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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited versus non-edited samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with AD stages

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene


Gene summary for C6orf62

check button Gene summary
Gene informationGene symbol

C6orf62

Gene ID

81688

Gene namechromosome 6 open reading frame 62
SynonymsNbla00237|XTP12|dJ30M3.2
Cytomap

6p22.3

Type of geneprotein-coding
Descriptionuncharacterized protein C6orf62HBV X-transactivated gene 12 proteinHBV X-transactivated protein 12HBV XAg-transactivated protein 12
Modification date20200313
UniProtAcc

Q9GZU0,

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for C6orf62

check buttonRNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
all structure

check button RNA editing frequencies across three data sets.
boxplot

check buttonThe number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
boxplot

check button RNA A-to-I editing events in AD.
ADediting_1252800(24706655, -), ADediting_1252801(24706667, -), ADediting_1252802(24706668, -), ADediting_1252803(24706677, -), ADediting_1252804(24706694, -), ADediting_1252805(24706746, -), ADediting_1252806(24707419, -), ADediting_1252807(24707432, -), ADediting_1252808(24707440, -), ADediting_1252809(24707448, -), ADediting_1252810(24707514, -), ADediting_1252811(24707522, -), ADediting_1252812(24707541, -), ADediting_1252813(24707558, -), ADediting_1252814(24707562, -), ADediting_1252815(24707606, -), ADediting_1252816(24707607, -), ADediting_1252817(24707630, -), ADediting_1252818(24707747, -), ADediting_1252819(24707759, -), ADediting_1252820(24707760, -), ADediting_1252821(24707764, -), ADediting_1252822(24707814, -), ADediting_1252823(24707830, -), ADediting_1252824(24707889, -), ADediting_1252825(24707899, -), ADediting_1252826(24707911, -), ADediting_1252827(24708452, -), ADediting_1252828(24708476, -), ADediting_1252829(24708494, -), ADediting_1252830(24708498, -), ADediting_1252831(24708502, -), ADediting_1252832(24708526, -), ADediting_1252833(24708541, -), ADediting_1252834(24708593, -), ADediting_1252835(24708610, -), ADediting_1252836(24708611, -), ADediting_1252837(24710358, -), ADediting_1252838(24710362, -), ADediting_1252839(24710363, -), ADediting_1252840(24710374, -), ADediting_1252841(24710375, -), ADediting_1252842(24710377, -), ADediting_1252843(24710381, -), ADediting_1252844(24710387, -), ADediting_1252845(24710394, -), ADediting_1252846(24710398, -), ADediting_1252847(24710429, -), ADediting_1252848(24710437, -), ADediting_1252849(24710441, -), ADediting_1252850(24710442, -), ADediting_1252851(24710446, -), ADediting_1252852(24710458, -), ADediting_1252853(24710461, -), ADediting_1252854(24710462, -), ADediting_1252855(24710463, -), ADediting_1252856(24710467, -), ADediting_1252857(24710482, -), ADediting_1252858(24710496, -), ADediting_1252859(24710501, -), ADediting_1252860(24710510, -), ADediting_1252861(24710515, -), ADediting_1252862(24710530, -), ADediting_1252863(24710536, -), ADediting_1252864(24710537, -), ADediting_1252865(24710545, -), ADediting_1252866(24710754, -), ADediting_1252867(24710755, -), ADediting_1252868(24710781, -), ADediting_1252869(24710794, -), ADediting_1252870(24710827, -), ADediting_1252871(24710848, -), ADediting_1252872(24710868, -), ADediting_1252873(24710880, -), ADediting_1252874(24710891, -), ADediting_1252875(24710892, -), ADediting_1252876(24710897, -), ADediting_1252877(24710909, -), ADediting_1252878(24710916, -), ADediting_1252879(24710923, -), ADediting_1252880(24710930, -), ADediting_1252881(24710935, -), ADediting_1252882(24710948, -), ADediting_1252883(24710954, -), ADediting_1252884(24710959, -), ADediting_1252885(24710970, -), ADediting_1252886(24710978, -), ADediting_1252887(24712167, -), ADediting_1252888(24712225, -), ADediting_1252889(24712512, -), ADediting_1252890(24712585, -), ADediting_1252891(24712586, -), ADediting_1252892(24712651, -), ADediting_1252893(24712677, -), ADediting_1252894(24713177, -), ADediting_1252895(24713188, -), ADediting_1252896(24714688, -), ADediting_1252897(24714689, -), ADediting_1252898(24714753, -), ADediting_1252899(24714754, -), ADediting_1252900(24714780, -), ADediting_1252901(24714812, -), ADediting_1252902(24714832, -), ADediting_1252903(24714846, -), ADediting_1252904(24715629, -), ADediting_1252905(24715726, -), ADediting_1252906(24715736, -), ADediting_1252907(24715748, -), ADediting_1252908(24715764, -), ADediting_1252909(24715811, -), ADediting_1252910(24715818, -), ADediting_1252911(24717597, -), ADediting_1583300(24706691, -), ADediting_1583301(24710318, -), ADediting_1583302(24710742, -), ADediting_1583303(24710795, -), ADediting_1583304(24710796, -), ADediting_1583305(24710833, -), ADediting_1583306(24711584, -), ADediting_1583307(24712214, -), ADediting_1583308(24712426, -), ADediting_1583309(24712503, -), ADediting_1583310(24712506, -), ADediting_1583311(24712685, -), ADediting_1661115(24707529, -), ADediting_1661116(24707632, -), ADediting_1661117(24708539, -), ADediting_1661118(24708542, -), ADediting_1661119(24715604, -), ADediting_1661120(24715630, -), ADediting_1661121(24715642, -), ADediting_1661122(24715765, -),

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RNA editing positional annotations for C6orf62 using Annovar

check button Protein coding RNA editing(s).
ADeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
ADeditome IDPositionVariant type
ADediting_1252800chr6_24706655_-intronic
ADediting_1252801chr6_24706667_-intronic
ADediting_1252802chr6_24706668_-intronic
ADediting_1252803chr6_24706677_-intronic
ADediting_1252804chr6_24706694_-intronic
ADediting_1252805chr6_24706746_-intronic
ADediting_1252806chr6_24707419_-intronic
ADediting_1252807chr6_24707432_-intronic
ADediting_1252808chr6_24707440_-intronic
ADediting_1252809chr6_24707448_-intronic
ADediting_1252810chr6_24707514_-intronic
ADediting_1252811chr6_24707522_-intronic
ADediting_1252812chr6_24707541_-intronic
ADediting_1252813chr6_24707558_-intronic
ADediting_1252814chr6_24707562_-intronic
ADediting_1252815chr6_24707606_-intronic
ADediting_1252816chr6_24707607_-intronic
ADediting_1252817chr6_24707630_-intronic
ADediting_1252818chr6_24707747_-intronic
ADediting_1252819chr6_24707759_-intronic
ADediting_1252820chr6_24707760_-intronic
ADediting_1252821chr6_24707764_-intronic
ADediting_1252822chr6_24707814_-intronic
ADediting_1252823chr6_24707830_-intronic
ADediting_1252824chr6_24707889_-intronic
ADediting_1252825chr6_24707899_-intronic
ADediting_1252826chr6_24707911_-intronic
ADediting_1252827chr6_24708452_-intronic
ADediting_1252828chr6_24708476_-intronic
ADediting_1252829chr6_24708494_-intronic
ADediting_1252830chr6_24708498_-intronic
ADediting_1252831chr6_24708502_-intronic
ADediting_1252832chr6_24708526_-intronic
ADediting_1252833chr6_24708541_-intronic
ADediting_1252834chr6_24708593_-intronic
ADediting_1252835chr6_24708610_-intronic
ADediting_1252836chr6_24708611_-intronic
ADediting_1252837chr6_24710358_-intronic
ADediting_1252838chr6_24710362_-intronic
ADediting_1252839chr6_24710363_-intronic
ADediting_1252840chr6_24710374_-intronic
ADediting_1252841chr6_24710375_-intronic
ADediting_1252842chr6_24710377_-intronic
ADediting_1252843chr6_24710381_-intronic
ADediting_1252844chr6_24710387_-intronic
ADediting_1252845chr6_24710394_-intronic
ADediting_1252846chr6_24710398_-intronic
ADediting_1252847chr6_24710429_-intronic
ADediting_1252848chr6_24710437_-intronic
ADediting_1252849chr6_24710441_-intronic
ADediting_1252850chr6_24710442_-intronic
ADediting_1252851chr6_24710446_-intronic
ADediting_1252852chr6_24710458_-intronic
ADediting_1252853chr6_24710461_-intronic
ADediting_1252854chr6_24710462_-intronic
ADediting_1252855chr6_24710463_-intronic
ADediting_1252856chr6_24710467_-intronic
ADediting_1252857chr6_24710482_-intronic
ADediting_1252858chr6_24710496_-intronic
ADediting_1252859chr6_24710501_-intronic
ADediting_1252860chr6_24710510_-intronic
ADediting_1252861chr6_24710515_-intronic
ADediting_1252862chr6_24710530_-intronic
ADediting_1252863chr6_24710536_-intronic
ADediting_1252864chr6_24710537_-intronic
ADediting_1252865chr6_24710545_-intronic
ADediting_1252866chr6_24710754_-intronic
ADediting_1252867chr6_24710755_-intronic
ADediting_1252868chr6_24710781_-intronic
ADediting_1252869chr6_24710794_-intronic
ADediting_1252870chr6_24710827_-intronic
ADediting_1252871chr6_24710848_-intronic
ADediting_1252872chr6_24710868_-intronic
ADediting_1252873chr6_24710880_-intronic
ADediting_1252874chr6_24710891_-intronic
ADediting_1252875chr6_24710892_-intronic
ADediting_1252876chr6_24710897_-intronic
ADediting_1252877chr6_24710909_-intronic
ADediting_1252878chr6_24710916_-intronic
ADediting_1252879chr6_24710923_-intronic
ADediting_1252880chr6_24710930_-intronic
ADediting_1252881chr6_24710935_-intronic
ADediting_1252882chr6_24710948_-intronic
ADediting_1252883chr6_24710954_-intronic
ADediting_1252884chr6_24710959_-intronic
ADediting_1252885chr6_24710970_-intronic
ADediting_1252886chr6_24710978_-intronic
ADediting_1252887chr6_24712167_-intronic
ADediting_1252888chr6_24712225_-intronic
ADediting_1252889chr6_24712512_-intronic
ADediting_1252890chr6_24712585_-intronic
ADediting_1252891chr6_24712586_-intronic
ADediting_1252892chr6_24712651_-intronic
ADediting_1252893chr6_24712677_-intronic
ADediting_1252894chr6_24713177_-intronic
ADediting_1252895chr6_24713188_-intronic
ADediting_1252896chr6_24714688_-intronic
ADediting_1252897chr6_24714689_-intronic
ADediting_1252898chr6_24714753_-intronic
ADediting_1252899chr6_24714754_-intronic
ADediting_1252900chr6_24714780_-intronic
ADediting_1252901chr6_24714812_-intronic
ADediting_1252902chr6_24714832_-intronic
ADediting_1252903chr6_24714846_-intronic
ADediting_1252904chr6_24715629_-intronic
ADediting_1252905chr6_24715726_-intronic
ADediting_1252906chr6_24715736_-intronic
ADediting_1252907chr6_24715748_-intronic
ADediting_1252908chr6_24715764_-intronic
ADediting_1252909chr6_24715811_-intronic
ADediting_1252910chr6_24715818_-intronic
ADediting_1252911chr6_24717597_-intronic
ADediting_1583300chr6_24706691_-intronic
ADediting_1583301chr6_24710318_-intronic
ADediting_1583302chr6_24710742_-intronic
ADediting_1583303chr6_24710795_-intronic
ADediting_1583304chr6_24710796_-intronic
ADediting_1583305chr6_24710833_-intronic
ADediting_1583306chr6_24711584_-intronic
ADediting_1583307chr6_24712214_-intronic
ADediting_1583308chr6_24712426_-intronic
ADediting_1583309chr6_24712503_-intronic
ADediting_1583310chr6_24712506_-intronic
ADediting_1583311chr6_24712685_-intronic
ADediting_1661115chr6_24707529_-intronic
ADediting_1661116chr6_24707632_-intronic
ADediting_1661117chr6_24708539_-intronic
ADediting_1661118chr6_24708542_-intronic
ADediting_1661119chr6_24715604_-intronic
ADediting_1661120chr6_24715630_-intronic
ADediting_1661121chr6_24715642_-intronic
ADediting_1661122chr6_24715765_-intronic

check button Repat-regional RNA editing(s).
ADeditome IDPositionRepeat familyRepeat sub familyRepeat name
ADediting_1252800chr6_24706655_-SINEAluName=AluJb
ADediting_1252801chr6_24706667_-SINEAluName=AluJb
ADediting_1252802chr6_24706668_-SINEAluName=AluJb
ADediting_1252803chr6_24706677_-SINEAluName=AluJb
ADediting_1252804chr6_24706694_-SINEAluName=AluJb
ADediting_1252805chr6_24706746_-SINEAluName=AluJb
ADediting_1252806chr6_24707419_-SINEAluName=AluJr4
ADediting_1252807chr6_24707432_-SINEAluName=AluJr4
ADediting_1252808chr6_24707440_-SINEAluName=AluJr4
ADediting_1252809chr6_24707448_-SINEAluName=AluJr4
ADediting_1252810chr6_24707514_-SINEAluName=AluJr4
ADediting_1252811chr6_24707522_-SINEAluName=AluJr4
ADediting_1252812chr6_24707541_-SINEAluName=AluJr4
ADediting_1252813chr6_24707558_-SINEAluName=AluJr4
ADediting_1252814chr6_24707562_-SINEAluName=AluJr4
ADediting_1252815chr6_24707606_-SINEAluName=AluJr4
ADediting_1252816chr6_24707607_-SINEAluName=AluJr4
ADediting_1252817chr6_24707630_-SINEAluName=AluJr4
ADediting_1252818chr6_24707747_-SINEAluName=AluY
ADediting_1252819chr6_24707759_-SINEAluName=AluY
ADediting_1252820chr6_24707760_-SINEAluName=AluY
ADediting_1252821chr6_24707764_-SINEAluName=AluY
ADediting_1252822chr6_24707814_-SINEAluName=AluY
ADediting_1252823chr6_24707830_-SINEAluName=AluY
ADediting_1252824chr6_24707889_-SINEAluName=AluY
ADediting_1252825chr6_24707899_-SINEAluName=AluY
ADediting_1252826chr6_24707911_-SINEAluName=AluY
ADediting_1252827chr6_24708452_-SINEAluName=AluJr
ADediting_1252828chr6_24708476_-SINEAluName=AluJr
ADediting_1252829chr6_24708494_-SINEAluName=AluJr
ADediting_1252830chr6_24708498_-SINEAluName=AluJr
ADediting_1252831chr6_24708502_-SINEAluName=AluJr
ADediting_1252832chr6_24708526_-SINEAluName=AluJr
ADediting_1252833chr6_24708541_-SINEAluName=AluJr
ADediting_1252834chr6_24708593_-SINEAluName=AluJr
ADediting_1252835chr6_24708610_-SINEAluName=AluJr
ADediting_1252836chr6_24708611_-SINEAluName=AluJr
ADediting_1252837chr6_24710358_-SINEAluName=AluSp
ADediting_1252838chr6_24710362_-SINEAluName=AluSp
ADediting_1252839chr6_24710363_-SINEAluName=AluSp
ADediting_1252840chr6_24710374_-SINEAluName=AluSp
ADediting_1252841chr6_24710375_-SINEAluName=AluSp
ADediting_1252842chr6_24710377_-SINEAluName=AluSp
ADediting_1252843chr6_24710381_-SINEAluName=AluSp
ADediting_1252844chr6_24710387_-SINEAluName=AluSp
ADediting_1252845chr6_24710394_-SINEAluName=AluSp
ADediting_1252846chr6_24710398_-SINEAluName=AluSp
ADediting_1252847chr6_24710429_-SINEAluName=AluSp
ADediting_1252848chr6_24710437_-SINEAluName=AluSp
ADediting_1252849chr6_24710441_-SINEAluName=AluSp
ADediting_1252850chr6_24710442_-SINEAluName=AluSp
ADediting_1252851chr6_24710446_-SINEAluName=AluSp
ADediting_1252852chr6_24710458_-SINEAluName=AluSp
ADediting_1252853chr6_24710461_-SINEAluName=AluSp
ADediting_1252854chr6_24710462_-SINEAluName=AluSp
ADediting_1252855chr6_24710463_-SINEAluName=AluSp
ADediting_1252856chr6_24710467_-SINEAluName=AluSp
ADediting_1252857chr6_24710482_-SINEAluName=AluSp
ADediting_1252858chr6_24710496_-SINEAluName=AluSp
ADediting_1252859chr6_24710501_-SINEAluName=AluSp
ADediting_1252860chr6_24710510_-SINEAluName=AluSp
ADediting_1252861chr6_24710515_-SINEAluName=AluSp
ADediting_1252862chr6_24710530_-SINEAluName=AluSp
ADediting_1252863chr6_24710536_-SINEAluName=AluSp
ADediting_1252864chr6_24710537_-SINEAluName=AluSp
ADediting_1252865chr6_24710545_-SINEAluName=AluSp
ADediting_1252866chr6_24710754_-SINEAluName=AluJr
ADediting_1252867chr6_24710755_-SINEAluName=AluJr
ADediting_1252868chr6_24710781_-SINEAluName=AluJr
ADediting_1252869chr6_24710794_-SINEAluName=AluJr
ADediting_1252870chr6_24710827_-SINEAluName=AluJr
ADediting_1252871chr6_24710848_-SINEAluName=AluJr
ADediting_1252872chr6_24710868_-SINEAluName=AluJr
ADediting_1252873chr6_24710880_-SINEAluName=AluJr
ADediting_1252874chr6_24710891_-SINEAluName=AluJr
ADediting_1252875chr6_24710892_-SINEAluName=AluJr
ADediting_1252876chr6_24710897_-SINEAluName=AluJr
ADediting_1252877chr6_24710909_-SINEAluName=AluJr
ADediting_1252878chr6_24710916_-SINEAluName=AluJr
ADediting_1252879chr6_24710923_-SINEAluName=AluJr
ADediting_1252880chr6_24710930_-SINEAluName=AluJr
ADediting_1252881chr6_24710935_-SINEAluName=AluJr
ADediting_1252882chr6_24710948_-SINEAluName=AluJr
ADediting_1252883chr6_24710954_-SINEAluName=AluJr
ADediting_1252884chr6_24710959_-SINEAluName=AluJr
ADediting_1252885chr6_24710970_-SINEAluName=AluJr
ADediting_1252886chr6_24710978_-SINEAluName=AluJr
ADediting_1252887chr6_24712167_-SINEAluName=AluSz6
ADediting_1252888chr6_24712225_-SINEAluName=AluSz6
ADediting_1252889chr6_24712512_-SINEAluName=AluSc
ADediting_1252890chr6_24712585_-SINEAluName=AluSc
ADediting_1252891chr6_24712586_-SINEAluName=AluSc
ADediting_1252892chr6_24712651_-SINEAluName=AluSc
ADediting_1252893chr6_24712677_-SINEAluName=AluSc
ADediting_1252894chr6_24713177_-DNATcMar-TiggerName=Tigger5b
ADediting_1252895chr6_24713188_-DNATcMar-TiggerName=Tigger5b
ADediting_1252896chr6_24714688_-SINEAluName=AluSx
ADediting_1252897chr6_24714689_-SINEAluName=AluSx
ADediting_1252898chr6_24714753_-SINEAluName=AluSx
ADediting_1252899chr6_24714754_-SINEAluName=AluSx
ADediting_1252900chr6_24714780_-SINEAluName=AluSx
ADediting_1252901chr6_24714812_-SINEAluName=AluSx
ADediting_1252902chr6_24714832_-SINEAluName=AluSx
ADediting_1252903chr6_24714846_-SINEAluName=AluSx
ADediting_1252904chr6_24715629_-SINEAluName=AluSz6
ADediting_1252905chr6_24715726_-SINEAluName=AluSz6
ADediting_1252906chr6_24715736_-SINEAluName=AluSz6
ADediting_1252907chr6_24715748_-SINEAluName=AluSz6
ADediting_1252908chr6_24715764_-SINEAluName=AluSz6
ADediting_1252909chr6_24715811_-SINEAluName=AluSz6
ADediting_1252910chr6_24715818_-SINEAluName=AluSz6
ADediting_1252911chr6_24717597_-SINEAluName=AluJo
ADediting_1583300chr6_24706691_-SINEAluName=AluJb
ADediting_1583301chr6_24710318_-SINEAluName=AluSp
ADediting_1583302chr6_24710742_-SINEAluName=AluJr
ADediting_1583303chr6_24710795_-SINEAluName=AluJr
ADediting_1583304chr6_24710796_-SINEAluName=AluJr
ADediting_1583305chr6_24710833_-SINEAluName=AluJr
ADediting_1583306chr6_24711584_-SINEAluName=AluJo
ADediting_1583307chr6_24712214_-SINEAluName=AluSz6
ADediting_1583308chr6_24712426_-SINEAluName=AluSc
ADediting_1583309chr6_24712503_-SINEAluName=AluSc
ADediting_1583310chr6_24712506_-SINEAluName=AluSc
ADediting_1583311chr6_24712685_-SINEAluName=AluSc
ADediting_1661115chr6_24707529_-SINEAluName=AluJr4
ADediting_1661116chr6_24707632_-SINEAluName=AluJr4
ADediting_1661117chr6_24708539_-SINEAluName=AluJr
ADediting_1661118chr6_24708542_-SINEAluName=AluJr
ADediting_1661119chr6_24715604_-SINEAluName=AluSz6
ADediting_1661120chr6_24715630_-SINEAluName=AluSz6
ADediting_1661121chr6_24715642_-SINEAluName=AluSz6
ADediting_1661122chr6_24715765_-SINEAluName=AluSz6

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RNA A-to-I editing events in the alternative splicing sites for C6orf62

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeADeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
A3SSADediting_1252805chr6_24706746_-24706742:247067643ss2iAATTTTTATATTTTTTGTAGAGA6.11AATTTTTATATTTTTTGTGGAGA-1.84
A3SSADediting_1252886chr6_24710978_-24710962:247109843ss14iGGTATTACTCTGTCATCCAGGCT3.56GGTATTGCTCTGTCATCCAGGCT4.50
ESADediting_1252805chr6_24706746_-24706742:247067643ss2iAATTTTTATATTTTTTGTAGAGA6.11AATTTTTATATTTTTTGTGGAGA-1.84
ESADediting_1252888chr6_24712225_-24712210:247122323ss13iTTTTTGTATTTTTTTTGTAGAGA8.20TTTTTGTGTTTTTTTTGTAGAGA9.60
ESADediting_1252858chr6_24710496_-24710489:247104975ss2eGAGGTCGGG1.63GGGGTCGGG-4.52
ESADediting_1252872chr6_24710868_-24710861:247108695ss2eCAGGTGTGC6.46CGGGTGTGC4.15
ESADediting_1252872chr6_24710868_-24710861:247108695ss2eCAGGTGTGC6.46CGGGTGTGC4.15
ESADediting_1252872chr6_24710868_-24710861:247108695ss2eCAGGTGTGC6.46CGGGTGTGC4.15
ESADediting_1252872chr6_24710868_-24710861:247108695ss2eCAGGTGTGC6.46CGGGTGTGC4.15
ESADediting_1252872chr6_24710868_-24710861:247108695ss2eCAGGTGTGC6.46CGGGTGTGC4.15
ESADediting_1252872chr6_24710868_-24710861:247108695ss2eCAGGTGTGC6.46CGGGTGTGC4.15
ESADediting_1252872chr6_24710868_-24710861:247108695ss2eCAGGTGTGC6.46CGGGTGTGC4.15
ME1ADediting_1252872chr6_24710868_-24710861:247108695ss2eCAGGTGTGC6.46CGGGTGTGC4.15
ME1ADediting_1252872chr6_24710868_-24710861:247108695ss2eCAGGTGTGC6.46CGGGTGTGC4.15
ME1ADediting_1252872chr6_24710868_-24710861:247108695ss2eCAGGTGTGC6.46CGGGTGTGC4.15
ME2ADediting_1252858chr6_24710496_-24710489:247104975ss2eGAGGTCGGG1.63GGGGTCGGG-4.52
ME2ADediting_1252858chr6_24710496_-24710489:247104975ss2eGAGGTCGGG1.63GGGGTCGGG-4.52
ME2ADediting_1252858chr6_24710496_-24710489:247104975ss2eGAGGTCGGG1.63GGGGTCGGG-4.52
ME2ADediting_1252872chr6_24710868_-24710861:247108695ss2eCAGGTGTGC6.46CGGGTGTGC4.15
ME2ADediting_1252872chr6_24710868_-24710861:247108695ss2eCAGGTGTGC6.46CGGGTGTGC4.15

check button Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for C6orf62

check button Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

check button Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.
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check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
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check button - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
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ADeditome IDChrPositoingSkipped exonENSGENSTs

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Protein coding region RNA A-to-I editings for C6orf62

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for C6orf62


check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_107020chr1_37500952_-ENSG00000112308.13ENST00000378119.9C6orf62-202hsa-miR-5581-3pchr624705936247059427mer-m82470593524705958143-13.56

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_843620chr2_207754818_+ENSG00000112308.13ENST00000378119.9C6orf62-202hsa-miR-4775chr624705159247051668mer-1a2470515924705181148-5.57
ADediting_98288chr1_32086990_+ENSG00000112308.13ENST00000378119.9C6orf62-202hsa-miR-5585-3pchr624704875247048817mer-m82470487424704897154-20.43
ADediting_98289chr1_32086992_+ENSG00000112308.13ENST00000378119.9C6orf62-202hsa-miR-5585-3pchr624704875247048817mer-m82470487424704897154-20.43

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for C6orf62

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in miRNA.
ADeditom_IDENSTmir_IDEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in mRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in lncRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for C6orf62

check button Correlation between ADAR gene expression and RNA editing frequency
TissueADeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
CERADediting_1252837chr6_24710358_-2.34073970807391e-050.3379581646305030.0003763405262551180.2866385788119350.03060618004212650.176626443127386
CERADediting_1252845chr6_24710394_-9.98599417721844e-050.3123214491570837.9189244683826e-050.3165779348925330.1559054002358570.116438654292955
CERADediting_1252854chr6_24710462_-1.41793254330477e-060.3819173430125460.0001120627845762950.3101814079468480.4408261670902740.0634024980947296
CERADediting_1252874chr6_24710891_-0.0001224134823293480.3085304266258580.002175863495384810.2484087757974310.866024305313506-0.0138906979801878
DLPFCADediting_1252876chr6_24710897_-7.39109893527174e-100.3405864207181821.36963530992398e-070.2938297527789110.01122041504524990.143852692823879
CERADediting_1252876chr6_24710897_-4.33335027177123e-070.3987254574849630.001022666043865220.2655455188347220.8170368369387950.0190479170062019
TCXADediting_1252876chr6_24710897_-8.84814748658381e-050.314549664663480.00404725937826240.2334002554143760.280932078390786-0.0886048749908205
CERADediting_1252878chr6_24710916_-7.21594774775283e-050.3182662093492060.002002614365970390.250349003134760.6375518172819380.0387770704717817
CERADediting_1252879chr6_24710923_-7.62905325052697e-070.3908215035644618.16983750499757e-060.3552341106092160.347830066527053-0.0771844940831323
CERADediting_1252895chr6_24713188_-1.15330670952051e-060.3849139851814480.0007283084829701820.2728968001621730.1458145577284990.119330897595936

check button Correlation between ADAR gene expression and this gene's expression
TissueADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
DLPFC4.45465000901301e-380.6464898016394152.03108542001175e-310.5977766218735820.008402827435511950.149445170541597
AC3.30033570460554e-480.7594508128754582.44825289709606e-250.5950454017791081.5329230441789e-290.634252627326361
PCC3.28789347380601e-180.5751098453536341.59852191904379e-150.534793053335960.0001782071401465240.267981959340235
CER4.21271963724527e-140.5663974968460386.79873587340016e-050.3193425624219891.9605071815747e-050.340939879708341
TCX1.8409848644441e-250.722160268911477.17961426705436e-050.3183575966327671.29619265818835e-060.383223256928631
FP3.12310934160728e-190.6060903007744921.5927321252386e-140.5342341464757160.0003109299832205240.267232978064417
IFG0.001482312869254670.6011396603889880.09095681342249820.3452635622549090.04484499483914770.404592160913447
PG4.38624234256549e-450.812987478571213.11534064184779e-230.6446728536013760.5528291337923330.0437937841305502
STG1.24191411066633e-140.7195862038322786.70052763953759e-100.6110598198519630.3667285873933620.0997322534918554

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Relation with AD stages for C6orf62

check button Correlation between AD stages and RNA editing frequency
TissueADeditomIDpositionP-valCoeff.
IFGADediting_1252837chr6_24710358_-0.0256158883730834-0.445530009395941
IFGADediting_1252878chr6_24710916_-0.03547133699799280.422303326441651

check button Correlation between AD stages and this gene's expression
TissueP-valCoeff.
TCX0.0001353777343003820.362307193071263

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RelatedDrugs for C6orf62

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for C6orf62

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource