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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for CPSF7 |
 Gene summary |
| Gene information | Gene symbol | CPSF7 | Gene ID | 79869 |
| Gene name | cleavage and polyadenylation specific factor 7 | |
| Synonyms | CFIm59 | |
| Cytomap | 11q12.2 | |
| Type of gene | protein-coding | |
| Description | cleavage and polyadenylation specificity factor subunit 7CPSF 59 kDa subunitcleavage and polyadenylation specificity factor 59 kDa subunitcleavage factor Im complex 59 kDa subunitpre-mRNA cleavage factor I, 59 kDa subunitpre-mRNA cleavage factor Im 5 | |
| Modification date | 20200313 | |
| UniProtAcc | Q8N684, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
| CPSF7 | GO:0051262 | protein tetramerization | 20695905 |
| CPSF7 | GO:0051290 | protein heterotetramerization | 23187700 |
| CPSF7 | GO:1990120 | messenger ribonucleoprotein complex assembly | 29276085 |
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RNA A-to-I events for CPSF7 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA editing frequencies across three data sets. |
 |
| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA A-to-I editing events in AD. |
| ADediting_260219(61405550, -), ADediting_260220(61405835, -), ADediting_260221(61406773, -), ADediting_260222(61406828, -), ADediting_260223(61406906, -), ADediting_260224(61406916, -), ADediting_260225(61406934, -), ADediting_260226(61406942, -), ADediting_260227(61406956, -), ADediting_260228(61407037, -), ADediting_260229(61407038, -), ADediting_260230(61408142, -), ADediting_260231(61408185, -), ADediting_260232(61408195, -), ADediting_260233(61408213, -), ADediting_260234(61408221, -), ADediting_260235(61408242, -), ADediting_260236(61408256, -), ADediting_260237(61408264, -), ADediting_260238(61408266, -), ADediting_260239(61408357, -), ADediting_260240(61408374, -), ADediting_260241(61408386, -), ADediting_260242(61408914, -), ADediting_260243(61408935, -), ADediting_260244(61408944, -), ADediting_260245(61408961, -), ADediting_260246(61408962, -), ADediting_260247(61408987, -), ADediting_260248(61409018, -), ADediting_260249(61409025, -), ADediting_260250(61409040, -), ADediting_260251(61409058, -), ADediting_260252(61409072, -), ADediting_260253(61409077, -), ADediting_260254(61409123, -), ADediting_260255(61409131, -), ADediting_260256(61409347, -), ADediting_260257(61409388, -), ADediting_260258(61409408, -), ADediting_260259(61409455, -), ADediting_260260(61409717, -), ADediting_260261(61409719, -), ADediting_260262(61409725, -), ADediting_260263(61409731, -), ADediting_260264(61409782, -), ADediting_260265(61409789, -), ADediting_260266(61409791, -), ADediting_260267(61409794, -), ADediting_260268(61409808, -), ADediting_260269(61409811, -), ADediting_260270(61409825, -), ADediting_260271(61409849, -), ADediting_260272(61409851, -), ADediting_260273(61409861, -), ADediting_260274(61409864, -), ADediting_260275(61409873, -), ADediting_260276(61409887, -), ADediting_260277(61409901, -), ADediting_260278(61409907, -), ADediting_260279(61409908, -), ADediting_260280(61409913, -), ADediting_260281(61409918, -), ADediting_260282(61409926, -), ADediting_260283(61409934, -), ADediting_260284(61409962, -), ADediting_260285(61409964, -), ADediting_260286(61409994, -), ADediting_260287(61410002, -), ADediting_260288(61410025, -), ADediting_260289(61410026, -), ADediting_260290(61410030, -), ADediting_260291(61410038, -), ADediting_260292(61410158, -), ADediting_260293(61410190, -), ADediting_260294(61410195, -), ADediting_260295(61410222, -), ADediting_260296(61410226, -), ADediting_260297(61410249, -), ADediting_260298(61410253, -), ADediting_260299(61410255, -), ADediting_260300(61410261, -), ADediting_260301(61410264, -), ADediting_260302(61410267, -), ADediting_260303(61410284, -), ADediting_260304(61410286, -), ADediting_260305(61410288, -), ADediting_260306(61410309, -), ADediting_260307(61410312, -), ADediting_260308(61410316, -), ADediting_260309(61410335, -), ADediting_260310(61410351, -), ADediting_260311(61410359, -), ADediting_260312(61410363, -), ADediting_260313(61410365, -), ADediting_260314(61412324, -), ADediting_260315(61412414, -), ADediting_260316(61412418, -), ADediting_260317(61412428, -), ADediting_260318(61412454, -), ADediting_260319(61412464, -), ADediting_260320(61412510, -), ADediting_260321(61412540, -), ADediting_260322(61412556, -), ADediting_260323(61412561, -), ADediting_260324(61413372, -), ADediting_260325(61413387, -), ADediting_260326(61413388, -), ADediting_260327(61413389, -), ADediting_260328(61413402, -), ADediting_260329(61413414, -), ADediting_260330(61413448, -), ADediting_260331(61413468, -), ADediting_260332(61413483, -), ADediting_260333(61413487, -), ADediting_260334(61413518, -), ADediting_260335(61413523, -), ADediting_260336(61413544, -), ADediting_260337(61413548, -), ADediting_260338(61413553, -), ADediting_260339(61413555, -), ADediting_260340(61413568, -), ADediting_260341(61413569, -), ADediting_260342(61413607, -), ADediting_260343(61413615, -), ADediting_260344(61414313, -), ADediting_260345(61414317, -), ADediting_260346(61414325, -), ADediting_260347(61414326, -), ADediting_260348(61414327, -), ADediting_260349(61414330, -), ADediting_260350(61414332, -), ADediting_260351(61414389, -), ADediting_260352(61414399, -), ADediting_260353(61414421, -), ADediting_260354(61414986, -), ADediting_260355(61414992, -), ADediting_260356(61414993, -), ADediting_260357(61415065, -), ADediting_260358(61415090, -), ADediting_260359(61415114, -), ADediting_260360(61415116, -), ADediting_260361(61415126, -), ADediting_260362(61415176, -), ADediting_260363(61415178, -), ADediting_260364(61415191, -), ADediting_260365(61423059, -), ADediting_260366(61423264, -), ADediting_260367(61423466, -), ADediting_260368(61424545, -), ADediting_260369(61424590, -), ADediting_260370(61424711, -), ADediting_260371(61424725, -), ADediting_260372(61426860, -), ADediting_260373(61426944, -), ADediting_260374(61426945, -), ADediting_260375(61426952, -), ADediting_260376(61426984, -), ADediting_260377(61427164, -), ADediting_260378(61428321, -), ADediting_260379(61428405, -), ADediting_260380(61428428, -), ADediting_260381(61428476, -), ADediting_1527237(61407043, -), ADediting_1527238(61408333, -), ADediting_1527239(61408388, -), ADediting_1527240(61408974, -), ADediting_1527241(61409094, -), ADediting_1527242(61409309, -), ADediting_1527243(61409323, -), ADediting_1527244(61409324, -), ADediting_1527245(61409350, -), ADediting_1527246(61409461, -), ADediting_1527247(61409732, -), ADediting_1527248(61409835, -), ADediting_1527249(61410254, -), ADediting_1527250(61410258, -), ADediting_1527251(61410262, -), ADediting_1527252(61410265, -), ADediting_1527253(61410280, -), ADediting_1527254(61428274, -), ADediting_1610230(61409024, -), ADediting_1610231(61412989, -), ADediting_1610232(61423021, -), ADediting_1610233(61427181, -), ADediting_1610234(61428419, -), |
Top |
RNA editing positional annotations for CPSF7 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_260219 | chr11_61405550_- | intronic |
| ADediting_260220 | chr11_61405835_- | intronic |
| ADediting_260221 | chr11_61406773_- | intronic |
| ADediting_260222 | chr11_61406828_- | intronic |
| ADediting_260223 | chr11_61406906_- | intronic |
| ADediting_260224 | chr11_61406916_- | intronic |
| ADediting_260225 | chr11_61406934_- | intronic |
| ADediting_260226 | chr11_61406942_- | intronic |
| ADediting_260227 | chr11_61406956_- | intronic |
| ADediting_260228 | chr11_61407037_- | intronic |
| ADediting_260229 | chr11_61407038_- | intronic |
| ADediting_260230 | chr11_61408142_- | intronic |
| ADediting_260231 | chr11_61408185_- | intronic |
| ADediting_260232 | chr11_61408195_- | intronic |
| ADediting_260233 | chr11_61408213_- | intronic |
| ADediting_260234 | chr11_61408221_- | intronic |
| ADediting_260235 | chr11_61408242_- | intronic |
| ADediting_260236 | chr11_61408256_- | intronic |
| ADediting_260237 | chr11_61408264_- | intronic |
| ADediting_260238 | chr11_61408266_- | intronic |
| ADediting_260239 | chr11_61408357_- | intronic |
| ADediting_260240 | chr11_61408374_- | intronic |
| ADediting_260241 | chr11_61408386_- | intronic |
| ADediting_260242 | chr11_61408914_- | intronic |
| ADediting_260243 | chr11_61408935_- | intronic |
| ADediting_260244 | chr11_61408944_- | intronic |
| ADediting_260245 | chr11_61408961_- | intronic |
| ADediting_260246 | chr11_61408962_- | intronic |
| ADediting_260247 | chr11_61408987_- | intronic |
| ADediting_260248 | chr11_61409018_- | intronic |
| ADediting_260249 | chr11_61409025_- | intronic |
| ADediting_260250 | chr11_61409040_- | intronic |
| ADediting_260251 | chr11_61409058_- | intronic |
| ADediting_260252 | chr11_61409072_- | intronic |
| ADediting_260253 | chr11_61409077_- | intronic |
| ADediting_260254 | chr11_61409123_- | intronic |
| ADediting_260255 | chr11_61409131_- | intronic |
| ADediting_260256 | chr11_61409347_- | intronic |
| ADediting_260257 | chr11_61409388_- | intronic |
| ADediting_260258 | chr11_61409408_- | intronic |
| ADediting_260259 | chr11_61409455_- | intronic |
| ADediting_260260 | chr11_61409717_- | intronic |
| ADediting_260261 | chr11_61409719_- | intronic |
| ADediting_260262 | chr11_61409725_- | intronic |
| ADediting_260263 | chr11_61409731_- | intronic |
| ADediting_260264 | chr11_61409782_- | intronic |
| ADediting_260265 | chr11_61409789_- | intronic |
| ADediting_260266 | chr11_61409791_- | intronic |
| ADediting_260267 | chr11_61409794_- | intronic |
| ADediting_260268 | chr11_61409808_- | intronic |
| ADediting_260269 | chr11_61409811_- | intronic |
| ADediting_260270 | chr11_61409825_- | intronic |
| ADediting_260271 | chr11_61409849_- | intronic |
| ADediting_260272 | chr11_61409851_- | intronic |
| ADediting_260273 | chr11_61409861_- | intronic |
| ADediting_260274 | chr11_61409864_- | intronic |
| ADediting_260275 | chr11_61409873_- | intronic |
| ADediting_260276 | chr11_61409887_- | intronic |
| ADediting_260277 | chr11_61409901_- | intronic |
| ADediting_260278 | chr11_61409907_- | intronic |
| ADediting_260279 | chr11_61409908_- | intronic |
| ADediting_260280 | chr11_61409913_- | intronic |
| ADediting_260281 | chr11_61409918_- | intronic |
| ADediting_260282 | chr11_61409926_- | intronic |
| ADediting_260283 | chr11_61409934_- | intronic |
| ADediting_260284 | chr11_61409962_- | intronic |
| ADediting_260285 | chr11_61409964_- | intronic |
| ADediting_260286 | chr11_61409994_- | intronic |
| ADediting_260287 | chr11_61410002_- | intronic |
| ADediting_260288 | chr11_61410025_- | intronic |
| ADediting_260289 | chr11_61410026_- | intronic |
| ADediting_260290 | chr11_61410030_- | intronic |
| ADediting_260291 | chr11_61410038_- | intronic |
| ADediting_260292 | chr11_61410158_- | intronic |
| ADediting_260293 | chr11_61410190_- | intronic |
| ADediting_260294 | chr11_61410195_- | intronic |
| ADediting_260295 | chr11_61410222_- | intronic |
| ADediting_260296 | chr11_61410226_- | intronic |
| ADediting_260297 | chr11_61410249_- | intronic |
| ADediting_260298 | chr11_61410253_- | intronic |
| ADediting_260299 | chr11_61410255_- | intronic |
| ADediting_260300 | chr11_61410261_- | intronic |
| ADediting_260301 | chr11_61410264_- | intronic |
| ADediting_260302 | chr11_61410267_- | intronic |
| ADediting_260303 | chr11_61410284_- | intronic |
| ADediting_260304 | chr11_61410286_- | intronic |
| ADediting_260305 | chr11_61410288_- | intronic |
| ADediting_260306 | chr11_61410309_- | intronic |
| ADediting_260307 | chr11_61410312_- | intronic |
| ADediting_260308 | chr11_61410316_- | intronic |
| ADediting_260309 | chr11_61410335_- | intronic |
| ADediting_260310 | chr11_61410351_- | intronic |
| ADediting_260311 | chr11_61410359_- | intronic |
| ADediting_260312 | chr11_61410363_- | intronic |
| ADediting_260313 | chr11_61410365_- | intronic |
| ADediting_260314 | chr11_61412324_- | intronic |
| ADediting_260315 | chr11_61412414_- | intronic |
| ADediting_260316 | chr11_61412418_- | intronic |
| ADediting_260317 | chr11_61412428_- | intronic |
| ADediting_260318 | chr11_61412454_- | intronic |
| ADediting_260319 | chr11_61412464_- | intronic |
| ADediting_260320 | chr11_61412510_- | intronic |
| ADediting_260321 | chr11_61412540_- | intronic |
| ADediting_260322 | chr11_61412556_- | intronic |
| ADediting_260323 | chr11_61412561_- | intronic |
| ADediting_260324 | chr11_61413372_- | intronic |
| ADediting_260325 | chr11_61413387_- | intronic |
| ADediting_260326 | chr11_61413388_- | intronic |
| ADediting_260327 | chr11_61413389_- | intronic |
| ADediting_260328 | chr11_61413402_- | intronic |
| ADediting_260329 | chr11_61413414_- | intronic |
| ADediting_260330 | chr11_61413448_- | intronic |
| ADediting_260331 | chr11_61413468_- | intronic |
| ADediting_260332 | chr11_61413483_- | intronic |
| ADediting_260333 | chr11_61413487_- | intronic |
| ADediting_260334 | chr11_61413518_- | intronic |
| ADediting_260335 | chr11_61413523_- | intronic |
| ADediting_260336 | chr11_61413544_- | intronic |
| ADediting_260337 | chr11_61413548_- | intronic |
| ADediting_260338 | chr11_61413553_- | intronic |
| ADediting_260339 | chr11_61413555_- | intronic |
| ADediting_260340 | chr11_61413568_- | intronic |
| ADediting_260341 | chr11_61413569_- | intronic |
| ADediting_260342 | chr11_61413607_- | intronic |
| ADediting_260343 | chr11_61413615_- | intronic |
| ADediting_260344 | chr11_61414313_- | intronic |
| ADediting_260345 | chr11_61414317_- | intronic |
| ADediting_260346 | chr11_61414325_- | intronic |
| ADediting_260347 | chr11_61414326_- | intronic |
| ADediting_260348 | chr11_61414327_- | intronic |
| ADediting_260349 | chr11_61414330_- | intronic |
| ADediting_260350 | chr11_61414332_- | intronic |
| ADediting_260351 | chr11_61414389_- | intronic |
| ADediting_260352 | chr11_61414399_- | intronic |
| ADediting_260353 | chr11_61414421_- | intronic |
| ADediting_260354 | chr11_61414986_- | intronic |
| ADediting_260355 | chr11_61414992_- | intronic |
| ADediting_260356 | chr11_61414993_- | intronic |
| ADediting_260357 | chr11_61415065_- | intronic |
| ADediting_260358 | chr11_61415090_- | intronic |
| ADediting_260359 | chr11_61415114_- | intronic |
| ADediting_260360 | chr11_61415116_- | intronic |
| ADediting_260361 | chr11_61415126_- | intronic |
| ADediting_260362 | chr11_61415176_- | intronic |
| ADediting_260363 | chr11_61415178_- | intronic |
| ADediting_260364 | chr11_61415191_- | intronic |
| ADediting_260365 | chr11_61423059_- | intronic |
| ADediting_260366 | chr11_61423264_- | intronic |
| ADediting_260367 | chr11_61423466_- | intronic |
| ADediting_260368 | chr11_61424545_- | intronic |
| ADediting_260369 | chr11_61424590_- | intronic |
| ADediting_260370 | chr11_61424711_- | intronic |
| ADediting_260371 | chr11_61424725_- | intronic |
| ADediting_260372 | chr11_61426860_- | ncRNA_exonic |
| ADediting_260373 | chr11_61426944_- | ncRNA_exonic |
| ADediting_260374 | chr11_61426945_- | ncRNA_exonic |
| ADediting_260375 | chr11_61426952_- | ncRNA_exonic |
| ADediting_260376 | chr11_61426984_- | ncRNA_exonic |
| ADediting_260377 | chr11_61427164_- | ncRNA_exonic |
| ADediting_260378 | chr11_61428321_- | intronic |
| ADediting_260379 | chr11_61428405_- | intronic |
| ADediting_260380 | chr11_61428428_- | intronic |
| ADediting_260381 | chr11_61428476_- | intronic |
| ADediting_1527237 | chr11_61407043_- | intronic |
| ADediting_1527238 | chr11_61408333_- | intronic |
| ADediting_1527239 | chr11_61408388_- | intronic |
| ADediting_1527240 | chr11_61408974_- | intronic |
| ADediting_1527241 | chr11_61409094_- | intronic |
| ADediting_1527242 | chr11_61409309_- | intronic |
| ADediting_1527243 | chr11_61409323_- | intronic |
| ADediting_1527244 | chr11_61409324_- | intronic |
| ADediting_1527245 | chr11_61409350_- | intronic |
| ADediting_1527246 | chr11_61409461_- | intronic |
| ADediting_1527247 | chr11_61409732_- | intronic |
| ADediting_1527248 | chr11_61409835_- | intronic |
| ADediting_1527249 | chr11_61410254_- | intronic |
| ADediting_1527250 | chr11_61410258_- | intronic |
| ADediting_1527251 | chr11_61410262_- | intronic |
| ADediting_1527252 | chr11_61410265_- | intronic |
| ADediting_1527253 | chr11_61410280_- | intronic |
| ADediting_1527254 | chr11_61428274_- | intronic |
| ADediting_1610230 | chr11_61409024_- | intronic |
| ADediting_1610231 | chr11_61412989_- | intronic |
| ADediting_1610232 | chr11_61423021_- | intronic |
| ADediting_1610233 | chr11_61427181_- | ncRNA_exonic |
| ADediting_1610234 | chr11_61428419_- | intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_260221 | chr11_61406773_- | SINE | Alu | Name=AluJb |
| ADediting_260222 | chr11_61406828_- | SINE | Alu | Name=AluJb |
| ADediting_260223 | chr11_61406906_- | SINE | Alu | Name=AluJb |
| ADediting_260224 | chr11_61406916_- | SINE | Alu | Name=AluJb |
| ADediting_260225 | chr11_61406934_- | SINE | Alu | Name=AluJb |
| ADediting_260226 | chr11_61406942_- | SINE | Alu | Name=AluJb |
| ADediting_260227 | chr11_61406956_- | SINE | Alu | Name=AluJb |
| ADediting_260228 | chr11_61407037_- | SINE | Alu | Name=AluJb |
| ADediting_260229 | chr11_61407038_- | SINE | Alu | Name=AluJb |
| ADediting_260230 | chr11_61408142_- | SINE | Alu | Name=AluY |
| ADediting_260231 | chr11_61408185_- | SINE | Alu | Name=AluY |
| ADediting_260232 | chr11_61408195_- | SINE | Alu | Name=AluY |
| ADediting_260233 | chr11_61408213_- | SINE | Alu | Name=AluY |
| ADediting_260234 | chr11_61408221_- | SINE | Alu | Name=AluY |
| ADediting_260235 | chr11_61408242_- | SINE | Alu | Name=AluY |
| ADediting_260236 | chr11_61408256_- | SINE | Alu | Name=AluY |
| ADediting_260237 | chr11_61408264_- | SINE | Alu | Name=AluY |
| ADediting_260238 | chr11_61408266_- | SINE | Alu | Name=AluY |
| ADediting_260239 | chr11_61408357_- | SINE | Alu | Name=AluY |
| ADediting_260240 | chr11_61408374_- | SINE | Alu | Name=AluY |
| ADediting_260241 | chr11_61408386_- | SINE | Alu | Name=AluY |
| ADediting_260242 | chr11_61408914_- | SINE | Alu | Name=AluJr4 |
| ADediting_260243 | chr11_61408935_- | SINE | Alu | Name=AluJr4 |
| ADediting_260244 | chr11_61408944_- | SINE | Alu | Name=AluJr4 |
| ADediting_260245 | chr11_61408961_- | SINE | Alu | Name=AluJr4 |
| ADediting_260246 | chr11_61408962_- | SINE | Alu | Name=AluJr4 |
| ADediting_260247 | chr11_61408987_- | SINE | Alu | Name=AluJr4 |
| ADediting_260248 | chr11_61409018_- | SINE | Alu | Name=AluJr4 |
| ADediting_260249 | chr11_61409025_- | SINE | Alu | Name=AluJr4 |
| ADediting_260250 | chr11_61409040_- | SINE | Alu | Name=AluJr4 |
| ADediting_260251 | chr11_61409058_- | SINE | Alu | Name=AluJr4 |
| ADediting_260252 | chr11_61409072_- | SINE | Alu | Name=AluJr4 |
| ADediting_260253 | chr11_61409077_- | SINE | Alu | Name=AluJr4 |
| ADediting_260254 | chr11_61409123_- | SINE | Alu | Name=AluJr4 |
| ADediting_260255 | chr11_61409131_- | SINE | Alu | Name=AluJr4 |
| ADediting_260256 | chr11_61409347_- | SINE | Alu | Name=AluSg7 |
| ADediting_260257 | chr11_61409388_- | SINE | Alu | Name=AluSg7 |
| ADediting_260258 | chr11_61409408_- | SINE | Alu | Name=AluSg7 |
| ADediting_260259 | chr11_61409455_- | SINE | Alu | Name=AluSg7 |
| ADediting_260260 | chr11_61409717_- | SINE | Alu | Name=AluSx4 |
| ADediting_260261 | chr11_61409719_- | SINE | Alu | Name=AluSx4 |
| ADediting_260262 | chr11_61409725_- | SINE | Alu | Name=AluSx4 |
| ADediting_260263 | chr11_61409731_- | SINE | Alu | Name=AluSx4 |
| ADediting_260264 | chr11_61409782_- | SINE | Alu | Name=AluSx4 |
| ADediting_260265 | chr11_61409789_- | SINE | Alu | Name=AluSx4 |
| ADediting_260266 | chr11_61409791_- | SINE | Alu | Name=AluSx4 |
| ADediting_260267 | chr11_61409794_- | SINE | Alu | Name=AluSx4 |
| ADediting_260268 | chr11_61409808_- | SINE | Alu | Name=AluSx4 |
| ADediting_260269 | chr11_61409811_- | SINE | Alu | Name=AluSx4 |
| ADediting_260270 | chr11_61409825_- | SINE | Alu | Name=AluSx4 |
| ADediting_260271 | chr11_61409849_- | SINE | Alu | Name=AluSx4 |
| ADediting_260272 | chr11_61409851_- | SINE | Alu | Name=AluSx4 |
| ADediting_260273 | chr11_61409861_- | SINE | Alu | Name=AluSx4 |
| ADediting_260274 | chr11_61409864_- | SINE | Alu | Name=AluSx4 |
| ADediting_260275 | chr11_61409873_- | SINE | Alu | Name=AluSx4 |
| ADediting_260276 | chr11_61409887_- | SINE | Alu | Name=AluSx4 |
| ADediting_260277 | chr11_61409901_- | SINE | Alu | Name=AluSx4 |
| ADediting_260278 | chr11_61409907_- | SINE | Alu | Name=AluSx4 |
| ADediting_260279 | chr11_61409908_- | SINE | Alu | Name=AluSx4 |
| ADediting_260280 | chr11_61409913_- | SINE | Alu | Name=AluSx4 |
| ADediting_260281 | chr11_61409918_- | SINE | Alu | Name=AluSx4 |
| ADediting_260282 | chr11_61409926_- | SINE | Alu | Name=AluSx4 |
| ADediting_260283 | chr11_61409934_- | SINE | Alu | Name=AluSx4 |
| ADediting_260284 | chr11_61409962_- | SINE | Alu | Name=AluSx4 |
| ADediting_260285 | chr11_61409964_- | SINE | Alu | Name=AluSx4 |
| ADediting_260286 | chr11_61409994_- | SINE | Alu | Name=FLAM_C |
| ADediting_260287 | chr11_61410002_- | SINE | Alu | Name=FLAM_C |
| ADediting_260288 | chr11_61410025_- | SINE | Alu | Name=FLAM_C |
| ADediting_260289 | chr11_61410026_- | SINE | Alu | Name=FLAM_C |
| ADediting_260290 | chr11_61410030_- | SINE | Alu | Name=FLAM_C |
| ADediting_260291 | chr11_61410038_- | SINE | Alu | Name=FLAM_C |
| ADediting_260292 | chr11_61410158_- | SINE | Alu | Name=AluJo |
| ADediting_260293 | chr11_61410190_- | SINE | Alu | Name=AluJo |
| ADediting_260294 | chr11_61410195_- | SINE | Alu | Name=AluJo |
| ADediting_260295 | chr11_61410222_- | SINE | Alu | Name=AluJo |
| ADediting_260296 | chr11_61410226_- | SINE | Alu | Name=AluJo |
| ADediting_260297 | chr11_61410249_- | SINE | Alu | Name=AluJo |
| ADediting_260298 | chr11_61410253_- | SINE | Alu | Name=AluJo |
| ADediting_260299 | chr11_61410255_- | SINE | Alu | Name=AluJo |
| ADediting_260300 | chr11_61410261_- | SINE | Alu | Name=AluJo |
| ADediting_260301 | chr11_61410264_- | SINE | Alu | Name=AluJo |
| ADediting_260302 | chr11_61410267_- | SINE | Alu | Name=AluJo |
| ADediting_260303 | chr11_61410284_- | SINE | Alu | Name=AluJo |
| ADediting_260304 | chr11_61410286_- | SINE | Alu | Name=AluJo |
| ADediting_260305 | chr11_61410288_- | SINE | Alu | Name=AluJo |
| ADediting_260306 | chr11_61410309_- | SINE | Alu | Name=AluJo |
| ADediting_260307 | chr11_61410312_- | SINE | Alu | Name=AluJo |
| ADediting_260308 | chr11_61410316_- | SINE | Alu | Name=AluJo |
| ADediting_260309 | chr11_61410335_- | SINE | Alu | Name=AluJo |
| ADediting_260310 | chr11_61410351_- | SINE | Alu | Name=AluJo |
| ADediting_260311 | chr11_61410359_- | SINE | Alu | Name=AluJo |
| ADediting_260312 | chr11_61410363_- | SINE | Alu | Name=AluJo |
| ADediting_260313 | chr11_61410365_- | SINE | Alu | Name=AluJo |
| ADediting_260314 | chr11_61412324_- | SINE | Alu | Name=AluY |
| ADediting_260315 | chr11_61412414_- | SINE | Alu | Name=AluY |
| ADediting_260316 | chr11_61412418_- | SINE | Alu | Name=AluY |
| ADediting_260317 | chr11_61412428_- | SINE | Alu | Name=AluY |
| ADediting_260318 | chr11_61412454_- | SINE | Alu | Name=AluY |
| ADediting_260319 | chr11_61412464_- | SINE | Alu | Name=AluY |
| ADediting_260320 | chr11_61412510_- | SINE | Alu | Name=AluY |
| ADediting_260321 | chr11_61412540_- | SINE | Alu | Name=AluY |
| ADediting_260322 | chr11_61412556_- | SINE | Alu | Name=AluY |
| ADediting_260323 | chr11_61412561_- | SINE | Alu | Name=AluY |
| ADediting_260324 | chr11_61413372_- | SINE | Alu | Name=AluSz |
| ADediting_260325 | chr11_61413387_- | SINE | Alu | Name=AluSz |
| ADediting_260326 | chr11_61413388_- | SINE | Alu | Name=AluSz |
| ADediting_260327 | chr11_61413389_- | SINE | Alu | Name=AluSz |
| ADediting_260328 | chr11_61413402_- | SINE | Alu | Name=AluSz |
| ADediting_260329 | chr11_61413414_- | SINE | Alu | Name=AluSz |
| ADediting_260330 | chr11_61413448_- | SINE | Alu | Name=AluSz |
| ADediting_260331 | chr11_61413468_- | SINE | Alu | Name=AluSz |
| ADediting_260332 | chr11_61413483_- | SINE | Alu | Name=AluSz |
| ADediting_260333 | chr11_61413487_- | SINE | Alu | Name=AluSz |
| ADediting_260334 | chr11_61413518_- | SINE | Alu | Name=AluSz |
| ADediting_260335 | chr11_61413523_- | SINE | Alu | Name=AluSz |
| ADediting_260336 | chr11_61413544_- | SINE | Alu | Name=AluSz |
| ADediting_260337 | chr11_61413548_- | SINE | Alu | Name=AluSz |
| ADediting_260338 | chr11_61413553_- | SINE | Alu | Name=AluSz |
| ADediting_260339 | chr11_61413555_- | SINE | Alu | Name=AluSz |
| ADediting_260340 | chr11_61413568_- | SINE | Alu | Name=AluSz |
| ADediting_260341 | chr11_61413569_- | SINE | Alu | Name=AluSz |
| ADediting_260342 | chr11_61413607_- | SINE | Alu | Name=AluSz |
| ADediting_260343 | chr11_61413615_- | SINE | Alu | Name=AluSz |
| ADediting_260344 | chr11_61414313_- | SINE | Alu | Name=AluSz6 |
| ADediting_260345 | chr11_61414317_- | SINE | Alu | Name=AluSz6 |
| ADediting_260346 | chr11_61414325_- | SINE | Alu | Name=AluSz6 |
| ADediting_260347 | chr11_61414326_- | SINE | Alu | Name=AluSz6 |
| ADediting_260348 | chr11_61414327_- | SINE | Alu | Name=AluSz6 |
| ADediting_260349 | chr11_61414330_- | SINE | Alu | Name=AluSz6 |
| ADediting_260350 | chr11_61414332_- | SINE | Alu | Name=AluSz6 |
| ADediting_260351 | chr11_61414389_- | SINE | Alu | Name=AluSz6 |
| ADediting_260352 | chr11_61414399_- | SINE | Alu | Name=AluSz6 |
| ADediting_260353 | chr11_61414421_- | SINE | Alu | Name=AluSz6 |
| ADediting_260354 | chr11_61414986_- | SINE | Alu | Name=AluSz |
| ADediting_260355 | chr11_61414992_- | SINE | Alu | Name=AluSz |
| ADediting_260356 | chr11_61414993_- | SINE | Alu | Name=AluSz |
| ADediting_260357 | chr11_61415065_- | SINE | Alu | Name=AluSz |
| ADediting_260358 | chr11_61415090_- | SINE | Alu | Name=AluSz |
| ADediting_260359 | chr11_61415114_- | SINE | Alu | Name=AluSz |
| ADediting_260360 | chr11_61415116_- | SINE | Alu | Name=AluSz |
| ADediting_260361 | chr11_61415126_- | SINE | Alu | Name=AluSz |
| ADediting_260362 | chr11_61415176_- | SINE | Alu | Name=AluSz |
| ADediting_260363 | chr11_61415178_- | SINE | Alu | Name=AluSz |
| ADediting_260364 | chr11_61415191_- | SINE | Alu | Name=AluSz |
| ADediting_260365 | chr11_61423059_- | SINE | Alu | Name=AluJb |
| ADediting_260366 | chr11_61423264_- | SINE | Alu | Name=AluSg |
| ADediting_260367 | chr11_61423466_- | SINE | Alu | Name=AluSg |
| ADediting_260368 | chr11_61424545_- | SINE | Alu | Name=AluSx |
| ADediting_260369 | chr11_61424590_- | SINE | Alu | Name=AluSx |
| ADediting_260370 | chr11_61424711_- | SINE | Alu | Name=AluSx |
| ADediting_260371 | chr11_61424725_- | SINE | Alu | Name=AluSx |
| ADediting_260372 | chr11_61426860_- | SINE | Alu | Name=AluSc |
| ADediting_260373 | chr11_61426944_- | SINE | Alu | Name=AluSc |
| ADediting_260374 | chr11_61426945_- | SINE | Alu | Name=AluSc |
| ADediting_260375 | chr11_61426952_- | SINE | Alu | Name=AluSc |
| ADediting_260376 | chr11_61426984_- | SINE | Alu | Name=AluSc |
| ADediting_260377 | chr11_61427164_- | SINE | Alu | Name=FLAM_C |
| ADediting_260378 | chr11_61428321_- | SINE | Alu | Name=AluJr |
| ADediting_260379 | chr11_61428405_- | SINE | Alu | Name=AluJr |
| ADediting_260380 | chr11_61428428_- | SINE | Alu | Name=AluJr |
| ADediting_260381 | chr11_61428476_- | SINE | Alu | Name=AluJr |
| ADediting_1527237 | chr11_61407043_- | SINE | Alu | Name=AluJb |
| ADediting_1527238 | chr11_61408333_- | SINE | Alu | Name=AluY |
| ADediting_1527239 | chr11_61408388_- | SINE | Alu | Name=AluY |
| ADediting_1527240 | chr11_61408974_- | SINE | Alu | Name=AluJr4 |
| ADediting_1527241 | chr11_61409094_- | SINE | Alu | Name=AluJr4 |
| ADediting_1527242 | chr11_61409309_- | SINE | Alu | Name=AluSg7 |
| ADediting_1527243 | chr11_61409323_- | SINE | Alu | Name=AluSg7 |
| ADediting_1527244 | chr11_61409324_- | SINE | Alu | Name=AluSg7 |
| ADediting_1527245 | chr11_61409350_- | SINE | Alu | Name=AluSg7 |
| ADediting_1527246 | chr11_61409461_- | SINE | Alu | Name=AluSg7 |
| ADediting_1527247 | chr11_61409732_- | SINE | Alu | Name=AluSx4 |
| ADediting_1527248 | chr11_61409835_- | SINE | Alu | Name=AluSx4 |
| ADediting_1527249 | chr11_61410254_- | SINE | Alu | Name=AluJo |
| ADediting_1527250 | chr11_61410258_- | SINE | Alu | Name=AluJo |
| ADediting_1527251 | chr11_61410262_- | SINE | Alu | Name=AluJo |
| ADediting_1527252 | chr11_61410265_- | SINE | Alu | Name=AluJo |
| ADediting_1527253 | chr11_61410280_- | SINE | Alu | Name=AluJo |
| ADediting_1527254 | chr11_61428274_- | SINE | Alu | Name=AluJr |
| ADediting_1610230 | chr11_61409024_- | SINE | Alu | Name=AluJr4 |
| ADediting_1610231 | chr11_61412989_- | SINE | Alu | Name=AluJr4 |
| ADediting_1610232 | chr11_61423021_- | SINE | Alu | Name=AluJb |
| ADediting_1610233 | chr11_61427181_- | SINE | Alu | Name=FLAM_C |
| ADediting_1610234 | chr11_61428419_- | SINE | Alu | Name=AluJr |
Top |
RNA A-to-I editing events in the alternative splicing sites for CPSF7 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CPSF7 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
Top |
Protein coding region RNA A-to-I editings for CPSF7 |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
Top |
The effects of the RNA editing to the miRNA binding sites for CPSF7 |
| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000149532.15 | ENST00000340437.8 | CPSF7-201 | hsa-miR-5688 | chr11 | 61402776 | 61402782 | 7mer-m8 | 61402775 | 61402799 | 148 | -18.23 |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000149532.15 | ENST00000394888.8 | CPSF7-202 | hsa-miR-5688 | chr11 | 61402776 | 61402782 | 7mer-m8 | 61402775 | 61402799 | 148 | -18.23 |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000149532.15 | ENST00000439958.7 | CPSF7-205 | hsa-miR-5688 | chr11 | 61402776 | 61402782 | 7mer-m8 | 61402775 | 61402799 | 148 | -18.23 |
| ADediting_1391023 | chr8_140732605_- | ENSG00000149532.15 | ENST00000541963.5 | CPSF7-220 | hsa-miR-151a-3p | chr11 | 61420473 | 61420480 | 8mer-1a | 61420473 | 61420491 | 147 | -14.77 |
| ADediting_1535951 | chr14_100874558_+ | ENSG00000149532.15 | ENST00000340437.8 | CPSF7-201 | hsa-miR-337-3p | chr11 | 61404455 | 61404461 | 7mer-1a | 61404455 | 61404476 | 140 | -22.86 |
| ADediting_1535951 | chr14_100874558_+ | ENSG00000149532.15 | ENST00000394888.8 | CPSF7-202 | hsa-miR-337-3p | chr11 | 61404455 | 61404461 | 7mer-1a | 61404455 | 61404476 | 140 | -22.86 |
| ADediting_1535951 | chr14_100874558_+ | ENSG00000149532.15 | ENST00000439958.7 | CPSF7-205 | hsa-miR-337-3p | chr11 | 61404455 | 61404461 | 7mer-1a | 61404455 | 61404476 | 140 | -22.86 |
| ADediting_1535951 | chr14_100874558_+ | ENSG00000149532.15 | ENST00000448745.5 | CPSF7-206 | hsa-miR-337-3p | chr11 | 61404455 | 61404461 | 7mer-1a | 61404455 | 61404476 | 140 | -22.86 |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000149532.15 | ENST00000340437.8 | CPSF7-201 | hsa-miR-381-3p | chr11 | 61404664 | 61404670 | 7mer-m8 | 61404663 | 61404684 | 144 | -9.98 |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000149532.15 | ENST00000394888.8 | CPSF7-202 | hsa-miR-381-3p | chr11 | 61404664 | 61404670 | 7mer-m8 | 61404663 | 61404684 | 144 | -9.98 |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000149532.15 | ENST00000439958.7 | CPSF7-205 | hsa-miR-381-3p | chr11 | 61404664 | 61404670 | 7mer-m8 | 61404663 | 61404684 | 144 | -9.98 |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000149532.15 | ENST00000448745.5 | CPSF7-206 | hsa-miR-381-3p | chr11 | 61404664 | 61404670 | 7mer-m8 | 61404663 | 61404684 | 144 | -9.98 |
| ADediting_291761 | chr11_93733708_- | ENSG00000149532.15 | ENST00000340437.8 | CPSF7-201 | hsa-miR-1304-3p | chr11 | 61403370 | 61403376 | 7mer-m8 | 61403369 | 61403390 | 163 | -27.73 |
| ADediting_291761 | chr11_93733708_- | ENSG00000149532.15 | ENST00000394888.8 | CPSF7-202 | hsa-miR-1304-3p | chr11 | 61403370 | 61403376 | 7mer-m8 | 61403369 | 61403390 | 163 | -27.73 |
| ADediting_291761 | chr11_93733708_- | ENSG00000149532.15 | ENST00000439958.7 | CPSF7-205 | hsa-miR-1304-3p | chr11 | 61403370 | 61403376 | 7mer-m8 | 61403369 | 61403390 | 163 | -27.73 |
| ADediting_496066 | chr15_66496985_- | ENSG00000149532.15 | ENST00000340437.8 | CPSF7-201 | hsa-miR-4512 | chr11 | 61404436 | 61404442 | 7mer-m8 | 61404435 | 61404458 | 146 | -17.95 |
| ADediting_496066 | chr15_66496985_- | ENSG00000149532.15 | ENST00000394888.8 | CPSF7-202 | hsa-miR-4512 | chr11 | 61404436 | 61404442 | 7mer-m8 | 61404435 | 61404458 | 146 | -17.95 |
| ADediting_496066 | chr15_66496985_- | ENSG00000149532.15 | ENST00000439958.7 | CPSF7-205 | hsa-miR-4512 | chr11 | 61404436 | 61404442 | 7mer-m8 | 61404435 | 61404458 | 146 | -17.95 |
| ADediting_496066 | chr15_66496985_- | ENSG00000149532.15 | ENST00000448745.5 | CPSF7-206 | hsa-miR-4512 | chr11 | 61404436 | 61404442 | 7mer-m8 | 61404435 | 61404458 | 146 | -17.95 |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for CPSF7 |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for CPSF7 |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| CER | ADediting_1527244 | chr11_61409324_- | 0.00808334094071059 | 0.215510289289726 | 1.19192230320906e-05 | 0.349151363032486 | 0.238913411901922 | 0.0967429433674017 |
| CER | ADediting_260221 | chr11_61406773_- | 0.000366525142990049 | 0.287174295754157 | 2.35862649993954e-05 | 0.337829429936181 | 0.537355058030711 | 0.0507550581133687 |
| DLPFC | ADediting_260222 | chr11_61406828_- | 0.00667200597690876 | 0.153779642212107 | 0.662677148615291 | 0.024872273377955 | 1.10488871780612e-13 | 0.405264712023906 |
| CER | ADediting_260222 | chr11_61406828_- | 1.69354841470071e-07 | 0.411418474697584 | 3.57798364185622e-09 | 0.458661811373849 | 0.0786509482014957 | 0.144041675258149 |
| DLPFC | ADediting_260223 | chr11_61406906_- | 0.000618835030490672 | 0.193368915333976 | 0.260154319809198 | 0.0641472574065997 | 1.87773082369116e-09 | 0.33280253406456 |
| DLPFC | ADediting_260224 | chr11_61406916_- | 5.01517497185263e-05 | 0.228180271955377 | 0.155648459341562 | 0.080837158229216 | 3.18520849547104e-10 | 0.347433124255349 |
| CER | ADediting_260224 | chr11_61406916_- | 0.000112600528954621 | 0.310092195449005 | 0.000223324827269275 | 0.297027584264402 | 0.0636387842640762 | 0.151826758496851 |
| CER | ADediting_260228 | chr11_61407037_- | 1.85836721014319e-06 | 0.377947752363894 | 2.49282168914751e-05 | 0.336891924577666 | 0.0261551170446499 | 0.181587442823749 |
| DLPFC | ADediting_260241 | chr11_61408386_- | 0.0526367627582632 | 0.110174495595777 | 0.924258833602155 | 0.00542150315874834 | 6.6568114835183e-08 | 0.300793672492252 |
| CER | ADediting_260241 | chr11_61408386_- | 1.72339061640264e-06 | 0.379059583860165 | 9.72953057435488e-05 | 0.312802154289 | 0.369845428343743 | 0.0737374948395143 |
| CER | ADediting_260244 | chr11_61408944_- | 4.27052972603856e-12 | 0.527007634965057 | 5.8709066391599e-16 | 0.598709839297036 | 0.000629158211097277 | 0.276004139423797 |
| TCX | ADediting_260244 | chr11_61408944_- | 6.12002951962536e-05 | 0.321233370084275 | 0.303035540240241 | 0.0846518057102648 | 0.00403967357343348 | 0.233447020624776 |
| CER | ADediting_260245 | chr11_61408961_- | 1.45218350724642e-05 | 0.345919909237722 | 0.00100238200629811 | 0.265985142977011 | 0.79581553539711 | -0.0213040022780603 |
| TCX | ADediting_260245 | chr11_61408961_- | 1.16673138087865e-05 | 0.349498748018095 | 0.0445418335595295 | 0.164288603273313 | 0.0706898885266303 | 0.148003116750104 |
| DLPFC | ADediting_260248 | chr11_61409018_- | 0.0642222670338795 | 0.105242015772288 | 0.566566775062723 | -0.0326740520001353 | 1.00999754540732e-20 | 0.496754121792598 |
| CER | ADediting_260248 | chr11_61409018_- | 1.28939178982829e-08 | 0.443745512843328 | 3.44979655457687e-08 | 0.431787169175548 | 0.0808600772079943 | 0.142999997800637 |
| DLPFC | ADediting_260252 | chr11_61409072_- | 0.00323773914056312 | 0.166721848863702 | 0.3692261382299 | 0.0511719508503435 | 2.23458430444444e-15 | 0.429932240023871 |
| CER | ADediting_260252 | chr11_61409072_- | 7.45759423559631e-08 | 0.422085945279229 | 6.75539955910144e-06 | 0.358248951312557 | 0.323266367514565 | 0.0811968946247198 |
| CER | ADediting_260253 | chr11_61409077_- | 5.0046105447887e-06 | 0.362944812002819 | 0.000154919217786022 | 0.304081263776435 | 0.508915947781846 | 0.0543465283754474 |
| CER | ADediting_260255 | chr11_61409131_- | 6.10740134708999e-05 | 0.321270380348468 | 8.225228768589e-06 | 0.355126384892395 | 0.00841864676911843 | 0.214416317119309 |
| CER | ADediting_260256 | chr11_61409347_- | 0.0154092042908373 | 0.197505461107157 | 5.3998917798417e-05 | 0.323467843002971 | 0.493055459027081 | 0.0563945493058423 |
| CER | ADediting_260258 | chr11_61409408_- | 0.00173339783928379 | 0.253690102278896 | 8.97228366817717e-06 | 0.353736913266156 | 0.312403050538956 | 0.0830339582965765 |
| CER | ADediting_260260 | chr11_61409717_- | 2.13243523740187e-05 | 0.339529708954713 | 2.508695594672e-07 | 0.40617365230622 | 0.664747128166565 | -0.0356715278718715 |
| DLPFC | ADediting_260261 | chr11_61409719_- | 0.020540834380564 | 0.131517465647684 | 0.364657059453147 | 0.0516615758628027 | 6.97473077363532e-10 | 0.341063414101065 |
| CER | ADediting_260261 | chr11_61409719_- | 9.20549157905827e-07 | 0.388150613263155 | 4.6610856149045e-05 | 0.326071823778925 | 0.38348121933778 | 0.0716656391307365 |
| DLPFC | ADediting_260262 | chr11_61409725_- | 0.00531892051498382 | 0.157937520661257 | 0.283717544576157 | 0.061075697487001 | 2.92283152658258e-10 | 0.348123099993144 |
| CER | ADediting_260262 | chr11_61409725_- | 3.63905209520096e-13 | 0.54864697865916 | 2.14903097816488e-12 | 0.533198522792588 | 0.0159390153680405 | 0.19652181167987 |
| CER | ADediting_260265 | chr11_61409789_- | 5.21679458913046e-12 | 0.525179416128002 | 1.8128661148122e-10 | 0.490820916206927 | 0.167427448068881 | 0.113303268876929 |
| CER | ADediting_260266 | chr11_61409791_- | 1.84918901704857e-11 | 0.513360587116602 | 6.0529696245782e-09 | 0.452630815931398 | 0.0971278855747008 | 0.135959531500354 |
| DLPFC | ADediting_260269 | chr11_61409811_- | 0.00646931070348351 | 0.154351368357464 | 0.655817204159895 | 0.0254123755024215 | 2.10881014140391e-11 | 0.368457560202105 |
| CER | ADediting_260269 | chr11_61409811_- | 1.98102507526009e-10 | 0.489910991557027 | 2.08783026484829e-10 | 0.489371081139259 | 0.2657848459804 | 0.0914359652102561 |
| CER | ADediting_260272 | chr11_61409851_- | 4.07235991139477e-05 | 0.328440924240622 | 0.000289167387954795 | 0.29193326611024 | 0.411533879379891 | 0.0675388693672644 |
| CER | ADediting_260273 | chr11_61409861_- | 1.14536388240961e-10 | 0.495488906965872 | 1.94752246388427e-09 | 0.465496096687266 | 0.128003356864995 | 0.124830296324812 |
| DLPFC | ADediting_260278 | chr11_61409907_- | 0.000121990428018161 | 0.216497154536603 | 0.0847516646677265 | 0.0980628929679886 | 1.27294319000329e-09 | 0.336074256265805 |
| CER | ADediting_260278 | chr11_61409907_- | 2.54815348456332e-11 | 0.510292465389984 | 3.03612986422707e-12 | 0.530098895268375 | 0.151520194843792 | 0.117677659266942 |
| DLPFC | ADediting_260281 | chr11_61409918_- | 1.02781572749956e-05 | 0.247628901292516 | 0.00681589075850989 | 0.153383154777991 | 2.67148371188487e-13 | 0.39938834321793 |
| CER | ADediting_260281 | chr11_61409918_- | 1.83835182803662e-06 | 0.378107674575385 | 5.02226002208176e-07 | 0.396683442435583 | 0.622078881832015 | 0.040568419650001 |
| DLPFC | ADediting_260282 | chr11_61409926_- | 8.7307599608536e-08 | 0.298197471510687 | 0.00150367038611209 | 0.179528044212209 | 1.96992835405656e-18 | 0.469893459080227 |
| CER | ADediting_260282 | chr11_61409926_- | 9.5231024939664e-06 | 0.352780846373227 | 2.45928281419021e-05 | 0.33712169401862 | 0.401789001961657 | 0.0689528539933831 |
| DLPFC | ADediting_260283 | chr11_61409934_- | 0.00324037984644231 | 0.166707761627385 | 0.393550140630471 | 0.0486260911550962 | 3.03927302182151e-11 | 0.365715184506472 |
| CER | ADediting_260283 | chr11_61409934_- | 4.35188202945803e-12 | 0.526835729051151 | 4.4485123700238e-11 | 0.504886647187941 | 0.0862593768906684 | 0.14054703273042 |
| DLPFC | ADediting_260284 | chr11_61409962_- | 0.0116079923647749 | 0.14318370967361 | 0.360677860923932 | 0.0520911056025109 | 4.7941689864059e-12 | 0.379314539451937 |
| CER | ADediting_260284 | chr11_61409962_- | 1.38482078686773e-05 | 0.346700307534643 | 0.000224687252451415 | 0.296908744890378 | 0.960160965058259 | 0.00411291968025062 |
| DLPFC | ADediting_260285 | chr11_61409964_- | 0.000616415342907678 | 0.193427919610035 | 0.0617767034849684 | 0.106218100293687 | 7.29792644150728e-13 | 0.392555140273768 |
| CER | ADediting_260289 | chr11_61410026_- | 0.00517826640420875 | 0.227178299876372 | 0.00014628712714426 | 0.305170963237377 | 0.807535650537887 | 0.0200561596403494 |
| DLPFC | ADediting_260294 | chr11_61410195_- | 1.45254257599394e-06 | 0.269629466454609 | 0.00526189245951319 | 0.158132874821741 | 1.24098482159111e-09 | 0.336286923142868 |
| CER | ADediting_260294 | chr11_61410195_- | 1.42054780013588e-14 | 0.574960945122251 | 4.47828424175909e-10 | 0.481416837734963 | 0.0634254769338771 | 0.151947714689591 |
| DLPFC | ADediting_260296 | chr11_61410226_- | 1.67270939953205e-05 | 0.241824752838795 | 0.0357414206992576 | 0.119319500886517 | 1.62951625006821e-08 | 0.313873468677394 |
| CER | ADediting_260296 | chr11_61410226_- | 2.27120824019533e-16 | 0.605427230953534 | 4.16264400042546e-16 | 0.60116024748874 | 0.0212909605193676 | 0.187915352324158 |
| CER | ADediting_260297 | chr11_61410249_- | 1.85918862160814e-05 | 0.341826537180335 | 0.00073915960883265 | 0.272580742970533 | 0.0745226207169262 | 0.14605323433833 |
| CER | ADediting_260298 | chr11_61410253_- | 1.3179657260081e-08 | 0.443484138701458 | 5.0704372083256e-09 | 0.454675728094478 | 0.387009836112689 | 0.0711368171497765 |
| CER | ADediting_260301 | chr11_61410264_- | 0.00205331963912893 | 0.24976585943323 | 0.000190634701615806 | 0.300102162754899 | 0.814154319511574 | 0.0193534970924453 |
| CER | ADediting_260302 | chr11_61410267_- | 3.15264354803104e-06 | 0.370036906946625 | 8.37383041888557e-08 | 0.420601018695326 | 0.277814496549615 | 0.0891789773066697 |
| TCX | ADediting_260302 | chr11_61410267_- | 0.448505053035915 | 0.062344373895121 | 0.518078279441517 | -0.0531785371325007 | 4.72971875853858e-05 | 0.325814176526426 |
| DLPFC | ADediting_260303 | chr11_61410284_- | 0.0015921721203686 | 0.178602216663141 | 0.405300966875832 | 0.0474302904599472 | 2.18111587568138e-12 | 0.384926801236636 |
| CER | ADediting_260303 | chr11_61410284_- | 2.48362834785041e-11 | 0.510539031196997 | 4.87422392950039e-08 | 0.427475185857325 | 0.13597952439575 | 0.122299670893871 |
| DLPFC | ADediting_260309 | chr11_61410335_- | 1.26023195362975e-05 | 0.245216696052442 | 0.008895566281669 | 0.14835742033826 | 5.91458929935399e-12 | 0.37779958315789 |
| CER | ADediting_260309 | chr11_61410335_- | 1.95282000949998e-07 | 0.409527448824972 | 2.09222759205025e-08 | 0.437921366121343 | 0.0907940159144917 | 0.138580054944299 |
| CER | ADediting_260310 | chr11_61410351_- | 4.23823080877285e-16 | 0.601032525529828 | 4.83455709358701e-12 | 0.525875779035835 | 0.00370885392179545 | 0.235567460832796 |
| DLPFC | ADediting_260311 | chr11_61410359_- | 1.19337050933354e-05 | 0.245864159893556 | 0.0617629418889884 | 0.106223682185968 | 2.03751169244185e-10 | 0.35100099859243 |
| CER | ADediting_260311 | chr11_61410359_- | 2.72341225953388e-17 | 0.61987992123458 | 5.09400355863179e-13 | 0.545781014150134 | 0.00166192125462095 | 0.254656448137593 |
| TCX | ADediting_260311 | chr11_61410359_- | 0.0139387472548668 | 0.200398794503121 | 0.784012404690662 | 0.0225656007721515 | 1.74949100835378e-05 | 0.342839427964191 |
| DLPFC | ADediting_260312 | chr11_61410363_- | 0.000521147790702978 | 0.195940529384495 | 0.198647770176123 | 0.073204329979456 | 2.62615069463487e-09 | 0.329947932928277 |
| CER | ADediting_260312 | chr11_61410363_- | 3.1663981508032e-09 | 0.460047039239261 | 6.76202544775691e-07 | 0.392524630762955 | 0.234498919458891 | 0.0976538759480013 |
| TCX | ADediting_260312 | chr11_61410363_- | 0.289728539123636 | 0.0870077120732463 | 0.417756589430794 | -0.0666462308998809 | 2.15136583094356e-06 | 0.375777244071181 |
| DLPFC | ADediting_260315 | chr11_61412414_- | 0.145427865369442 | -0.0828804960893724 | 0.0111569515710624 | -0.143964174636824 | 2.89008780447543e-10 | 0.348213399074701 |
| DLPFC | ADediting_260317 | chr11_61412428_- | 0.979000200531248 | -0.00150107414096587 | 0.028009456775992 | -0.124805835652506 | 3.0844724535022e-24 | 0.533857812174431 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 4.1901915503646e-60 | 0.762122604425679 | 9.44918061123129e-81 | 0.831859994835807 | 0.00931924640372738 | 0.147464138394649 |
| AC | 1.51188487351983e-88 | 0.894220608280213 | 2.55426951008608e-51 | 0.774893981195455 | 4.08354287347284e-19 | 0.525051931134005 |
| PCC | 8.46282318617473e-49 | 0.825350312001444 | 6.88849398043272e-41 | 0.783354122402173 | 2.58048616692718e-05 | 0.299406009749765 |
| CER | 6.91511230550888e-50 | 0.880706536774381 | 4.58401088533865e-51 | 0.885272653870117 | 7.24600732590477e-07 | 0.391549896636759 |
| TCX | 3.05963200588624e-36 | 0.810764462593095 | 1.74278697316675e-06 | 0.378894819635054 | 4.09973848822492e-12 | 0.527379116417871 |
| FP | 1.30934449691857e-40 | 0.79829974302607 | 2.05549482527612e-15 | 0.549207955521142 | 3.07522481432375e-15 | 0.546319943489752 |
| IFG | 1.54393858552099e-09 | 0.89517321836656 | 1.67563333606762e-07 | 0.838392489662446 | 0.0275808997894264 | 0.440386622857381 |
| PG | 9.41592910869176e-53 | 0.848544814096916 | 1.4030351871402e-26 | 0.679891241794413 | 0.00306232090306696 | 0.216027646863857 |
| STG | 8.16528540846545e-19 | 0.786098611888311 | 1.13368549771754e-06 | 0.502169080226161 | 4.84263327790249e-05 | 0.428186046058896 |
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Relation with AD stages for CPSF7 |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| CER | ADediting_260296 | chr11_61410226_- | 4.97396804591217e-05 | 0.380040973117617 |
| TCX | ADediting_260244 | chr11_61408944_- | 0.00122636664946866 | 0.309892412788959 |
| TCX | ADediting_260269 | chr11_61409811_- | 6.53619203650396e-05 | 0.377798121568512 |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
| CER | 4.26583818695915e-07 | 0.463912602346937 |
| TCX | 1.16821992769916e-10 | 0.574799032438612 |
Top |
RelatedDrugs for CPSF7 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CPSF7 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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