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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for BMS1P4 |
 Gene summary |
| Gene information | Gene symbol | BMS1P4 | Gene ID | 729096 |
| Gene name | BMS1 pseudogene 4 | |
| Synonyms | BMS1LP4 | |
| Cytomap | 10q22.2 | |
| Type of gene | pseudo | |
| Description | BMS1 homolog, ribosome assembly protein pseudogeneBMS1, ribosome biogenesis factor pseudogene 4BMS1L pseudogene 4 | |
| Modification date | 20200313 | |
| UniProtAcc | ||
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for BMS1P4 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_214091(73699331, -), ADediting_214092(73699334, -), ADediting_214093(73699340, -), ADediting_214094(73699343, -), ADediting_214095(73699346, -), ADediting_214096(73699347, -), ADediting_214097(73699374, -), ADediting_214098(73699388, -), ADediting_214099(73699399, -), ADediting_214100(73699403, -), ADediting_214101(73699406, -), ADediting_214102(73699419, -), ADediting_214103(73699434, -), ADediting_214104(73699442, -), ADediting_214105(73699443, -), ADediting_214106(73699447, -), ADediting_214107(73699451, -), ADediting_214108(73699469, -), ADediting_214109(73699479, -), ADediting_214110(73699504, -), ADediting_214111(73699544, -), ADediting_214112(73700091, -), ADediting_214113(73700132, -), ADediting_214114(73700150, -), ADediting_214115(73700389, -), ADediting_214116(73700560, -), ADediting_214117(73702222, -), ADediting_214118(73702275, -), ADediting_214119(73702287, -), ADediting_214120(73702288, -), ADediting_214121(73702337, -), ADediting_214122(73702364, -), ADediting_214123(73702369, -), ADediting_214124(73704587, -), ADediting_214125(73704597, -), ADediting_214126(73704615, -), ADediting_214127(73704639, -), ADediting_214128(73704645, -), ADediting_214129(73704649, -), ADediting_214130(73704666, -), ADediting_214131(73704669, -), ADediting_214132(73704714, -), ADediting_214133(73704716, -), ADediting_214134(73704775, -), ADediting_214135(73704776, -), ADediting_214136(73704792, -), ADediting_214137(73704794, -), ADediting_214138(73704824, -), ADediting_214139(73708867, -), ADediting_214140(73708907, -), ADediting_214141(73708933, -), ADediting_214142(73709014, -), ADediting_214143(73712344, -), ADediting_214144(73712347, -), ADediting_214145(73712926, -), ADediting_1524725(73699318, -), ADediting_1524726(73699508, -), ADediting_1524727(73704659, -), ADediting_1524728(73704726, -), ADediting_1524729(73712335, -), ADediting_1524730(73712364, -), ADediting_1524731(73712744, -), ADediting_1524732(73712754, -), ADediting_1524733(73712792, -), ADediting_1524734(73712848, -), ADediting_1524735(73712849, -), ADediting_1524736(73712852, -), ADediting_1524737(73712872, -), ADediting_1524738(73712880, -), ADediting_1606989(73699348, -), ADediting_1606990(73704690, -), |
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RNA editing positional annotations for BMS1P4 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_214091 | chr10_73699331_- | ncRNA_exonic |
| ADediting_214092 | chr10_73699334_- | ncRNA_exonic |
| ADediting_214093 | chr10_73699340_- | ncRNA_exonic |
| ADediting_214094 | chr10_73699343_- | ncRNA_exonic |
| ADediting_214095 | chr10_73699346_- | ncRNA_exonic |
| ADediting_214096 | chr10_73699347_- | ncRNA_exonic |
| ADediting_214097 | chr10_73699374_- | ncRNA_exonic |
| ADediting_214098 | chr10_73699388_- | ncRNA_exonic |
| ADediting_214099 | chr10_73699399_- | ncRNA_exonic |
| ADediting_214100 | chr10_73699403_- | ncRNA_exonic |
| ADediting_214101 | chr10_73699406_- | ncRNA_exonic |
| ADediting_214102 | chr10_73699419_- | ncRNA_exonic |
| ADediting_214103 | chr10_73699434_- | ncRNA_exonic |
| ADediting_214104 | chr10_73699442_- | ncRNA_exonic |
| ADediting_214105 | chr10_73699443_- | ncRNA_exonic |
| ADediting_214106 | chr10_73699447_- | ncRNA_exonic |
| ADediting_214107 | chr10_73699451_- | ncRNA_exonic |
| ADediting_214108 | chr10_73699469_- | ncRNA_exonic |
| ADediting_214109 | chr10_73699479_- | ncRNA_exonic |
| ADediting_214110 | chr10_73699504_- | ncRNA_exonic |
| ADediting_214111 | chr10_73699544_- | ncRNA_exonic |
| ADediting_214112 | chr10_73700091_- | ncRNA_intronic |
| ADediting_214113 | chr10_73700132_- | ncRNA_intronic |
| ADediting_214114 | chr10_73700150_- | ncRNA_intronic |
| ADediting_214115 | chr10_73700389_- | ncRNA_intronic |
| ADediting_214116 | chr10_73700560_- | ncRNA_intronic |
| ADediting_214117 | chr10_73702222_- | ncRNA_intronic |
| ADediting_214118 | chr10_73702275_- | ncRNA_intronic |
| ADediting_214119 | chr10_73702287_- | ncRNA_intronic |
| ADediting_214120 | chr10_73702288_- | ncRNA_intronic |
| ADediting_214121 | chr10_73702337_- | ncRNA_intronic |
| ADediting_214122 | chr10_73702364_- | ncRNA_intronic |
| ADediting_214123 | chr10_73702369_- | ncRNA_intronic |
| ADediting_214124 | chr10_73704587_- | ncRNA_intronic |
| ADediting_214125 | chr10_73704597_- | ncRNA_intronic |
| ADediting_214126 | chr10_73704615_- | ncRNA_intronic |
| ADediting_214127 | chr10_73704639_- | ncRNA_intronic |
| ADediting_214128 | chr10_73704645_- | ncRNA_intronic |
| ADediting_214129 | chr10_73704649_- | ncRNA_intronic |
| ADediting_214130 | chr10_73704666_- | ncRNA_intronic |
| ADediting_214131 | chr10_73704669_- | ncRNA_intronic |
| ADediting_214132 | chr10_73704714_- | ncRNA_intronic |
| ADediting_214133 | chr10_73704716_- | ncRNA_intronic |
| ADediting_214134 | chr10_73704775_- | ncRNA_intronic |
| ADediting_214135 | chr10_73704776_- | ncRNA_intronic |
| ADediting_214136 | chr10_73704792_- | ncRNA_intronic |
| ADediting_214137 | chr10_73704794_- | ncRNA_intronic |
| ADediting_214138 | chr10_73704824_- | ncRNA_intronic |
| ADediting_214139 | chr10_73708867_- | ncRNA_intronic |
| ADediting_214140 | chr10_73708907_- | ncRNA_intronic |
| ADediting_214141 | chr10_73708933_- | ncRNA_intronic |
| ADediting_214142 | chr10_73709014_- | ncRNA_intronic |
| ADediting_214143 | chr10_73712344_- | ncRNA_intronic |
| ADediting_214144 | chr10_73712347_- | ncRNA_intronic |
| ADediting_214145 | chr10_73712926_- | ncRNA_intronic |
| ADediting_1524725 | chr10_73699318_- | ncRNA_exonic |
| ADediting_1524726 | chr10_73699508_- | ncRNA_exonic |
| ADediting_1524727 | chr10_73704659_- | ncRNA_intronic |
| ADediting_1524728 | chr10_73704726_- | ncRNA_intronic |
| ADediting_1524729 | chr10_73712335_- | ncRNA_intronic |
| ADediting_1524730 | chr10_73712364_- | ncRNA_intronic |
| ADediting_1524731 | chr10_73712744_- | ncRNA_intronic |
| ADediting_1524732 | chr10_73712754_- | ncRNA_intronic |
| ADediting_1524733 | chr10_73712792_- | ncRNA_intronic |
| ADediting_1524734 | chr10_73712848_- | ncRNA_intronic |
| ADediting_1524735 | chr10_73712849_- | ncRNA_intronic |
| ADediting_1524736 | chr10_73712852_- | ncRNA_intronic |
| ADediting_1524737 | chr10_73712872_- | ncRNA_intronic |
| ADediting_1524738 | chr10_73712880_- | ncRNA_intronic |
| ADediting_1606989 | chr10_73699348_- | ncRNA_exonic |
| ADediting_1606990 | chr10_73704690_- | ncRNA_intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_214091 | chr10_73699331_- | SINE | Alu | Name=AluSx |
| ADediting_214092 | chr10_73699334_- | SINE | Alu | Name=AluSx |
| ADediting_214093 | chr10_73699340_- | SINE | Alu | Name=AluSx |
| ADediting_214094 | chr10_73699343_- | SINE | Alu | Name=AluSx |
| ADediting_214095 | chr10_73699346_- | SINE | Alu | Name=AluSx |
| ADediting_214096 | chr10_73699347_- | SINE | Alu | Name=AluSx |
| ADediting_214097 | chr10_73699374_- | SINE | Alu | Name=AluSx |
| ADediting_214098 | chr10_73699388_- | SINE | Alu | Name=AluSx |
| ADediting_214099 | chr10_73699399_- | SINE | Alu | Name=AluSx |
| ADediting_214100 | chr10_73699403_- | SINE | Alu | Name=AluSx |
| ADediting_214101 | chr10_73699406_- | SINE | Alu | Name=AluSx |
| ADediting_214102 | chr10_73699419_- | SINE | Alu | Name=AluSx |
| ADediting_214103 | chr10_73699434_- | SINE | Alu | Name=AluSx |
| ADediting_214104 | chr10_73699442_- | SINE | Alu | Name=AluSx |
| ADediting_214105 | chr10_73699443_- | SINE | Alu | Name=AluSx |
| ADediting_214106 | chr10_73699447_- | SINE | Alu | Name=AluSx |
| ADediting_214107 | chr10_73699451_- | SINE | Alu | Name=AluSx |
| ADediting_214108 | chr10_73699469_- | SINE | Alu | Name=AluSx |
| ADediting_214109 | chr10_73699479_- | SINE | Alu | Name=AluSx |
| ADediting_214110 | chr10_73699504_- | SINE | Alu | Name=AluSx |
| ADediting_214111 | chr10_73699544_- | SINE | Alu | Name=AluSx |
| ADediting_214112 | chr10_73700091_- | SINE | Alu | Name=AluSp |
| ADediting_214113 | chr10_73700132_- | SINE | Alu | Name=AluSp |
| ADediting_214114 | chr10_73700150_- | SINE | Alu | Name=AluSp |
| ADediting_214115 | chr10_73700389_- | SINE | Alu | Name=AluSx1 |
| ADediting_214116 | chr10_73700560_- | SINE | Alu | Name=AluSx1 |
| ADediting_214117 | chr10_73702222_- | SINE | Alu | Name=AluY |
| ADediting_214118 | chr10_73702275_- | SINE | Alu | Name=AluY |
| ADediting_214119 | chr10_73702287_- | SINE | Alu | Name=AluY |
| ADediting_214120 | chr10_73702288_- | SINE | Alu | Name=AluY |
| ADediting_214121 | chr10_73702337_- | SINE | Alu | Name=AluY |
| ADediting_214122 | chr10_73702364_- | SINE | Alu | Name=AluY |
| ADediting_214123 | chr10_73702369_- | SINE | Alu | Name=AluY |
| ADediting_214124 | chr10_73704587_- | SINE | Alu | Name=AluSx1 |
| ADediting_214125 | chr10_73704597_- | SINE | Alu | Name=AluSx1 |
| ADediting_214126 | chr10_73704615_- | SINE | Alu | Name=AluSx1 |
| ADediting_214127 | chr10_73704639_- | SINE | Alu | Name=AluSx1 |
| ADediting_214128 | chr10_73704645_- | SINE | Alu | Name=AluSx1 |
| ADediting_214129 | chr10_73704649_- | SINE | Alu | Name=AluSx1 |
| ADediting_214130 | chr10_73704666_- | SINE | Alu | Name=AluSx1 |
| ADediting_214131 | chr10_73704669_- | SINE | Alu | Name=AluSx1 |
| ADediting_214132 | chr10_73704714_- | SINE | Alu | Name=AluSx1 |
| ADediting_214133 | chr10_73704716_- | SINE | Alu | Name=AluSx1 |
| ADediting_214134 | chr10_73704775_- | SINE | Alu | Name=AluSx1 |
| ADediting_214135 | chr10_73704776_- | SINE | Alu | Name=AluSx1 |
| ADediting_214136 | chr10_73704792_- | SINE | Alu | Name=AluSx1 |
| ADediting_214137 | chr10_73704794_- | SINE | Alu | Name=AluSx1 |
| ADediting_214138 | chr10_73704824_- | SINE | Alu | Name=AluSx1 |
| ADediting_214139 | chr10_73708867_- | SINE | Alu | Name=AluSp |
| ADediting_214140 | chr10_73708907_- | SINE | Alu | Name=AluSp |
| ADediting_214141 | chr10_73708933_- | SINE | Alu | Name=AluSp |
| ADediting_214142 | chr10_73709014_- | SINE | Alu | Name=AluSp |
| ADediting_214143 | chr10_73712344_- | SINE | Alu | Name=AluSc |
| ADediting_214144 | chr10_73712347_- | SINE | Alu | Name=AluSc |
| ADediting_214145 | chr10_73712926_- | SINE | Alu | Name=AluJr |
| ADediting_1524725 | chr10_73699318_- | SINE | Alu | Name=AluSx |
| ADediting_1524726 | chr10_73699508_- | SINE | Alu | Name=AluSx |
| ADediting_1524727 | chr10_73704659_- | SINE | Alu | Name=AluSx1 |
| ADediting_1524728 | chr10_73704726_- | SINE | Alu | Name=AluSx1 |
| ADediting_1524729 | chr10_73712335_- | SINE | Alu | Name=AluSc |
| ADediting_1524730 | chr10_73712364_- | SINE | Alu | Name=AluSc |
| ADediting_1524731 | chr10_73712744_- | SINE | Alu | Name=AluJr |
| ADediting_1524732 | chr10_73712754_- | SINE | Alu | Name=AluJr |
| ADediting_1524733 | chr10_73712792_- | SINE | Alu | Name=AluJr |
| ADediting_1524734 | chr10_73712848_- | SINE | Alu | Name=AluJr |
| ADediting_1524735 | chr10_73712849_- | SINE | Alu | Name=AluJr |
| ADediting_1524736 | chr10_73712852_- | SINE | Alu | Name=AluJr |
| ADediting_1524737 | chr10_73712872_- | SINE | Alu | Name=AluJr |
| ADediting_1524738 | chr10_73712880_- | SINE | Alu | Name=AluJr |
| ADediting_1606989 | chr10_73699348_- | SINE | Alu | Name=AluSx |
| ADediting_1606990 | chr10_73704690_- | SINE | Alu | Name=AluSx1 |
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RNA A-to-I editing events in the alternative splicing sites for BMS1P4 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for BMS1P4 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
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Protein coding region RNA A-to-I editings for BMS1P4 |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for BMS1P4 |
| RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. |
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| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1524725 | chr10_73699318_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-564 | chr10 | 73699314 | 73699320 | 7mer-m8 | 73699313 | 73699332 | 153 | -22.36 |
| ADediting_1606989 | chr10_73699348_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-6771-5p | chr10 | 73699346 | 73699353 | 8mer-1a | 73699346 | 73699365 | 161 | -31.74 |
| ADediting_214091 | chr10_73699331_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-1228-3p | chr10 | 73699325 | 73699332 | 8mer-1a | 73699325 | 73699342 | 150 | -21.95 |
| ADediting_214093 | chr10_73699340_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-4712-5p | chr10 | 73699339 | 73699345 | 7mer-m8 | 73699338 | 73699359 | 140 | -17.37 |
| ADediting_214093 | chr10_73699340_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-770-5p | chr10 | 73699339 | 73699345 | 7mer-m8 | 73699338 | 73699363 | 148 | -23.97 |
| ADediting_214095 | chr10_73699346_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-3189-3p | chr10 | 73699345 | 73699351 | 7mer-m8 | 73699344 | 73699367 | 145 | -23.27 |
| ADediting_214095 | chr10_73699346_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-6813-3p | chr10 | 73699343 | 73699350 | 8mer-1a | 73699343 | 73699363 | 140 | -13.48 |
| ADediting_214096 | chr10_73699347_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-326 | chr10 | 73699345 | 73699351 | 7mer-m8 | 73699344 | 73699363 | 140 | -15.33 |
| ADediting_214096 | chr10_73699347_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-330-5p | chr10 | 73699345 | 73699351 | 7mer-m8 | 73699344 | 73699365 | 140 | -22.45 |
| ADediting_214096 | chr10_73699347_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-4314 | chr10 | 73699346 | 73699352 | 7mer-m8 | 73699345 | 73699362 | 140 | -18.79 |
| ADediting_214096 | chr10_73699347_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-514a-5p | chr10 | 73699343 | 73699350 | 8mer-1a | 73699343 | 73699363 | 154 | -19.41 |
| ADediting_214099 | chr10_73699399_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-4690-3p | chr10 | 73699394 | 73699400 | 7mer-m8 | 73699393 | 73699413 | 163 | -23.65 |
| ADediting_214099 | chr10_73699399_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-5685 | chr10 | 73699394 | 73699400 | 7mer-m8 | 73699393 | 73699416 | 153 | -19.37 |
| ADediting_214100 | chr10_73699403_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-4662a-5p | chr10 | 73699399 | 73699405 | 7mer-m8 | 73699398 | 73699422 | 148 | -14.63 |
| ADediting_214102 | chr10_73699419_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-340-3p | chr10 | 73699418 | 73699424 | 7mer-m8 | 73699417 | 73699438 | 149 | -17.74 |
| ADediting_214102 | chr10_73699419_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-6827-3p | chr10 | 73699418 | 73699424 | 7mer-m8 | 73699417 | 73699437 | 153 | -17.53 |
| ADediting_214104 | chr10_73699442_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-4661-5p | chr10 | 73699441 | 73699447 | 7mer-m8 | 73699440 | 73699462 | 151 | -18.5 |
| ADediting_214104 | chr10_73699442_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-548ae-3p | chr10 | 73699437 | 73699443 | 7mer-m8 | 73699436 | 73699456 | 141 | -10.48 |
| ADediting_214104 | chr10_73699442_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-548ah-3p | chr10 | 73699437 | 73699443 | 7mer-m8 | 73699436 | 73699458 | 143 | -10.48 |
| ADediting_214104 | chr10_73699442_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-548aj-3p | chr10 | 73699437 | 73699443 | 7mer-m8 | 73699436 | 73699456 | 141 | -8.37 |
| ADediting_214104 | chr10_73699442_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-548am-3p | chr10 | 73699437 | 73699443 | 7mer-m8 | 73699436 | 73699458 | 143 | -10.48 |
| ADediting_214104 | chr10_73699442_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-548aq-3p | chr10 | 73699437 | 73699443 | 7mer-m8 | 73699436 | 73699457 | 141 | -10.48 |
| ADediting_214104 | chr10_73699442_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-548j-3p | chr10 | 73699437 | 73699443 | 7mer-m8 | 73699436 | 73699456 | 141 | -10.48 |
| ADediting_214104 | chr10_73699442_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-548x-3p | chr10 | 73699437 | 73699443 | 7mer-m8 | 73699436 | 73699455 | 141 | -8.37 |
| ADediting_214104 | chr10_73699442_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-7844-5p | chr10 | 73699439 | 73699445 | 7mer-m8 | 73699438 | 73699459 | 168 | -22.99 |
| ADediting_214105 | chr10_73699443_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-1207-3p | chr10 | 73699442 | 73699449 | 8mer-1a | 73699442 | 73699459 | 140 | -14.68 |
| ADediting_214105 | chr10_73699443_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-34a-3p | chr10 | 73699440 | 73699446 | 7mer-m8 | 73699439 | 73699461 | 141 | -8.12 |
| ADediting_214107 | chr10_73699451_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-1268a | chr10 | 73699447 | 73699454 | 8mer-1a | 73699447 | 73699464 | 170 | -31.28 |
| ADediting_214107 | chr10_73699451_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-1268b | chr10 | 73699447 | 73699454 | 8mer-1a | 73699447 | 73699466 | 170 | -31.78 |
| ADediting_214107 | chr10_73699451_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-4486 | chr10 | 73699446 | 73699452 | 7mer-m8 | 73699445 | 73699460 | 153 | -26.36 |
| ADediting_214109 | chr10_73699479_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-4691-3p | chr10 | 73699475 | 73699481 | 7mer-m8 | 73699474 | 73699501 | 150 | -26.36 |
| ADediting_214110 | chr10_73699504_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-146a-5p | chr10 | 73699499 | 73699505 | 7mer-m8 | 73699498 | 73699523 | 155 | -16.79 |
| ADediting_214110 | chr10_73699504_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-146b-5p | chr10 | 73699499 | 73699505 | 7mer-m8 | 73699498 | 73699524 | 164 | -19.27 |
| ADediting_214110 | chr10_73699504_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-606 | chr10 | 73699502 | 73699508 | 7mer-m8 | 73699501 | 73699522 | 170 | -14.09 |
| ADediting_214110 | chr10_73699504_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-7153-5p | chr10 | 73699499 | 73699505 | 7mer-m8 | 73699498 | 73699520 | 141 | -13.27 |
| ADediting_214111 | chr10_73699544_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-548ao-3p | chr10 | 73699540 | 73699546 | 7mer-m8 | 73699539 | 73699564 | 159 | -27.16 |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1524725 | chr10_73699318_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-3622b-5p | chr10 | 73699314 | 73699320 | 7mer-m8 | 73699313 | 73699332 | 151 | -19.21 |
| ADediting_1524725 | chr10_73699318_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-4253 | chr10 | 73699312 | 73699319 | 8mer-1a | 73699312 | 73699329 | 140 | -14.06 |
| ADediting_1524726 | chr10_73699508_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-12132 | chr10 | 73699503 | 73699509 | 7mer-m8 | 73699502 | 73699521 | 152 | -10.17 |
| ADediting_1606989 | chr10_73699348_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-30b-3p | chr10 | 73699347 | 73699354 | 8mer-1a | 73699347 | 73699368 | 147 | -18 |
| ADediting_1606989 | chr10_73699348_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-3689a-3p | chr10 | 73699347 | 73699354 | 8mer-1a | 73699347 | 73699368 | 141 | -19.53 |
| ADediting_1606989 | chr10_73699348_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-3689b-3p | chr10 | 73699347 | 73699354 | 8mer-1a | 73699347 | 73699368 | 141 | -19.58 |
| ADediting_1606989 | chr10_73699348_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-3689c | chr10 | 73699347 | 73699354 | 8mer-1a | 73699347 | 73699368 | 141 | -19.58 |
| ADediting_1606989 | chr10_73699348_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-6779-5p | chr10 | 73699347 | 73699354 | 8mer-1a | 73699347 | 73699370 | 143 | -22.97 |
| ADediting_1606989 | chr10_73699348_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-887-5p | chr10 | 73699346 | 73699353 | 8mer-1a | 73699346 | 73699367 | 148 | -16.93 |
| ADediting_214091 | chr10_73699331_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-6500-3p | chr10 | 73699328 | 73699334 | 7mer-m8 | 73699327 | 73699347 | 140 | -13.9 |
| ADediting_214093 | chr10_73699340_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-652-5p | chr10 | 73699334 | 73699341 | 8mer-1a | 73699334 | 73699361 | 152 | -22.73 |
| ADediting_214096 | chr10_73699347_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-887-5p | chr10 | 73699346 | 73699353 | 8mer-1a | 73699346 | 73699367 | 148 | -16.93 |
| ADediting_214097 | chr10_73699374_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-7162-3p | chr10 | 73699373 | 73699379 | 7mer-m8 | 73699372 | 73699392 | 142 | -16.3 |
| ADediting_214101 | chr10_73699406_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-7852-3p | chr10 | 73699405 | 73699411 | 7mer-m8 | 73699404 | 73699427 | 143 | -10.37 |
| ADediting_214102 | chr10_73699419_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-4421 | chr10 | 73699416 | 73699423 | 8mer-1a | 73699416 | 73699437 | 154 | -16.28 |
| ADediting_214102 | chr10_73699419_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-5699-3p | chr10 | 73699416 | 73699423 | 8mer-1a | 73699416 | 73699437 | 153 | -17.68 |
| ADediting_214102 | chr10_73699419_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-6818-3p | chr10 | 73699419 | 73699425 | 7mer-m8 | 73699418 | 73699439 | 140 | -12.56 |
| ADediting_214107 | chr10_73699451_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-4455 | chr10 | 73699447 | 73699454 | 8mer-1a | 73699447 | 73699462 | 148 | -16.7 |
| ADediting_214109 | chr10_73699479_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-5690 | chr10 | 73699475 | 73699481 | 7mer-m8 | 73699474 | 73699494 | 145 | -17.72 |
| ADediting_214110 | chr10_73699504_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-12132 | chr10 | 73699503 | 73699509 | 7mer-m8 | 73699502 | 73699521 | 152 | -10.17 |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1337757 | chr7_5495852_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-589-3p | chr10 | 73699572 | 73699578 | 7mer-m8 | 73699571 | 73704991 | 152 | -19.65 |
| ADediting_286380 | chr11_79422188_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-5579-3p | chr10 | 73718063 | 73718069 | 7mer-m8 | 73718062 | 73718087 | 149 | -15.34 |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_107020 | chr1_37500952_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-5581-3p | chr10 | 73721466 | 73721472 | 7mer-m8 | 73721465 | 73721489 | 153 | -20.1 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-589-3p | chr10 | 73721488 | 73721494 | 7mer-m8 | 73721487 | 73722392 | 143 | -19.28 |
| ADediting_496066 | chr15_66496985_- | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-4512 | chr10 | 73727309 | 73727315 | 7mer-m8 | 73727308 | 73727328 | 150 | -24.88 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000271816.1 | ENST00000580790.1 | BMS1P4-203 | hsa-miR-4775 | chr10 | 73722487 | 73722493 | 7mer-m8 | 73722486 | 73722507 | 140 | -7.52 |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| Differentially expressed gene-miRNA network |
| Differentially expressed lncRNA-miRNA network |
 |
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The effects of the RNA editing to the stability of the RNA structures for BMS1P4 |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000580790.1 | lncRNA |  |  |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_1524725 | ENST00000580790.1 | chr10_73699318_- | 1746 | -582.50 | -579.50 | -611.60 |
| ADediting_214091 | ENST00000580790.1 | chr10_73699331_- | 1733 | -579.40 | -579.50 | -611.60 |
| ADediting_214092 | ENST00000580790.1 | chr10_73699334_- | 1730 | -577.70 | -579.50 | -611.60 |
| ADediting_214093 | ENST00000580790.1 | chr10_73699340_- | 1724 | -585.00 | -579.50 | -611.60 |
| ADediting_214094 | ENST00000580790.1 | chr10_73699343_- | 1721 | -579.80 | -579.50 | -611.60 |
| ADediting_214095 | ENST00000580790.1 | chr10_73699346_- | 1718 | -586.10 | -579.50 | -611.60 |
| ADediting_214096 | ENST00000580790.1 | chr10_73699347_- | 1717 | -579.20 | -579.50 | -611.60 |
| ADediting_1606989 | ENST00000580790.1 | chr10_73699348_- | 1716 | -579.20 | -579.50 | -611.60 |
| ADediting_214097 | ENST00000580790.1 | chr10_73699374_- | 1690 | -579.50 | -579.50 | -611.60 |
| ADediting_214098 | ENST00000580790.1 | chr10_73699388_- | 1676 | -578.80 | -579.50 | -611.60 |
| ADediting_214099 | ENST00000580790.1 | chr10_73699399_- | 1665 | -586.10 | -579.50 | -611.60 |
| ADediting_214100 | ENST00000580790.1 | chr10_73699403_- | 1661 | -578.30 | -579.50 | -611.60 |
| ADediting_214101 | ENST00000580790.1 | chr10_73699406_- | 1658 | -579.50 | -579.50 | -611.60 |
| ADediting_214102 | ENST00000580790.1 | chr10_73699419_- | 1645 | -579.20 | -579.50 | -611.60 |
| ADediting_214103 | ENST00000580790.1 | chr10_73699434_- | 1630 | -580.30 | -579.50 | -611.60 |
| ADediting_214104 | ENST00000580790.1 | chr10_73699442_- | 1622 | -579.50 | -579.50 | -611.60 |
| ADediting_214105 | ENST00000580790.1 | chr10_73699443_- | 1621 | -579.50 | -579.50 | -611.60 |
| ADediting_214106 | ENST00000580790.1 | chr10_73699447_- | 1617 | -579.00 | -579.50 | -611.60 |
| ADediting_214107 | ENST00000580790.1 | chr10_73699451_- | 1613 | -580.90 | -579.50 | -611.60 |
| ADediting_214108 | ENST00000580790.1 | chr10_73699469_- | 1595 | -581.30 | -579.50 | -611.60 |
| ADediting_214109 | ENST00000580790.1 | chr10_73699479_- | 1585 | -579.20 | -579.50 | -611.60 |
| ADediting_214110 | ENST00000580790.1 | chr10_73699504_- | 1560 | -582.20 | -579.50 | -611.60 |
| ADediting_1524726 | ENST00000580790.1 | chr10_73699508_- | 1556 | -580.30 | -579.50 | -611.60 |
| ADediting_214111 | ENST00000580790.1 | chr10_73699544_- | 1520 | -579.70 | -579.50 | -611.60 |
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Relation with ADAR for BMS1P4 |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 2.65174250424682e-05 | 0.23619731163561 | 1.30412727729001e-09 | 0.335871676728876 | 0.935277671256943 | -0.00463090651569936 |
| DLPFC | 0.000641553079160263 | 0.19282511881763 | 0.917894667151368 | 0.00587859239327169 | 4.05614088887789e-49 | 0.71149052130223 |
| AC | 8.41443942996597e-09 | 0.354187926321502 | 8.91660719246017e-07 | 0.304894720349869 | 7.92701766305191e-07 | 0.306252787919568 |
| PCC | 0.00697598248459756 | 0.194626811232589 | 0.00807523581601035 | 0.191152358484031 | 2.04374546647028e-05 | 0.302960088138708 |
| CER | 5.80020441518697e-08 | 0.42528239109985 | 0.0281789147821995 | 0.179249067416401 | 0.918642917320713 | -0.00841017481366621 |
| CER | 1.32594609291409e-18 | 0.63926137179046 | 4.03820006863077e-12 | 0.527516656437232 | 0.12647329047473 | 0.125329518289764 |
| TCX | 2.15664657056431e-07 | 0.408202569194555 | 0.406511754400545 | 0.0682650811807142 | 2.41133167399225e-06 | 0.374075095776659 |
| TCX | 5.34798020862913e-05 | 0.323639538197307 | 0.934992245098096 | -0.006715901069072 | 2.43615189770624e-13 | 0.552031214556386 |
| FP | 1.15858214375615e-15 | 0.553270623650872 | 7.80403605014295e-19 | 0.600658418430018 | 0.00128500503530152 | 0.239463865073789 |
| FP | 4.76551084105233e-07 | 0.366775301243837 | 0.00351567336047118 | 0.217665360879091 | 0.0459758047290414 | 0.149788039927499 |
| IFG | 0.333234846844543 | 0.201856064384807 | 0.232988299240032 | 0.247476499369935 | 0.0112255499567068 | 0.498376857912134 |
| PG | 4.16180728525849e-14 | 0.517066350204864 | 9.01946197661653e-13 | 0.49277596287224 | 0.899806827666064 | 0.00929428633492687 |
| STG | 1.22142146808873e-09 | 0.6035973149255 | 3.09633377321576e-05 | 0.437954934743198 | 0.03574417963435 | 0.229481197234568 |
| STG | 0.0309623672046127 | 0.235614083407248 | 0.578535483535633 | 0.0614765462131577 | 0.00255800341755222 | 0.325001504136673 |
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Relation with AD stages for BMS1P4 |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
| CER | 0.000142479462348568 | 0.357981409784132 |
| TCX | 2.05654140571345e-08 | 0.511801773573787 |
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RelatedDrugs for BMS1P4 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for BMS1P4 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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