mer-m8 | 28510341 | 28510362 | 154 | -21.73 |
| ADediting_93267 | chr1_28510376_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-4455 | chr1 | 28510373 | 28510379 | 7mer-m8 | 28510364 | 28510380 | 143 | -13.91 |
| ADediting_93269 | chr1_28510383_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-5089-5p | chr1 | 28510382 | 28510388 | 7mer-m8 | 28510367 | 28510389 | 148 | -14.01 |
| ADediting_93270 | chr1_28510388_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-5089-5p | chr1 | 28510382 | 28510388 | 7mer-m8 | 28510367 | 28510389 | 148 | -14.01 |
| ADediting_93270 | chr1_28510388_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-512-3p | chr1 | 28510387 | 28510393 | 7mer-m8 | 28510373 | 28510394 | 149 | -15.79 |
| ADediting_93270 | chr1_28510388_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-6506-5p | chr1 | 28510383 | 28510389 | 7mer-m8 | 28510368 | 28510390 | 140 | -15.04 |
| ADediting_93273 | chr1_28510405_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-4485-5p | chr1 | 28510404 | 28510411 | 8mer-1a | 28510396 | 28510411 | 150 | -21.76 |
| ADediting_93273 | chr1_28510405_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-4763-5p | chr1 | 28510402 | 28510408 | 7mer-m8 | 28510388 | 28510409 | 148 | -27.32 |
| ADediting_93273 | chr1_28510405_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-6747-3p | chr1 | 28510401 | 28510407 | 7mer-m8 | 28510388 | 28510408 | 151 | -19.46 |
| ADediting_93274 | chr1_28510437_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-1306-3p | chr1 | 28510433 | 28510439 | 7mer-m8 | 28510423 | 28510440 | 146 | -16.24 |
| ADediting_93276 | chr1_28510447_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-6823-5p | chr1 | 28510446 | 28510452 | 7mer-m8 | 28510433 | 28510453 | 147 | -17.98 |
| ADediting_93287 | chr1_28510482_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-6872-3p | chr1 | 28510479 | 28510485 | 7mer-m8 | 28510466 | 28510486 | 141 | -13.01 |
| ADediting_93288 | chr1_28510513_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-5001-3p | chr1 | 28510509 | 28510516 | 8mer-1a | 28510490 | 28510516 | 155 | -25.86 |
| ADediting_93289 | chr1_28510525_+ | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-23a-5p | chr1 | 28510522 | 28510528 | 7mer-m8 | 28510509 | 28510529 | 145 | -16.72 |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1337757 | chr7_5495852_- | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-589-3p | chr1 | 28509004 | 28509010 | 7mer-m8 | 28508988 | 28509011 | 145 | -17.44 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000242125.3 | ENST00000437681.1 | SNHG3-202 | hsa-miR-589-3p | chr1 | 28509004 | 28509010 | 7mer-m8 | 28508988 | 28509011 | 145 | -17.44 |
| ADediting_286380 | chr11_79422188_- | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-5579-3p | chr1 | 28509084 | 28509090 | 7mer-m8 | 28509066 | 28509091 | 149 | -16.35 |
| ADediting_286380 | chr11_79422188_- | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-5579-3p | chr1 | 28510145 | 28510151 | 7mer-m8 | 28510129 | 28510152 | 156 | -19.35 |
| ADediting_286380 | chr11_79422188_- | ENSG00000242125.3 | ENST00000437681.1 | SNHG3-202 | hsa-miR-5579-3p | chr1 | 28509084 | 28509090 | 7mer-m8 | 28509066 | 28509091 | 149 | -16.35 |
| ADediting_291761 | chr11_93733708_- | ENSG00000242125.3 | ENST00000437681.1 | SNHG3-202 | hsa-miR-1304-3p | chr1 | 28506619 | 28506625 | 7mer-m8 | 28506605 | 28506626 | 140 | -14.46 |
| ADediting_496066 | chr15_66496985_- | ENSG00000242125.3 | ENST00000437681.1 | SNHG3-202 | hsa-miR-4512 | chr1 | 28507748 | 28507754 | 7mer-m8 | 28507734 | 28507755 | 140 | -22.02 |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000242125.3 | ENST00000437681.1 | SNHG3-202 | hsa-miR-5688 | chr1 | 28508130 | 28508136 | 7mer-1a | 28508116 | 28508136 | 150 | -22.42 |
| ADediting_1391023 | chr8_140732605_- | ENSG00000242125.3 | ENST00000437681.1 | SNHG3-202 | hsa-miR-151a-3p | chr1 | 28507222 | 28507228 | 7mer-m8 | 28507207 | 28507229 | 141 | -14.85 |
| ADediting_496066 | chr15_66496985_- | ENSG00000242125.3 | ENST00000413987.1 | SNHG3-201 | hsa-miR-4512 | chr1 | 28509733 | 28509739 | 7mer-m8 | 28509719 | 28509740 | 140 | -21.12 |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| Differentially expressed gene-miRNA network |
| Differentially expressed lncRNA-miRNA network |
 |
Top |
The effects of the RNA editing to the stability of the RNA structures for SNHG3 |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000413987.1 | lncRNA |  |  |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_93241 | ENST00000413987.1 | chr1_28509322_+ | 631 | -811.90 | -811.90 | -877.30 |
| ADediting_93242 | ENST00000413987.1 | chr1_28509335_+ | 644 | -818.10 | -811.90 | -877.30 |
| ADediting_93243 | ENST00000413987.1 | chr1_28509341_+ | 650 | -814.50 | -811.90 | -877.30 |
| ADediting_1600375 | ENST00000413987.1 | chr1_28509346_+ | 655 | -811.40 | -811.90 | -877.30 |
| ADediting_93244 | ENST00000413987.1 | chr1_28509359_+ | 668 | -811.20 | -811.90 | -877.30 |
| ADediting_93245 | ENST00000413987.1 | chr1_28509367_+ | 676 | -811.50 | -811.90 | -877.30 |
| ADediting_93246 | ENST00000413987.1 | chr1_28509368_+ | 677 | -811.80 | -811.90 | -877.30 |
| ADediting_93247 | ENST00000413987.1 | chr1_28509371_+ | 680 | -812.90 | -811.90 | -877.30 |
| ADediting_93248 | ENST00000413987.1 | chr1_28509381_+ | 690 | -813.50 | -811.90 | -877.30 |
| ADediting_93249 | ENST00000413987.1 | chr1_28509383_+ | 692 | -812.10 | -811.90 | -877.30 |
| ADediting_93250 | ENST00000413987.1 | chr1_28509391_+ | 700 | -811.40 | -811.90 | -877.30 |
| ADediting_93251 | ENST00000413987.1 | chr1_28509397_+ | 706 | -811.50 | -811.90 | -877.30 |
| ADediting_93252 | ENST00000413987.1 | chr1_28509399_+ | 708 | -815.30 | -811.90 | -877.30 |
| ADediting_93253 | ENST00000413987.1 | chr1_28509416_+ | 725 | -811.90 | -811.90 | -877.30 |
| ADediting_93254 | ENST00000413987.1 | chr1_28509422_+ | 731 | -811.60 | -811.90 | -877.30 |
| ADediting_93255 | ENST00000413987.1 | chr1_28509425_+ | 734 | -811.60 | -811.90 | -877.30 |
| ADediting_93256 | ENST00000413987.1 | chr1_28509427_+ | 736 | -811.90 | -811.90 | -877.30 |
| ADediting_93257 | ENST00000413987.1 | chr1_28509432_+ | 741 | -818.50 | -811.90 | -877.30 |
| ADediting_93258 | ENST00000413987.1 | chr1_28509439_+ | 748 | -811.50 | -811.90 | -877.30 |
| ADediting_1519041 | ENST00000413987.1 | chr1_28509442_+ | 751 | -817.30 | -811.90 | -877.30 |
| ADediting_93259 | ENST00000413987.1 | chr1_28509444_+ | 753 | -817.40 | -811.90 | -877.30 |
| ADediting_93260 | ENST00000413987.1 | chr1_28509451_+ | 760 | -811.20 | -811.90 | -877.30 |
| ADediting_93261 | ENST00000413987.1 | chr1_28509486_+ | 795 | -815.80 | -811.90 | -877.30 |
| ADediting_93262 | ENST00000413987.1 | chr1_28509491_+ | 800 | -811.90 | -811.90 | -877.30 |
| ADediting_93263 | ENST00000413987.1 | chr1_28509501_+ | 810 | -811.60 | -811.90 | -877.30 |
| ADediting_93264 | ENST00000413987.1 | chr1_28509513_+ | 822 | -811.90 | -811.90 | -877.30 |
| ADediting_93265 | ENST00000413987.1 | chr1_28509515_+ | 824 | -818.10 | -811.90 | -877.30 |
| ADediting_1519042 | ENST00000413987.1 | chr1_28509781_+ | 1090 | -818.10 | -811.90 | -877.30 |
| ADediting_93266 | ENST00000413987.1 | chr1_28510360_+ | 1669 | -818.10 | -811.90 | -877.30 |
| ADediting_1519043 | ENST00000413987.1 | chr1_28510374_+ | 1683 | -811.50 | -811.90 | -877.30 |
| ADediting_93267 | ENST00000413987.1 | chr1_28510376_+ | 1685 | -811.20 | -811.90 | -877.30 |
| ADediting_93268 | ENST00000413987.1 | chr1_28510382_+ | 1691 | -812.00 | -811.90 | -877.30 |
| ADediting_93269 | ENST00000413987.1 | chr1_28510383_+ | 1692 | -811.90 | -811.90 | -877.30 |
| ADediting_93270 | ENST00000413987.1 | chr1_28510388_+ | 1697 | -811.20 | -811.90 | -877.30 |
| ADediting_93271 | ENST00000413987.1 | chr1_28510395_+ | 1704 | -811.90 | -811.90 | -877.30 |
| ADediting_93272 | ENST00000413987.1 | chr1_28510400_+ | 1709 | -818.30 | -811.90 | -877.30 |
| ADediting_93273 | ENST00000413987.1 | chr1_28510405_+ | 1714 | -816.60 | -811.90 | -877.30 |
| ADediting_1519044 | ENST00000413987.1 | chr1_28510423_+ | 1732 | -815.10 | -811.90 | -877.30 |
| ADediting_93274 | ENST00000413987.1 | chr1_28510437_+ | 1746 | -811.60 | -811.90 | -877.30 |
| ADediting_93275 | ENST00000413987.1 | chr1_28510446_+ | 1755 | -812.00 | -811.90 | -877.30 |
| ADediting_93276 | ENST00000413987.1 | chr1_28510447_+ | 1756 | -811.90 | -811.90 | -877.30 |
| ADediting_93277 | ENST00000413987.1 | chr1_28510461_+ | 1770 | -812.00 | -811.90 | -877.30 |
| ADediting_93278 | ENST00000413987.1 | chr1_28510462_+ | 1771 | -812.00 | -811.90 | -877.30 |
| ADediting_93279 | ENST00000413987.1 | chr1_28510463_+ | 1772 | -812.00 | -811.90 | -877.30 |
| ADediting_93280 | ENST00000413987.1 | chr1_28510464_+ | 1773 | -812.00 | -811.90 | -877.30 |
| ADediting_93281 | ENST00000413987.1 | chr1_28510465_+ | 1774 | -811.90 | -811.90 | -877.30 |
| ADediting_93282 | ENST00000413987.1 | chr1_28510467_+ | 1776 | -811.90 | -811.90 | -877.30 |
| ADediting_93283 | ENST00000413987.1 | chr1_28510470_+ | 1779 | -812.00 | -811.90 | -877.30 |
| ADediting_93284 | ENST00000413987.1 | chr1_28510471_+ | 1780 | -812.00 | -811.90 | -877.30 |
| ADediting_93285 | ENST00000413987.1 | chr1_28510474_+ | 1783 | -811.90 | -811.90 | -877.30 |
| ADediting_93286 | ENST00000413987.1 | chr1_28510475_+ | 1784 | -818.10 | -811.90 | -877.30 |
| ADediting_93287 | ENST00000413987.1 | chr1_28510482_+ | 1791 | -815.70 | -811.90 | -877.30 |
| ADediting_93288 | ENST00000413987.1 | chr1_28510513_+ | 1822 | -811.90 | -811.90 | -877.30 |
| ADediting_93289 | ENST00000413987.1 | chr1_28510525_+ | 1834 | -811.90 | -811.90 | -877.30 |
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Relation with ADAR for SNHG3 |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| CER | ADediting_93242 | chr1_28509335_+ | 0.0158563631909456 | 0.196673371875767 | 8.88777547839999e-09 | 0.448149162546953 | 0.0102594280298006 | 0.209019603629201 |
| CER | ADediting_93253 | chr1_28509416_+ | 0.000510960606957377 | 0.280361189222357 | 9.24653183333373e-12 | 0.519890072646419 | 0.000853674153635482 | 0.269482670288503 |
| CER | ADediting_93254 | chr1_28509422_+ | 0.0046544866258055 | 0.229890262316787 | 4.92122692830922e-10 | 0.480419411398896 | 0.000658743949709207 | 0.275032322961226 |
| CER | ADediting_93255 | chr1_28509425_+ | 0.0031369767124687 | 0.239671430144361 | 2.73408464173376e-10 | 0.486583442297217 | 0.00060408670803054 | 0.276861195459328 |
| IFG | ADediting_93255 | chr1_28509425_+ | 0.203165013300067 | 0.263480483222023 | 0.0331955793249704 | 0.427158050231855 | 0.0737827653291281 | 0.363847751857614 |
| CER | ADediting_93257 | chr1_28509432_+ | 0.000777743768512163 | 0.271490435080793 | 2.55689156741402e-11 | 0.510259541129881 | 0.00423149419182223 | 0.232287988692575 |
| CER | ADediting_93264 | chr1_28509513_+ | 0.00058192736130454 | 0.277646431099562 | 3.88192378861873e-11 | 0.506217182670379 | 8.12761590583755e-05 | 0.316103721658803 |
| CER | ADediting_93265 | chr1_28509515_+ | 6.32383611681417e-07 | 0.393466336747113 | 1.48601887769762e-12 | 0.536473133637892 | 0.000248938390354691 | 0.294898303691094 |
| CER | ADediting_93276 | chr1_28510447_+ | 0.198554537455803 | 0.105564906456329 | 6.67076764424598e-05 | 0.319685119191147 | 0.0318070411715562 | 0.175393803329464 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 4.84857630398758e-12 | 0.379233337917426 | 2.9759816880646e-09 | 0.328876192339793 | 1.29119478238393e-27 | 0.56566034094171 |
| AC | 7.85630669524654e-48 | 0.757498291277399 | 1.40466256029044e-31 | 0.651422923983043 | 1.12416038630606e-13 | 0.446876481422401 |
| PCC | 2.28871111969231e-07 | 0.363867782836846 | 7.09136704363627e-08 | 0.377850814371673 | 0.00456445003432265 | 0.204395551380074 |
| CER | 3.90648506383574e-06 | 0.366767508228138 | 1.18265737551054e-13 | 0.558030963235727 | 0.0011771211889269 | 0.262437880326521 |
| TCX | 2.60577443144012e-05 | 0.336138951311607 | 0.00524525708363378 | 0.226849350791387 | 0.000142739628057084 | 0.305636261176093 |
| FP | 2.61466416943156e-11 | 0.472986792974715 | 1.97754810309603e-15 | 0.549483637232947 | 0.013777420153992 | 0.184324745688446 |
| IFG | 0.622346843604315 | 0.103540839099819 | 0.337112511428832 | 0.200276021072751 | 0.0426455671533244 | 0.408464259744504 |
| PG | 3.17278441877604e-15 | 0.536006059597186 | 7.52127055424634e-15 | 0.529785502449328 | 0.328213710608299 | 0.0720824017805825 |
| STG | 0.000164651637365722 | 0.399812522001466 | 3.96547045156482e-05 | 0.432587982839739 | 0.931800893657535 | 0.00947929025666217 |
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Relation with AD stages for SNHG3 |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| PCC | ADediting_93242 | chr1_28509335_+ | 2.41558671774711e-05 | 0.300417170448911 |
| CER | ADediting_93242 | chr1_28509335_+ | 6.63861094028118e-05 | 0.374146342326473 |
| CER | ADediting_93253 | chr1_28509416_+ | 9.38183501297956e-05 | 0.366931432783528 |
| CER | ADediting_93254 | chr1_28509422_+ | 3.02027498656705e-07 | 0.469208290769287 |
| CER | ADediting_93255 | chr1_28509425_+ | 1.64710657147651e-05 | 0.401621648645593 |
| CER | ADediting_93257 | chr1_28509432_+ | 3.93184873917111e-07 | 0.465171064270788 |
| CER | ADediting_93259 | chr1_28509444_+ | 2.92173343022707e-05 | 0.390617754358343 |
| CER | ADediting_93262 | chr1_28509491_+ | 0.000160211123764766 | 0.355420810884988 |
| CER | ADediting_93264 | chr1_28509513_+ | 5.72902433098312e-08 | 0.493524961500833 |
| CER | ADediting_93265 | chr1_28509515_+ | 1.5341670251263e-07 | 0.479344800655008 |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
| CER | 2.44368389672048e-08 | 0.505292951297533 |
| TCX | 7.59671946653155e-05 | 0.374662678926405 |
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RelatedDrugs for SNHG3 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SNHG3 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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