|
||||||
|
 | |
| |
| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
| |
| |
| The effects of the RNA editing to the stability of the RNA structures |
| |
| |
| |
|
Gene summary for C12orf49 |
 Gene summary |
| Gene information | Gene symbol | C12orf49 | Gene ID | 79794 |
| Gene name | chromosome 12 open reading frame 49 | |
| Synonyms | - | |
| Cytomap | 12q24.22 | |
| Type of gene | protein-coding | |
| Description | UPF0454 protein C12orf49 | |
| Modification date | 20200313 | |
| UniProtAcc | Q9H741, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
Top |
RNA A-to-I events for C12orf49 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA editing frequencies across three data sets. |
 |
| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA A-to-I editing events in AD. |
| ADediting_309605(116711277, -), ADediting_309606(116711289, -), ADediting_309607(116711290, -), ADediting_309608(116711304, -), ADediting_309609(116711372, -), ADediting_309610(116711378, -), ADediting_309611(116711391, -), ADediting_309612(116711413, -), ADediting_309613(116711423, -), ADediting_309614(116711435, -), ADediting_309615(116711730, -), ADediting_309616(116711739, -), ADediting_309617(116711743, -), ADediting_309618(116711753, -), ADediting_309619(116711759, -), ADediting_309620(116711766, -), ADediting_309621(116711775, -), ADediting_309622(116711785, -), ADediting_309623(116711791, -), ADediting_309624(116711792, -), ADediting_309625(116711793, -), ADediting_309626(116711798, -), ADediting_309627(116711815, -), ADediting_309628(116711860, -), ADediting_309629(116711866, -), ADediting_309630(116711879, -), ADediting_309631(116711882, -), ADediting_309632(116711887, -), ADediting_309633(116711888, -), ADediting_309634(116711894, -), ADediting_309635(116714326, -), ADediting_309636(116714549, -), ADediting_309637(116714577, -), ADediting_309638(116714626, -), ADediting_309639(116714628, -), ADediting_309640(116714631, -), ADediting_309641(116714637, -), ADediting_309642(116714647, -), ADediting_309643(116714651, -), ADediting_309644(116714663, -), ADediting_309645(116714712, -), ADediting_309646(116714713, -), ADediting_309647(116715103, -), ADediting_309648(116715104, -), ADediting_309649(116715105, -), ADediting_309650(116715108, -), ADediting_309651(116715110, -), ADediting_309652(116715111, -), ADediting_309653(116715112, -), ADediting_309654(116715113, -), ADediting_309655(116715114, -), ADediting_309656(116715117, -), ADediting_309657(116715123, -), ADediting_309658(116715128, -), ADediting_309659(116715153, -), ADediting_309660(116715165, -), ADediting_309661(116715180, -), ADediting_309662(116715184, -), ADediting_309663(116715190, -), ADediting_309664(116715201, -), ADediting_309665(116715206, -), ADediting_309666(116715207, -), ADediting_309667(116730477, -), ADediting_309668(116732445, -), ADediting_309669(116732525, -), ADediting_309670(116732624, -), ADediting_309671(116732631, -), ADediting_309672(116732655, -), ADediting_309673(116732693, -), ADediting_309674(116733275, -), ADediting_309675(116734073, -), ADediting_1530404(116711400, -), ADediting_1530405(116711698, -), ADediting_1530406(116711747, -), ADediting_1530407(116711842, -), ADediting_1530408(116714537, -), ADediting_1530409(116714559, -), ADediting_1530410(116714756, -), ADediting_1530411(116715099, -), ADediting_1530412(116715129, -), ADediting_1530413(116715142, -), ADediting_1612213(116714551, -), ADediting_1612214(116714673, -), ADediting_1612215(116714683, -), ADediting_1612216(116714709, -), ADediting_1612217(116714743, -), ADediting_1612218(116715106, -), |
Top |
RNA editing positional annotations for C12orf49 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_309605 | chr12_116711277_- | UTR3 |
| ADediting_309606 | chr12_116711289_- | UTR3 |
| ADediting_309607 | chr12_116711290_- | UTR3 |
| ADediting_309608 | chr12_116711304_- | UTR3 |
| ADediting_309609 | chr12_116711372_- | UTR3 |
| ADediting_309610 | chr12_116711378_- | UTR3 |
| ADediting_309611 | chr12_116711391_- | UTR3 |
| ADediting_309612 | chr12_116711413_- | UTR3 |
| ADediting_309613 | chr12_116711423_- | UTR3 |
| ADediting_309614 | chr12_116711435_- | UTR3 |
| ADediting_309615 | chr12_116711730_- | UTR3 |
| ADediting_309616 | chr12_116711739_- | UTR3 |
| ADediting_309617 | chr12_116711743_- | UTR3 |
| ADediting_309618 | chr12_116711753_- | UTR3 |
| ADediting_309619 | chr12_116711759_- | UTR3 |
| ADediting_309620 | chr12_116711766_- | UTR3 |
| ADediting_309621 | chr12_116711775_- | UTR3 |
| ADediting_309622 | chr12_116711785_- | UTR3 |
| ADediting_309623 | chr12_116711791_- | UTR3 |
| ADediting_309624 | chr12_116711792_- | UTR3 |
| ADediting_309625 | chr12_116711793_- | UTR3 |
| ADediting_309626 | chr12_116711798_- | UTR3 |
| ADediting_309627 | chr12_116711815_- | UTR3 |
| ADediting_309628 | chr12_116711860_- | UTR3 |
| ADediting_309629 | chr12_116711866_- | UTR3 |
| ADediting_309630 | chr12_116711879_- | UTR3 |
| ADediting_309631 | chr12_116711882_- | UTR3 |
| ADediting_309632 | chr12_116711887_- | UTR3 |
| ADediting_309633 | chr12_116711888_- | UTR3 |
| ADediting_309634 | chr12_116711894_- | UTR3 |
| ADediting_309635 | chr12_116714326_- | UTR3 |
| ADediting_309636 | chr12_116714549_- | UTR3 |
| ADediting_309637 | chr12_116714577_- | UTR3 |
| ADediting_309638 | chr12_116714626_- | UTR3 |
| ADediting_309639 | chr12_116714628_- | UTR3 |
| ADediting_309640 | chr12_116714631_- | UTR3 |
| ADediting_309641 | chr12_116714637_- | UTR3 |
| ADediting_309642 | chr12_116714647_- | UTR3 |
| ADediting_309643 | chr12_116714651_- | UTR3 |
| ADediting_309644 | chr12_116714663_- | UTR3 |
| ADediting_309645 | chr12_116714712_- | UTR3 |
| ADediting_309646 | chr12_116714713_- | UTR3 |
| ADediting_309647 | chr12_116715103_- | UTR3 |
| ADediting_309648 | chr12_116715104_- | UTR3 |
| ADediting_309649 | chr12_116715105_- | UTR3 |
| ADediting_309650 | chr12_116715108_- | UTR3 |
| ADediting_309651 | chr12_116715110_- | UTR3 |
| ADediting_309652 | chr12_116715111_- | UTR3 |
| ADediting_309653 | chr12_116715112_- | UTR3 |
| ADediting_309654 | chr12_116715113_- | UTR3 |
| ADediting_309655 | chr12_116715114_- | UTR3 |
| ADediting_309656 | chr12_116715117_- | UTR3 |
| ADediting_309657 | chr12_116715123_- | UTR3 |
| ADediting_309658 | chr12_116715128_- | UTR3 |
| ADediting_309659 | chr12_116715153_- | UTR3 |
| ADediting_309660 | chr12_116715165_- | UTR3 |
| ADediting_309661 | chr12_116715180_- | UTR3 |
| ADediting_309662 | chr12_116715184_- | UTR3 |
| ADediting_309663 | chr12_116715190_- | UTR3 |
| ADediting_309664 | chr12_116715201_- | UTR3 |
| ADediting_309665 | chr12_116715206_- | UTR3 |
| ADediting_309666 | chr12_116715207_- | UTR3 |
| ADediting_309667 | chr12_116730477_- | intronic |
| ADediting_309668 | chr12_116732445_- | intronic |
| ADediting_309669 | chr12_116732525_- | intronic |
| ADediting_309670 | chr12_116732624_- | intronic |
| ADediting_309671 | chr12_116732631_- | intronic |
| ADediting_309672 | chr12_116732655_- | intronic |
| ADediting_309673 | chr12_116732693_- | intronic |
| ADediting_309674 | chr12_116733275_- | intronic |
| ADediting_309675 | chr12_116734073_- | intronic |
| ADediting_1530404 | chr12_116711400_- | UTR3 |
| ADediting_1530405 | chr12_116711698_- | UTR3 |
| ADediting_1530406 | chr12_116711747_- | UTR3 |
| ADediting_1530407 | chr12_116711842_- | UTR3 |
| ADediting_1530408 | chr12_116714537_- | UTR3 |
| ADediting_1530409 | chr12_116714559_- | UTR3 |
| ADediting_1530410 | chr12_116714756_- | UTR3 |
| ADediting_1530411 | chr12_116715099_- | UTR3 |
| ADediting_1530412 | chr12_116715129_- | UTR3 |
| ADediting_1530413 | chr12_116715142_- | UTR3 |
| ADediting_1612213 | chr12_116714551_- | UTR3 |
| ADediting_1612214 | chr12_116714673_- | UTR3 |
| ADediting_1612215 | chr12_116714683_- | UTR3 |
| ADediting_1612216 | chr12_116714709_- | UTR3 |
| ADediting_1612217 | chr12_116714743_- | UTR3 |
| ADediting_1612218 | chr12_116715106_- | UTR3 |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_309605 | chr12_116711277_- | SINE | Alu | Name=AluY |
| ADediting_309606 | chr12_116711289_- | SINE | Alu | Name=AluY |
| ADediting_309607 | chr12_116711290_- | SINE | Alu | Name=AluY |
| ADediting_309608 | chr12_116711304_- | SINE | Alu | Name=AluY |
| ADediting_309609 | chr12_116711372_- | SINE | Alu | Name=AluY |
| ADediting_309610 | chr12_116711378_- | SINE | Alu | Name=AluY |
| ADediting_309611 | chr12_116711391_- | SINE | Alu | Name=AluY |
| ADediting_309612 | chr12_116711413_- | SINE | Alu | Name=AluY |
| ADediting_309613 | chr12_116711423_- | SINE | Alu | Name=AluY |
| ADediting_309614 | chr12_116711435_- | SINE | Alu | Name=AluY |
| ADediting_309615 | chr12_116711730_- | SINE | Alu | Name=AluJo |
| ADediting_309616 | chr12_116711739_- | SINE | Alu | Name=AluJo |
| ADediting_309617 | chr12_116711743_- | SINE | Alu | Name=AluJo |
| ADediting_309618 | chr12_116711753_- | SINE | Alu | Name=AluJo |
| ADediting_309619 | chr12_116711759_- | SINE | Alu | Name=AluJo |
| ADediting_309620 | chr12_116711766_- | SINE | Alu | Name=AluJo |
| ADediting_309621 | chr12_116711775_- | SINE | Alu | Name=AluJo |
| ADediting_309622 | chr12_116711785_- | SINE | Alu | Name=AluJo |
| ADediting_309623 | chr12_116711791_- | SINE | Alu | Name=AluJo |
| ADediting_309624 | chr12_116711792_- | SINE | Alu | Name=AluJo |
| ADediting_309625 | chr12_116711793_- | SINE | Alu | Name=AluJo |
| ADediting_309626 | chr12_116711798_- | SINE | Alu | Name=AluJo |
| ADediting_309627 | chr12_116711815_- | SINE | Alu | Name=AluJo |
| ADediting_309628 | chr12_116711860_- | SINE | Alu | Name=AluJo |
| ADediting_309629 | chr12_116711866_- | SINE | Alu | Name=AluJo |
| ADediting_309630 | chr12_116711879_- | SINE | Alu | Name=AluJo |
| ADediting_309631 | chr12_116711882_- | SINE | Alu | Name=AluJo |
| ADediting_309632 | chr12_116711887_- | SINE | Alu | Name=AluJo |
| ADediting_309633 | chr12_116711888_- | SINE | Alu | Name=AluJo |
| ADediting_309634 | chr12_116711894_- | SINE | Alu | Name=AluJo |
| ADediting_309636 | chr12_116714549_- | SINE | Alu | Name=AluSx |
| ADediting_309637 | chr12_116714577_- | SINE | Alu | Name=AluSx |
| ADediting_309638 | chr12_116714626_- | SINE | Alu | Name=AluSx |
| ADediting_309639 | chr12_116714628_- | SINE | Alu | Name=AluSx |
| ADediting_309640 | chr12_116714631_- | SINE | Alu | Name=AluSx |
| ADediting_309641 | chr12_116714637_- | SINE | Alu | Name=AluSx |
| ADediting_309642 | chr12_116714647_- | SINE | Alu | Name=AluSx |
| ADediting_309643 | chr12_116714651_- | SINE | Alu | Name=AluSx |
| ADediting_309644 | chr12_116714663_- | SINE | Alu | Name=AluSx |
| ADediting_309645 | chr12_116714712_- | SINE | Alu | Name=AluSx |
| ADediting_309646 | chr12_116714713_- | SINE | Alu | Name=AluSx |
| ADediting_309647 | chr12_116715103_- | SINE | Alu | Name=AluSx |
| ADediting_309648 | chr12_116715104_- | SINE | Alu | Name=AluSx |
| ADediting_309649 | chr12_116715105_- | SINE | Alu | Name=AluSx |
| ADediting_309650 | chr12_116715108_- | SINE | Alu | Name=AluSx |
| ADediting_309651 | chr12_116715110_- | SINE | Alu | Name=AluSx |
| ADediting_309652 | chr12_116715111_- | SINE | Alu | Name=AluSx |
| ADediting_309653 | chr12_116715112_- | SINE | Alu | Name=AluSx |
| ADediting_309654 | chr12_116715113_- | SINE | Alu | Name=AluSx |
| ADediting_309655 | chr12_116715114_- | SINE | Alu | Name=AluSx |
| ADediting_309656 | chr12_116715117_- | SINE | Alu | Name=AluSx |
| ADediting_309657 | chr12_116715123_- | SINE | Alu | Name=AluSx |
| ADediting_309658 | chr12_116715128_- | SINE | Alu | Name=AluSx |
| ADediting_309659 | chr12_116715153_- | SINE | Alu | Name=AluSx |
| ADediting_309660 | chr12_116715165_- | SINE | Alu | Name=AluSx |
| ADediting_309661 | chr12_116715180_- | SINE | Alu | Name=AluSx |
| ADediting_309662 | chr12_116715184_- | SINE | Alu | Name=AluSx |
| ADediting_309663 | chr12_116715190_- | SINE | Alu | Name=AluSx |
| ADediting_309664 | chr12_116715201_- | SINE | Alu | Name=AluSx |
| ADediting_309665 | chr12_116715206_- | SINE | Alu | Name=AluSx |
| ADediting_309666 | chr12_116715207_- | SINE | Alu | Name=AluSx |
| ADediting_309667 | chr12_116730477_- | SINE | Alu | Name=AluSx1 |
| ADediting_309668 | chr12_116732445_- | SINE | Alu | Name=AluSx |
| ADediting_309669 | chr12_116732525_- | SINE | Alu | Name=AluSx |
| ADediting_309670 | chr12_116732624_- | SINE | Alu | Name=AluSx |
| ADediting_309671 | chr12_116732631_- | SINE | Alu | Name=AluSx |
| ADediting_309672 | chr12_116732655_- | SINE | Alu | Name=AluSx |
| ADediting_309673 | chr12_116732693_- | SINE | Alu | Name=AluSx |
| ADediting_309674 | chr12_116733275_- | SINE | Alu | Name=AluSc8 |
| ADediting_309675 | chr12_116734073_- | SINE | Alu | Name=AluSz6 |
| ADediting_1530404 | chr12_116711400_- | SINE | Alu | Name=AluY |
| ADediting_1530405 | chr12_116711698_- | SINE | Alu | Name=AluJo |
| ADediting_1530406 | chr12_116711747_- | SINE | Alu | Name=AluJo |
| ADediting_1530407 | chr12_116711842_- | SINE | Alu | Name=AluJo |
| ADediting_1530408 | chr12_116714537_- | SINE | Alu | Name=AluSx |
| ADediting_1530409 | chr12_116714559_- | SINE | Alu | Name=AluSx |
| ADediting_1530410 | chr12_116714756_- | SINE | Alu | Name=AluSx |
| ADediting_1530411 | chr12_116715099_- | SINE | Alu | Name=AluSx |
| ADediting_1530412 | chr12_116715129_- | SINE | Alu | Name=AluSx |
| ADediting_1530413 | chr12_116715142_- | SINE | Alu | Name=AluSx |
| ADediting_1612213 | chr12_116714551_- | SINE | Alu | Name=AluSx |
| ADediting_1612214 | chr12_116714673_- | SINE | Alu | Name=AluSx |
| ADediting_1612215 | chr12_116714683_- | SINE | Alu | Name=AluSx |
| ADediting_1612216 | chr12_116714709_- | SINE | Alu | Name=AluSx |
| ADediting_1612217 | chr12_116714743_- | SINE | Alu | Name=AluSx |
| ADediting_1612218 | chr12_116715106_- | SINE | Alu | Name=AluSx |
Top |
RNA A-to-I editing events in the alternative splicing sites for C12orf49 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for C12orf49 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
 | |
| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
 |
 |
 |
| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
 |
 |
| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |