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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for MAP6D1 |
 Gene summary |
| Gene information | Gene symbol | MAP6D1 | Gene ID | 79929 |
| Gene name | MAP6 domain containing 1 | |
| Synonyms | MAPO6D1|SL21 | |
| Cytomap | 3q27.1 | |
| Type of gene | protein-coding | |
| Description | MAP6 domain-containing protein 121 kDa STOP-like proteinSTOP-Like protein 21 kD | |
| Modification date | 20200313 | |
| UniProtAcc | Q9H9H5, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
Top |
RNA A-to-I events for MAP6D1 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA editing frequencies across three data sets. |
 |
| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA A-to-I editing events in AD. |
| ADediting_1044194(183820500, -), ADediting_1044195(183820507, -), ADediting_1044196(183820509, -), ADediting_1044197(183820514, -), ADediting_1044198(183820521, -), ADediting_1044199(183820522, -), ADediting_1044200(183820598, -), ADediting_1044201(183820601, -), ADediting_1044202(183820616, -), ADediting_1044203(183820637, -), ADediting_1044204(183820641, -), ADediting_1044205(183820643, -), ADediting_1044206(183820665, -), ADediting_1044207(183820710, -), ADediting_1044208(183820783, -), ADediting_1044209(183820845, -), ADediting_1044210(183820880, -), ADediting_1044211(183820973, -), ADediting_1044212(183821033, -), ADediting_1044213(183821609, -), ADediting_1044214(183821618, -), ADediting_1044215(183821638, -), ADediting_1044216(183821642, -), ADediting_1044217(183821660, -), ADediting_1044218(183821683, -), ADediting_1044219(183821684, -), ADediting_1044220(183821690, -), ADediting_1044221(183821710, -), ADediting_1044222(183821726, -), ADediting_1044223(183821737, -), ADediting_1044224(183821741, -), ADediting_1044225(183821770, -), ADediting_1044226(183821792, -), ADediting_1044227(183821795, -), ADediting_1044228(183821800, -), ADediting_1044229(183821801, -), ADediting_1044230(183821803, -), ADediting_1044231(183821828, -), ADediting_1044232(183821834, -), ADediting_1044233(183821857, -), ADediting_1044234(183821867, -), ADediting_1044235(183821883, -), ADediting_1044236(183821933, -), ADediting_1044237(183821934, -), ADediting_1044238(183821940, -), ADediting_1044239(183821950, -), ADediting_1044240(183822144, -), ADediting_1044241(183822149, -), ADediting_1044242(183822150, -), ADediting_1044243(183822162, -), ADediting_1044244(183822172, -), ADediting_1044245(183822189, -), ADediting_1044246(183822204, -), ADediting_1044247(183822319, -), ADediting_1044248(183822341, -), ADediting_1044249(183822359, -), ADediting_1044250(183822365, -), ADediting_1044251(183822373, -), ADediting_1044252(183822379, -), ADediting_1044253(183822384, -), ADediting_1044254(183822389, -), ADediting_1044255(183823026, -), ADediting_1044256(183823034, -), ADediting_1044257(183823038, -), ADediting_1044258(183823052, -), ADediting_1044259(183823092, -), ADediting_1044260(183823093, -), ADediting_1044261(183823110, -), ADediting_1044262(183823123, -), ADediting_1044263(183823127, -), ADediting_1044264(183823159, -), ADediting_1044265(183823167, -), ADediting_1044266(183823169, -), ADediting_1044267(183823170, -), ADediting_1044268(183823171, -), ADediting_1044269(183823172, -), ADediting_1044270(183823176, -), ADediting_1044271(183823193, -), ADediting_1044272(183823207, -), ADediting_1044273(183823249, -), ADediting_1044274(183823266, -), ADediting_1044275(183823267, -), ADediting_1044276(183823273, -), ADediting_1044277(183823339, -), ADediting_1044278(183823345, -), ADediting_1044279(183823357, -), ADediting_1044280(183823358, -), ADediting_1044281(183823417, -), ADediting_1044282(183823437, -), ADediting_1044283(183823489, -), ADediting_1044284(183823501, -), ADediting_1044285(183823514, -), ADediting_1044286(183823515, -), ADediting_1044287(183823518, -), ADediting_1044288(183823519, -), ADediting_1044289(183823525, -), ADediting_1044290(183823538, -), ADediting_1044291(183823595, -), ADediting_1044292(183823667, -), ADediting_1044293(183823677, -), ADediting_1044294(183823689, -), ADediting_1044295(183823703, -), ADediting_1044296(183823767, -), ADediting_1573024(183821032, -), ADediting_1573025(183821733, -), ADediting_1573026(183821751, -), ADediting_1573027(183821831, -), ADediting_1573028(183821833, -), ADediting_1573029(183821837, -), ADediting_1573030(183821846, -), ADediting_1573031(183821858, -), ADediting_1573032(183821859, -), ADediting_1573033(183821865, -), ADediting_1573034(183821868, -), ADediting_1573035(183821882, -), ADediting_1573036(183821917, -), ADediting_1573037(183821928, -), ADediting_1573038(183822190, -), ADediting_1573039(183822237, -), ADediting_1573040(183822329, -), ADediting_1573041(183823231, -), ADediting_1573042(183823359, -), ADediting_1573043(183823443, -), ADediting_1573044(183823479, -), ADediting_1573045(183823654, -), ADediting_1573046(183823742, -), |
Top |
RNA editing positional annotations for MAP6D1 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_1044194 | chr3_183820500_- | intronic |
| ADediting_1044195 | chr3_183820507_- | intronic |
| ADediting_1044196 | chr3_183820509_- | intronic |
| ADediting_1044197 | chr3_183820514_- | intronic |
| ADediting_1044198 | chr3_183820521_- | intronic |
| ADediting_1044199 | chr3_183820522_- | intronic |
| ADediting_1044200 | chr3_183820598_- | intronic |
| ADediting_1044201 | chr3_183820601_- | intronic |
| ADediting_1044202 | chr3_183820616_- | intronic |
| ADediting_1044203 | chr3_183820637_- | intronic |
| ADediting_1044204 | chr3_183820641_- | intronic |
| ADediting_1044205 | chr3_183820643_- | intronic |
| ADediting_1044206 | chr3_183820665_- | intronic |
| ADediting_1044207 | chr3_183820710_- | intronic |
| ADediting_1044208 | chr3_183820783_- | intronic |
| ADediting_1044209 | chr3_183820845_- | intronic |
| ADediting_1044210 | chr3_183820880_- | intronic |
| ADediting_1044211 | chr3_183820973_- | intronic |
| ADediting_1044212 | chr3_183821033_- | intronic |
| ADediting_1044213 | chr3_183821609_- | intronic |
| ADediting_1044214 | chr3_183821618_- | intronic |
| ADediting_1044215 | chr3_183821638_- | intronic |
| ADediting_1044216 | chr3_183821642_- | intronic |
| ADediting_1044217 | chr3_183821660_- | intronic |
| ADediting_1044218 | chr3_183821683_- | intronic |
| ADediting_1044219 | chr3_183821684_- | intronic |
| ADediting_1044220 | chr3_183821690_- | intronic |
| ADediting_1044221 | chr3_183821710_- | intronic |
| ADediting_1044222 | chr3_183821726_- | intronic |
| ADediting_1044223 | chr3_183821737_- | intronic |
| ADediting_1044224 | chr3_183821741_- | intronic |
| ADediting_1044225 | chr3_183821770_- | intronic |
| ADediting_1044226 | chr3_183821792_- | intronic |
| ADediting_1044227 | chr3_183821795_- | intronic |
| ADediting_1044228 | chr3_183821800_- | intronic |
| ADediting_1044229 | chr3_183821801_- | intronic |
| ADediting_1044230 | chr3_183821803_- | intronic |
| ADediting_1044231 | chr3_183821828_- | intronic |
| ADediting_1044232 | chr3_183821834_- | intronic |
| ADediting_1044233 | chr3_183821857_- | intronic |
| ADediting_1044234 | chr3_183821867_- | intronic |
| ADediting_1044235 | chr3_183821883_- | intronic |
| ADediting_1044236 | chr3_183821933_- | intronic |
| ADediting_1044237 | chr3_183821934_- | intronic |
| ADediting_1044238 | chr3_183821940_- | intronic |
| ADediting_1044239 | chr3_183821950_- | intronic |
| ADediting_1044240 | chr3_183822144_- | intronic |
| ADediting_1044241 | chr3_183822149_- | intronic |
| ADediting_1044242 | chr3_183822150_- | intronic |
| ADediting_1044243 | chr3_183822162_- | intronic |
| ADediting_1044244 | chr3_183822172_- | intronic |
| ADediting_1044245 | chr3_183822189_- | intronic |
| ADediting_1044246 | chr3_183822204_- | intronic |
| ADediting_1044247 | chr3_183822319_- | intronic |
| ADediting_1044248 | chr3_183822341_- | intronic |
| ADediting_1044249 | chr3_183822359_- | intronic |
| ADediting_1044250 | chr3_183822365_- | intronic |
| ADediting_1044251 | chr3_183822373_- | intronic |
| ADediting_1044252 | chr3_183822379_- | intronic |
| ADediting_1044253 | chr3_183822384_- | intronic |
| ADediting_1044254 | chr3_183822389_- | intronic |
| ADediting_1044255 | chr3_183823026_- | intronic |
| ADediting_1044256 | chr3_183823034_- | intronic |
| ADediting_1044257 | chr3_183823038_- | intronic |
| ADediting_1044258 | chr3_183823052_- | intronic |
| ADediting_1044259 | chr3_183823092_- | intronic |
| ADediting_1044260 | chr3_183823093_- | intronic |
| ADediting_1044261 | chr3_183823110_- | intronic |
| ADediting_1044262 | chr3_183823123_- | intronic |
| ADediting_1044263 | chr3_183823127_- | intronic |
| ADediting_1044264 | chr3_183823159_- | intronic |
| ADediting_1044265 | chr3_183823167_- | intronic |
| ADediting_1044266 | chr3_183823169_- | intronic |
| ADediting_1044267 | chr3_183823170_- | intronic |
| ADediting_1044268 | chr3_183823171_- | intronic |
| ADediting_1044269 | chr3_183823172_- | intronic |
| ADediting_1044270 | chr3_183823176_- | intronic |
| ADediting_1044271 | chr3_183823193_- | intronic |
| ADediting_1044272 | chr3_183823207_- | intronic |
| ADediting_1044273 | chr3_183823249_- | intronic |
| ADediting_1044274 | chr3_183823266_- | intronic |
| ADediting_1044275 | chr3_183823267_- | intronic |
| ADediting_1044276 | chr3_183823273_- | intronic |
| ADediting_1044277 | chr3_183823339_- | intronic |
| ADediting_1044278 | chr3_183823345_- | intronic |
| ADediting_1044279 | chr3_183823357_- | intronic |
| ADediting_1044280 | chr3_183823358_- | intronic |
| ADediting_1044281 | chr3_183823417_- | intronic |
| ADediting_1044282 | chr3_183823437_- | intronic |
| ADediting_1044283 | chr3_183823489_- | intronic |
| ADediting_1044284 | chr3_183823501_- | intronic |
| ADediting_1044285 | chr3_183823514_- | intronic |
| ADediting_1044286 | chr3_183823515_- | intronic |
| ADediting_1044287 | chr3_183823518_- | intronic |
| ADediting_1044288 | chr3_183823519_- | intronic |
| ADediting_1044289 | chr3_183823525_- | intronic |
| ADediting_1044290 | chr3_183823538_- | intronic |
| ADediting_1044291 | chr3_183823595_- | intronic |
| ADediting_1044292 | chr3_183823667_- | intronic |
| ADediting_1044293 | chr3_183823677_- | intronic |
| ADediting_1044294 | chr3_183823689_- | intronic |
| ADediting_1044295 | chr3_183823703_- | intronic |
| ADediting_1044296 | chr3_183823767_- | intronic |
| ADediting_1573024 | chr3_183821032_- | intronic |
| ADediting_1573025 | chr3_183821733_- | intronic |
| ADediting_1573026 | chr3_183821751_- | intronic |
| ADediting_1573027 | chr3_183821831_- | intronic |
| ADediting_1573028 | chr3_183821833_- | intronic |
| ADediting_1573029 | chr3_183821837_- | intronic |
| ADediting_1573030 | chr3_183821846_- | intronic |
| ADediting_1573031 | chr3_183821858_- | intronic |
| ADediting_1573032 | chr3_183821859_- | intronic |
| ADediting_1573033 | chr3_183821865_- | intronic |
| ADediting_1573034 | chr3_183821868_- | intronic |
| ADediting_1573035 | chr3_183821882_- | intronic |
| ADediting_1573036 | chr3_183821917_- | intronic |
| ADediting_1573037 | chr3_183821928_- | intronic |
| ADediting_1573038 | chr3_183822190_- | intronic |
| ADediting_1573039 | chr3_183822237_- | intronic |
| ADediting_1573040 | chr3_183822329_- | intronic |
| ADediting_1573041 | chr3_183823231_- | intronic |
| ADediting_1573042 | chr3_183823359_- | intronic |
| ADediting_1573043 | chr3_183823443_- | intronic |
| ADediting_1573044 | chr3_183823479_- | intronic |
| ADediting_1573045 | chr3_183823654_- | intronic |
| ADediting_1573046 | chr3_183823742_- | intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_1044194 | chr3_183820500_- | SINE | Alu | Name=AluSc |
| ADediting_1044195 | chr3_183820507_- | SINE | Alu | Name=AluSc |
| ADediting_1044196 | chr3_183820509_- | SINE | Alu | Name=AluSc |
| ADediting_1044197 | chr3_183820514_- | SINE | Alu | Name=AluSc |
| ADediting_1044198 | chr3_183820521_- | SINE | Alu | Name=AluSc |
| ADediting_1044199 | chr3_183820522_- | SINE | Alu | Name=AluSc |
| ADediting_1044200 | chr3_183820598_- | SINE | Alu | Name=AluSc |
| ADediting_1044201 | chr3_183820601_- | SINE | Alu | Name=AluSc |
| ADediting_1044202 | chr3_183820616_- | SINE | Alu | Name=AluSc |
| ADediting_1044203 | chr3_183820637_- | SINE | Alu | Name=AluY |
| ADediting_1044204 | chr3_183820641_- | SINE | Alu | Name=AluY |
| ADediting_1044205 | chr3_183820643_- | SINE | Alu | Name=AluY |
| ADediting_1044206 | chr3_183820665_- | SINE | Alu | Name=AluY |
| ADediting_1044207 | chr3_183820710_- | SINE | Alu | Name=AluY |
| ADediting_1044208 | chr3_183820783_- | SINE | Alu | Name=AluY |
| ADediting_1044209 | chr3_183820845_- | SINE | Alu | Name=AluY |
| ADediting_1044210 | chr3_183820880_- | SINE | Alu | Name=AluY |
| ADediting_1044211 | chr3_183820973_- | SINE | Alu | Name=AluSc |
| ADediting_1044212 | chr3_183821033_- | SINE | Alu | Name=AluSc |
| ADediting_1044213 | chr3_183821609_- | SINE | Alu | Name=AluSg |
| ADediting_1044214 | chr3_183821618_- | SINE | Alu | Name=AluSg |
| ADediting_1044215 | chr3_183821638_- | SINE | Alu | Name=AluSg |
| ADediting_1044216 | chr3_183821642_- | SINE | Alu | Name=AluSg |
| ADediting_1044217 | chr3_183821660_- | SINE | Alu | Name=AluSg |
| ADediting_1044218 | chr3_183821683_- | SINE | Alu | Name=AluSg |
| ADediting_1044219 | chr3_183821684_- | SINE | Alu | Name=AluSg |
| ADediting_1044220 | chr3_183821690_- | SINE | Alu | Name=AluSg |
| ADediting_1044221 | chr3_183821710_- | SINE | Alu | Name=AluSg |
| ADediting_1044222 | chr3_183821726_- | SINE | Alu | Name=AluSg |
| ADediting_1044223 | chr3_183821737_- | SINE | Alu | Name=AluSg |
| ADediting_1044224 | chr3_183821741_- | SINE | Alu | Name=AluSg |
| ADediting_1044225 | chr3_183821770_- | SINE | Alu | Name=AluSg |
| ADediting_1044226 | chr3_183821792_- | SINE | Alu | Name=AluSg |
| ADediting_1044227 | chr3_183821795_- | SINE | Alu | Name=AluSg |
| ADediting_1044228 | chr3_183821800_- | SINE | Alu | Name=AluSg |
| ADediting_1044229 | chr3_183821801_- | SINE | Alu | Name=AluSg |
| ADediting_1044230 | chr3_183821803_- | SINE | Alu | Name=AluSg |
| ADediting_1044231 | chr3_183821828_- | SINE | Alu | Name=AluSx |
| ADediting_1044232 | chr3_183821834_- | SINE | Alu | Name=AluSx |
| ADediting_1044233 | chr3_183821857_- | SINE | Alu | Name=AluSx |
| ADediting_1044234 | chr3_183821867_- | SINE | Alu | Name=AluSx |
| ADediting_1044235 | chr3_183821883_- | SINE | Alu | Name=AluSx |
| ADediting_1044236 | chr3_183821933_- | SINE | Alu | Name=AluSx |
| ADediting_1044237 | chr3_183821934_- | SINE | Alu | Name=AluSx |
| ADediting_1044238 | chr3_183821940_- | SINE | Alu | Name=AluSx |
| ADediting_1044239 | chr3_183821950_- | SINE | Alu | Name=AluSx |
| ADediting_1044240 | chr3_183822144_- | SINE | Alu | Name=AluJb |
| ADediting_1044241 | chr3_183822149_- | SINE | Alu | Name=AluJb |
| ADediting_1044242 | chr3_183822150_- | SINE | Alu | Name=AluJb |
| ADediting_1044243 | chr3_183822162_- | SINE | Alu | Name=AluJb |
| ADediting_1044244 | chr3_183822172_- | SINE | Alu | Name=AluJb |
| ADediting_1044245 | chr3_183822189_- | SINE | Alu | Name=AluJb |
| ADediting_1044246 | chr3_183822204_- | SINE | Alu | Name=AluJb |
| ADediting_1044247 | chr3_183822319_- | SINE | Alu | Name=AluJb |
| ADediting_1044248 | chr3_183822341_- | SINE | Alu | Name=AluJb |
| ADediting_1044249 | chr3_183822359_- | SINE | Alu | Name=AluJb |
| ADediting_1044250 | chr3_183822365_- | SINE | Alu | Name=AluJb |
| ADediting_1044251 | chr3_183822373_- | SINE | Alu | Name=AluJb |
| ADediting_1044252 | chr3_183822379_- | SINE | Alu | Name=AluJb |
| ADediting_1044253 | chr3_183822384_- | SINE | Alu | Name=AluJb |
| ADediting_1044254 | chr3_183822389_- | SINE | Alu | Name=AluJb |
| ADediting_1044255 | chr3_183823026_- | SINE | Alu | Name=AluJb |
| ADediting_1044256 | chr3_183823034_- | SINE | Alu | Name=AluJb |
| ADediting_1044257 | chr3_183823038_- | SINE | Alu | Name=AluJb |
| ADediting_1044258 | chr3_183823052_- | SINE | Alu | Name=AluJb |
| ADediting_1044259 | chr3_183823092_- | SINE | Alu | Name=AluJb |
| ADediting_1044260 | chr3_183823093_- | SINE | Alu | Name=AluJb |
| ADediting_1044261 | chr3_183823110_- | SINE | Alu | Name=AluJb |
| ADediting_1044262 | chr3_183823123_- | SINE | Alu | Name=AluJb |
| ADediting_1044263 | chr3_183823127_- | SINE | Alu | Name=AluJb |
| ADediting_1044264 | chr3_183823159_- | SINE | Alu | Name=AluJb |
| ADediting_1044265 | chr3_183823167_- | SINE | Alu | Name=AluJb |
| ADediting_1044266 | chr3_183823169_- | SINE | Alu | Name=AluJb |
| ADediting_1044267 | chr3_183823170_- | SINE | Alu | Name=AluJb |
| ADediting_1044268 | chr3_183823171_- | SINE | Alu | Name=AluJb |
| ADediting_1044269 | chr3_183823172_- | SINE | Alu | Name=AluJb |
| ADediting_1044270 | chr3_183823176_- | SINE | Alu | Name=AluJb |
| ADediting_1044271 | chr3_183823193_- | SINE | Alu | Name=AluJb |
| ADediting_1044272 | chr3_183823207_- | SINE | Alu | Name=AluJb |
| ADediting_1044273 | chr3_183823249_- | SINE | Alu | Name=AluJb |
| ADediting_1044274 | chr3_183823266_- | SINE | Alu | Name=AluJb |
| ADediting_1044275 | chr3_183823267_- | SINE | Alu | Name=AluJb |
| ADediting_1044276 | chr3_183823273_- | SINE | Alu | Name=AluJb |
| ADediting_1044277 | chr3_183823339_- | SINE | Alu | Name=AluSx3 |
| ADediting_1044278 | chr3_183823345_- | SINE | Alu | Name=AluSx3 |
| ADediting_1044279 | chr3_183823357_- | SINE | Alu | Name=AluSx3 |
| ADediting_1044280 | chr3_183823358_- | SINE | Alu | Name=AluSx3 |
| ADediting_1044281 | chr3_183823417_- | SINE | Alu | Name=AluSx3 |
| ADediting_1044282 | chr3_183823437_- | SINE | Alu | Name=AluSx3 |
| ADediting_1044283 | chr3_183823489_- | SINE | Alu | Name=AluSx3 |
| ADediting_1044284 | chr3_183823501_- | SINE | Alu | Name=AluSx3 |
| ADediting_1044285 | chr3_183823514_- | SINE | Alu | Name=AluSx3 |
| ADediting_1044286 | chr3_183823515_- | SINE | Alu | Name=AluSx3 |
| ADediting_1044287 | chr3_183823518_- | SINE | Alu | Name=AluSx3 |
| ADediting_1044288 | chr3_183823519_- | SINE | Alu | Name=AluSx3 |
| ADediting_1044289 | chr3_183823525_- | SINE | Alu | Name=AluSx3 |
| ADediting_1044290 | chr3_183823538_- | SINE | Alu | Name=AluSx3 |
| ADediting_1044291 | chr3_183823595_- | SINE | Alu | Name=AluSx3 |
| ADediting_1044292 | chr3_183823667_- | SINE | Alu | Name=AluSx |
| ADediting_1044293 | chr3_183823677_- | SINE | Alu | Name=AluSx |
| ADediting_1044294 | chr3_183823689_- | SINE | Alu | Name=AluSx |
| ADediting_1044295 | chr3_183823703_- | SINE | Alu | Name=AluSx |
| ADediting_1044296 | chr3_183823767_- | SINE | Alu | Name=AluSx |
| ADediting_1573024 | chr3_183821032_- | SINE | Alu | Name=AluSc |
| ADediting_1573025 | chr3_183821733_- | SINE | Alu | Name=AluSg |
| ADediting_1573026 | chr3_183821751_- | SINE | Alu | Name=AluSg |
| ADediting_1573027 | chr3_183821831_- | SINE | Alu | Name=AluSx |
| ADediting_1573028 | chr3_183821833_- | SINE | Alu | Name=AluSx |
| ADediting_1573029 | chr3_183821837_- | SINE | Alu | Name=AluSx |
| ADediting_1573030 | chr3_183821846_- | SINE | Alu | Name=AluSx |
| ADediting_1573031 | chr3_183821858_- | SINE | Alu | Name=AluSx |
| ADediting_1573032 | chr3_183821859_- | SINE | Alu | Name=AluSx |
| ADediting_1573033 | chr3_183821865_- | SINE | Alu | Name=AluSx |
| ADediting_1573034 | chr3_183821868_- | SINE | Alu | Name=AluSx |
| ADediting_1573035 | chr3_183821882_- | SINE | Alu | Name=AluSx |
| ADediting_1573036 | chr3_183821917_- | SINE | Alu | Name=AluSx |
| ADediting_1573037 | chr3_183821928_- | SINE | Alu | Name=AluSx |
| ADediting_1573038 | chr3_183822190_- | SINE | Alu | Name=AluJb |
| ADediting_1573039 | chr3_183822237_- | SINE | Alu | Name=AluJb |
| ADediting_1573040 | chr3_183822329_- | SINE | Alu | Name=AluJb |
| ADediting_1573041 | chr3_183823231_- | SINE | Alu | Name=AluJb |
| ADediting_1573042 | chr3_183823359_- | SINE | Alu | Name=AluSx3 |
| ADediting_1573043 | chr3_183823443_- | SINE | Alu | Name=AluSx3 |
| ADediting_1573044 | chr3_183823479_- | SINE | Alu | Name=AluSx3 |
| ADediting_1573045 | chr3_183823654_- | SINE | Alu | Name=AluSx |
| ADediting_1573046 | chr3_183823742_- | SINE | Alu | Name=AluSx |
Top |
RNA A-to-I editing events in the alternative splicing sites for MAP6D1 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for MAP6D1 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
Top |
Protein coding region RNA A-to-I editings for MAP6D1 |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for MAP6D1 |
| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000180834.7 | ENST00000318631.7 | MAP6D1-201 | hsa-miR-381-3p | chr3 | 183816018 | 183816024 | 7mer-m8 | 183816017 | 183816039 | 142 | -11.41 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000180834.7 | ENST00000318631.7 | MAP6D1-201 | hsa-miR-641 | chr3 | 183816542 | 183816548 | 7mer-m8 | 183816541 | 183816567 | 141 | -14.23 |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_291761 | chr11_93733708_- | ENSG00000180834.7 | ENST00000318631.7 | MAP6D1-201 | hsa-miR-1304-3p | chr3 | 183816256 | 183816262 | 7mer-1a | 183816256 | 183816277 | 143 | -19.92 |
| Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for MAP6D1 |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for MAP6D1 |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 8.36842852176988e-30 | 0.584571701156524 | 1.33766492740256e-28 | 0.574321328190468 | 2.19842747915146e-21 | 0.504099670196971 |
| AC | 2.28963960154852e-57 | 0.801750282198813 | 7.43614329195014e-61 | 0.815575033806007 | 3.09337717515835e-16 | 0.486165933269463 |
| PCC | 1.02807795014963e-25 | 0.664653004466473 | 1.70877156151277e-30 | 0.709081565837358 | 0.00139199404136636 | 0.229684385698978 |
| CER | 1.31278212983774e-06 | 0.383038592383693 | 0.00101759502434531 | 0.265654671046342 | 0.00114933575839857 | -0.262968257405389 |
| TCX | 0.000188695036298299 | 0.300299663067878 | 0.5885414139769 | -0.0445189710469204 | 6.91543030804256e-16 | 0.597535565473344 |
| FP | 1.11111818526154e-11 | 0.480722056676871 | 2.08729766426954e-12 | 0.495298602406924 | 1.83526955625327e-11 | 0.476209599677488 |
| IFG | 0.421072224052789 | 0.168379095063998 | 0.538149789210704 | -0.129220289759123 | 0.0295900361928043 | 0.435423943501913 |
| PG | 1.0039639261685e-06 | 0.349591459825781 | 0.329866719957542 | 0.0718371032535057 | 2.11147190459884e-14 | 0.522174924776548 |
| STG | 1.00286277387592e-13 | 0.702063502422712 | 3.71944858139288e-05 | 0.433986083963273 | 5.31019864762093e-07 | 0.515225201998945 |
Top |
Relation with AD stages for MAP6D1 |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
Top |
RelatedDrugs for MAP6D1 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for MAP6D1 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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