ADeditome: functional annotation of RNA A-to-I editing in AD

Gene summary for ACBD4

Gene summary

Gene information	Gene symbol	ACBD4
	Gene ID	79777
	Gene name	acyl-CoA binding domain containing 4
	Synonyms	HMFT0700
	Cytomap	17q21.31
	Type of gene	protein-coding
	Description	acyl-CoA-binding domain-containing protein 4acyl-Coenzyme A binding domain containing 4
	Modification date	20200320
	UniProtAcc	Q8NC06,
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

Top

RNA A-to-I events for ACBD4

RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).

RNA editing frequencies across three data sets.

The number of RNA A-to-I editing events in different types of transcripts (# event, percentage).

RNA A-to-I editing events in AD.

ADediting_629758(45133440, +), ADediting_629759(45133805, +), ADediting_629760(45134172, +), ADediting_629761(45134212, +), ADediting_629762(45134220, +), ADediting_629763(45134241, +), ADediting_629764(45134264, +), ADediting_629765(45134265, +), ADediting_629766(45134277, +), ADediting_629767(45134356, +), ADediting_629768(45134357, +), ADediting_629769(45134362, +), ADediting_629770(45134392, +), ADediting_629771(45134521, +), ADediting_629772(45134522, +), ADediting_629773(45134527, +), ADediting_629774(45134528, +), ADediting_629775(45134557, +), ADediting_629776(45134565, +), ADediting_629777(45134656, +), ADediting_629778(45134722, +), ADediting_629779(45134732, +), ADediting_629780(45135009, +), ADediting_629781(45135030, +), ADediting_629782(45135105, +), ADediting_629783(45135107, +), ADediting_629784(45135146, +), ADediting_629785(45135149, +), ADediting_629786(45135240, +), ADediting_629787(45135246, +), ADediting_629788(45138527, +), ADediting_629789(45138536, +), ADediting_629790(45138614, +), ADediting_629791(45138615, +), ADediting_629792(45138665, +), ADediting_629793(45138668, +), ADediting_629794(45138690, +), ADediting_629795(45138708, +), ADediting_629796(45138713, +), ADediting_629797(45140207, +), ADediting_629798(45140234, +), ADediting_629799(45140237, +), ADediting_629800(45140239, +), ADediting_629801(45140245, +), ADediting_629802(45140248, +), ADediting_629803(45140264, +), ADediting_629804(45140283, +), ADediting_629805(45140284, +), ADediting_629806(45140288, +), ADediting_629807(45140301, +), ADediting_629808(45140313, +), ADediting_629809(45140323, +), ADediting_629810(45140344, +), ADediting_629811(45140357, +), ADediting_629812(45140363, +), ADediting_629813(45140366, +), ADediting_629814(45140380, +), ADediting_629815(45140392, +), ADediting_629816(45140400, +), ADediting_629817(45140403, +), ADediting_629818(45140419, +), ADediting_629819(45140424, +), ADediting_629820(45140433, +), ADediting_629821(45140442, +), ADediting_629822(45140443, +), ADediting_629823(45140455, +), ADediting_629824(45140457, +), ADediting_629825(45140464, +), ADediting_629826(45140561, +), ADediting_629827(45140563, +), ADediting_629828(45140569, +), ADediting_629829(45140570, +), ADediting_629830(45140634, +), ADediting_629831(45140779, +), ADediting_629832(45140798, +), ADediting_629833(45140803, +), ADediting_629834(45140817, +), ADediting_629835(45140829, +), ADediting_629836(45140834, +), ADediting_629837(45140835, +), ADediting_629838(45140836, +), ADediting_629839(45140837, +), ADediting_629840(45140848, +), ADediting_629841(45140851, +), ADediting_629842(45140852, +), ADediting_629843(45140853, +), ADediting_629844(45140854, +), ADediting_629845(45140857, +), ADediting_629846(45140892, +), ADediting_629847(45140893, +), ADediting_629848(45140898, +), ADediting_629849(45140902, +), ADediting_629850(45140906, +), ADediting_629851(45140915, +), ADediting_629852(45140919, +), ADediting_629853(45140925, +), ADediting_629854(45140933, +), ADediting_629855(45140934, +), ADediting_629856(45140935, +), ADediting_629857(45140941, +), ADediting_629858(45140945, +), ADediting_629859(45140958, +), ADediting_629860(45140963, +), ADediting_629861(45140965, +), ADediting_629862(45140978, +), ADediting_629863(45140983, +), ADediting_629864(45140989, +), ADediting_629865(45140993, +), ADediting_629866(45140995, +), ADediting_629867(45140997, +), ADediting_629868(45141000, +), ADediting_629869(45141001, +), ADediting_629870(45141008, +), ADediting_629871(45141424, +), ADediting_629872(45141432, +), ADediting_629873(45141433, +), ADediting_629874(45141455, +), ADediting_629875(45141506, +), ADediting_629876(45141526, +), ADediting_629877(45141574, +), ADediting_629878(45141579, +), ADediting_629879(45141584, +), ADediting_629880(45141641, +), ADediting_629881(45141643, +), ADediting_629882(45142129, +), ADediting_629883(45142137, +), ADediting_629884(45142138, +), ADediting_629885(45142183, +), ADediting_629886(45142203, +), ADediting_629887(45142206, +), ADediting_629888(45142207, +), ADediting_629889(45142216, +), ADediting_629890(45142217, +), ADediting_629891(45142231, +), ADediting_629892(45142232, +), ADediting_629893(45142233, +), ADediting_629894(45142234, +), ADediting_629895(45142235, +), ADediting_629896(45142237, +), ADediting_629897(45142240, +), ADediting_629898(45142243, +), ADediting_629899(45142246, +), ADediting_629900(45142250, +), ADediting_629901(45142262, +), ADediting_629902(45142272, +), ADediting_629903(45142273, +), ADediting_629904(45142278, +), ADediting_629905(45142282, +), ADediting_629906(45142286, +), ADediting_629907(45142305, +), ADediting_629908(45142314, +), ADediting_629909(45142318, +), ADediting_629910(45142338, +), ADediting_629911(45142343, +), ADediting_629912(45142348, +), ADediting_629913(45142358, +), ADediting_629914(45142380, +), ADediting_629915(45142381, +), ADediting_629916(45142587, +), ADediting_629917(45142610, +), ADediting_629918(45142611, +), ADediting_629919(45142620, +), ADediting_629920(45142621, +), ADediting_629921(45142625, +), ADediting_629922(45142630, +), ADediting_629923(45142635, +), ADediting_629924(45142636, +), ADediting_629925(45142656, +), ADediting_629926(45142657, +), ADediting_629927(45142660, +), ADediting_629928(45142661, +), ADediting_629929(45142673, +), ADediting_629930(45142685, +), ADediting_629931(45142692, +), ADediting_629932(45142695, +), ADediting_629933(45142697, +), ADediting_629934(45142705, +), ADediting_629935(45142733, +), ADediting_629936(45142739, +), ADediting_629937(45142742, +), ADediting_629938(45142756, +), ADediting_629939(45142759, +), ADediting_629940(45142788, +), ADediting_629941(45142799, +), ADediting_629942(45142817, +), ADediting_629943(45142818, +), ADediting_629944(45142830, +), ADediting_629945(45142832, +), ADediting_1547119(45134171, +), ADediting_1547120(45134242, +), ADediting_1547121(45134279, +), ADediting_1547122(45134373, +), ADediting_1547123(45134435, +), ADediting_1547124(45140338, +), ADediting_1547125(45140757, +), ADediting_1547126(45140973, +), ADediting_1547127(45141003, +), ADediting_1547128(45142178, +), ADediting_1547129(45142209, +), ADediting_1547130(45142215, +), ADediting_1547131(45142708, +), ADediting_1547132(45142721, +),

Top

RNA editing positional annotations for ACBD4 using Annovar

Protein coding RNA editing(s).

ADeditome ID	Position	Variant type	ENST	NTchange	AAchange	SIFT_score	Polyphen2_HVAR_score	PROVEAN_pred
ADediting_629916	chr17_45142587_+	nonsynonymous SNV	ENST00000619916.4	c.A784G	p.T262A	0.0	0.0	-0.21
ADediting_629916	chr17_45142587_+	nonsynonymous SNV	ENST00000376955.8	c.A784G	p.T262A	0.0	0.0	-0.21
ADediting_629917	chr17_45142610_+	stoploss	ENST00000619916.4	c.A807G	p.X269W	.	.	.
ADediting_629917	chr17_45142610_+	stoploss	ENST00000376955.8	c.A807G	p.X269W	.	.	.

Gene structure information of RNA editing(s).

ADeditome ID	Position	Variant type
ADediting_629758	chr17_45133440_+	intronic
ADediting_629759	chr17_45133805_+	intronic
ADediting_629760	chr17_45134172_+	intronic
ADediting_629761	chr17_45134212_+	intronic
ADediting_629762	chr17_45134220_+	intronic
ADediting_629763	chr17_45134241_+	intronic
ADediting_629764	chr17_45134264_+	intronic
ADediting_629765	chr17_45134265_+	intronic
ADediting_629766	chr17_45134277_+	intronic
ADediting_629767	chr17_45134356_+	intronic
ADediting_629768	chr17_45134357_+	intronic
ADediting_629769	chr17_45134362_+	intronic
ADediting_629770	chr17_45134392_+	intronic
ADediting_629771	chr17_45134521_+	intronic
ADediting_629772	chr17_45134522_+	intronic
ADediting_629773	chr17_45134527_+	intronic
ADediting_629774	chr17_45134528_+	intronic
ADediting_629775	chr17_45134557_+	intronic
ADediting_629776	chr17_45134565_+	intronic
ADediting_629777	chr17_45134656_+	intronic
ADediting_629778	chr17_45134722_+	intronic
ADediting_629779	chr17_45134732_+	intronic
ADediting_629780	chr17_45135009_+	intronic
ADediting_629781	chr17_45135030_+	intronic
ADediting_629782	chr17_45135105_+	intronic
ADediting_629783	chr17_45135107_+	intronic
ADediting_629784	chr17_45135146_+	intronic
ADediting_629785	chr17_45135149_+	intronic
ADediting_629786	chr17_45135240_+	intronic
ADediting_629787	chr17_45135246_+	intronic
ADediting_629788	chr17_45138527_+	intronic
ADediting_629789	chr17_45138536_+	intronic
ADediting_629790	chr17_45138614_+	intronic
ADediting_629791	chr17_45138615_+	intronic
ADediting_629792	chr17_45138665_+	intronic
ADediting_629793	chr17_45138668_+	intronic
ADediting_629794	chr17_45138690_+	intronic
ADediting_629795	chr17_45138708_+	intronic
ADediting_629796	chr17_45138713_+	intronic
ADediting_629797	chr17_45140207_+	intronic
ADediting_629798	chr17_45140234_+	intronic
ADediting_629799	chr17_45140237_+	intronic
ADediting_629800	chr17_45140239_+	intronic
ADediting_629801	chr17_45140245_+	intronic
ADediting_629802	chr17_45140248_+	intronic
ADediting_629803	chr17_45140264_+	intronic
ADediting_629804	chr17_45140283_+	intronic
ADediting_629805	chr17_45140284_+	intronic
ADediting_629806	chr17_45140288_+	intronic
ADediting_629807	chr17_45140301_+	intronic
ADediting_629808	chr17_45140313_+	intronic
ADediting_629809	chr17_45140323_+	intronic
ADediting_629810	chr17_45140344_+	intronic
ADediting_629811	chr17_45140357_+	intronic
ADediting_629812	chr17_45140363_+	intronic
ADediting_629813	chr17_45140366_+	intronic
ADediting_629814	chr17_45140380_+	intronic
ADediting_629815	chr17_45140392_+	intronic
ADediting_629816	chr17_45140400_+	intronic
ADediting_629817	chr17_45140403_+	intronic
ADediting_629818	chr17_45140419_+	intronic
ADediting_629819	chr17_45140424_+	intronic
ADediting_629820	chr17_45140433_+	intronic
ADediting_629821	chr17_45140442_+	intronic
ADediting_629822	chr17_45140443_+	intronic
ADediting_629823	chr17_45140455_+	intronic
ADediting_629824	chr17_45140457_+	intronic
ADediting_629825	chr17_45140464_+	intronic
ADediting_629826	chr17_45140561_+	intronic
ADediting_629827	chr17_45140563_+	intronic
ADediting_629828	chr17_45140569_+	intronic
ADediting_629829	chr17_45140570_+	intronic
ADediting_629830	chr17_45140634_+	intronic
ADediting_629831	chr17_45140779_+	intronic
ADediting_629832	chr17_45140798_+	intronic
ADediting_629833	chr17_45140803_+	intronic
ADediting_629834	chr17_45140817_+	intronic
ADediting_629835	chr17_45140829_+	intronic
ADediting_629836	chr17_45140834_+	intronic
ADediting_629837	chr17_45140835_+	intronic
ADediting_629838	chr17_45140836_+	intronic
ADediting_629839	chr17_45140837_+	intronic
ADediting_629840	chr17_45140848_+	intronic
ADediting_629841	chr17_45140851_+	intronic
ADediting_629842	chr17_45140852_+	intronic
ADediting_629843	chr17_45140853_+	intronic
ADediting_629844	chr17_45140854_+	intronic
ADediting_629845	chr17_45140857_+	intronic
ADediting_629846	chr17_45140892_+	intronic
ADediting_629847	chr17_45140893_+	intronic
ADediting_629848	chr17_45140898_+	intronic
ADediting_629849	chr17_45140902_+	intronic
ADediting_629850	chr17_45140906_+	intronic
ADediting_629851	chr17_45140915_+	intronic
ADediting_629852	chr17_45140919_+	intronic
ADediting_629853	chr17_45140925_+	intronic
ADediting_629854	chr17_45140933_+	intronic
ADediting_629855	chr17_45140934_+	intronic
ADediting_629856	chr17_45140935_+	intronic
ADediting_629857	chr17_45140941_+	intronic
ADediting_629858	chr17_45140945_+	intronic
ADediting_629859	chr17_45140958_+	intronic
ADediting_629860	chr17_45140963_+	intronic
ADediting_629861	chr17_45140965_+	intronic
ADediting_629862	chr17_45140978_+	intronic
ADediting_629863	chr17_45140983_+	intronic
ADediting_629864	chr17_45140989_+	intronic
ADediting_629865	chr17_45140993_+	intronic
ADediting_629866	chr17_45140995_+	intronic
ADediting_629867	chr17_45140997_+	intronic
ADediting_629868	chr17_45141000_+	intronic
ADediting_629869	chr17_45141001_+	intronic
ADediting_629870	chr17_45141008_+	intronic
ADediting_629871	chr17_45141424_+	intronic
ADediting_629872	chr17_45141432_+	intronic
ADediting_629873	chr17_45141433_+	intronic
ADediting_629874	chr17_45141455_+	intronic
ADediting_629875	chr17_45141506_+	intronic
ADediting_629876	chr17_45141526_+	intronic
ADediting_629877	chr17_45141574_+	intronic
ADediting_629878	chr17_45141579_+	intronic
ADediting_629879	chr17_45141584_+	intronic
ADediting_629880	chr17_45141641_+	intronic
ADediting_629881	chr17_45141643_+	intronic
ADediting_629882	chr17_45142129_+	intronic
ADediting_629883	chr17_45142137_+	intronic
ADediting_629884	chr17_45142138_+	intronic
ADediting_629885	chr17_45142183_+	intronic
ADediting_629886	chr17_45142203_+	intronic
ADediting_629887	chr17_45142206_+	intronic
ADediting_629888	chr17_45142207_+	intronic
ADediting_629889	chr17_45142216_+	intronic
ADediting_629890	chr17_45142217_+	intronic
ADediting_629891	chr17_45142231_+	intronic
ADediting_629892	chr17_45142232_+	intronic
ADediting_629893	chr17_45142233_+	intronic
ADediting_629894	chr17_45142234_+	intronic
ADediting_629895	chr17_45142235_+	intronic
ADediting_629896	chr17_45142237_+	intronic
ADediting_629897	chr17_45142240_+	intronic
ADediting_629898	chr17_45142243_+	intronic
ADediting_629899	chr17_45142246_+	intronic
ADediting_629900	chr17_45142250_+	intronic
ADediting_629901	chr17_45142262_+	intronic
ADediting_629902	chr17_45142272_+	intronic
ADediting_629903	chr17_45142273_+	intronic
ADediting_629904	chr17_45142278_+	intronic
ADediting_629905	chr17_45142282_+	intronic
ADediting_629906	chr17_45142286_+	intronic
ADediting_629907	chr17_45142305_+	intronic
ADediting_629908	chr17_45142314_+	intronic
ADediting_629909	chr17_45142318_+	intronic
ADediting_629910	chr17_45142338_+	intronic
ADediting_629911	chr17_45142343_+	intronic
ADediting_629912	chr17_45142348_+	intronic
ADediting_629913	chr17_45142358_+	intronic
ADediting_629914	chr17_45142380_+	intronic
ADediting_629915	chr17_45142381_+	intronic
ADediting_629916	chr17_45142587_+	exonic
ADediting_629917	chr17_45142610_+	exonic
ADediting_629918	chr17_45142611_+	UTR3
ADediting_629919	chr17_45142620_+	UTR3
ADediting_629920	chr17_45142621_+	UTR3
ADediting_629921	chr17_45142625_+	UTR3
ADediting_629922	chr17_45142630_+	UTR3
ADediting_629923	chr17_45142635_+	UTR3
ADediting_629924	chr17_45142636_+	UTR3
ADediting_629925	chr17_45142656_+	UTR3
ADediting_629926	chr17_45142657_+	UTR3
ADediting_629927	chr17_45142660_+	UTR3
ADediting_629928	chr17_45142661_+	UTR3
ADediting_629929	chr17_45142673_+	UTR3
ADediting_629930	chr17_45142685_+	UTR3
ADediting_629931	chr17_45142692_+	UTR3
ADediting_629932	chr17_45142695_+	UTR3
ADediting_629933	chr17_45142697_+	UTR3
ADediting_629934	chr17_45142705_+	UTR3
ADediting_629935	chr17_45142733_+	UTR3
ADediting_629936	chr17_45142739_+	UTR3
ADediting_629937	chr17_45142742_+	UTR3
ADediting_629938	chr17_45142756_+	UTR3
ADediting_629939	chr17_45142759_+	UTR3
ADediting_629940	chr17_45142788_+	UTR3
ADediting_629941	chr17_45142799_+	UTR3
ADediting_629942	chr17_45142817_+	UTR3
ADediting_629943	chr17_45142818_+	UTR3
ADediting_629944	chr17_45142830_+	UTR3
ADediting_629945	chr17_45142832_+	UTR3
ADediting_1547119	chr17_45134171_+	intronic
ADediting_1547120	chr17_45134242_+	intronic
ADediting_1547121	chr17_45134279_+	intronic
ADediting_1547122	chr17_45134373_+	intronic
ADediting_1547123	chr17_45134435_+	intronic
ADediting_1547124	chr17_45140338_+	intronic
ADediting_1547125	chr17_45140757_+	intronic
ADediting_1547126	chr17_45140973_+	intronic
ADediting_1547127	chr17_45141003_+	intronic
ADediting_1547128	chr17_45142178_+	intronic
ADediting_1547129	chr17_45142209_+	intronic
ADediting_1547130	chr17_45142215_+	intronic
ADediting_1547131	chr17_45142708_+	UTR3
ADediting_1547132	chr17_45142721_+	UTR3

Repat-regional RNA editing(s).

ADeditome ID	Position	Repeat family	Repeat sub family	Repeat name
ADediting_629759	chr17_45133805_+	SINE	Alu	Name=AluYa5
ADediting_629760	chr17_45134172_+	SINE	Alu	Name=AluJo
ADediting_629761	chr17_45134212_+	SINE	Alu	Name=AluJo
ADediting_629762	chr17_45134220_+	SINE	Alu	Name=AluJo
ADediting_629763	chr17_45134241_+	SINE	Alu	Name=AluJo
ADediting_629764	chr17_45134264_+	SINE	Alu	Name=AluJo
ADediting_629765	chr17_45134265_+	SINE	Alu	Name=AluJo
ADediting_629766	chr17_45134277_+	SINE	Alu	Name=AluJo
ADediting_629767	chr17_45134356_+	SINE	Alu	Name=AluJr
ADediting_629768	chr17_45134357_+	SINE	Alu	Name=AluJr
ADediting_629769	chr17_45134362_+	SINE	Alu	Name=AluJr
ADediting_629770	chr17_45134392_+	SINE	Alu	Name=AluJr
ADediting_629771	chr17_45134521_+	SINE	Alu	Name=AluY
ADediting_629772	chr17_45134522_+	SINE	Alu	Name=AluY
ADediting_629773	chr17_45134527_+	SINE	Alu	Name=AluY
ADediting_629774	chr17_45134528_+	SINE	Alu	Name=AluY
ADediting_629775	chr17_45134557_+	SINE	Alu	Name=AluY
ADediting_629776	chr17_45134565_+	SINE	Alu	Name=AluY
ADediting_629777	chr17_45134656_+	SINE	Alu	Name=AluY
ADediting_629778	chr17_45134722_+	SINE	Alu	Name=AluY
ADediting_629779	chr17_45134732_+	SINE	Alu	Name=AluY
ADediting_629780	chr17_45135009_+	SINE	Alu	Name=AluSx
ADediting_629781	chr17_45135030_+	SINE	Alu	Name=AluSx
ADediting_629782	chr17_45135105_+	SINE	Alu	Name=AluSx
ADediting_629783	chr17_45135107_+	SINE	Alu	Name=AluSx
ADediting_629784	chr17_45135146_+	SINE	Alu	Name=AluSx
ADediting_629785	chr17_45135149_+	SINE	Alu	Name=AluSx
ADediting_629786	chr17_45135240_+	SINE	Alu	Name=AluSx
ADediting_629787	chr17_45135246_+	SINE	Alu	Name=AluSx
ADediting_629788	chr17_45138527_+	SINE	Alu	Name=AluSx
ADediting_629789	chr17_45138536_+	SINE	Alu	Name=AluSx
ADediting_629790	chr17_45138614_+	SINE	Alu	Name=AluSx
ADediting_629791	chr17_45138615_+	SINE	Alu	Name=AluSx
ADediting_629792	chr17_45138665_+	SINE	Alu	Name=AluSx
ADediting_629793	chr17_45138668_+	SINE	Alu	Name=AluSx
ADediting_629794	chr17_45138690_+	SINE	Alu	Name=AluSx
ADediting_629795	chr17_45138708_+	SINE	Alu	Name=AluSx
ADediting_629796	chr17_45138713_+	SINE	Alu	Name=AluSx
ADediting_629797	chr17_45140207_+	SINE	Alu	Name=AluSc
ADediting_629798	chr17_45140234_+	SINE	Alu	Name=AluSc
ADediting_629799	chr17_45140237_+	SINE	Alu	Name=AluSc
ADediting_629800	chr17_45140239_+	SINE	Alu	Name=AluSc
ADediting_629801	chr17_45140245_+	SINE	Alu	Name=AluSc
ADediting_629802	chr17_45140248_+	SINE	Alu	Name=AluSc
ADediting_629803	chr17_45140264_+	SINE	Alu	Name=AluSc
ADediting_629804	chr17_45140283_+	SINE	Alu	Name=AluSc
ADediting_629805	chr17_45140284_+	SINE	Alu	Name=AluSc
ADediting_629806	chr17_45140288_+	SINE	Alu	Name=AluSc
ADediting_629807	chr17_45140301_+	SINE	Alu	Name=AluSc
ADediting_629808	chr17_45140313_+	SINE	Alu	Name=AluSc
ADediting_629809	chr17_45140323_+	SINE	Alu	Name=AluSc
ADediting_629810	chr17_45140344_+	SINE	Alu	Name=AluSc
ADediting_629811	chr17_45140357_+	SINE	Alu	Name=AluSc
ADediting_629812	chr17_45140363_+	SINE	Alu	Name=AluSc
ADediting_629813	chr17_45140366_+	SINE	Alu	Name=AluSc
ADediting_629814	chr17_45140380_+	SINE	Alu	Name=AluSc
ADediting_629815	chr17_45140392_+	SINE	Alu	Name=AluSc
ADediting_629816	chr17_45140400_+	SINE	Alu	Name=AluSc
ADediting_629817	chr17_45140403_+	SINE	Alu	Name=AluSc
ADediting_629818	chr17_45140419_+	SINE	Alu	Name=AluSc
ADediting_629819	chr17_45140424_+	SINE	Alu	Name=AluSc
ADediting_629820	chr17_45140433_+	SINE	Alu	Name=AluSc
ADediting_629821	chr17_45140442_+	SINE	Alu	Name=AluSc
ADediting_629822	chr17_45140443_+	SINE	Alu	Name=AluSc
ADediting_629823	chr17_45140455_+	SINE	Alu	Name=AluSc
ADediting_629824	chr17_45140457_+	SINE	Alu	Name=AluSc
ADediting_629825	chr17_45140464_+	SINE	Alu	Name=AluSc
ADediting_629826	chr17_45140561_+	Retroposon	SVA	Name=SVA_B,FLAM_C
ADediting_629827	chr17_45140563_+	SINE	Alu	Name=FLAM_C,SVA_B
ADediting_629828	chr17_45140569_+	Retroposon	SVA	Name=SVA_B,FLAM_C
ADediting_629829	chr17_45140570_+	Retroposon	SVA	Name=SVA_B,FLAM_C
ADediting_629830	chr17_45140634_+	SINE	Alu	Name=FLAM_C
ADediting_629831	chr17_45140779_+	SINE	Alu	Name=AluSx1
ADediting_629832	chr17_45140798_+	SINE	Alu	Name=AluSx1
ADediting_629833	chr17_45140803_+	SINE	Alu	Name=AluSx1
ADediting_629834	chr17_45140817_+	SINE	Alu	Name=AluSx1
ADediting_629835	chr17_45140829_+	SINE	Alu	Name=AluSx1
ADediting_629836	chr17_45140834_+	SINE	Alu	Name=AluSx1
ADediting_629837	chr17_45140835_+	SINE	Alu	Name=AluSx1
ADediting_629838	chr17_45140836_+	SINE	Alu	Name=AluSx1
ADediting_629839	chr17_45140837_+	SINE	Alu	Name=AluSx1
ADediting_629840	chr17_45140848_+	SINE	Alu	Name=AluSx1
ADediting_629841	chr17_45140851_+	SINE	Alu	Name=AluSx1
ADediting_629842	chr17_45140852_+	SINE	Alu	Name=AluSx1
ADediting_629843	chr17_45140853_+	SINE	Alu	Name=AluSx1
ADediting_629844	chr17_45140854_+	SINE	Alu	Name=AluSx1
ADediting_629845	chr17_45140857_+	SINE	Alu	Name=AluSx1
ADediting_629846	chr17_45140892_+	SINE	Alu	Name=AluSx1
ADediting_629847	chr17_45140893_+	SINE	Alu	Name=AluSx1
ADediting_629848	chr17_45140898_+	SINE	Alu	Name=AluSx1
ADediting_629849	chr17_45140902_+	SINE	Alu	Name=AluSx1
ADediting_629850	chr17_45140906_+	SINE	Alu	Name=AluSx1
ADediting_629851	chr17_45140915_+	SINE	Alu	Name=AluSx1
ADediting_629852	chr17_45140919_+	SINE	Alu	Name=AluSx1
ADediting_629853	chr17_45140925_+	SINE	Alu	Name=AluSx1
ADediting_629854	chr17_45140933_+	SINE	Alu	Name=AluSx1
ADediting_629855	chr17_45140934_+	SINE	Alu	Name=AluSx1
ADediting_629856	chr17_45140935_+	SINE	Alu	Name=AluSx1
ADediting_629857	chr17_45140941_+	SINE	Alu	Name=AluSx1
ADediting_629858	chr17_45140945_+	SINE	Alu	Name=AluSx1
ADediting_629859	chr17_45140958_+	SINE	Alu	Name=AluSx1
ADediting_629860	chr17_45140963_+	SINE	Alu	Name=AluSx1
ADediting_629861	chr17_45140965_+	SINE	Alu	Name=AluSx1
ADediting_629862	chr17_45140978_+	SINE	Alu	Name=AluSx1
ADediting_629863	chr17_45140983_+	SINE	Alu	Name=AluSx1
ADediting_629864	chr17_45140989_+	SINE	Alu	Name=AluSx1
ADediting_629865	chr17_45140993_+	SINE	Alu	Name=AluSx1
ADediting_629866	chr17_45140995_+	SINE	Alu	Name=AluSx1
ADediting_629867	chr17_45140997_+	SINE	Alu	Name=AluSx1
ADediting_629868	chr17_45141000_+	SINE	Alu	Name=AluSx1
ADediting_629869	chr17_45141001_+	SINE	Alu	Name=AluSx1
ADediting_629870	chr17_45141008_+	SINE	Alu	Name=AluSx1
ADediting_629871	chr17_45141424_+	SINE	Alu	Name=AluJo
ADediting_629872	chr17_45141432_+	SINE	Alu	Name=AluJo
ADediting_629873	chr17_45141433_+	SINE	Alu	Name=AluJo
ADediting_629874	chr17_45141455_+	SINE	Alu	Name=AluJo
ADediting_629875	chr17_45141506_+	SINE	Alu	Name=AluJo
ADediting_629876	chr17_45141526_+	SINE	Alu	Name=AluJo
ADediting_629877	chr17_45141574_+	SINE	Alu	Name=AluJo
ADediting_629878	chr17_45141579_+	SINE	Alu	Name=AluJo
ADediting_629879	chr17_45141584_+	SINE	Alu	Name=AluJo
ADediting_629880	chr17_45141641_+	SINE	Alu	Name=AluJo
ADediting_629881	chr17_45141643_+	SINE	Alu	Name=AluJo
ADediting_629882	chr17_45142129_+	SINE	Alu	Name=AluSx1
ADediting_629883	chr17_45142137_+	SINE	Alu	Name=AluSx1
ADediting_629884	chr17_45142138_+	SINE	Alu	Name=AluSx1
ADediting_629885	chr17_45142183_+	SINE	Alu	Name=AluSx1
ADediting_629886	chr17_45142203_+	SINE	Alu	Name=AluSx1
ADediting_629887	chr17_45142206_+	SINE	Alu	Name=AluSx1
ADediting_629888	chr17_45142207_+	SINE	Alu	Name=AluSx1
ADediting_629889	chr17_45142216_+	SINE	Alu	Name=AluSx1
ADediting_629890	chr17_45142217_+	SINE	Alu	Name=AluSx1
ADediting_629891	chr17_45142231_+	SINE	Alu	Name=AluSx1
ADediting_629892	chr17_45142232_+	SINE	Alu	Name=AluSx1
ADediting_629893	chr17_45142233_+	SINE	Alu	Name=AluSx1
ADediting_629894	chr17_45142234_+	SINE	Alu	Name=AluSx1
ADediting_629895	chr17_45142235_+	SINE	Alu	Name=AluSx1
ADediting_629896	chr17_45142237_+	SINE	Alu	Name=AluSx1
ADediting_629897	chr17_45142240_+	SINE	Alu	Name=AluSx1
ADediting_629898	chr17_45142243_+	SINE	Alu	Name=AluSx1
ADediting_629899	chr17_45142246_+	SINE	Alu	Name=AluSx1
ADediting_629900	chr17_45142250_+	SINE	Alu	Name=AluSx1
ADediting_629901	chr17_45142262_+	SINE	Alu	Name=AluSx1
ADediting_629902	chr17_45142272_+	SINE	Alu	Name=AluSx1
ADediting_629903	chr17_45142273_+	SINE	Alu	Name=AluSx1
ADediting_629904	chr17_45142278_+	SINE	Alu	Name=AluSx1
ADediting_629905	chr17_45142282_+	SINE	Alu	Name=AluSx1
ADediting_629906	chr17_45142286_+	SINE	Alu	Name=AluSx1
ADediting_629907	chr17_45142305_+	SINE	Alu	Name=AluSx1
ADediting_629908	chr17_45142314_+	SINE	Alu	Name=AluSx1
ADediting_629909	chr17_45142318_+	SINE	Alu	Name=AluSx1
ADediting_629910	chr17_45142338_+	SINE	Alu	Name=AluSx1
ADediting_629911	chr17_45142343_+	SINE	Alu	Name=AluSx1
ADediting_629912	chr17_45142348_+	SINE	Alu	Name=AluSx1
ADediting_629913	chr17_45142358_+	SINE	Alu	Name=AluSx1
ADediting_629914	chr17_45142380_+	SINE	Alu	Name=AluSx1
ADediting_629915	chr17_45142381_+	SINE	Alu	Name=AluSx1
ADediting_629916	chr17_45142587_+	SINE	Alu	Name=AluSg7
ADediting_629917	chr17_45142610_+	SINE	Alu	Name=AluSg7
ADediting_629918	chr17_45142611_+	SINE	Alu	Name=AluSg7
ADediting_629919	chr17_45142620_+	SINE	Alu	Name=AluSg7
ADediting_629920	chr17_45142621_+	SINE	Alu	Name=AluSg7
ADediting_629921	chr17_45142625_+	SINE	Alu	Name=AluSg7
ADediting_629922	chr17_45142630_+	SINE	Alu	Name=AluSg7
ADediting_629923	chr17_45142635_+	SINE	Alu	Name=AluSg7
ADediting_629924	chr17_45142636_+	SINE	Alu	Name=AluSg7
ADediting_629925	chr17_45142656_+	SINE	Alu	Name=AluSg7
ADediting_629926	chr17_45142657_+	SINE	Alu	Name=AluSg7
ADediting_629927	chr17_45142660_+	SINE	Alu	Name=AluSg7
ADediting_629928	chr17_45142661_+	SINE	Alu	Name=AluSg7
ADediting_629929	chr17_45142673_+	SINE	Alu	Name=AluSg7
ADediting_629930	chr17_45142685_+	SINE	Alu	Name=AluSg7
ADediting_629931	chr17_45142692_+	SINE	Alu	Name=AluSg7
ADediting_629932	chr17_45142695_+	SINE	Alu	Name=AluSg7
ADediting_629933	chr17_45142697_+	SINE	Alu	Name=AluSg7
ADediting_629934	chr17_45142705_+	SINE	Alu	Name=AluSg7
ADediting_629935	chr17_45142733_+	SINE	Alu	Name=AluSg7
ADediting_629936	chr17_45142739_+	SINE	Alu	Name=AluSg7
ADediting_629937	chr17_45142742_+	SINE	Alu	Name=AluSg7
ADediting_629938	chr17_45142756_+	SINE	Alu	Name=AluSg7
ADediting_629939	chr17_45142759_+	SINE	Alu	Name=AluSg7
ADediting_629940	chr17_45142788_+	SINE	Alu	Name=AluSg7
ADediting_629941	chr17_45142799_+	SINE	Alu	Name=AluSg7
ADediting_629942	chr17_45142817_+	SINE	Alu	Name=AluSg7
ADediting_629943	chr17_45142818_+	SINE	Alu	Name=AluSg7
ADediting_629944	chr17_45142830_+	SINE	Alu	Name=AluSg7
ADediting_629945	chr17_45142832_+	SINE	Alu	Name=AluSg7
ADediting_1547119	chr17_45134171_+	SINE	Alu	Name=AluJo
ADediting_1547120	chr17_45134242_+	SINE	Alu	Name=AluJo
ADediting_1547121	chr17_45134279_+	SINE	Alu	Name=AluJo
ADediting_1547122	chr17_45134373_+	SINE	Alu	Name=AluJr
ADediting_1547123	chr17_45134435_+	SINE	Alu	Name=AluJr
ADediting_1547124	chr17_45140338_+	SINE	Alu	Name=AluSc
ADediting_1547125	chr17_45140757_+	SINE	Alu	Name=AluSx1
ADediting_1547126	chr17_45140973_+	SINE	Alu	Name=AluSx1
ADediting_1547127	chr17_45141003_+	SINE	Alu	Name=AluSx1
ADediting_1547128	chr17_45142178_+	SINE	Alu	Name=AluSx1
ADediting_1547129	chr17_45142209_+	SINE	Alu	Name=AluSx1
ADediting_1547130	chr17_45142215_+	SINE	Alu	Name=AluSx1
ADediting_1547131	chr17_45142708_+	SINE	Alu	Name=AluSg7
ADediting_1547132	chr17_45142721_+	SINE	Alu	Name=AluSg7

Top

RNA A-to-I editing events in the alternative splicing sites for ACBD4

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

ADeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for ACBD4

Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

- Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

ADeditome ID

Chr

Positoing

Skipped exon

ENSG

ENSTs

Top

Protein coding region RNA A-to-I editings for ACBD4

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

Top

The effects of the RNA editing to the miRNA binding sites for ACBD4

RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

ADeditom_ID	Position	ENSG	ENST	Transcript name	miRNA ID	Chromosome	Targt	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
ADediting_1547131	chr17_45142708_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-6786-5p	chr17	45142701	45142707	7mer-m8	45142687	45142708	148	-25.3
ADediting_1547132	chr17_45142721_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-34a-3p	chr17	45142717	45142723	7mer-m8	45142702	45142724	145	-11.29
ADediting_629924	chr17_45142636_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-17-3p	chr17	45142629	45142635	7mer-m8	45142615	45142636	150	-17.16
ADediting_629924	chr17_45142636_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-485-5p	chr17	45142633	45142639	7mer-m8	45142618	45142640	157	-19.47
ADediting_629924	chr17_45142636_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-6884-5p	chr17	45142633	45142639	7mer-m8	45142618	45142640	152	-24.34
ADediting_629928	chr17_45142661_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-146a-5p	chr17	45142659	45142665	7mer-m8	45142644	45142666	147	-22.55
ADediting_629928	chr17_45142661_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-146b-5p	chr17	45142659	45142665	7mer-m8	45142644	45142666	145	-17.72
ADediting_629928	chr17_45142661_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-7153-5p	chr17	45142659	45142665	7mer-m8	45142643	45142666	146	-19.88
ADediting_629929	chr17_45142673_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-6089	chr17	45142671	45142677	7mer-m8	45142655	45142678	166	-36.1
ADediting_629930	chr17_45142685_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-4691-3p	chr17	45142682	45142688	7mer-m8	45142662	45142689	150	-26.62
ADediting_629934	chr17_45142705_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-4767	chr17	45142699	45142705	7mer-m8	45142684	45142706	153	-26.31
ADediting_629934	chr17_45142705_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-6499-5p	chr17	45142698	45142704	7mer-m8	45142682	45142705	142	-20.92
ADediting_629939	chr17_45142759_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-433-5p	chr17	45142753	45142759	7mer-m8	45142737	45142760	163	-25.86
ADediting_629940	chr17_45142788_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-665	chr17	45142781	45142787	7mer-m8	45142769	45142788	157	-22.68
ADediting_629941	chr17_45142799_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-3937	chr17	45142796	45142802	7mer-m8	45142781	45142803	141	-22.65
ADediting_629942	chr17_45142817_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-326	chr17	45142812	45142818	7mer-m8	45142800	45142819	140	-14.6
ADediting_629942	chr17_45142817_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-330-5p	chr17	45142812	45142818	7mer-m8	45142798	45142819	140	-21.93
ADediting_629942	chr17_45142817_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-4314	chr17	45142811	45142817	7mer-m8	45142801	45142818	140	-21.61
ADediting_629942	chr17_45142817_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-514a-5p	chr17	45142813	45142819	7mer-m8	45142797	45142820	146	-18.62
ADediting_629943	chr17_45142818_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-3189-3p	chr17	45142812	45142818	7mer-m8	45142796	45142819	149	-26.69
ADediting_629943	chr17_45142818_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-6813-3p	chr17	45142813	45142819	7mer-m8	45142800	45142820	140	-12.15
ADediting_629944	chr17_45142830_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-4722-3p	chr17	45142827	45142833	7mer-m8	45142813	45142834	150	-23.23
ADediting_629944	chr17_45142830_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-4763-5p	chr17	45142828	45142834	7mer-m8	45142816	45142835	148	-26.91
ADediting_629944	chr17_45142830_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-4769-3p	chr17	45142826	45142832	7mer-m8	45142812	45142833	152	-19.83
ADediting_629944	chr17_45142830_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-6727-3p	chr17	45142827	45142833	7mer-m8	45142815	45142834	148	-21.6
ADediting_629944	chr17_45142830_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-6817-5p	chr17	45142826	45142832	7mer-m8	45142807	45142833	148	-24.37

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

ADeditom_ID	Position	ENSG	ENST	Transcript name	miRNA ID	Chromosome	Targt	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
ADediting_629923	chr17_45142635_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-377-5p	chr17	45142633	45142639	7mer-m8	45142618	45142640	155	-17.52
ADediting_629923	chr17_45142635_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-6086	chr17	45142633	45142639	7mer-m8	45142621	45142640	150	-23.6
ADediting_629923	chr17_45142635_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-6516-5p	chr17	45142629	45142635	7mer-m8	45142615	45142636	145	-13.24
ADediting_629924	chr17_45142636_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-377-5p	chr17	45142633	45142639	7mer-m8	45142618	45142640	155	-17.52
ADediting_629924	chr17_45142636_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-6086	chr17	45142633	45142639	7mer-m8	45142621	45142640	150	-23.6
ADediting_629924	chr17_45142636_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-6516-5p	chr17	45142629	45142635	7mer-m8	45142615	45142636	145	-13.24
ADediting_629927	chr17_45142660_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-219b-3p	chr17	45142657	45142663	7mer-m8	45142644	45142664	153	-15.53
ADediting_629927	chr17_45142660_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-302f	chr17	45142656	45142662	7mer-m8	45142647	45142663	145	-8.09
ADediting_629928	chr17_45142661_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-219b-3p	chr17	45142657	45142663	7mer-m8	45142644	45142664	153	-15.53
ADediting_629928	chr17_45142661_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-302f	chr17	45142656	45142662	7mer-m8	45142647	45142663	145	-8.09
ADediting_629929	chr17_45142673_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-3929	chr17	45142670	45142676	7mer-m8	45142654	45142677	151	-19.71
ADediting_629929	chr17_45142673_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-4478	chr17	45142670	45142676	7mer-m8	45142660	45142677	154	-24.76
ADediting_629929	chr17_45142673_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-4649-3p	chr17	45142667	45142673	7mer-m8	45142654	45142674	140	-12.17
ADediting_629929	chr17_45142673_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-485-5p	chr17	45142671	45142677	7mer-m8	45142658	45142678	151	-18.72
ADediting_629929	chr17_45142673_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-7160-5p	chr17	45142668	45142674	7mer-m8	45142656	45142675	145	-18.66
ADediting_629930	chr17_45142685_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-5690	chr17	45142682	45142688	7mer-m8	45142669	45142689	145	-16.75
ADediting_629931	chr17_45142692_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-7977	chr17	45142685	45142691	7mer-m8	45142675	45142692	142	-14.06
ADediting_629933	chr17_45142697_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-6720-3p	chr17	45142695	45142701	7mer-m8	45142681	45142702	148	-18.9
ADediting_629934	chr17_45142705_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-541-3p	chr17	45142700	45142707	8mer-1a	45142684	45142707	147	-22.35
ADediting_629934	chr17_45142705_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-654-5p	chr17	45142700	45142707	8mer-1a	45142687	45142707	144	-21.31
ADediting_629939	chr17_45142759_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-4426	chr17	45142756	45142762	7mer-m8	45142747	45142763	143	-10.94
ADediting_629939	chr17_45142759_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-4647	chr17	45142756	45142762	7mer-m8	45142741	45142763	154	-18.69
ADediting_629939	chr17_45142759_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-4662b	chr17	45142756	45142762	7mer-m8	45142742	45142763	144	-10.75
ADediting_629941	chr17_45142799_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-323a-5p	chr17	45142794	45142800	7mer-m8	45142776	45142801	153	-27.49
ADediting_629941	chr17_45142799_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-3665	chr17	45142797	45142803	7mer-m8	45142782	45142804	142	-23.23
ADediting_629941	chr17_45142799_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-5587-5p	chr17	45142792	45142798	7mer-m8	45142782	45142799	140	-16.22
ADediting_629942	chr17_45142817_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-887-5p	chr17	45142810	45142817	8mer-1a	45142796	45142817	148	-16.01
ADediting_629944	chr17_45142830_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-214-5p	chr17	45142828	45142834	7mer-m8	45142813	45142835	143	-18.34
ADediting_629944	chr17_45142830_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-215-3p	chr17	45142826	45142832	7mer-m8	45142811	45142833	147	-16.4
ADediting_629945	chr17_45142832_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-214-5p	chr17	45142828	45142834	7mer-m8	45142813	45142835	143	-18.34
ADediting_629945	chr17_45142832_+	ENSG00000181513.14	ENST00000376955.8	ACBD4-202	hsa-miR-215-3p	chr17	45142826	45142832	7mer-m8	45142811	45142833	147	-16.4

RNA A-to-I editing in lncRNA gained miRNA binding sites.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

ADediting_629788

chr17_45138527_+

ENSG00000181513.14

ENST00000591136.1

ACBD4-213

hsa-miR-4634

chr17

45138525

45138531

7mer-m8

45138509

45138532

151

-32.12

ADediting_629789

chr17_45138536_+

ENSG00000181513.14

ENST00000591136.1

ACBD4-213

hsa-miR-8052

chr17

45138535

45138541

7mer-1a

45138523

45138541

140

-24.15

RNA A-to-I editing in lncRNA lost miRNA binding sites.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

ADediting_629788

chr17_45138527_+

ENSG00000181513.14

ENST00000591136.1

ACBD4-213

hsa-miR-6807-5p

chr17

45138521

45138527

7mer-m8

45138506

45138528

144

-23.43

ADediting_629789

chr17_45138536_+

ENSG00000181513.14

ENST00000591136.1

ACBD4-213

hsa-miR-10399-5p

chr17

45138531

45138537

7mer-m8

45138517

45138538

144

-11.61

ADediting_629789

chr17_45138536_+

ENSG00000181513.14

ENST00000591136.1

ACBD4-213

hsa-miR-5089-5p

chr17

45138535

45138541

7mer-m8

45138520

45138542

148

-14.13

ADediting_629789

chr17_45138536_+

ENSG00000181513.14

ENST00000591136.1

ACBD4-213

hsa-miR-6504-3p

chr17

45138531

45138537

7mer-m8

45138517

45138538

152

-14.52

RNA A-to-I editing in miRNAs gained binding to lncRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

ADediting_496066

chr15_66496985_-

ENSG00000181513.14

ENST00000321854.12

ACBD4-201

hsa-miR-4512

chr17

45144036

45144042

7mer-m8

45144022

45144043

144

-29.85

ADediting_496066

chr15_66496985_-

ENSG00000181513.14

ENST00000398322.7

ACBD4-203

hsa-miR-4512

chr17

45144036

45144042

7mer-m8

45144022

45144043

144

-29.85

ADediting_496066

chr15_66496985_-

ENSG00000181513.14

ENST00000431281.5

ACBD4-204

hsa-miR-4512

chr17

45144036

45144042

7mer-m8

45144022

45144043

144

-29.85

ADediting_496066

chr15_66496985_-

ENSG00000181513.14

ENST00000591859.5

ACBD4-214

hsa-miR-4512

chr17

45144036

45144042

7mer-m8

45144022

45144043

144

-29.85

ADediting_496066

chr15_66496985_-

ENSG00000181513.14

ENST00000592162.5

ACBD4-215

hsa-miR-4512

chr17

45144036

45144042

7mer-m8

45144022

45144043

144

-29.85

ADediting_98289

chr1_32086992_+

ENSG00000181513.14

ENST00000376955.8

ACBD4-202

hsa-miR-5585-3p

chr17

45142899

45142906

8mer-1a

45142885

45142906

149

-14.24

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

Differentially expressed mRNA-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for ACBD4

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000619916.4	protein_coding
ENST00000376955.8	protein_coding
ENST00000591136.1	lncRNA

RNA A-to-I editing in miRNA.

ADeditom_ID

ENST

mir_ID

Editing_Information

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

RNA A-to-I editing in mRNA.

ADeditom_ID	ENST	Editing_Information	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
ADediting_629916	ENST00000619916.4	chr17_45142587_+	1253	-523.20	-523.60	-522.70
ADediting_629917	ENST00000619916.4	chr17_45142610_+	1276	-523.10	-523.60	-522.70
ADediting_629916	ENST00000376955.8	chr17_45142587_+	1081	-571.10	-570.10	-624.30
ADediting_629917	ENST00000376955.8	chr17_45142610_+	1104	-572.00	-570.10	-624.30
ADediting_629918	ENST00000376955.8	chr17_45142611_+	1105	-573.10	-570.10	-624.30
ADediting_629919	ENST00000376955.8	chr17_45142620_+	1114	-572.00	-570.10	-624.30
ADediting_629920	ENST00000376955.8	chr17_45142621_+	1115	-574.50	-570.10	-624.30
ADediting_629921	ENST00000376955.8	chr17_45142625_+	1119	-572.70	-570.10	-624.30
ADediting_629922	ENST00000376955.8	chr17_45142630_+	1124	-571.90	-570.10	-624.30
ADediting_629923	ENST00000376955.8	chr17_45142635_+	1129	-572.80	-570.10	-624.30
ADediting_629924	ENST00000376955.8	chr17_45142636_+	1130	-572.50	-570.10	-624.30
ADediting_629925	ENST00000376955.8	chr17_45142656_+	1150	-571.30	-570.10	-624.30
ADediting_629926	ENST00000376955.8	chr17_45142657_+	1151	-574.70	-570.10	-624.30
ADediting_629927	ENST00000376955.8	chr17_45142660_+	1154	-570.10	-570.10	-624.30
ADediting_629928	ENST00000376955.8	chr17_45142661_+	1155	-572.00	-570.10	-624.30
ADediting_629929	ENST00000376955.8	chr17_45142673_+	1167	-574.70	-570.10	-624.30
ADediting_629930	ENST00000376955.8	chr17_45142685_+	1179	-571.70	-570.10	-624.30
ADediting_629931	ENST00000376955.8	chr17_45142692_+	1186	-571.70	-570.10	-624.30
ADediting_629932	ENST00000376955.8	chr17_45142695_+	1189	-573.10	-570.10	-624.30
ADediting_629933	ENST00000376955.8	chr17_45142697_+	1191	-571.80	-570.10	-624.30
ADediting_629934	ENST00000376955.8	chr17_45142705_+	1199	-573.50	-570.10	-624.30
ADediting_1547131	ENST00000376955.8	chr17_45142708_+	1202	-573.70	-570.10	-624.30
ADediting_1547132	ENST00000376955.8	chr17_45142721_+	1215	-570.90	-570.10	-624.30
ADediting_629935	ENST00000376955.8	chr17_45142733_+	1227	-572.40	-570.10	-624.30
ADediting_629936	ENST00000376955.8	chr17_45142739_+	1233	-572.50	-570.10	-624.30
ADediting_629937	ENST00000376955.8	chr17_45142742_+	1236	-575.50	-570.10	-624.30
ADediting_629938	ENST00000376955.8	chr17_45142756_+	1250	-573.30	-570.10	-624.30
ADediting_629939	ENST00000376955.8	chr17_45142759_+	1253	-575.40	-570.10	-624.30
ADediting_629940	ENST00000376955.8	chr17_45142788_+	1282	-569.60	-570.10	-624.30
ADediting_629941	ENST00000376955.8	chr17_45142799_+	1293	-570.90	-570.10	-624.30
ADediting_629942	ENST00000376955.8	chr17_45142817_+	1311	-572.40	-570.10	-624.30
ADediting_629943	ENST00000376955.8	chr17_45142818_+	1312	-571.40	-570.10	-624.30
ADediting_629944	ENST00000376955.8	chr17_45142830_+	1324	-575.60	-570.10	-624.30
ADediting_629945	ENST00000376955.8	chr17_45142832_+	1326	-571.10	-570.10	-624.30

RNA A-to-I editing in lncRNA.

ADeditom_ID	ENST	Editing_Information	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
ADediting_629788	ENST00000591136.1	chr17_45138527_+	845	-296.60	-295.60	-296.40
ADediting_629789	ENST00000591136.1	chr17_45138536_+	854	-295.40	-295.60	-296.40

Top

Relation with ADAR for ACBD4

Correlation between ADAR gene expression and RNA editing frequency

Tissue	ADeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
DLPFC	ADediting_629765	chr17_45134265_+	2.38198672156398e-05	0.237519813082288	0.00494507290918554	0.159254143323963	3.95584679380564e-09	0.326421334579215
DLPFC	ADediting_629766	chr17_45134277_+	4.31222578700458e-05	0.230105825956744	0.00681678597503386	0.153380711450384	5.3905425255181e-08	0.30279595730601
DLPFC	ADediting_629768	chr17_45134357_+	0.000308176498499647	0.203610895330102	0.0212440506752947	0.130802565498472	3.82390496367264e-08	0.306022562932813
DLPFC	ADediting_629786	chr17_45135240_+	1.06302154007904e-13	0.405519198216093	2.31785908975725e-11	0.367750843599598	6.21511996613274e-05	0.225416407505559
DLPFC	ADediting_629787	chr17_45135246_+	1.77939138565313e-09	0.333257572066496	1.07726702033273e-08	0.317601812227724	0.000622875615979722	0.193270859868262
DLPFC	ADediting_629796	chr17_45138713_+	0.0945012363788102	0.0951386759862258	0.422780400846448	0.0456890028934793	1.43587540221472e-08	0.315018610315144
DLPFC	ADediting_629797	chr17_45140207_+	0.165573744768277	0.0789476938491409	0.938505760356878	-0.00439946697243412	2.05183454620213e-11	0.368662027626613
CER	ADediting_629812	chr17_45140363_+	5.49649321517681e-05	0.323152418199943	0.019576735922788	0.190445222307283	0.209052483692417	-0.103155356572646
CER	ADediting_629814	chr17_45140380_+	0.000109250915448759	0.310654511873533	0.102705938458631	0.133761497562768	0.182685250672462	-0.109389117398902
CER	ADediting_629822	chr17_45140443_+	5.40750867466199e-06	0.361739842815311	0.000104125859482737	0.311546843590058	0.780345815214313	0.022958567318558
CER	ADediting_629840	chr17_45140848_+	8.82432944076237e-06	0.35400317911707	0.000463860763033323	0.282362242128785	0.079921209591741	0.143439872137478
CER	ADediting_629847	chr17_45140893_+	6.19049096898988e-05	0.321028168244349	0.00506692295387268	0.227733554127165	0.272481390843113	0.0901712262820289
CER	ADediting_629862	chr17_45140978_+	6.88360909747394e-05	0.319118681341537	0.00754127623173755	0.217366985143259	0.537920158506098	0.0506846778560033
DLPFC	ADediting_629914	chr17_45142380_+	0.128070544790096	-0.0866172634727823	0.00571429148784608	-0.156632676313533	2.07681408566811e-08	0.311664248063896
DLPFC	ADediting_629942	chr17_45142817_+	0.000231365280814535	0.207680780335672	2.1762259866237e-08	0.311236283867384	0.0517239962897027	0.110600240624635
DLPFC	ADediting_629944	chr17_45142830_+	0.00130875701265058	0.18175734081431	5.96595365676143e-09	0.322838485919018	0.027194876484511	0.125457033585642

Correlation between ADAR gene expression and this gene's expression

Tissue	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
DLPFC	2.26518295641134e-14	0.415530795536333	1.18838280572845e-11	0.372709278453275	4.5990163218142e-49	0.711208198394785
AC	3.75530334915134e-49	0.764263271943491	1.03609784285569e-31	0.652499357675394	9.23062638674393e-26	0.599253315250909
PCC	1.64898798020561e-21	0.618057762608448	1.33894461874047e-17	0.566426001582673	8.98454532575419e-10	0.424898843204693
TCX	0.000392270870785116	0.285796026080316	5.3827063798342e-07	0.395719399677686	0.412133006521389	0.0674525829490121
FP	9.65025411350896e-08	0.386795352848551	0.362778906043558	0.0686165645837566	2.88376058446831e-08	0.401097433037153
IFG	2.38641992968065e-06	0.792054688801677	1.39905343551343e-06	0.802435024156333	0.270239461684519	0.229286994161223
PG	0.925633987460363	0.00689034047783709	0.965199468925702	0.00322079890464555	3.07090036664494e-06	0.334478100607805
STG	0.00132423460863403	0.344677157058829	0.330275935695789	0.107526703804462	1.34020778928263e-05	0.455478166558405

Top

Relation with AD stages for ACBD4

Correlation between AD stages and RNA editing frequency

Tissue

ADeditomID

position

P-val

Coeff.

Correlation between AD stages and this gene's expression

Tissue	P-val	Coeff.
TCX	0.00158273434751977	0.303175303836948

Top

RelatedDrugs for ACBD4

Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

Top

RelatedDiseases for ACBD4

Diseases associated with this gene.
(DisGeNet 4.0)

Gene	Disease ID	Disease name	# pubmeds	Source
ACBD4	C0023893	Liver Cirrhosis, Experimental	1	CTD_human

Home

Download

Statistics

Landscape

Help

Contact

Gene summary for ACBD4

RNA A-to-I events for ACBD4

RNA editing positional annotations for ACBD4 using Annovar

RNA A-to-I editing events in the alternative splicing sites for ACBD4

Differntial gene expression between RNA A-to-I edited versus non-edited samples for ACBD4

Protein coding region RNA A-to-I editings for ACBD4

The effects of the RNA editing to the miRNA binding sites for ACBD4

The effects of the RNA editing to the stability of the RNA structures for ACBD4

Relation with ADAR for ACBD4

Relation with AD stages for ACBD4

RelatedDrugs for ACBD4

RelatedDiseases for ACBD4

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited versus non-edited samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with AD stages
	Related drugs with this gene
	Related diseases with this gene