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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for BMS1P4 |
 Gene summary |
| Gene information | Gene symbol | BMS1P4 | Gene ID | 729096 |
| Gene name | BMS1 pseudogene 4 | |
| Synonyms | BMS1LP4 | |
| Cytomap | 10q22.2 | |
| Type of gene | pseudo | |
| Description | BMS1 homolog, ribosome assembly protein pseudogeneBMS1, ribosome biogenesis factor pseudogene 4BMS1L pseudogene 4 | |
| Modification date | 20200313 | |
| UniProtAcc | ||
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for BMS1P4 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_214091(73699331, -), ADediting_214092(73699334, -), ADediting_214093(73699340, -), ADediting_214094(73699343, -), ADediting_214095(73699346, -), ADediting_214096(73699347, -), ADediting_214097(73699374, -), ADediting_214098(73699388, -), ADediting_214099(73699399, -), ADediting_214100(73699403, -), ADediting_214101(73699406, -), ADediting_214102(73699419, -), ADediting_214103(73699434, -), ADediting_214104(73699442, -), ADediting_214105(73699443, -), ADediting_214106(73699447, -), ADediting_214107(73699451, -), ADediting_214108(73699469, -), ADediting_214109(73699479, -), ADediting_214110(73699504, -), ADediting_214111(73699544, -), ADediting_214112(73700091, -), ADediting_214113(73700132, -), ADediting_214114(73700150, -), ADediting_214115(73700389, -), ADediting_214116(73700560, -), ADediting_214117(73702222, -), ADediting_214118(73702275, -), ADediting_214119(73702287, -), ADediting_214120(73702288, -), ADediting_214121(73702337, -), ADediting_214122(73702364, -), ADediting_214123(73702369, -), ADediting_214124(73704587, -), ADediting_214125(73704597, -), ADediting_214126(73704615, -), ADediting_214127(73704639, -), ADediting_214128(73704645, -), ADediting_214129(73704649, -), ADediting_214130(73704666, -), ADediting_214131(73704669, -), ADediting_214132(73704714, -), ADediting_214133(73704716, -), ADediting_214134(73704775, -), ADediting_214135(73704776, -), ADediting_214136(73704792, -), ADediting_214137(73704794, -), ADediting_214138(73704824, -), ADediting_214139(73708867, -), ADediting_214140(73708907, -), ADediting_214141(73708933, -), ADediting_214142(73709014, -), ADediting_214143(73712344, -), ADediting_214144(73712347, -), ADediting_214145(73712926, -), ADediting_1524725(73699318, -), ADediting_1524726(73699508, -), ADediting_1524727(73704659, -), ADediting_1524728(73704726, -), ADediting_1524729(73712335, -), ADediting_1524730(73712364, -), ADediting_1524731(73712744, -), ADediting_1524732(73712754, -), ADediting_1524733(73712792, -), ADediting_1524734(73712848, -), ADediting_1524735(73712849, -), ADediting_1524736(73712852, -), ADediting_1524737(73712872, -), ADediting_1524738(73712880, -), ADediting_1606989(73699348, -), ADediting_1606990(73704690, -), |
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RNA editing positional annotations for BMS1P4 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_214091 | chr10_73699331_- | ncRNA_exonic |
| ADediting_214092 | chr10_73699334_- | ncRNA_exonic |
| ADediting_214093 | chr10_73699340_- | ncRNA_exonic |
| ADediting_214094 | chr10_73699343_- | ncRNA_exonic |
| ADediting_214095 | chr10_73699346_- | ncRNA_exonic |
| ADediting_214096 | chr10_73699347_- | ncRNA_exonic |
| ADediting_214097 | chr10_73699374_- | ncRNA_exonic |
| ADediting_214098 | chr10_73699388_- | ncRNA_exonic |
| ADediting_214099 | chr10_73699399_- | ncRNA_exonic |
| ADediting_214100 | chr10_73699403_- | ncRNA_exonic |
| ADediting_214101 | chr10_73699406_- | ncRNA_exonic |
| ADediting_214102 | chr10_73699419_- | ncRNA_exonic |
| ADediting_214103 | chr10_73699434_- | ncRNA_exonic |
| ADediting_214104 | chr10_73699442_- | ncRNA_exonic |
| ADediting_214105 | chr10_73699443_- | ncRNA_exonic |
| ADediting_214106 | chr10_73699447_- | ncRNA_exonic |
| ADediting_214107 | chr10_73699451_- | ncRNA_exonic |
| ADediting_214108 | chr10_73699469_- | ncRNA_exonic |
| ADediting_214109 | chr10_73699479_- | ncRNA_exonic |
| ADediting_214110 | chr10_73699504_- | ncRNA_exonic |
| ADediting_214111 | chr10_73699544_- | ncRNA_exonic |
| ADediting_214112 | chr10_73700091_- | ncRNA_intronic |
| ADediting_214113 | chr10_73700132_- | ncRNA_intronic |
| ADediting_214114 | chr10_73700150_- | ncRNA_intronic |
| ADediting_214115 | chr10_73700389_- | ncRNA_intronic |
| ADediting_214116 | chr10_73700560_- | ncRNA_intronic |
| ADediting_214117 | chr10_73702222_- | ncRNA_intronic |
| ADediting_214118 | chr10_73702275_- | ncRNA_intronic |
| ADediting_214119 | chr10_73702287_- | ncRNA_intronic |
| ADediting_214120 | chr10_73702288_- | ncRNA_intronic |
| ADediting_214121 | chr10_73702337_- | ncRNA_intronic |
| ADediting_214122 | chr10_73702364_- | ncRNA_intronic |
| ADediting_214123 | chr10_73702369_- | ncRNA_intronic |
| ADediting_214124 | chr10_73704587_- | ncRNA_intronic |
| ADediting_214125 | chr10_73704597_- | ncRNA_intronic |
| ADediting_214126 | chr10_73704615_- | ncRNA_intronic |
| ADediting_214127 | chr10_73704639_- | ncRNA_intronic |
| ADediting_214128 | chr10_73704645_- | ncRNA_intronic |
| ADediting_214129 | chr10_73704649_- | ncRNA_intronic |
| ADediting_214130 | chr10_73704666_- | ncRNA_intronic |
| ADediting_214131 | chr10_73704669_- | ncRNA_intronic |
| ADediting_214132 | chr10_73704714_- | ncRNA_intronic |
| ADediting_214133 | chr10_73704716_- | ncRNA_intronic |
| ADediting_214134 | chr10_73704775_- | ncRNA_intronic |
| ADediting_214135 | chr10_73704776_- | ncRNA_intronic |
| ADediting_214136 | chr10_73704792_- | ncRNA_intronic |
| ADediting_214137 | chr10_73704794_- | ncRNA_intronic |
| ADediting_214138 | chr10_73704824_- | ncRNA_intronic |
| ADediting_214139 | chr10_73708867_- | ncRNA_intronic |
| ADediting_214140 | chr10_73708907_- | ncRNA_intronic |
| ADediting_214141 | chr10_73708933_- | ncRNA_intronic |
| ADediting_214142 | chr10_73709014_- | ncRNA_intronic |
| ADediting_214143 | chr10_73712344_- | ncRNA_intronic |
| ADediting_214144 | chr10_73712347_- | ncRNA_intronic |
| ADediting_214145 | chr10_73712926_- | ncRNA_intronic |
| ADediting_1524725 | chr10_73699318_- | ncRNA_exonic |
| ADediting_1524726 | chr10_73699508_- | ncRNA_exonic |
| ADediting_1524727 | chr10_73704659_- | ncRNA_intronic |
| ADediting_1524728 | chr10_73704726_- | ncRNA_intronic |
| ADediting_1524729 | chr10_73712335_- | ncRNA_intronic |
| ADediting_1524730 | chr10_73712364_- | ncRNA_intronic |
| ADediting_1524731 | chr10_73712744_- | ncRNA_intronic |
| ADediting_1524732 | chr10_73712754_- | ncRNA_intronic |
| ADediting_1524733 | chr10_73712792_- | ncRNA_intronic |
| ADediting_1524734 | chr10_73712848_- | ncRNA_intronic |
| ADediting_1524735 | chr10_73712849_- | ncRNA_intronic |
| ADediting_1524736 | chr10_73712852_- | ncRNA_intronic |
| ADediting_1524737 | chr10_73712872_- | ncRNA_intronic |
| ADediting_1524738 | chr10_73712880_- | ncRNA_intronic |
| ADediting_1606989 | chr10_73699348_- | ncRNA_exonic |
| ADediting_1606990 | chr10_73704690_- | ncRNA_intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_214091 | chr10_73699331_- | SINE | Alu | Name=AluSx |
| ADediting_214092 | chr10_73699334_- | SINE | Alu | Name=AluSx |
| ADediting_214093 | chr10_73699340_- | SINE | Alu | Name=AluSx |
| ADediting_214094 | chr10_73699343_- | SINE | Alu | Name=AluSx |
| ADediting_214095 | chr10_73699346_- | SINE | Alu | Name=AluSx |
| ADediting_214096 | chr10_73699347_- | SINE | Alu | Name=AluSx |
| ADediting_214097 | chr10_73699374_- | SINE | Alu | Name=AluSx |
| ADediting_214098 | chr10_73699388_- | SINE | Alu | Name=AluSx |
| ADediting_214099 | chr10_73699399_- | SINE | Alu | Name=AluSx |
| ADediting_214100 | chr10_73699403_- | SINE | Alu | Name=AluSx |
| ADediting_214101 | chr10_73699406_- | SINE | Alu | Name=AluSx |
| ADediting_214102 | chr10_73699419_- | SINE | Alu | Name=AluSx |
| ADediting_214103 | chr10_73699434_- | SINE | Alu | Name=AluSx |
| ADediting_214104 | chr10_73699442_- | SINE | Alu | Name=AluSx |
| ADediting_214105 | chr10_73699443_- | SINE | Alu | Name=AluSx |
| ADediting_214106 | chr10_73699447_- | SINE | Alu | Name=AluSx |
| ADediting_214107 | chr10_73699451_- | SINE | Alu | Name=AluSx |
| ADediting_214108 | chr10_73699469_- | SINE | Alu | Name=AluSx |
| ADediting_214109 | chr10_73699479_- | SINE | Alu | Name=AluSx |
| ADediting_214110 | chr10_73699504_- | SINE | Alu | Name=AluSx |
| ADediting_214111 | chr10_73699544_- | SINE | Alu | Name=AluSx |
| ADediting_214112 | chr10_73700091_- | SINE | Alu | Name=AluSp |
| ADediting_214113 | chr10_73700132_- | SINE | Alu | Name=AluSp |
| ADediting_214114 | chr10_73700150_- | SINE | Alu | Name=AluSp |
| ADediting_214115 | chr10_73700389_- | SINE | Alu | Name=AluSx1 |
| ADediting_214116 | chr10_73700560_- | SINE | Alu | Name=AluSx1 |
| ADediting_214117 | chr10_73702222_- | SINE | Alu | Name=AluY |
| ADediting_214118 | chr10_73702275_- | SINE | Alu | Name=AluY |
| ADediting_214119 | chr10_73702287_- | SINE | Alu | Name=AluY |
| ADediting_214120 | chr10_73702288_- | SINE | Alu | Name=AluY |
| ADediting_214121 | chr10_73702337_- | SINE | Alu | Name=AluY |
| ADediting_214122 | chr10_73702364_- | SINE | Alu | Name=AluY |
| ADediting_214123 | chr10_73702369_- | SINE | Alu | Name=AluY |
| ADediting_214124 | chr10_73704587_- | SINE | Alu | Name=AluSx1 |
| ADediting_214125 | chr10_73704597_- | SINE | Alu | Name=AluSx1 |
| ADediting_214126 | chr10_73704615_- | SINE | Alu | Name=AluSx1 |
| ADediting_214127 | chr10_73704639_- | SINE | Alu | Name=AluSx1 |
| ADediting_214128 | chr10_73704645_- | SINE | Alu | Name=AluSx1 |
| ADediting_214129 | chr10_73704649_- | SINE | Alu | Name=AluSx1 |
| ADediting_214130 | chr10_73704666_- | SINE | Alu | Name=AluSx1 |
| ADediting_214131 | chr10_73704669_- | SINE | Alu | Name=AluSx1 |
| ADediting_214132 | chr10_73704714_- | SINE | Alu | Name=AluSx1 |
| ADediting_214133 | chr10_73704716_- | SINE | Alu | Name=AluSx1 |
| ADediting_214134 | chr10_73704775_- | SINE | Alu | Name=AluSx1 |
| ADediting_214135 | chr10_73704776_- | SINE | Alu | Name=AluSx1 |
| ADediting_214136 | chr10_73704792_- | SINE | Alu | Name=AluSx1 |
| ADediting_214137 | chr10_73704794_- | SINE | Alu | Name=AluSx1 |
| ADediting_214138 | chr10_73704824_- | SINE | Alu | Name=AluSx1 |
| ADediting_214139 | chr10_73708867_- | SINE | Alu | Name=AluSp |
| ADediting_214140 | chr10_73708907_- | SINE | Alu | Name=AluSp |
| ADediting_214141 | chr10_73708933_- | SINE | Alu | Name=AluSp |
| ADediting_214142 | chr10_73709014_- | SINE | Alu | Name=AluSp |
| ADediting_214143 | chr10_73712344_- | SINE | Alu | Name=AluSc |
| ADediting_214144 | chr10_73712347_- | SINE | Alu | Name=AluSc |
| ADediting_214145 | chr10_73712926_- | SINE | Alu | Name=AluJr |
| ADediting_1524725 | chr10_73699318_- | SINE | Alu | Name=AluSx |
| ADediting_1524726 | chr10_73699508_- | SINE | Alu | Name=AluSx |
| ADediting_1524727 | chr10_73704659_- | SINE | Alu | Name=AluSx1 |
| ADediting_1524728 | chr10_73704726_- | SINE | Alu | Name=AluSx1 |
| ADediting_1524729 | chr10_73712335_- | SINE | Alu | Name=AluSc |
| ADediting_1524730 | chr10_73712364_- | SINE | Alu | Name=AluSc |
| ADediting_1524731 | chr10_73712744_- | SINE | Alu | Name=AluJr |
| ADediting_1524732 | chr10_73712754_- | SINE | Alu | Name=AluJr |
| ADediting_1524733 | chr10_73712792_- | SINE | Alu | Name=AluJr |
| ADediting_1524734 | chr10_73712848_- | SINE | Alu | Name=AluJr |
| ADediting_1524735 | chr10_73712849_- | SINE | Alu | Name=AluJr |
| ADediting_1524736 | chr10_73712852_- | SINE | Alu | Name=AluJr |
| ADediting_1524737 | chr10_73712872_- | SINE | Alu | Name=AluJr |
| ADediting_1524738 | chr10_73712880_- | SINE | Alu | Name=AluJr |
| ADediting_1606989 | chr10_73699348_- | SINE | Alu | Name=AluSx |
| ADediting_1606990 | chr10_73704690_- | SINE | Alu | Name=AluSx1 |
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RNA A-to-I editing events in the alternative splicing sites for BMS1P4 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for BMS1P4 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |