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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited versus non-edited samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with AD stages

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene


Gene summary for SH3D21

check button Gene summary
Gene informationGene symbol

SH3D21

Gene ID

79729

Gene nameSH3 domain containing 21
SynonymsC1orf113
Cytomap

1p34.3

Type of geneprotein-coding
DescriptionSH3 domain-containing protein 21SH3 domain-containing protein C1orf113
Modification date20200313
UniProtAcc

A4FU49,

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for SH3D21

check buttonRNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
all structure

check button RNA editing frequencies across three data sets.
boxplot

check buttonThe number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
boxplot

check button RNA A-to-I editing events in AD.
ADediting_106466(36310019, +), ADediting_106467(36310161, +), ADediting_106468(36310176, +), ADediting_106469(36310206, +), ADediting_106470(36310228, +), ADediting_106471(36310231, +), ADediting_106472(36310358, +), ADediting_106473(36310359, +), ADediting_106474(36310380, +), ADediting_106475(36310381, +), ADediting_106476(36310386, +), ADediting_106477(36310412, +), ADediting_106478(36310435, +), ADediting_106479(36310449, +), ADediting_106480(36310456, +), ADediting_106481(36310463, +), ADediting_106482(36310473, +), ADediting_106483(36310494, +), ADediting_106484(36310495, +), ADediting_106485(36310521, +), ADediting_106486(36310530, +), ADediting_106487(36310536, +), ADediting_106488(36310570, +), ADediting_106489(36310590, +), ADediting_106490(36310972, +), ADediting_106491(36311002, +), ADediting_106492(36311095, +), ADediting_106493(36312230, +), ADediting_106494(36312297, +), ADediting_106495(36312754, +), ADediting_106496(36312780, +), ADediting_106497(36312815, +), ADediting_106498(36312897, +), ADediting_106499(36312903, +), ADediting_106500(36312911, +), ADediting_106501(36312914, +), ADediting_106502(36312974, +), ADediting_106503(36312986, +), ADediting_106504(36313069, +), ADediting_106505(36313070, +), ADediting_106506(36313114, +), ADediting_106507(36314657, +), ADediting_106508(36315099, +), ADediting_106509(36315120, +), ADediting_106510(36315129, +), ADediting_106511(36315132, +), ADediting_106512(36315149, +), ADediting_106513(36315161, +), ADediting_106514(36315406, +), ADediting_106515(36315411, +), ADediting_106516(36315489, +), ADediting_106517(36315491, +), ADediting_106518(36315495, +), ADediting_106519(36315546, +), ADediting_106520(36315558, +), ADediting_106521(36315596, +), ADediting_106522(36316291, +), ADediting_106523(36317581, +), ADediting_106524(36317681, +), ADediting_106525(36317703, +), ADediting_106526(36317738, +), ADediting_106527(36317747, +), ADediting_106528(36317761, +), ADediting_106529(36317764, +), ADediting_106530(36317773, +), ADediting_106531(36317811, +), ADediting_106532(36317826, +), ADediting_106533(36317838, +), ADediting_106534(36318521, +), ADediting_106535(36318543, +), ADediting_106536(36318658, +), ADediting_106537(36318674, +), ADediting_106538(36318719, +), ADediting_106539(36318734, +), ADediting_106540(36318788, +), ADediting_106541(36318829, +), ADediting_106542(36318830, +), ADediting_106543(36318841, +), ADediting_106544(36324535, +), ADediting_106545(36325079, +), ADediting_106546(36325105, +), ADediting_106547(36325116, +), ADediting_106548(36325117, +), ADediting_106549(36325182, +), ADediting_106550(36325588, +), ADediting_106551(36325595, +), ADediting_106552(36325662, +), ADediting_106553(36325751, +), ADediting_106554(36325806, +), ADediting_106555(36325818, +), ADediting_106556(36326288, +), ADediting_106557(36326312, +), ADediting_106558(36326349, +), ADediting_106559(36327697, +), ADediting_106560(36328507, +), ADediting_106561(36328515, +), ADediting_106562(36328516, +), ADediting_106563(36328521, +), ADediting_106564(36328524, +), ADediting_106565(36328546, +), ADediting_106566(36328556, +), ADediting_106567(36328561, +), ADediting_106568(36328564, +), ADediting_106569(36328585, +), ADediting_106570(36328595, +), ADediting_106571(36328619, +), ADediting_106572(36328621, +), ADediting_106573(36328622, +), ADediting_106574(36328625, +), ADediting_106575(36328638, +), ADediting_106576(36328641, +), ADediting_106577(36328645, +), ADediting_106578(36328649, +), ADediting_106579(36328651, +), ADediting_106580(36328665, +), ADediting_106581(36328673, +), ADediting_106582(36328674, +), ADediting_106583(36328697, +), ADediting_106584(36328705, +), ADediting_106585(36328711, +), ADediting_106586(36328732, +), ADediting_106587(36328737, +), ADediting_106588(36328742, +), ADediting_106589(36328749, +), ADediting_106590(36328754, +), ADediting_106591(36328759, +), ADediting_1519764(36309377, +), ADediting_1519765(36309380, +), ADediting_1519766(36309407, +), ADediting_1519767(36311811, +), ADediting_1519768(36316949, +), ADediting_1519769(36325089, +), ADediting_1519770(36326361, +), ADediting_1519771(36328570, +), ADediting_1519772(36328572, +), ADediting_1600704(36314637, +), ADediting_1600705(36328616, +),

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RNA editing positional annotations for SH3D21 using Annovar

check button Protein coding RNA editing(s).
ADeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
ADeditome IDPositionVariant type
ADediting_106466chr1_36310019_+intronic
ADediting_106467chr1_36310161_+intronic
ADediting_106468chr1_36310176_+intronic
ADediting_106469chr1_36310206_+intronic
ADediting_106470chr1_36310228_+intronic
ADediting_106471chr1_36310231_+intronic
ADediting_106472chr1_36310358_+intronic
ADediting_106473chr1_36310359_+intronic
ADediting_106474chr1_36310380_+intronic
ADediting_106475chr1_36310381_+intronic
ADediting_106476chr1_36310386_+intronic
ADediting_106477chr1_36310412_+intronic
ADediting_106478chr1_36310435_+intronic
ADediting_106479chr1_36310449_+intronic
ADediting_106480chr1_36310456_+intronic
ADediting_106481chr1_36310463_+intronic
ADediting_106482chr1_36310473_+intronic
ADediting_106483chr1_36310494_+intronic
ADediting_106484chr1_36310495_+intronic
ADediting_106485chr1_36310521_+intronic
ADediting_106486chr1_36310530_+intronic
ADediting_106487chr1_36310536_+intronic
ADediting_106488chr1_36310570_+intronic
ADediting_106489chr1_36310590_+intronic
ADediting_106490chr1_36310972_+intronic
ADediting_106491chr1_36311002_+intronic
ADediting_106492chr1_36311095_+intronic
ADediting_106493chr1_36312230_+intronic
ADediting_106494chr1_36312297_+intronic
ADediting_106495chr1_36312754_+intronic
ADediting_106496chr1_36312780_+intronic
ADediting_106497chr1_36312815_+intronic
ADediting_106498chr1_36312897_+intronic
ADediting_106499chr1_36312903_+intronic
ADediting_106500chr1_36312911_+intronic
ADediting_106501chr1_36312914_+intronic
ADediting_106502chr1_36312974_+intronic
ADediting_106503chr1_36312986_+intronic
ADediting_106504chr1_36313069_+intronic
ADediting_106505chr1_36313070_+intronic
ADediting_106506chr1_36313114_+intronic
ADediting_106507chr1_36314657_+intronic
ADediting_106508chr1_36315099_+intronic
ADediting_106509chr1_36315120_+intronic
ADediting_106510chr1_36315129_+intronic
ADediting_106511chr1_36315132_+intronic
ADediting_106512chr1_36315149_+intronic
ADediting_106513chr1_36315161_+intronic
ADediting_106514chr1_36315406_+intronic
ADediting_106515chr1_36315411_+intronic
ADediting_106516chr1_36315489_+intronic
ADediting_106517chr1_36315491_+intronic
ADediting_106518chr1_36315495_+intronic
ADediting_106519chr1_36315546_+intronic
ADediting_106520chr1_36315558_+intronic
ADediting_106521chr1_36315596_+intronic
ADediting_106522chr1_36316291_+intronic
ADediting_106523chr1_36317581_+intronic
ADediting_106524chr1_36317681_+intronic
ADediting_106525chr1_36317703_+intronic
ADediting_106526chr1_36317738_+intronic
ADediting_106527chr1_36317747_+intronic
ADediting_106528chr1_36317761_+intronic
ADediting_106529chr1_36317764_+intronic
ADediting_106530chr1_36317773_+intronic
ADediting_106531chr1_36317811_+intronic
ADediting_106532chr1_36317826_+intronic
ADediting_106533chr1_36317838_+intronic
ADediting_106534chr1_36318521_+intronic
ADediting_106535chr1_36318543_+intronic
ADediting_106536chr1_36318658_+intronic
ADediting_106537chr1_36318674_+intronic
ADediting_106538chr1_36318719_+intronic
ADediting_106539chr1_36318734_+intronic
ADediting_106540chr1_36318788_+intronic
ADediting_106541chr1_36318829_+intronic
ADediting_106542chr1_36318830_+intronic
ADediting_106543chr1_36318841_+intronic
ADediting_106544chr1_36324535_+UTR3
ADediting_106545chr1_36325079_+intronic
ADediting_106546chr1_36325105_+intronic
ADediting_106547chr1_36325116_+intronic
ADediting_106548chr1_36325117_+intronic
ADediting_106549chr1_36325182_+intronic
ADediting_106550chr1_36325588_+intronic
ADediting_106551chr1_36325595_+intronic
ADediting_106552chr1_36325662_+intronic
ADediting_106553chr1_36325751_+intronic
ADediting_106554chr1_36325806_+intronic
ADediting_106555chr1_36325818_+intronic
ADediting_106556chr1_36326288_+intronic
ADediting_106557chr1_36326312_+intronic
ADediting_106558chr1_36326349_+intronic
ADediting_106559chr1_36327697_+intronic
ADediting_106560chr1_36328507_+UTR3
ADediting_106561chr1_36328515_+UTR3
ADediting_106562chr1_36328516_+UTR3
ADediting_106563chr1_36328521_+UTR3
ADediting_106564chr1_36328524_+UTR3
ADediting_106565chr1_36328546_+UTR3
ADediting_106566chr1_36328556_+UTR3
ADediting_106567chr1_36328561_+UTR3
ADediting_106568chr1_36328564_+UTR3
ADediting_106569chr1_36328585_+UTR3
ADediting_106570chr1_36328595_+UTR3
ADediting_106571chr1_36328619_+UTR3
ADediting_106572chr1_36328621_+UTR3
ADediting_106573chr1_36328622_+UTR3
ADediting_106574chr1_36328625_+UTR3
ADediting_106575chr1_36328638_+UTR3
ADediting_106576chr1_36328641_+UTR3
ADediting_106577chr1_36328645_+UTR3
ADediting_106578chr1_36328649_+UTR3
ADediting_106579chr1_36328651_+UTR3
ADediting_106580chr1_36328665_+UTR3
ADediting_106581chr1_36328673_+UTR3
ADediting_106582chr1_36328674_+UTR3
ADediting_106583chr1_36328697_+UTR3
ADediting_106584chr1_36328705_+UTR3
ADediting_106585chr1_36328711_+UTR3
ADediting_106586chr1_36328732_+UTR3
ADediting_106587chr1_36328737_+UTR3
ADediting_106588chr1_36328742_+UTR3
ADediting_106589chr1_36328749_+UTR3
ADediting_106590chr1_36328754_+UTR3
ADediting_106591chr1_36328759_+UTR3
ADediting_1519764chr1_36309377_+intronic
ADediting_1519765chr1_36309380_+intronic
ADediting_1519766chr1_36309407_+intronic
ADediting_1519767chr1_36311811_+intronic
ADediting_1519768chr1_36316949_+intronic
ADediting_1519769chr1_36325089_+intronic
ADediting_1519770chr1_36326361_+intronic
ADediting_1519771chr1_36328570_+UTR3
ADediting_1519772chr1_36328572_+UTR3
ADediting_1600704chr1_36314637_+intronic
ADediting_1600705chr1_36328616_+UTR3

check button Repat-regional RNA editing(s).
ADeditome IDPositionRepeat familyRepeat sub familyRepeat name
ADediting_106466chr1_36310019_+SINEAluName=AluY
ADediting_106467chr1_36310161_+SINEAluName=AluY
ADediting_106468chr1_36310176_+SINEAluName=AluY
ADediting_106469chr1_36310206_+SINEAluName=AluY
ADediting_106470chr1_36310228_+SINEAluName=AluY
ADediting_106471chr1_36310231_+SINEAluName=AluY
ADediting_106472chr1_36310358_+SINEAluName=AluSx
ADediting_106473chr1_36310359_+SINEAluName=AluSx
ADediting_106474chr1_36310380_+SINEAluName=AluSx
ADediting_106475chr1_36310381_+SINEAluName=AluSx
ADediting_106476chr1_36310386_+SINEAluName=AluSx
ADediting_106477chr1_36310412_+SINEAluName=AluSx
ADediting_106478chr1_36310435_+SINEAluName=AluSx
ADediting_106479chr1_36310449_+SINEAluName=AluSx
ADediting_106480chr1_36310456_+SINEAluName=AluSx
ADediting_106481chr1_36310463_+SINEAluName=AluSx
ADediting_106482chr1_36310473_+SINEAluName=AluSx
ADediting_106483chr1_36310494_+SINEAluName=AluSx
ADediting_106484chr1_36310495_+SINEAluName=AluSx
ADediting_106485chr1_36310521_+SINEAluName=AluSx
ADediting_106486chr1_36310530_+SINEAluName=AluSx
ADediting_106487chr1_36310536_+SINEAluName=AluSx
ADediting_106488chr1_36310570_+SINEAluName=AluSx
ADediting_106489chr1_36310590_+SINEAluName=AluSx
ADediting_106490chr1_36310972_+SINEAluName=AluSx1
ADediting_106491chr1_36311002_+SINEAluName=AluSx1
ADediting_106492chr1_36311095_+SINEAluName=AluSx1
ADediting_106493chr1_36312230_+SINEAluName=AluY
ADediting_106494chr1_36312297_+SINEAluName=AluY
ADediting_106495chr1_36312754_+SINEAluName=AluSx3
ADediting_106496chr1_36312780_+SINEAluName=AluSx3
ADediting_106497chr1_36312815_+SINEAluName=AluSx3
ADediting_106498chr1_36312897_+SINEAluName=AluSx3
ADediting_106499chr1_36312903_+SINEAluName=AluSx3
ADediting_106500chr1_36312911_+SINEAluName=AluSx3
ADediting_106501chr1_36312914_+SINEAluName=AluSx3
ADediting_106502chr1_36312974_+SINEAluName=AluSx3
ADediting_106503chr1_36312986_+SINEAluName=AluSx3
ADediting_106504chr1_36313069_+SINEAluName=AluSc8
ADediting_106505chr1_36313070_+SINEAluName=AluSc8
ADediting_106506chr1_36313114_+SINEAluName=AluSc8
ADediting_106507chr1_36314657_+SINEAluName=AluSx3
ADediting_106508chr1_36315099_+SINEAluName=AluSz6
ADediting_106509chr1_36315120_+SINEAluName=AluSz6
ADediting_106510chr1_36315129_+SINEAluName=AluSz6
ADediting_106511chr1_36315132_+SINEAluName=AluSz6
ADediting_106512chr1_36315149_+SINEAluName=AluSz6
ADediting_106513chr1_36315161_+SINEAluName=AluSz6
ADediting_106514chr1_36315406_+SINEAluName=AluSx1
ADediting_106515chr1_36315411_+SINEAluName=AluSx1
ADediting_106516chr1_36315489_+SINEAluName=AluSx1
ADediting_106517chr1_36315491_+SINEAluName=AluSx1
ADediting_106518chr1_36315495_+SINEAluName=AluSx1
ADediting_106519chr1_36315546_+SINEAluName=AluSx1
ADediting_106520chr1_36315558_+SINEAluName=AluSx1
ADediting_106521chr1_36315596_+SINEAluName=AluSx1
ADediting_106522chr1_36316291_+SINEAluName=AluSx
ADediting_106523chr1_36317581_+SINEAluName=AluSq2
ADediting_106524chr1_36317681_+SINEAluName=AluSq2
ADediting_106525chr1_36317703_+SINEAluName=AluSq2
ADediting_106526chr1_36317738_+SINEAluName=AluSq2
ADediting_106527chr1_36317747_+SINEAluName=AluSq2
ADediting_106528chr1_36317761_+SINEAluName=AluSq2
ADediting_106529chr1_36317764_+SINEAluName=AluSq2
ADediting_106530chr1_36317773_+SINEAluName=AluSq2
ADediting_106531chr1_36317811_+SINEAluName=AluSq2
ADediting_106532chr1_36317826_+SINEAluName=AluSq2
ADediting_106533chr1_36317838_+SINEAluName=AluSq2
ADediting_106534chr1_36318521_+SINEAluName=AluSz
ADediting_106535chr1_36318543_+SINEAluName=AluSz
ADediting_106536chr1_36318658_+SINEAluName=AluY
ADediting_106537chr1_36318674_+SINEAluName=AluY
ADediting_106538chr1_36318719_+SINEAluName=AluY
ADediting_106539chr1_36318734_+SINEAluName=AluY
ADediting_106540chr1_36318788_+SINEAluName=AluY
ADediting_106541chr1_36318829_+SINEAluName=AluY
ADediting_106542chr1_36318830_+SINEAluName=AluY
ADediting_106543chr1_36318841_+SINEAluName=AluY
ADediting_106545chr1_36325079_+SINEAluName=AluJb
ADediting_106546chr1_36325105_+SINEAluName=AluJb
ADediting_106547chr1_36325116_+SINEAluName=AluJb
ADediting_106548chr1_36325117_+SINEAluName=AluJb
ADediting_106549chr1_36325182_+SINEAluName=AluJb
ADediting_106550chr1_36325588_+SINEAluName=AluY
ADediting_106551chr1_36325595_+SINEAluName=AluY
ADediting_106552chr1_36325662_+SINEAluName=AluY
ADediting_106553chr1_36325751_+SINEAluName=AluY
ADediting_106554chr1_36325806_+SINEAluName=AluY
ADediting_106555chr1_36325818_+SINEAluName=AluY
ADediting_106556chr1_36326288_+SINEAluName=AluSp
ADediting_106557chr1_36326312_+SINEAluName=AluSp
ADediting_106558chr1_36326349_+SINEAluName=AluSp
ADediting_106560chr1_36328507_+SINEAluName=AluJb
ADediting_106561chr1_36328515_+SINEAluName=AluJb
ADediting_106562chr1_36328516_+SINEAluName=AluJb
ADediting_106563chr1_36328521_+SINEAluName=AluJb
ADediting_106564chr1_36328524_+SINEAluName=AluJb
ADediting_106565chr1_36328546_+SINEAluName=AluJb
ADediting_106566chr1_36328556_+SINEAluName=AluJb
ADediting_106567chr1_36328561_+SINEAluName=AluJb
ADediting_106568chr1_36328564_+SINEAluName=AluJb
ADediting_106569chr1_36328585_+SINEAluName=AluJb
ADediting_106570chr1_36328595_+SINEAluName=AluJb
ADediting_106571chr1_36328619_+SINEAluName=AluJb
ADediting_106572chr1_36328621_+SINEAluName=AluJb
ADediting_106573chr1_36328622_+SINEAluName=AluJb
ADediting_106574chr1_36328625_+SINEAluName=AluJb
ADediting_106575chr1_36328638_+SINEAluName=AluJb
ADediting_106576chr1_36328641_+SINEAluName=AluJb
ADediting_106577chr1_36328645_+SINEAluName=AluJb
ADediting_106578chr1_36328649_+SINEAluName=AluJb
ADediting_106579chr1_36328651_+SINEAluName=AluJb
ADediting_106580chr1_36328665_+SINEAluName=AluJb
ADediting_106581chr1_36328673_+SINEAluName=AluJb
ADediting_106582chr1_36328674_+SINEAluName=AluJb
ADediting_106583chr1_36328697_+SINEAluName=AluJb
ADediting_106584chr1_36328705_+SINEAluName=AluJb
ADediting_106585chr1_36328711_+SINEAluName=AluJb
ADediting_106586chr1_36328732_+SINEAluName=AluJb
ADediting_106587chr1_36328737_+SINEAluName=AluJb
ADediting_106588chr1_36328742_+SINEAluName=AluJb
ADediting_106589chr1_36328749_+SINEAluName=AluJb
ADediting_106590chr1_36328754_+SINEAluName=AluJb
ADediting_106591chr1_36328759_+SINEAluName=AluJb
ADediting_1519764chr1_36309377_+SINEAluName=AluSz6
ADediting_1519765chr1_36309380_+SINEAluName=AluSz6
ADediting_1519766chr1_36309407_+SINEAluName=AluSz6
ADediting_1519767chr1_36311811_+SINEAluName=AluJo
ADediting_1519768chr1_36316949_+SINEAluName=FLAM_C
ADediting_1519769chr1_36325089_+SINEAluName=AluJb
ADediting_1519770chr1_36326361_+SINEAluName=AluSp
ADediting_1519771chr1_36328570_+SINEAluName=AluJb
ADediting_1519772chr1_36328572_+SINEAluName=AluJb
ADediting_1600704chr1_36314637_+SINEAluName=AluSx3
ADediting_1600705chr1_36328616_+SINEAluName=AluJb

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RNA A-to-I editing events in the alternative splicing sites for SH3D21

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeADeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SH3D21

check button Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

check button Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.
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check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
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check button - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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ADeditome IDChrPositoingSkipped exonENSGENSTs

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Protein coding region RNA A-to-I editings for SH3D21

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for SH3D21

check buttonRNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
all structure

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_106544chr1_36324535_+ENSG00000214193.11ENST00000505871.7SH3D21-206hsa-miR-515-5pchr136324532363245387mer-m83632451636324539140-17.18
ADediting_106544chr1_36324535_+ENSG00000214193.11ENST00000505871.7SH3D21-206hsa-miR-519e-5pchr136324532363245387mer-m83632451836324539140-14.79
ADediting_106544chr1_36324535_+ENSG00000214193.11ENST00000505871.7SH3D21-206hsa-miR-5695chr136324531363245388mer-1a3632451736324538140-14.36

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_106558chr1_36326349_+ENSG00000214193.11ENST00000672313.1SH3D21-208hsa-miR-6089chr136326348363263547mer-m83632633236326355164-37.82
ADediting_106561chr1_36328515_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-638chr136328515363285217mer-1a3632849736328521155-33.48
ADediting_106562chr1_36328516_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-8052chr136328515363285217mer-1a3632850036328521142-25.78
ADediting_106563chr1_36328521_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-371a-3pchr136328520363285267mer-m83632850536328527146-17.31
ADediting_106564chr1_36328524_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-518a-3pchr136328522363285287mer-m83632850836328529145-14.46
ADediting_106564chr1_36328524_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-518bchr136328522363285287mer-m83632850736328529150-20.07
ADediting_106564chr1_36328524_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-518c-3pchr136328522363285287mer-m83632850536328529151-22.17
ADediting_106564chr1_36328524_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-518d-3pchr136328522363285287mer-m83632850836328529146-18.31
ADediting_106564chr1_36328524_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-518e-3pchr136328521363285277mer-m83632850736328528149-17.05
ADediting_106564chr1_36328524_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-518f-3pchr136328522363285287mer-m83632850836328529150-14.77
ADediting_106564chr1_36328524_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-526a-3pchr136328522363285287mer-m83632850736328529150-15.99
ADediting_106566chr1_36328556_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-4535chr136328555363285617mer-m83632854636328562146-15.42
ADediting_106566chr1_36328556_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-6861-3pchr136328554363285618mer-1a3632854436328561140-14.8
ADediting_106568chr1_36328564_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-331-3pchr136328559363285657mer-m83632854636328566148-20.81
ADediting_106568chr1_36328564_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-4308chr136328558363285647mer-m83632854836328565148-17.98
ADediting_106568chr1_36328564_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-6771-3pchr136328562363285687mer-m83632854936328569150-23.74
ADediting_106571chr1_36328619_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-20b-3pchr136328613363286208mer-1a3632859936328620142-13.57
ADediting_106572chr1_36328621_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-6844chr136328616363286227mer-m83632860136328623147-7.4
ADediting_106575chr1_36328638_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-1227-3pchr136328636363286438mer-1a3632862436328643155-20.54
ADediting_106575chr1_36328638_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-4715-3pchr136328635363286417mer-m83632862236328642150-21.06
ADediting_106578chr1_36328649_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-3934-5pchr136328643363286497mer-m83632862836328650155-21.68
ADediting_106578chr1_36328649_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-552-3pchr136328644363286518mer-1a3632863136328651146-13.62
ADediting_106585chr1_36328711_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-140-3pchr136328709363287157mer-m83632869636328716148-15.53
ADediting_106587chr1_36328737_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-128-3pchr136328731363287377mer-m83632871836328738154-18.21
ADediting_106587chr1_36328737_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-216a-3pchr136328731363287377mer-m83632871736328738146-18.65
ADediting_106587chr1_36328737_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-3681-3pchr136328731363287377mer-m83632871736328738147-14.03
ADediting_106588chr1_36328742_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-4743-5pchr136328739363287457mer-m83632872736328746152-28.17
ADediting_106589chr1_36328749_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-500b-3pchr136328745363287528mer-1a3632873436328752155-22.37
ADediting_106589chr1_36328749_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-6879-3pchr136328747363287548mer-1a3632873236328754142-19.96
ADediting_106591chr1_36328759_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-4469chr136328755363287628mer-1a3632874436328762148-25.98
ADediting_106591chr1_36328759_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-642a-5pchr136328754363287607mer-m83632874036328761140-14.04
ADediting_106591chr1_36328759_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-6867-3pchr136328756363287627mer-m83632874236328763164-19.93
ADediting_1519770chr1_36326361_+ENSG00000214193.11ENST00000672313.1SH3D21-208hsa-miR-4691-3pchr136326359363263657mer-m83632633936326366150-26.36
ADediting_1519772chr1_36328572_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-3176chr136328570363285767mer-m83632855936328577156-24.97
ADediting_1519772chr1_36328572_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-3922-3pchr136328570363285767mer-m83632855236328577153-20.02
ADediting_1519772chr1_36328572_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-6878-3pchr136328569363285757mer-m83632855636328576148-24.79
ADediting_1600705chr1_36328616_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-4328chr136328610363286167mer-m83632860136328617147-10.09
ADediting_1600705chr1_36328616_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-6516-5pchr136328613363286208mer-1a3632859936328620140-13.22

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_106558chr1_36326349_+ENSG00000214193.11ENST00000672313.1SH3D21-208hsa-miR-4478chr136326347363263537mer-m83632633936326354149-25.05
ADediting_106558chr1_36326349_+ENSG00000214193.11ENST00000672313.1SH3D21-208hsa-miR-4649-3pchr136326344363263507mer-m83632633136326351140-14.3
ADediting_106558chr1_36326349_+ENSG00000214193.11ENST00000672313.1SH3D21-208hsa-miR-7160-5pchr136326345363263517mer-m83632633236326352146-17.63
ADediting_106560chr1_36328507_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-6807-5pchr136328501363285077mer-m83632848736328508153-19.96
ADediting_106560chr1_36328507_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-6863chr136328506363285127mer-m83632848936328513143-19.13
ADediting_106561chr1_36328515_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-10399-5pchr136328511363285177mer-m83632849736328518152-13.6
ADediting_106561chr1_36328515_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-6504-3pchr136328511363285177mer-m83632849736328518151-15.44
ADediting_106562chr1_36328516_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-10399-5pchr136328511363285177mer-m83632849736328518152-13.6
ADediting_106562chr1_36328516_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-6504-3pchr136328511363285177mer-m83632849736328518151-15.44
ADediting_106563chr1_36328521_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-6506-5pchr136328516363285227mer-m83632850136328523144-15.92
ADediting_106564chr1_36328524_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-302a-3pchr136328521363285277mer-m83632850636328528141-12.21
ADediting_106564chr1_36328524_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-302b-3pchr136328521363285277mer-m83632850636328528141-10.01
ADediting_106564chr1_36328524_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-302c-3pchr136328521363285277mer-m83632850836328528145-11.96
ADediting_106564chr1_36328524_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-302d-3pchr136328521363285277mer-m83632850536328528144-12.95
ADediting_106564chr1_36328524_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-302echr136328521363285277mer-m83632851236328528141-8.62
ADediting_106564chr1_36328524_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-372-3pchr136328521363285277mer-m83632850136328528155-20.46
ADediting_106564chr1_36328524_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-519d-3pchr136328522363285287mer-m83632850936328529146-14.41
ADediting_106564chr1_36328524_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-520a-3pchr136328521363285277mer-m83632850636328528146-13
ADediting_106564chr1_36328524_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-520b-3pchr136328521363285277mer-m83632850736328528145-14.8
ADediting_106564chr1_36328524_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-520c-3pchr136328521363285277mer-m83632850636328528147-14.8
ADediting_106564chr1_36328524_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-520d-3pchr136328521363285277mer-m83632850736328528140-12.35
ADediting_106564chr1_36328524_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-520e-3pchr136328521363285277mer-m83632850836328528140-12.25
ADediting_106564chr1_36328524_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-520hchr136328523363285297mer-m83632850836328530155-15.71
ADediting_106564chr1_36328524_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-526b-3pchr136328522363285287mer-m83632850736328529150-14.82
ADediting_106566chr1_36328556_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-5009-5pchr136328555363285617mer-m83632854036328562149-18.93
ADediting_106567chr1_36328561_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-3690chr136328557363285648mer-1a3632854136328564145-17.28
ADediting_106567chr1_36328561_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-378a-3pchr136328556363285627mer-m83632854336328563150-15.66
ADediting_106567chr1_36328561_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-378bchr136328556363285627mer-m83632854536328563145-14.81
ADediting_106567chr1_36328561_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-378cchr136328556363285627mer-m83632853736328563151-16.47
ADediting_106567chr1_36328561_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-378dchr136328556363285627mer-m83632854536328563150-15.56
ADediting_106567chr1_36328561_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-378echr136328556363285627mer-m83632854636328563150-15.87
ADediting_106567chr1_36328561_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-378fchr136328556363285627mer-m83632854436328563145-14.89
ADediting_106567chr1_36328561_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-378hchr136328556363285627mer-m83632854136328563155-18.91
ADediting_106567chr1_36328561_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-378ichr136328556363285627mer-m83632854136328563146-15.56
ADediting_106567chr1_36328561_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-5009-5pchr136328555363285617mer-m83632854036328562149-18.93
ADediting_106569chr1_36328585_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-4716-5pchr136328584363285907mer-m83632857036328591148-13.48
ADediting_106569chr1_36328585_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-744-3pchr136328581363285877mer-m83632856436328588149-15.79
ADediting_106570chr1_36328595_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-193b-5pchr136328593363286008mer-1a3632857936328600146-16.61
ADediting_106570chr1_36328595_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-3170chr136328594363286007mer-m83632858036328601143-14.84
ADediting_106570chr1_36328595_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-6855-5pchr136328594363286007mer-m83632857736328601147-18.46
ADediting_106572chr1_36328621_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-4735-5pchr136328620363286267mer-m83632860636328627140-4.96
ADediting_106573chr1_36328622_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-4735-5pchr136328620363286267mer-m83632860636328627140-4.96
ADediting_106574chr1_36328625_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-4735-5pchr136328620363286267mer-m83632860636328627140-4.96
ADediting_106576chr1_36328641_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-6867-5pchr136328640363286467mer-m83632862536328647141-13.46
ADediting_106577chr1_36328645_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-3650chr136328641363286477mer-m83632862936328648152-22.15
ADediting_106577chr1_36328645_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-6867-5pchr136328640363286467mer-m83632862536328647141-13.46
ADediting_106578chr1_36328649_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-625-3pchr136328647363286537mer-m83632863336328654140-7.95
ADediting_106579chr1_36328651_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-625-3pchr136328647363286537mer-m83632863336328654140-7.95
ADediting_106580chr1_36328665_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-1200chr136328662363286687mer-m83632864936328669141-18.25
ADediting_106580chr1_36328665_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-6869-5pchr136328659363286657mer-m83632864536328666147-16.66
ADediting_106583chr1_36328697_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-10400-3pchr136328691363286977mer-m83632867936328698141-23.04
ADediting_106583chr1_36328697_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-1343-3pchr136328694363287007mer-m83632867836328701146-26.23
ADediting_106583chr1_36328697_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-4674chr136328691363286977mer-m83632867936328698148-24.84
ADediting_106583chr1_36328697_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-6783-3pchr136328694363287007mer-m83632867536328701152-27.15
ADediting_106583chr1_36328697_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-939-3pchr136328693363287008mer-1a3632867836328700146-23.71
ADediting_106585chr1_36328711_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-103bchr136328707363287137mer-m83632869436328714150-17.62
ADediting_106586chr1_36328732_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-5693chr136328729363287357mer-m83632871536328736145-19.86
ADediting_106586chr1_36328732_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-891a-3pchr136328727363287337mer-m83632871236328734144-15.57
ADediting_106588chr1_36328742_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-3135bchr136328738363287447mer-m83632872836328745155-29.39
ADediting_106588chr1_36328742_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-3652chr136328739363287457mer-m83632872936328746145-19.5
ADediting_106590chr1_36328754_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-215-3pchr136328749363287568mer-1a3632873136328756143-18.83
ADediting_106590chr1_36328754_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-6780a-3pchr136328753363287608mer-1a3632874036328760155-16.9
ADediting_106591chr1_36328759_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-3059-5pchr136328754363287607mer-m83632873536328761149-19.16
ADediting_106591chr1_36328759_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-6780a-3pchr136328753363287608mer-1a3632874036328760155-16.9
ADediting_1519770chr1_36326361_+ENSG00000214193.11ENST00000672313.1SH3D21-208hsa-miR-5690chr136326359363263657mer-m83632634636326366145-16.75
ADediting_1519771chr1_36328570_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-371a-5pchr136328565363285728mer-1a3632855336328572151-18.33
ADediting_1519771chr1_36328570_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-6843-3pchr136328569363285757mer-m83632855736328576152-20.01
ADediting_1519771chr1_36328570_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-6848-3pchr136328569363285757mer-m83632855936328576142-15.32
ADediting_1519772chr1_36328572_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-3663-5pchr136328570363285767mer-m83632855836328577144-21.2
ADediting_1519772chr1_36328572_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-6131chr136328571363285777mer-m83632856036328578140-16.72
ADediting_1519772chr1_36328572_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-6843-3pchr136328569363285757mer-m83632855736328576152-20.01
ADediting_1519772chr1_36328572_+ENSG00000214193.11ENST00000373137.2SH3D21-201hsa-miR-6848-3pchr136328569363285757mer-m83632855936328576142-15.32

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1337757chr7_5495852_-ENSG00000214193.11ENST00000505871.7SH3D21-206hsa-miR-589-3pchr136321816363218227mer-m83632179636321823158-25.32
ADediting_1337757chr7_5495852_-ENSG00000214193.11ENST00000505871.7SH3D21-206hsa-miR-589-3pchr136323039363230457mer-m83632302436323046153-22.05
ADediting_1471004chr9_63819627_+ENSG00000214193.11ENST00000505871.7SH3D21-206hsa-miR-4477bchr136323183363231897mer-m83632316936323190140-11.01
ADediting_496066chr15_66496985_-ENSG00000214193.11ENST00000505871.7SH3D21-206hsa-miR-4512chr136322340363223467mer-1a3632232536322346140-24.08
ADediting_496066chr15_66496985_-ENSG00000214193.11ENST00000505871.7SH3D21-206hsa-miR-4512chr136322939363229457mer-m83632292536322946147-20.93
ADediting_496066chr15_66496985_-ENSG00000214193.11ENST00000505871.7SH3D21-206hsa-miR-4512chr136323281363232877mer-m83632326736323288153-34.09
ADediting_496066chr15_66496985_-ENSG00000214193.11ENST00000505871.7SH3D21-206hsa-miR-4512chr136324056363240627mer-m83632404336324063147-19.64

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1337757chr7_5495852_-ENSG00000214193.11ENST00000505871.7SH3D21-206hsa-miR-589-3pchr136324756363247627mer-m83632473836324763149-15.56

check button Differentially expressed gene-miRNA network
Differentially expressed lncRNA-miRNA network
boxplot

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The effects of the RNA editing to the stability of the RNA structures for SH3D21

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000505871.7protein_codingSoverviewSoverview
ENST00000373137.2lncRNASoverviewSoverview
ENST00000672313.1lncRNASoverviewSoverview

check button RNA A-to-I editing in miRNA.
ADeditom_IDENSTmir_IDEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in mRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
ADediting_106544ENST00000505871.7chr1_36324535_+5510-2751.90-2747.20-2751.90

check button RNA A-to-I editing in lncRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
ADediting_106560ENST00000373137.2chr1_36328507_+1124-662.70-663.10-709.30
ADediting_106561ENST00000373137.2chr1_36328515_+1132-668.10-663.10-709.30
ADediting_106562ENST00000373137.2chr1_36328516_+1133-663.10-663.10-709.30
ADediting_106563ENST00000373137.2chr1_36328521_+1138-664.90-663.10-709.30
ADediting_106564ENST00000373137.2chr1_36328524_+1141-663.10-663.10-709.30
ADediting_106565ENST00000373137.2chr1_36328546_+1163-665.20-663.10-709.30
ADediting_106566ENST00000373137.2chr1_36328556_+1173-666.30-663.10-709.30
ADediting_106567ENST00000373137.2chr1_36328561_+1178-668.00-663.10-709.30
ADediting_106568ENST00000373137.2chr1_36328564_+1181-665.90-663.10-709.30
ADediting_1519771ENST00000373137.2chr1_36328570_+1187-665.30-663.10-709.30
ADediting_1519772ENST00000373137.2chr1_36328572_+1189-664.70-663.10-709.30
ADediting_106569ENST00000373137.2chr1_36328585_+1202-663.30-663.10-709.30
ADediting_106570ENST00000373137.2chr1_36328595_+1212-663.90-663.10-709.30
ADediting_1600705ENST00000373137.2chr1_36328616_+1233-664.70-663.10-709.30
ADediting_106571ENST00000373137.2chr1_36328619_+1236-665.30-663.10-709.30
ADediting_106572ENST00000373137.2chr1_36328621_+1238-663.20-663.10-709.30
ADediting_106573ENST00000373137.2chr1_36328622_+1239-664.40-663.10-709.30
ADediting_106574ENST00000373137.2chr1_36328625_+1242-664.30-663.10-709.30
ADediting_106575ENST00000373137.2chr1_36328638_+1255-667.40-663.10-709.30
ADediting_106576ENST00000373137.2chr1_36328641_+1258-663.40-663.10-709.30
ADediting_106577ENST00000373137.2chr1_36328645_+1262-663.90-663.10-709.30
ADediting_106578ENST00000373137.2chr1_36328649_+1266-665.30-663.10-709.30
ADediting_106579ENST00000373137.2chr1_36328651_+1268-665.70-663.10-709.30
ADediting_106580ENST00000373137.2chr1_36328665_+1282-663.70-663.10-709.30
ADediting_106581ENST00000373137.2chr1_36328673_+1290-665.00-663.10-709.30
ADediting_106582ENST00000373137.2chr1_36328674_+1291-662.70-663.10-709.30
ADediting_106583ENST00000373137.2chr1_36328697_+1314-662.30-663.10-709.30
ADediting_106584ENST00000373137.2chr1_36328705_+1322-663.60-663.10-709.30
ADediting_106585ENST00000373137.2chr1_36328711_+1328-664.30-663.10-709.30
ADediting_106586ENST00000373137.2chr1_36328732_+1349-662.90-663.10-709.30
ADediting_106587ENST00000373137.2chr1_36328737_+1354-665.00-663.10-709.30
ADediting_106588ENST00000373137.2chr1_36328742_+1359-664.50-663.10-709.30
ADediting_106589ENST00000373137.2chr1_36328749_+1366-664.10-663.10-709.30
ADediting_106590ENST00000373137.2chr1_36328754_+1371-662.40-663.10-709.30
ADediting_106591ENST00000373137.2chr1_36328759_+1376-664.50-663.10-709.30
ADediting_106557ENST00000672313.1chr1_36326312_+16-329.30-327.20-332.00
ADediting_106558ENST00000672313.1chr1_36326349_+53-329.30-327.20-332.00
ADediting_1519770ENST00000672313.1chr1_36326361_+65-330.60-327.20-332.00

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Relation with ADAR for SH3D21

check button Correlation between ADAR gene expression and RNA editing frequency
TissueADeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
TCXADediting_106544chr1_36324535_+0.4802039206689960.05807976637452520.387326868903571-0.0710894474451948.43218071659627e-070.38940120128753
CERADediting_106546chr1_36325105_+0.1323014412840940.1234520754390677.07463340126011e-050.3186241022736830.009051499248931860.212452674366273
CERADediting_106548chr1_36325117_+0.009387762853672040.211458197995592.80558355719089e-060.3718005466867260.0007035059440773680.273635793401146
CERADediting_106557chr1_36326312_+0.02266947149166680.1860053607098954.42756828020958e-050.3269759346306110.007658781151312820.216954680475179
CERADediting_106558chr1_36326349_+0.01868041435047040.1918452221087165.02420851882418e-070.3966780556926710.09011145856531490.138871043212057
DLPFCADediting_106559chr1_36327697_+5.81564764754454e-050.2262759799734983.55791053639699e-080.3066951241876920.7568236510869790.0176571573518916
PCCADediting_106559chr1_36327697_+1.22789126321195e-050.3105681077135666.19109985494547e-050.28563475731390.3464556267673180.0684931372393252
CERADediting_106566chr1_36328556_+0.09364752439112060.1373820724426830.0001435937551870610.3055232548510980.02837229511294740.179033207567764
CERADediting_106568chr1_36328564_+0.148096247799470.1186639973266288.29393942281365e-050.3157338698722380.465063568010420.0600966826423352
CERADediting_106575chr1_36328638_+0.07723603212233870.1447212982393991.43696598187704e-050.3460931711249322.5366342696665e-050.33659611718543
CERADediting_106580chr1_36328665_+0.03875054799773060.1689538558190954.13169936032662e-050.3281880410501990.0003433277792147170.288495145326445
CERADediting_106582chr1_36328674_+0.04924536473163150.1608593525286650.00016310531219990.3030989194488660.00103975475559290.265181304613915
CERADediting_106583chr1_36328697_+0.008489738953876560.214189339330939.0497753946925e-060.3535991078669260.007484723767949180.217567454024279
CERADediting_106585chr1_36328711_+0.01350969881917590.2012932510809724.58611912827e-060.3642979679851490.01848828999317150.192152857160414
CERADediting_106587chr1_36328737_+0.008238575721568470.2149989188603610.00012140323689170.3086857060027310.4210524329378020.0661765896529285
CERADediting_106591chr1_36328759_+0.1897455989185790.1076589578663218.62936608837223e-050.315008627216660.02616373728015190.181577159451566

check button Correlation between ADAR gene expression and this gene's expression
TissueADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
DLPFC6.95953873698686e-140.4082956333660453.60476755526211e-100.3464369996430983.49329816255304e-280.570685530784715
AC2.88319988351674e-220.5625622614207733.13458800308252e-240.5837462422128134.92026231880146e-110.400232523986882
PCC6.95015780308701e-250.6560761734250213.36733007649343e-260.6695345479772334.51764348910548e-070.355437525346685
CER1.1201154013465e-120.5389585303235461.03931828138808e-140.5773772723920220.01010595820420780.209435355190821
TCX9.55736547877793e-080.4188981528465695.38013749229796e-130.545312761683640.864501014266103-0.0140501514223535
FP8.92868938184579e-120.4826680343170130.02856933879587740.1641426148018712.55831323155169e-070.374733936549703
IFG3.65005357177022e-050.7284314898542228.46434049682245e-060.7649126973179510.0311399023569880.431777218524947
PG0.002613969634918710.2194735752345533.76884199970606e-060.331621247320160.08015649263784850.128633607246378
STG2.80268856664303e-090.592946696556011.98015450610265e-050.4474293472841160.4004028933081920.0929437454473175

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Relation with AD stages for SH3D21

check button Correlation between AD stages and RNA editing frequency
TissueADeditomIDpositionP-valCoeff.
CERADediting_106548chr1_36325117_+0.0002305982688277030.347329265581415
CERADediting_106549chr1_36325182_+0.0005747988575223560.326018350124943
CERADediting_106575chr1_36328638_+0.0009643015764607950.31322655156247
CERADediting_106582chr1_36328674_+0.0004558490649681640.331574788024678
CERADediting_106583chr1_36328697_+0.001082076633671560.3102993725986

check button Correlation between AD stages and this gene's expression
TissueP-valCoeff.
CER0.0001914844962818890.351486104168332

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RelatedDrugs for SH3D21

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for SH3D21

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource