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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited versus non-edited samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with AD stages

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene


Gene summary for GXYLT2

check button Gene summary
Gene informationGene symbol

GXYLT2

Gene ID

727936

Gene nameglucoside xylosyltransferase 2
SynonymsGLT8D4
Cytomap

3p13

Type of geneprotein-coding
Descriptionglucoside xylosyltransferase 2glycosyltransferase 8 domain containing 4glycosyltransferase 8 domain-containing protein 4
Modification date20200313
UniProtAcc

A0PJZ3,

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
GXYLT2

GO:0016266

O-glycan processing

19940119


Top

RNA A-to-I events for GXYLT2

check buttonRNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
all structure

check button RNA editing frequencies across three data sets.
boxplot

check buttonThe number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
boxplot

check button RNA A-to-I editing events in AD.
ADediting_1094527(72905010, +), ADediting_1094528(72905015, +), ADediting_1094529(72905022, +), ADediting_1094530(72905179, +), ADediting_1094531(72905247, +), ADediting_1094532(72905352, +), ADediting_1094533(72931497, +), ADediting_1094534(72932170, +), ADediting_1094535(72932192, +), ADediting_1094536(72936058, +), ADediting_1094537(72936099, +), ADediting_1094538(72936108, +), ADediting_1094539(72968060, +), ADediting_1094540(72968217, +), ADediting_1094541(72968226, +), ADediting_1094542(72968236, +), ADediting_1094543(72968829, +), ADediting_1094544(72968880, +), ADediting_1094545(72968950, +), ADediting_1094546(72969546, +), ADediting_1094547(72969605, +), ADediting_1094548(72970095, +), ADediting_1094549(72970096, +), ADediting_1094550(72970126, +), ADediting_1094551(72970283, +), ADediting_1094552(72970314, +), ADediting_1094553(72970627, +), ADediting_1094554(72970742, +), ADediting_1094555(72971694, +), ADediting_1094556(72971881, +), ADediting_1094557(72971888, +), ADediting_1094558(72971894, +), ADediting_1094559(72972520, +), ADediting_1094560(72975963, +), ADediting_1094561(72975980, +), ADediting_1094562(72975983, +), ADediting_1094563(72975993, +), ADediting_1094564(72976018, +), ADediting_1094565(72976032, +), ADediting_1094566(72976042, +), ADediting_1094567(72976049, +), ADediting_1094568(72976061, +), ADediting_1094569(72976071, +), ADediting_1094570(72976074, +), ADediting_1094571(72976089, +), ADediting_1094572(72976097, +), ADediting_1094573(72976112, +), ADediting_1094574(72976115, +), ADediting_1094575(72976132, +), ADediting_1094576(72976167, +), ADediting_1094577(72976184, +), ADediting_1094578(72976194, +), ADediting_1094579(72976206, +), ADediting_1094580(72976209, +), ADediting_1094581(72977456, +), ADediting_1094582(72977881, +), ADediting_1094583(72978073, +), ADediting_1094584(72978083, +), ADediting_1094585(72978091, +), ADediting_1094586(72978092, +), ADediting_1094587(72978097, +), ADediting_1094588(72978130, +), ADediting_1094589(72978143, +), ADediting_1094590(72978144, +), ADediting_1094591(72978169, +), ADediting_1094592(72978180, +), ADediting_1094593(72978183, +), ADediting_1094594(72978184, +), ADediting_1094595(72978185, +), ADediting_1094596(72978186, +), ADediting_1094597(72978189, +), ADediting_1094598(72978192, +), ADediting_1094599(72978193, +), ADediting_1094600(72978194, +), ADediting_1094601(72978195, +), ADediting_1094602(72978196, +), ADediting_1094603(72978199, +), ADediting_1094604(72978227, +), ADediting_1094605(72978231, +), ADediting_1094606(72978244, +), ADediting_1094607(72978248, +), ADediting_1094608(72978254, +), ADediting_1094609(72978263, +), ADediting_1094610(72978283, +), ADediting_1094611(72978292, +), ADediting_1094612(72978307, +), ADediting_1094613(72978324, +), ADediting_1094614(72979281, +), ADediting_1094615(72979282, +), ADediting_1094616(72979288, +), ADediting_1094617(72979404, +), ADediting_1094618(72979436, +), ADediting_1094619(72979458, +), ADediting_1094620(72979459, +), ADediting_1094621(72979471, +), ADediting_1094622(72979480, +), ADediting_1094623(72979690, +), ADediting_1094624(72979712, +), ADediting_1094625(72979715, +), ADediting_1094626(72979720, +), ADediting_1094627(72979744, +), ADediting_1094628(72979751, +), ADediting_1094629(72979752, +), ADediting_1094630(72979761, +), ADediting_1094631(72979768, +), ADediting_1094632(72979780, +), ADediting_1094633(72979816, +), ADediting_1094634(72979817, +), ADediting_1094635(72979831, +), ADediting_1094636(72979834, +), ADediting_1094637(72979838, +), ADediting_1094638(72979848, +), ADediting_1094639(72979851, +), ADediting_1094640(72979871, +), ADediting_1094641(72979894, +), ADediting_1094642(72979912, +), ADediting_1094643(72979913, +), ADediting_1094644(72979916, +), ADediting_1094645(72979925, +), ADediting_1094646(72979931, +), ADediting_1094647(72980633, +), ADediting_1094648(72980644, +), ADediting_1094649(72980661, +), ADediting_1094650(72980675, +), ADediting_1094651(72980692, +), ADediting_1094652(72980704, +), ADediting_1094653(72980741, +), ADediting_1094654(72980756, +), ADediting_1094655(72980759, +), ADediting_1094656(72980776, +), ADediting_1094657(72980796, +), ADediting_1094658(72980819, +), ADediting_1094659(72980823, +), ADediting_1094660(72980838, +), ADediting_1094661(72980850, +), ADediting_1094662(72981736, +), ADediting_1094663(72981861, +), ADediting_1094664(72981874, +), ADediting_1094665(72981877, +), ADediting_1094666(72981887, +), ADediting_1094667(72986665, +), ADediting_1094668(72986692, +), ADediting_1094669(72986700, +), ADediting_1094670(72987121, +), ADediting_1094671(72987123, +), ADediting_1094672(72987133, +), ADediting_1094673(72987255, +), ADediting_1094674(72987256, +), ADediting_1094675(72987268, +), ADediting_1575626(72980593, +),

Top

RNA editing positional annotations for GXYLT2 using Annovar

check button Protein coding RNA editing(s).
ADeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
ADeditome IDPositionVariant type
ADediting_1094527chr3_72905010_+intronic
ADediting_1094528chr3_72905015_+intronic
ADediting_1094529chr3_72905022_+intronic
ADediting_1094530chr3_72905179_+intronic
ADediting_1094531chr3_72905247_+intronic
ADediting_1094532chr3_72905352_+intronic
ADediting_1094533chr3_72931497_+intronic
ADediting_1094534chr3_72932170_+intronic
ADediting_1094535chr3_72932192_+intronic
ADediting_1094536chr3_72936058_+intronic
ADediting_1094537chr3_72936099_+intronic
ADediting_1094538chr3_72936108_+intronic
ADediting_1094539chr3_72968060_+intronic
ADediting_1094540chr3_72968217_+intronic
ADediting_1094541chr3_72968226_+intronic
ADediting_1094542chr3_72968236_+intronic
ADediting_1094543chr3_72968829_+intronic
ADediting_1094544chr3_72968880_+intronic
ADediting_1094545chr3_72968950_+intronic
ADediting_1094546chr3_72969546_+intronic
ADediting_1094547chr3_72969605_+intronic
ADediting_1094548chr3_72970095_+intronic
ADediting_1094549chr3_72970096_+intronic
ADediting_1094550chr3_72970126_+intronic
ADediting_1094551chr3_72970283_+intronic
ADediting_1094552chr3_72970314_+intronic
ADediting_1094553chr3_72970627_+intronic
ADediting_1094554chr3_72970742_+intronic
ADediting_1094555chr3_72971694_+intronic
ADediting_1094556chr3_72971881_+intronic
ADediting_1094557chr3_72971888_+intronic
ADediting_1094558chr3_72971894_+intronic
ADediting_1094559chr3_72972520_+intronic
ADediting_1094560chr3_72975963_+UTR3
ADediting_1094561chr3_72975980_+UTR3
ADediting_1094562chr3_72975983_+UTR3
ADediting_1094563chr3_72975993_+UTR3
ADediting_1094564chr3_72976018_+UTR3
ADediting_1094565chr3_72976032_+UTR3
ADediting_1094566chr3_72976042_+UTR3
ADediting_1094567chr3_72976049_+UTR3
ADediting_1094568chr3_72976061_+UTR3
ADediting_1094569chr3_72976071_+UTR3
ADediting_1094570chr3_72976074_+UTR3
ADediting_1094571chr3_72976089_+UTR3
ADediting_1094572chr3_72976097_+UTR3
ADediting_1094573chr3_72976112_+UTR3
ADediting_1094574chr3_72976115_+UTR3
ADediting_1094575chr3_72976132_+UTR3
ADediting_1094576chr3_72976167_+UTR3
ADediting_1094577chr3_72976184_+UTR3
ADediting_1094578chr3_72976194_+UTR3
ADediting_1094579chr3_72976206_+UTR3
ADediting_1094580chr3_72976209_+UTR3
ADediting_1094581chr3_72977456_+intronic
ADediting_1094582chr3_72977881_+intronic
ADediting_1094583chr3_72978073_+intronic
ADediting_1094584chr3_72978083_+intronic
ADediting_1094585chr3_72978091_+intronic
ADediting_1094586chr3_72978092_+intronic
ADediting_1094587chr3_72978097_+intronic
ADediting_1094588chr3_72978130_+intronic
ADediting_1094589chr3_72978143_+intronic
ADediting_1094590chr3_72978144_+intronic
ADediting_1094591chr3_72978169_+intronic
ADediting_1094592chr3_72978180_+intronic
ADediting_1094593chr3_72978183_+intronic
ADediting_1094594chr3_72978184_+intronic
ADediting_1094595chr3_72978185_+intronic
ADediting_1094596chr3_72978186_+intronic
ADediting_1094597chr3_72978189_+intronic
ADediting_1094598chr3_72978192_+intronic
ADediting_1094599chr3_72978193_+intronic
ADediting_1094600chr3_72978194_+intronic
ADediting_1094601chr3_72978195_+intronic
ADediting_1094602chr3_72978196_+intronic
ADediting_1094603chr3_72978199_+intronic
ADediting_1094604chr3_72978227_+intronic
ADediting_1094605chr3_72978231_+intronic
ADediting_1094606chr3_72978244_+intronic
ADediting_1094607chr3_72978248_+intronic
ADediting_1094608chr3_72978254_+intronic
ADediting_1094609chr3_72978263_+intronic
ADediting_1094610chr3_72978283_+intronic
ADediting_1094611chr3_72978292_+intronic
ADediting_1094612chr3_72978307_+intronic
ADediting_1094613chr3_72978324_+intronic
ADediting_1094614chr3_72979281_+intronic
ADediting_1094615chr3_72979282_+intronic
ADediting_1094616chr3_72979288_+intronic
ADediting_1094617chr3_72979404_+intronic
ADediting_1094618chr3_72979436_+intronic
ADediting_1094619chr3_72979458_+intronic
ADediting_1094620chr3_72979459_+intronic
ADediting_1094621chr3_72979471_+intronic
ADediting_1094622chr3_72979480_+intronic
ADediting_1094623chr3_72979690_+intronic
ADediting_1094624chr3_72979712_+intronic
ADediting_1094625chr3_72979715_+intronic
ADediting_1094626chr3_72979720_+intronic
ADediting_1094627chr3_72979744_+intronic
ADediting_1094628chr3_72979751_+intronic
ADediting_1094629chr3_72979752_+intronic
ADediting_1094630chr3_72979761_+intronic
ADediting_1094631chr3_72979768_+intronic
ADediting_1094632chr3_72979780_+intronic
ADediting_1094633chr3_72979816_+intronic
ADediting_1094634chr3_72979817_+intronic
ADediting_1094635chr3_72979831_+intronic
ADediting_1094636chr3_72979834_+intronic
ADediting_1094637chr3_72979838_+intronic
ADediting_1094638chr3_72979848_+intronic
ADediting_1094639chr3_72979851_+intronic
ADediting_1094640chr3_72979871_+intronic
ADediting_1094641chr3_72979894_+intronic
ADediting_1094642chr3_72979912_+intronic
ADediting_1094643chr3_72979913_+intronic
ADediting_1094644chr3_72979916_+intronic
ADediting_1094645chr3_72979925_+intronic
ADediting_1094646chr3_72979931_+intronic
ADediting_1094647chr3_72980633_+intronic
ADediting_1094648chr3_72980644_+intronic
ADediting_1094649chr3_72980661_+intronic
ADediting_1094650chr3_72980675_+intronic
ADediting_1094651chr3_72980692_+intronic
ADediting_1094652chr3_72980704_+intronic
ADediting_1094653chr3_72980741_+intronic
ADediting_1094654chr3_72980756_+intronic
ADediting_1094655chr3_72980759_+intronic
ADediting_1094656chr3_72980776_+intronic
ADediting_1094657chr3_72980796_+intronic
ADediting_1094658chr3_72980819_+intronic
ADediting_1094659chr3_72980823_+intronic
ADediting_1094660chr3_72980838_+intronic
ADediting_1094661chr3_72980850_+intronic
ADediting_1094662chr3_72981736_+intronic
ADediting_1094663chr3_72981861_+intronic
ADediting_1094664chr3_72981874_+intronic
ADediting_1094665chr3_72981877_+intronic
ADediting_1094666chr3_72981887_+intronic
ADediting_1094667chr3_72986665_+intronic
ADediting_1094668chr3_72986692_+intronic
ADediting_1094669chr3_72986700_+intronic
ADediting_1094670chr3_72987121_+intronic
ADediting_1094671chr3_72987123_+intronic
ADediting_1094672chr3_72987133_+intronic
ADediting_1094673chr3_72987255_+intronic
ADediting_1094674chr3_72987256_+intronic
ADediting_1094675chr3_72987268_+intronic
ADediting_1575626chr3_72980593_+intronic

check button Repat-regional RNA editing(s).
ADeditome IDPositionRepeat familyRepeat sub familyRepeat name
ADediting_1094527chr3_72905010_+SINEAluName=AluSz6
ADediting_1094528chr3_72905015_+SINEAluName=AluSz6
ADediting_1094529chr3_72905022_+SINEAluName=AluSz6
ADediting_1094530chr3_72905179_+SINEAluName=AluSz
ADediting_1094531chr3_72905247_+SINEAluName=AluSz
ADediting_1094532chr3_72905352_+SINEAluName=AluSz
ADediting_1094533chr3_72931497_+SINEAluName=AluY
ADediting_1094534chr3_72932170_+SINEAluName=AluSq2
ADediting_1094535chr3_72932192_+SINEAluName=AluSq2
ADediting_1094536chr3_72936058_+SINEAluName=AluSc8
ADediting_1094537chr3_72936099_+SINEAluName=AluSc8
ADediting_1094538chr3_72936108_+SINEAluName=AluSc8
ADediting_1094539chr3_72968060_+SINEAluName=AluSz
ADediting_1094540chr3_72968217_+SINEAluName=AluSz
ADediting_1094541chr3_72968226_+SINEAluName=AluSz
ADediting_1094542chr3_72968236_+SINEAluName=AluSz
ADediting_1094543chr3_72968829_+SINEAluName=AluY
ADediting_1094544chr3_72968880_+SINEAluName=AluY
ADediting_1094545chr3_72968950_+SINEAluName=AluY
ADediting_1094546chr3_72969546_+SINEAluName=AluJr
ADediting_1094547chr3_72969605_+SINEAluName=AluJr
ADediting_1094548chr3_72970095_+SINEAluName=AluSz
ADediting_1094549chr3_72970096_+SINEAluName=AluSz
ADediting_1094550chr3_72970126_+SINEAluName=AluSz
ADediting_1094551chr3_72970283_+SINEAluName=AluSz
ADediting_1094552chr3_72970314_+SINEAluName=AluSz
ADediting_1094553chr3_72970627_+SINEAluName=AluSp
ADediting_1094554chr3_72970742_+SINEAluName=AluSp
ADediting_1094555chr3_72971694_+SINEAluName=AluSz
ADediting_1094556chr3_72971881_+SINEAluName=AluSz
ADediting_1094557chr3_72971888_+SINEAluName=AluSz
ADediting_1094558chr3_72971894_+SINEAluName=AluSz
ADediting_1094559chr3_72972520_+SINEAluName=AluSx1
ADediting_1094560chr3_72975963_+SINEAluName=AluSz
ADediting_1094561chr3_72975980_+SINEAluName=AluSz
ADediting_1094562chr3_72975983_+SINEAluName=AluSz
ADediting_1094563chr3_72975993_+SINEAluName=AluSz
ADediting_1094564chr3_72976018_+SINEAluName=AluSz
ADediting_1094565chr3_72976032_+SINEAluName=AluSz
ADediting_1094566chr3_72976042_+SINEAluName=AluSz
ADediting_1094567chr3_72976049_+SINEAluName=AluSz
ADediting_1094568chr3_72976061_+SINEAluName=AluSz
ADediting_1094569chr3_72976071_+SINEAluName=AluSz
ADediting_1094570chr3_72976074_+SINEAluName=AluSz
ADediting_1094571chr3_72976089_+SINEAluName=AluSz
ADediting_1094572chr3_72976097_+SINEAluName=AluSz
ADediting_1094573chr3_72976112_+SINEAluName=AluSz
ADediting_1094574chr3_72976115_+SINEAluName=AluSz
ADediting_1094575chr3_72976132_+SINEAluName=AluSz
ADediting_1094576chr3_72976167_+SINEAluName=AluSz
ADediting_1094577chr3_72976184_+SINEAluName=AluSz
ADediting_1094578chr3_72976194_+SINEAluName=AluSz
ADediting_1094579chr3_72976206_+SINEAluName=AluSz
ADediting_1094580chr3_72976209_+SINEAluName=AluSz
ADediting_1094581chr3_72977456_+SINEMIRName=MIRc
ADediting_1094583chr3_72978073_+SINEAluName=AluY
ADediting_1094584chr3_72978083_+SINEAluName=AluY
ADediting_1094585chr3_72978091_+SINEAluName=AluY
ADediting_1094586chr3_72978092_+SINEAluName=AluY
ADediting_1094587chr3_72978097_+SINEAluName=AluY
ADediting_1094588chr3_72978130_+SINEAluName=AluY
ADediting_1094589chr3_72978143_+SINEAluName=AluY
ADediting_1094590chr3_72978144_+SINEAluName=AluY
ADediting_1094591chr3_72978169_+SINEAluName=AluY
ADediting_1094592chr3_72978180_+SINEAluName=AluY
ADediting_1094593chr3_72978183_+SINEAluName=AluY
ADediting_1094594chr3_72978184_+SINEAluName=AluY
ADediting_1094595chr3_72978185_+SINEAluName=AluY
ADediting_1094596chr3_72978186_+SINEAluName=AluY
ADediting_1094597chr3_72978189_+SINEAluName=AluY
ADediting_1094598chr3_72978192_+SINEAluName=AluY
ADediting_1094599chr3_72978193_+SINEAluName=AluY
ADediting_1094600chr3_72978194_+SINEAluName=AluY
ADediting_1094601chr3_72978195_+SINEAluName=AluY
ADediting_1094602chr3_72978196_+SINEAluName=AluY
ADediting_1094603chr3_72978199_+SINEAluName=AluY
ADediting_1094604chr3_72978227_+SINEAluName=AluY
ADediting_1094605chr3_72978231_+SINEAluName=AluY
ADediting_1094606chr3_72978244_+SINEAluName=AluY
ADediting_1094607chr3_72978248_+SINEAluName=AluY
ADediting_1094608chr3_72978254_+SINEAluName=AluY
ADediting_1094609chr3_72978263_+SINEAluName=AluY
ADediting_1094610chr3_72978283_+SINEAluName=AluY
ADediting_1094611chr3_72978292_+SINEAluName=AluY
ADediting_1094612chr3_72978307_+SINEAluName=AluY
ADediting_1094613chr3_72978324_+SINEAluName=AluY
ADediting_1094614chr3_72979281_+SINEAluName=AluY
ADediting_1094615chr3_72979282_+SINEAluName=AluY
ADediting_1094616chr3_72979288_+SINEAluName=AluY
ADediting_1094617chr3_72979404_+SINEAluName=AluY
ADediting_1094618chr3_72979436_+SINEAluName=AluY
ADediting_1094619chr3_72979458_+SINEAluName=AluY
ADediting_1094620chr3_72979459_+SINEAluName=AluY
ADediting_1094621chr3_72979471_+SINEAluName=AluY
ADediting_1094622chr3_72979480_+SINEAluName=AluY
ADediting_1094623chr3_72979690_+SINEAluName=AluSz
ADediting_1094624chr3_72979712_+SINEAluName=AluSz
ADediting_1094625chr3_72979715_+SINEAluName=AluSz
ADediting_1094626chr3_72979720_+SINEAluName=AluSz
ADediting_1094627chr3_72979744_+SINEAluName=AluSz
ADediting_1094628chr3_72979751_+SINEAluName=AluSz
ADediting_1094629chr3_72979752_+SINEAluName=AluSz
ADediting_1094630chr3_72979761_+SINEAluName=AluSz
ADediting_1094631chr3_72979768_+SINEAluName=AluSz
ADediting_1094632chr3_72979780_+SINEAluName=AluSz
ADediting_1094633chr3_72979816_+SINEAluName=AluSz
ADediting_1094634chr3_72979817_+SINEAluName=AluSz
ADediting_1094635chr3_72979831_+SINEAluName=AluSz
ADediting_1094636chr3_72979834_+SINEAluName=AluSz
ADediting_1094637chr3_72979838_+SINEAluName=AluSz
ADediting_1094638chr3_72979848_+SINEAluName=AluSz
ADediting_1094639chr3_72979851_+SINEAluName=AluSz
ADediting_1094640chr3_72979871_+SINEAluName=AluSz
ADediting_1094641chr3_72979894_+SINEAluName=AluSz
ADediting_1094642chr3_72979912_+SINEAluName=AluSz
ADediting_1094643chr3_72979913_+SINEAluName=AluSz
ADediting_1094644chr3_72979916_+SINEAluName=AluSz
ADediting_1094645chr3_72979925_+SINEAluName=AluSz
ADediting_1094646chr3_72979931_+SINEAluName=AluSz
ADediting_1094647chr3_72980633_+SINEAluName=AluSq
ADediting_1094648chr3_72980644_+SINEAluName=AluSq
ADediting_1094649chr3_72980661_+SINEAluName=AluSq
ADediting_1094650chr3_72980675_+SINEAluName=AluSq
ADediting_1094651chr3_72980692_+SINEAluName=AluSq
ADediting_1094652chr3_72980704_+SINEAluName=AluSq
ADediting_1094653chr3_72980741_+SINEAluName=AluSq
ADediting_1094654chr3_72980756_+SINEAluName=AluSq
ADediting_1094655chr3_72980759_+SINEAluName=AluSq
ADediting_1094656chr3_72980776_+SINEAluName=AluSq
ADediting_1094657chr3_72980796_+SINEAluName=AluSq
ADediting_1094658chr3_72980819_+SINEAluName=AluSq
ADediting_1094659chr3_72980823_+SINEAluName=AluSq
ADediting_1094660chr3_72980838_+SINEAluName=AluSq
ADediting_1094661chr3_72980850_+SINEAluName=AluSq
ADediting_1094662chr3_72981736_+SINEAluName=AluSx1
ADediting_1094663chr3_72981861_+SINEAluName=AluSx1
ADediting_1094664chr3_72981874_+SINEAluName=AluSx1
ADediting_1094665chr3_72981877_+SINEAluName=AluSx1
ADediting_1094666chr3_72981887_+SINEAluName=AluSx1
ADediting_1094667chr3_72986665_+SINEAluName=AluSx1
ADediting_1094668chr3_72986692_+SINEAluName=AluSx1
ADediting_1094669chr3_72986700_+SINEAluName=AluSx1
ADediting_1094670chr3_72987121_+SINEAluName=AluYm1
ADediting_1094671chr3_72987123_+SINEAluName=AluYm1
ADediting_1094672chr3_72987133_+SINEAluName=AluYm1
ADediting_1094673chr3_72987255_+SINEAluName=AluYm1
ADediting_1094674chr3_72987256_+SINEAluName=AluYm1
ADediting_1094675chr3_72987268_+SINEAluName=AluYm1
ADediting_1575626chr3_72980593_+SINEAluName=AluSq

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RNA A-to-I editing events in the alternative splicing sites for GXYLT2

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeADeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for GXYLT2

check button Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

check button Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
Soverview

check button - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
Soverview
ADeditome IDChrPositoingSkipped exonENSGENSTs

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Protein coding region RNA A-to-I editings for GXYLT2

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for GXYLT2

check buttonRNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
all structure

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1094561chr3_72975980_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-6512-3pchr372975975729759828mer-1a7297595972975982141-17.36
ADediting_1094561chr3_72975980_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-6720-5pchr372975975729759828mer-1a7297596172975982146-21.24
ADediting_1094561chr3_72975980_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-6849-3pchr372975974729759818mer-1a7297595972975981150-19.2
ADediting_1094562chr3_72975983_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-1251-5pchr372975976729759827mer-m87297596072975983144-17.26
ADediting_1094562chr3_72975983_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-4793-3pchr372975981729759877mer-m87297596572975988155-22.63
ADediting_1094562chr3_72975983_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-7703chr372975980729759867mer-m87297596572975987166-27.35
ADediting_1094563chr3_72975993_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-4258chr372975988729759958mer-1a7297597972975995159-19.37
ADediting_1094565chr3_72976032_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-3622a-3pchr372976028729760358mer-1a7297601472976035148-20.48
ADediting_1094565chr3_72976032_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-3622b-3pchr372976028729760358mer-1a7297601572976035153-22.31
ADediting_1094566chr3_72976042_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-3622a-5pchr372976040729760467mer-m87297602772976047162-25.89
ADediting_1094567chr3_72976049_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-6089chr372976047729760537mer-m87297603172976054156-33.47
ADediting_1094568chr3_72976061_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-4252chr372976056729760627mer-m87297604572976063143-14.59
ADediting_1094568chr3_72976061_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-4691-3pchr372976058729760647mer-m87297603872976065150-28.46
ADediting_1094570chr3_72976074_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-1228-3pchr372976072729760787mer-m87297606272976079147-20.37
ADediting_1094571chr3_72976089_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-1268achr372976085729760917mer-m87297607572976092162-31.18
ADediting_1094571chr3_72976089_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-1268bchr372976085729760917mer-m87297607372976092162-31.26
ADediting_1094572chr3_72976097_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-34a-3pchr372976093729760997mer-m87297607872976100143-9.59
ADediting_1094576chr3_72976167_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-3622a-3pchr372976163729761708mer-1a7297614972976170144-14.13
ADediting_1094576chr3_72976167_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-3622b-3pchr372976163729761708mer-1a7297615072976170153-18.18
ADediting_1094576chr3_72976167_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-544bchr372976161729761677mer-m87297614872976168153-18.14
ADediting_1094576chr3_72976167_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-7162-3pchr372976160729761667mer-m87297614872976167144-17.38
ADediting_1094577chr3_72976184_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-6089chr372976182729761887mer-m87297616772976189168-39.4
ADediting_1094578chr3_72976194_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-3189-3pchr372976188729761947mer-m87297617672976195149-25.49
ADediting_1094578chr3_72976194_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-6813-3pchr372976189729761957mer-m87297617672976196140-11.59
ADediting_1094579chr3_72976206_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-106a-3pchr372976202729762087mer-1a7297618772976208141-16.54
ADediting_1094580chr3_72976209_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-1228-3pchr372976207729762148mer-1a7297619772976214147-21.88

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1094560chr3_72975963_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-5586-3pchr372975960729759667mer-m87297594672975967152-18.75
ADediting_1094560chr3_72975963_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-759chr372975961729759677mer-m87297594772975968140-14.95
ADediting_1094562chr3_72975983_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-20a-3pchr372975981729759877mer-m87297596972975988149-15.86
ADediting_1094563chr3_72975993_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-4722-3pchr372975988729759958mer-1a7297597072975995148-21.3
ADediting_1094563chr3_72975993_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-6727-3pchr372975988729759958mer-1a7297597672975995148-18.34
ADediting_1094564chr3_72976018_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-12114chr372976014729760207mer-m87297599972976021151-22.82
ADediting_1094564chr3_72976018_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-3689dchr372976016729760227mer-m87297600172976023151-16.24
ADediting_1094564chr3_72976018_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-6079chr372976011729760177mer-m87297599572976018145-16.7
ADediting_1094564chr3_72976018_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-6134chr372976015729760217mer-m87297600572976022155-22.32
ADediting_1094565chr3_72976032_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-3614-5pchr372976029729760357mer-1a7297601372976035145-19.85
ADediting_1094566chr3_72976042_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-580-3pchr372976035729760417mer-m87297601972976042155-18.24
ADediting_1094567chr3_72976049_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-3929chr372976046729760527mer-m87297603172976053153-23.19
ADediting_1094567chr3_72976049_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-4478chr372976046729760527mer-m87297603572976053153-25.39
ADediting_1094567chr3_72976049_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-4649-3pchr372976043729760497mer-m87297603072976050147-14.24
ADediting_1094567chr3_72976049_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-6884-5pchr372976047729760537mer-m87297603172976054153-19.75
ADediting_1094567chr3_72976049_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-7160-5pchr372976044729760507mer-m87297603172976051146-16.61
ADediting_1094568chr3_72976061_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-5690chr372976058729760647mer-m87297604572976065145-16.35
ADediting_1094570chr3_72976074_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-216b-3pchr372976072729760787mer-m87297605472976079144-18.07
ADediting_1094570chr3_72976074_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-6500-3pchr372976070729760767mer-m87297605772976077140-14.85
ADediting_1094571chr3_72976089_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-4455chr372976085729760917mer-m87297607772976092146-16.9
ADediting_1094574chr3_72976115_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-593-3pchr372976114729761207mer-1a7297610272976120140-19.02
ADediting_1094576chr3_72976167_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-3614-5pchr372976164729761707mer-1a7297614772976170140-16.78
ADediting_1094577chr3_72976184_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-4478chr372976181729761877mer-m87297617372976188149-22.23
ADediting_1094577chr3_72976184_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-4649-3pchr372976178729761847mer-m87297616572976185147-16.14
ADediting_1094577chr3_72976184_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-485-5pchr372976182729761887mer-m87297616772976189145-15.4
ADediting_1094577chr3_72976184_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-7160-5pchr372976179729761857mer-m87297616872976186150-20.62
ADediting_1094580chr3_72976209_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-216b-3pchr372976207729762148mer-1a7297618972976214144-14.9
ADediting_1094580chr3_72976209_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-6500-3pchr372976205729762117mer-m87297619272976212140-14.27

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_843620chr2_207754818_+ENSG00000172986.13ENST00000389617.9GXYLT2-201hsa-miR-4775chr372976886729768938mer-1a7297686772976893151-9.92

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for GXYLT2

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000389617.9protein_codingSoverviewSoverview

check button RNA A-to-I editing in miRNA.
ADeditom_IDENSTmir_IDEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in mRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
ADediting_1094560ENST00000389617.9chr3_72975963_+2324-1048.20-1048.60-1080.30
ADediting_1094561ENST00000389617.9chr3_72975980_+2341-1054.50-1048.60-1080.30
ADediting_1094562ENST00000389617.9chr3_72975983_+2344-1049.50-1048.60-1080.30
ADediting_1094563ENST00000389617.9chr3_72975993_+2354-1050.50-1048.60-1080.30
ADediting_1094564ENST00000389617.9chr3_72976018_+2379-1048.60-1048.60-1080.30
ADediting_1094565ENST00000389617.9chr3_72976032_+2393-1051.00-1048.60-1080.30
ADediting_1094566ENST00000389617.9chr3_72976042_+2403-1048.20-1048.60-1080.30
ADediting_1094567ENST00000389617.9chr3_72976049_+2410-1047.90-1048.60-1080.30
ADediting_1094568ENST00000389617.9chr3_72976061_+2422-1053.60-1048.60-1080.30
ADediting_1094569ENST00000389617.9chr3_72976071_+2432-1048.60-1048.60-1080.30
ADediting_1094570ENST00000389617.9chr3_72976074_+2435-1051.90-1048.60-1080.30
ADediting_1094571ENST00000389617.9chr3_72976089_+2450-1048.20-1048.60-1080.30
ADediting_1094572ENST00000389617.9chr3_72976097_+2458-1048.60-1048.60-1080.30
ADediting_1094573ENST00000389617.9chr3_72976112_+2473-1055.20-1048.60-1080.30
ADediting_1094574ENST00000389617.9chr3_72976115_+2476-1048.30-1048.60-1080.30
ADediting_1094575ENST00000389617.9chr3_72976132_+2493-1050.20-1048.60-1080.30
ADediting_1094576ENST00000389617.9chr3_72976167_+2528-1051.50-1048.60-1080.30
ADediting_1094577ENST00000389617.9chr3_72976184_+2545-1049.60-1048.60-1080.30
ADediting_1094578ENST00000389617.9chr3_72976194_+2555-1048.60-1048.60-1080.30
ADediting_1094579ENST00000389617.9chr3_72976206_+2567-1049.00-1048.60-1080.30
ADediting_1094580ENST00000389617.9chr3_72976209_+2570-1048.60-1048.60-1080.30

check button RNA A-to-I editing in lncRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for GXYLT2

check button Correlation between ADAR gene expression and RNA editing frequency
TissueADeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
DLPFCADediting_1094577chr3_72976184_+0.7166201399215620.02069725797544930.307763720276143-0.05811368010802827.18922230558502e-080.300059724218826
DLPFCADediting_1094623chr3_72979690_+0.005487048295646490.1573723464789920.1391136753689430.08419811915428581.40052486005308e-090.335273913784244

check button Correlation between ADAR gene expression and this gene's expression
TissueADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
DLPFC9.62997767621481e-180.4613247852041689.41683889891988e-050.2199635379988694.30783571347194e-270.560951696552416
AC9.78406916206413e-140.4478623187157062.71799691929193e-090.3649456314361745.83890820801593e-140.451499391498042
PCC3.5411587019151e-090.4108988728836522.04763210806998e-060.335776916220553.5931078205402e-050.294279340362103
TCX4.16004492228384e-130.5475101031862990.2396697367612030.09658805877174846.5922021955937e-150.580862571418624
FP3.72926860038483e-100.4476503393280050.03438704752765830.1586756307948851.54172078315926e-090.433216909331359
IFG0.0005726088665840690.6398373052677496.74302962844327e-050.7111779374955770.05348634781935760.390688352776872
PG1.48130259659296e-270.6893167264611097.69800258247295e-110.4538837314622110.009171926448978180.190580723964963
STG2.58309481715401e-070.5271461072712230.07571968619148770.1948438821082090.006179650177416790.296445411835274

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Relation with AD stages for GXYLT2

check button Correlation between AD stages and RNA editing frequency
TissueADeditomIDpositionP-valCoeff.

check button Correlation between AD stages and this gene's expression
TissueP-valCoeff.
TCX1.78678574638909e-060.444731834739621

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RelatedDrugs for GXYLT2

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for GXYLT2

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource