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Center for Computational Systems Medicine
Soverview

Gene summary

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RNA A-to-I events

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Differntial gene expression between RNA A-to-I edited versus non-edited samples

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Protein coding region RNA A-to-I editings

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The effects of the RNA editing to the miRNA binding sites

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The effects of the RNA editing to the stability of the RNA structures

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Relation with ADAR

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Relation with AD stages

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Related drugs with this gene

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Related diseases with this gene


Gene summary for RMI1

check button Gene summary
Gene informationGene symbol

RMI1

Gene ID

80010

Gene nameRecQ mediated genome instability 1
SynonymsBLAP75|C9orf76|FAAP75
Cytomap

9q21.32

Type of geneprotein-coding
DescriptionrecQ-mediated genome instability protein 1BLM-associated polypeptide, 75 kDaBLM-associated protein 75 kDaRMI1, RecQ mediated genome instability 1, homologhomolog of yeast RecQ-mediated genome instability 1 (RMI1)
Modification date20200313
UniProtAcc

Q9H9A7,

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for RMI1

check buttonRNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
all structure

check button RNA editing frequencies across three data sets.
boxplot

check buttonThe number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
boxplot

check button RNA A-to-I editing events in AD.
ADediting_1475735(83987095, +), ADediting_1475736(83987164, +), ADediting_1475737(83987180, +), ADediting_1475738(83987321, +), ADediting_1475739(83988340, +), ADediting_1475740(83989351, +), ADediting_1475741(83989531, +), ADediting_1475742(83989606, +), ADediting_1475743(83990245, +), ADediting_1475744(83990261, +), ADediting_1475745(83990354, +), ADediting_1475746(83990356, +), ADediting_1475747(83990381, +), ADediting_1475748(83990389, +), ADediting_1475749(83990395, +), ADediting_1475750(83990399, +), ADediting_1475751(83990416, +), ADediting_1475752(83990430, +), ADediting_1475753(83990431, +), ADediting_1475754(83990435, +), ADediting_1475755(83998879, +), ADediting_1475756(83999010, +), ADediting_1475757(83999020, +), ADediting_1475758(83999047, +), ADediting_1475759(84003095, +), ADediting_1475760(84003144, +), ADediting_1594211(83982547, +), ADediting_1594212(83982574, +), ADediting_1594213(83988348, +), ADediting_1594214(83988373, +), ADediting_1673746(83988019, +),

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RNA editing positional annotations for RMI1 using Annovar

check button Protein coding RNA editing(s).
ADeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
ADeditome IDPositionVariant type
ADediting_1475735chr9_83987095_+intronic
ADediting_1475736chr9_83987164_+intronic
ADediting_1475737chr9_83987180_+intronic
ADediting_1475738chr9_83987321_+intronic
ADediting_1475739chr9_83988340_+intronic
ADediting_1475740chr9_83989351_+intronic
ADediting_1475741chr9_83989531_+intronic
ADediting_1475742chr9_83989606_+intronic
ADediting_1475743chr9_83990245_+intronic
ADediting_1475744chr9_83990261_+intronic
ADediting_1475745chr9_83990354_+intronic
ADediting_1475746chr9_83990356_+intronic
ADediting_1475747chr9_83990381_+intronic
ADediting_1475748chr9_83990389_+intronic
ADediting_1475749chr9_83990395_+intronic
ADediting_1475750chr9_83990399_+intronic
ADediting_1475751chr9_83990416_+intronic
ADediting_1475752chr9_83990430_+intronic
ADediting_1475753chr9_83990431_+intronic
ADediting_1475754chr9_83990435_+intronic
ADediting_1475755chr9_83998879_+intronic
ADediting_1475756chr9_83999010_+intronic
ADediting_1475757chr9_83999020_+intronic
ADediting_1475758chr9_83999047_+intronic
ADediting_1475759chr9_84003095_+UTR3
ADediting_1475760chr9_84003144_+UTR3
ADediting_1594211chr9_83982547_+intronic
ADediting_1594212chr9_83982574_+intronic
ADediting_1594213chr9_83988348_+intronic
ADediting_1594214chr9_83988373_+intronic
ADediting_1673746chr9_83988019_+intronic

check button Repat-regional RNA editing(s).
ADeditome IDPositionRepeat familyRepeat sub familyRepeat name
ADediting_1475735chr9_83987095_+SINEAluName=AluSx
ADediting_1475736chr9_83987164_+SINEAluName=AluSx
ADediting_1475737chr9_83987180_+SINEAluName=AluSx
ADediting_1475738chr9_83987321_+SINEAluName=AluSx
ADediting_1475739chr9_83988340_+SINEAluName=AluJo
ADediting_1475740chr9_83989351_+LINEL1Name=L1MA4
ADediting_1475741chr9_83989531_+LINEL1Name=L1MA4
ADediting_1475742chr9_83989606_+LINEL1Name=L1MA4
ADediting_1475743chr9_83990245_+SINEAluName=AluSg
ADediting_1475744chr9_83990261_+SINEAluName=AluSg
ADediting_1475745chr9_83990354_+SINEAluName=AluSg
ADediting_1475746chr9_83990356_+SINEAluName=AluSg
ADediting_1475747chr9_83990381_+SINEAluName=AluSg
ADediting_1475748chr9_83990389_+SINEAluName=AluSg
ADediting_1475749chr9_83990395_+SINEAluName=AluSg
ADediting_1475750chr9_83990399_+SINEAluName=AluSg
ADediting_1475751chr9_83990416_+SINEAluName=AluSg
ADediting_1475752chr9_83990430_+SINEAluName=AluSg
ADediting_1475753chr9_83990431_+SINEAluName=AluSg
ADediting_1475754chr9_83990435_+SINEAluName=AluSg
ADediting_1475755chr9_83998879_+SINEAluName=AluSz
ADediting_1475756chr9_83999010_+SINEAluName=AluSz
ADediting_1475757chr9_83999020_+SINEAluName=AluSz
ADediting_1475758chr9_83999047_+SINEAluName=AluSz
ADediting_1475759chr9_84003095_+SINEAluName=AluJr
ADediting_1475760chr9_84003144_+SINEAluName=AluJr
ADediting_1594211chr9_83982547_+SINEAluName=AluY
ADediting_1594212chr9_83982574_+SINEAluName=AluY
ADediting_1594213chr9_83988348_+SINEAluName=AluJo
ADediting_1594214chr9_83988373_+SINEAluName=AluJo
ADediting_1673746chr9_83988019_+SINEAluName=AluJb

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RNA A-to-I editing events in the alternative splicing sites for RMI1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeADeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RMI1

check button Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

check button Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.
boxplot
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
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check button - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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ADeditome IDChrPositoingSkipped exonENSGENSTs