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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for TAF13 |
 Gene summary |
| Gene information | Gene symbol | TAF13 | Gene ID | 6884 |
| Gene name | TATA-box binding protein associated factor 13 | |
| Synonyms | MRT60|TAF(II)18|TAF2K|TAFII-18|TAFII18 | |
| Cytomap | 1p13.3 | |
| Type of gene | protein-coding | |
| Description | transcription initiation factor TFIID subunit 13TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDaTATA box binding protein (TBP)-associated factor, RNA polymerase II, K, 18kDtranscription initiation factor TFIID 18 kD subu | |
| Modification date | 20200313 | |
| UniProtAcc | Q15543, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
Top |
RNA A-to-I events for TAF13 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA editing frequencies across three data sets. |
 |
| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA A-to-I editing events in AD. |
| ADediting_4354(109063011, -), ADediting_4355(109063012, -), ADediting_4356(109063036, -), ADediting_4357(109063040, -), ADediting_4358(109063042, -), ADediting_4359(109063067, -), ADediting_4360(109063072, -), ADediting_4361(109063074, -), ADediting_4362(109063079, -), ADediting_4363(109063083, -), ADediting_4364(109063096, -), ADediting_4365(109063104, -), ADediting_4366(109063105, -), ADediting_4367(109063135, -), ADediting_4368(109063139, -), ADediting_4369(109063145, -), ADediting_4370(109063171, -), ADediting_4371(109063174, -), ADediting_4372(109063177, -), ADediting_4373(109063178, -), ADediting_4374(109063181, -), ADediting_4375(109063184, -), ADediting_4376(109063224, -), ADediting_4377(109063278, -), ADediting_4378(109063287, -), ADediting_4379(109063514, -), ADediting_4380(109063518, -), ADediting_4381(109063527, -), ADediting_4382(109063531, -), ADediting_4383(109063534, -), ADediting_4384(109063538, -), ADediting_4385(109063539, -), ADediting_4386(109063547, -), ADediting_4387(109063550, -), ADediting_4388(109063551, -), ADediting_4389(109063553, -), ADediting_4390(109063557, -), ADediting_4391(109063570, -), ADediting_4392(109063574, -), ADediting_4393(109063579, -), ADediting_4394(109063580, -), ADediting_4395(109063598, -), ADediting_4396(109063606, -), ADediting_4397(109063609, -), ADediting_4398(109063610, -), ADediting_4399(109063611, -), ADediting_4400(109063612, -), ADediting_4401(109063614, -), ADediting_4402(109063617, -), ADediting_4403(109063618, -), ADediting_4404(109063619, -), ADediting_4405(109063620, -), ADediting_4406(109063621, -), ADediting_4407(109063637, -), ADediting_4408(109063638, -), ADediting_4409(109063645, -), ADediting_4410(109063646, -), ADediting_4411(109063655, -), ADediting_4412(109063669, -), ADediting_4413(109063684, -), ADediting_4414(109063698, -), ADediting_4415(109063714, -), ADediting_4416(109063715, -), ADediting_4417(109063721, -), ADediting_4418(109063723, -), ADediting_4419(109063892, -), ADediting_4420(109063901, -), ADediting_4421(109063913, -), ADediting_4422(109063914, -), ADediting_4423(109063915, -), ADediting_4424(109063932, -), ADediting_4425(109063964, -), ADediting_4426(109063968, -), ADediting_4427(109063973, -), ADediting_4428(109063976, -), ADediting_4429(109063990, -), ADediting_4430(109063992, -), ADediting_4431(109063993, -), ADediting_4432(109063999, -), ADediting_4433(109064008, -), ADediting_4434(109064009, -), ADediting_4435(109064019, -), ADediting_4436(109064033, -), ADediting_4437(109064035, -), ADediting_4438(109064046, -), ADediting_4439(109064058, -), ADediting_4440(109064071, -), ADediting_4441(109064075, -), ADediting_4442(109064076, -), ADediting_4443(109064089, -), ADediting_4444(109064096, -), ADediting_4445(109064101, -), ADediting_4446(109064111, -), ADediting_4447(109064140, -), ADediting_4448(109064143, -), ADediting_4449(109066848, -), ADediting_4450(109066858, -), ADediting_4451(109067346, -), ADediting_4452(109067430, -), ADediting_4453(109067510, -), ADediting_4454(109067523, -), ADediting_4455(109067528, -), ADediting_4456(109067588, -), ADediting_4457(109068212, -), ADediting_4458(109068252, -), ADediting_4459(109068286, -), ADediting_4460(109068334, -), ADediting_4461(109068341, -), ADediting_4462(109068355, -), ADediting_4463(109068356, -), ADediting_4464(109068772, -), ADediting_4465(109068799, -), ADediting_4466(109068819, -), ADediting_4467(109068836, -), ADediting_4468(109068880, -), ADediting_4469(109068902, -), ADediting_4470(109068950, -), ADediting_4471(109070279, -), ADediting_4472(109070281, -), ADediting_4473(109070304, -), ADediting_4474(109070330, -), ADediting_4475(109070357, -), ADediting_4476(109070383, -), ADediting_4477(109070398, -), ADediting_4478(109070446, -), ADediting_4479(109070492, -), ADediting_4480(109070612, -), ADediting_4481(109070613, -), ADediting_4482(109071046, -), ADediting_4483(109071052, -), ADediting_4484(109071053, -), ADediting_4485(109071086, -), ADediting_4486(109071094, -), ADediting_4487(109071117, -), ADediting_4488(109071182, -), ADediting_4489(109071184, -), ADediting_4490(109071196, -), ADediting_4491(109071197, -), ADediting_4492(109071198, -), ADediting_4493(109071253, -), ADediting_4494(109071695, -), ADediting_4495(109071720, -), ADediting_4496(109071890, -), ADediting_4497(109071895, -), ADediting_4498(109071905, -), ADediting_4499(109071913, -), ADediting_4500(109072583, -), ADediting_4501(109072609, -), ADediting_4502(109072644, -), ADediting_4503(109072696, -), ADediting_4504(109072717, -), ADediting_4505(109072718, -), ADediting_4506(109073005, -), ADediting_4507(109073346, -), ADediting_4508(109073372, -), ADediting_1513720(109063709, -), ADediting_1595957(109063507, -), ADediting_1595958(109063660, -), ADediting_1595959(109063674, -), |
Top |
RNA editing positional annotations for TAF13 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_4354 | chr1_109063011_- | UTR3 |
| ADediting_4355 | chr1_109063012_- | UTR3 |
| ADediting_4356 | chr1_109063036_- | UTR3 |
| ADediting_4357 | chr1_109063040_- | UTR3 |
| ADediting_4358 | chr1_109063042_- | UTR3 |
| ADediting_4359 | chr1_109063067_- | UTR3 |
| ADediting_4360 | chr1_109063072_- | UTR3 |
| ADediting_4361 | chr1_109063074_- | splicing |
| ADediting_4362 | chr1_109063079_- | intronic |
| ADediting_4363 | chr1_109063083_- | intronic |
| ADediting_4364 | chr1_109063096_- | intronic |
| ADediting_4365 | chr1_109063104_- | intronic |
| ADediting_4366 | chr1_109063105_- | intronic |
| ADediting_4367 | chr1_109063135_- | intronic |
| ADediting_4368 | chr1_109063139_- | intronic |
| ADediting_4369 | chr1_109063145_- | intronic |
| ADediting_4370 | chr1_109063171_- | intronic |
| ADediting_4371 | chr1_109063174_- | intronic |
| ADediting_4372 | chr1_109063177_- | intronic |
| ADediting_4373 | chr1_109063178_- | intronic |
| ADediting_4374 | chr1_109063181_- | intronic |
| ADediting_4375 | chr1_109063184_- | intronic |
| ADediting_4376 | chr1_109063224_- | intronic |
| ADediting_4377 | chr1_109063278_- | intronic |
| ADediting_4378 | chr1_109063287_- | intronic |
| ADediting_4379 | chr1_109063514_- | intronic |
| ADediting_4380 | chr1_109063518_- | intronic |
| ADediting_4381 | chr1_109063527_- | intronic |
| ADediting_4382 | chr1_109063531_- | intronic |
| ADediting_4383 | chr1_109063534_- | intronic |
| ADediting_4384 | chr1_109063538_- | intronic |
| ADediting_4385 | chr1_109063539_- | intronic |
| ADediting_4386 | chr1_109063547_- | intronic |
| ADediting_4387 | chr1_109063550_- | intronic |
| ADediting_4388 | chr1_109063551_- | intronic |
| ADediting_4389 | chr1_109063553_- | intronic |
| ADediting_4390 | chr1_109063557_- | intronic |
| ADediting_4391 | chr1_109063570_- | intronic |
| ADediting_4392 | chr1_109063574_- | intronic |
| ADediting_4393 | chr1_109063579_- | intronic |
| ADediting_4394 | chr1_109063580_- | intronic |
| ADediting_4395 | chr1_109063598_- | intronic |
| ADediting_4396 | chr1_109063606_- | intronic |
| ADediting_4397 | chr1_109063609_- | intronic |
| ADediting_4398 | chr1_109063610_- | intronic |
| ADediting_4399 | chr1_109063611_- | intronic |
| ADediting_4400 | chr1_109063612_- | intronic |
| ADediting_4401 | chr1_109063614_- | intronic |
| ADediting_4402 | chr1_109063617_- | intronic |
| ADediting_4403 | chr1_109063618_- | intronic |
| ADediting_4404 | chr1_109063619_- | intronic |
| ADediting_4405 | chr1_109063620_- | intronic |
| ADediting_4406 | chr1_109063621_- | intronic |
| ADediting_4407 | chr1_109063637_- | intronic |
| ADediting_4408 | chr1_109063638_- | intronic |
| ADediting_4409 | chr1_109063645_- | intronic |
| ADediting_4410 | chr1_109063646_- | intronic |
| ADediting_4411 | chr1_109063655_- | intronic |
| ADediting_4412 | chr1_109063669_- | intronic |
| ADediting_4413 | chr1_109063684_- | intronic |
| ADediting_4414 | chr1_109063698_- | intronic |
| ADediting_4415 | chr1_109063714_- | intronic |
| ADediting_4416 | chr1_109063715_- | intronic |
| ADediting_4417 | chr1_109063721_- | intronic |
| ADediting_4418 | chr1_109063723_- | intronic |
| ADediting_4419 | chr1_109063892_- | intronic |
| ADediting_4420 | chr1_109063901_- | intronic |
| ADediting_4421 | chr1_109063913_- | intronic |
| ADediting_4422 | chr1_109063914_- | intronic |
| ADediting_4423 | chr1_109063915_- | intronic |
| ADediting_4424 | chr1_109063932_- | intronic |
| ADediting_4425 | chr1_109063964_- | intronic |
| ADediting_4426 | chr1_109063968_- | intronic |
| ADediting_4427 | chr1_109063973_- | intronic |
| ADediting_4428 | chr1_109063976_- | intronic |
| ADediting_4429 | chr1_109063990_- | intronic |
| ADediting_4430 | chr1_109063992_- | intronic |
| ADediting_4431 | chr1_109063993_- | intronic |
| ADediting_4432 | chr1_109063999_- | intronic |
| ADediting_4433 | chr1_109064008_- | intronic |
| ADediting_4434 | chr1_109064009_- | intronic |
| ADediting_4435 | chr1_109064019_- | intronic |
| ADediting_4436 | chr1_109064033_- | intronic |
| ADediting_4437 | chr1_109064035_- | intronic |
| ADediting_4438 | chr1_109064046_- | intronic |
| ADediting_4439 | chr1_109064058_- | intronic |
| ADediting_4440 | chr1_109064071_- | intronic |
| ADediting_4441 | chr1_109064075_- | intronic |
| ADediting_4442 | chr1_109064076_- | intronic |
| ADediting_4443 | chr1_109064089_- | intronic |
| ADediting_4444 | chr1_109064096_- | intronic |
| ADediting_4445 | chr1_109064101_- | intronic |
| ADediting_4446 | chr1_109064111_- | intronic |
| ADediting_4447 | chr1_109064140_- | UTR3 |
| ADediting_4448 | chr1_109064143_- | UTR3 |
| ADediting_4449 | chr1_109066848_- | intronic |
| ADediting_4450 | chr1_109066858_- | intronic |
| ADediting_4451 | chr1_109067346_- | intronic |
| ADediting_4452 | chr1_109067430_- | intronic |
| ADediting_4453 | chr1_109067510_- | intronic |
| ADediting_4454 | chr1_109067523_- | intronic |
| ADediting_4455 | chr1_109067528_- | intronic |
| ADediting_4456 | chr1_109067588_- | intronic |
| ADediting_4457 | chr1_109068212_- | intronic |
| ADediting_4458 | chr1_109068252_- | intronic |
| ADediting_4459 | chr1_109068286_- | intronic |
| ADediting_4460 | chr1_109068334_- | intronic |
| ADediting_4461 | chr1_109068341_- | intronic |
| ADediting_4462 | chr1_109068355_- | intronic |
| ADediting_4463 | chr1_109068356_- | intronic |
| ADediting_4464 | chr1_109068772_- | intronic |
| ADediting_4465 | chr1_109068799_- | intronic |
| ADediting_4466 | chr1_109068819_- | intronic |
| ADediting_4467 | chr1_109068836_- | intronic |
| ADediting_4468 | chr1_109068880_- | intronic |
| ADediting_4469 | chr1_109068902_- | intronic |
| ADediting_4470 | chr1_109068950_- | intronic |
| ADediting_4471 | chr1_109070279_- | intronic |
| ADediting_4472 | chr1_109070281_- | intronic |
| ADediting_4473 | chr1_109070304_- | intronic |
| ADediting_4474 | chr1_109070330_- | intronic |
| ADediting_4475 | chr1_109070357_- | intronic |
| ADediting_4476 | chr1_109070383_- | intronic |
| ADediting_4477 | chr1_109070398_- | intronic |
| ADediting_4478 | chr1_109070446_- | intronic |
| ADediting_4479 | chr1_109070492_- | intronic |
| ADediting_4480 | chr1_109070612_- | intronic |
| ADediting_4481 | chr1_109070613_- | intronic |
| ADediting_4482 | chr1_109071046_- | intronic |
| ADediting_4483 | chr1_109071052_- | intronic |
| ADediting_4484 | chr1_109071053_- | intronic |
| ADediting_4485 | chr1_109071086_- | intronic |
| ADediting_4486 | chr1_109071094_- | intronic |
| ADediting_4487 | chr1_109071117_- | intronic |
| ADediting_4488 | chr1_109071182_- | intronic |
| ADediting_4489 | chr1_109071184_- | intronic |
| ADediting_4490 | chr1_109071196_- | intronic |
| ADediting_4491 | chr1_109071197_- | intronic |
| ADediting_4492 | chr1_109071198_- | intronic |
| ADediting_4493 | chr1_109071253_- | intronic |
| ADediting_4494 | chr1_109071695_- | intronic |
| ADediting_4495 | chr1_109071720_- | intronic |
| ADediting_4496 | chr1_109071890_- | intronic |
| ADediting_4497 | chr1_109071895_- | intronic |
| ADediting_4498 | chr1_109071905_- | intronic |
| ADediting_4499 | chr1_109071913_- | intronic |
| ADediting_4500 | chr1_109072583_- | intronic |
| ADediting_4501 | chr1_109072609_- | intronic |
| ADediting_4502 | chr1_109072644_- | intronic |
| ADediting_4503 | chr1_109072696_- | intronic |
| ADediting_4504 | chr1_109072717_- | intronic |
| ADediting_4505 | chr1_109072718_- | intronic |
| ADediting_4506 | chr1_109073005_- | intronic |
| ADediting_4507 | chr1_109073346_- | intronic |
| ADediting_4508 | chr1_109073372_- | intronic |
| ADediting_1513720 | chr1_109063709_- | intronic |
| ADediting_1595957 | chr1_109063507_- | intronic |
| ADediting_1595958 | chr1_109063660_- | intronic |
| ADediting_1595959 | chr1_109063674_- | intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_4354 | chr1_109063011_- | SINE | Alu | Name=AluY |
| ADediting_4355 | chr1_109063012_- | SINE | Alu | Name=AluY |
| ADediting_4356 | chr1_109063036_- | SINE | Alu | Name=AluY |
| ADediting_4357 | chr1_109063040_- | SINE | Alu | Name=AluY |
| ADediting_4358 | chr1_109063042_- | SINE | Alu | Name=AluY |
| ADediting_4359 | chr1_109063067_- | SINE | Alu | Name=AluY |
| ADediting_4360 | chr1_109063072_- | SINE | Alu | Name=AluY |
| ADediting_4361 | chr1_109063074_- | SINE | Alu | Name=AluY |
| ADediting_4362 | chr1_109063079_- | SINE | Alu | Name=AluY |
| ADediting_4363 | chr1_109063083_- | SINE | Alu | Name=AluY |
| ADediting_4364 | chr1_109063096_- | SINE | Alu | Name=AluY |
| ADediting_4365 | chr1_109063104_- | SINE | Alu | Name=AluY |
| ADediting_4366 | chr1_109063105_- | SINE | Alu | Name=AluY |
| ADediting_4367 | chr1_109063135_- | SINE | Alu | Name=AluY |
| ADediting_4368 | chr1_109063139_- | SINE | Alu | Name=AluY |
| ADediting_4369 | chr1_109063145_- | SINE | Alu | Name=AluY |
| ADediting_4370 | chr1_109063171_- | SINE | Alu | Name=AluY |
| ADediting_4371 | chr1_109063174_- | SINE | Alu | Name=AluY |
| ADediting_4372 | chr1_109063177_- | SINE | Alu | Name=AluY |
| ADediting_4373 | chr1_109063178_- | SINE | Alu | Name=AluY |
| ADediting_4374 | chr1_109063181_- | SINE | Alu | Name=AluY |
| ADediting_4375 | chr1_109063184_- | SINE | Alu | Name=AluY |
| ADediting_4376 | chr1_109063224_- | SINE | Alu | Name=AluY |
| ADediting_4377 | chr1_109063278_- | SINE | Alu | Name=AluY |
| ADediting_4378 | chr1_109063287_- | SINE | Alu | Name=AluY |
| ADediting_4379 | chr1_109063514_- | SINE | Alu | Name=AluSz6 |
| ADediting_4380 | chr1_109063518_- | SINE | Alu | Name=AluSz6 |
| ADediting_4381 | chr1_109063527_- | SINE | Alu | Name=AluSz6 |
| ADediting_4382 | chr1_109063531_- | SINE | Alu | Name=AluSz6 |
| ADediting_4383 | chr1_109063534_- | SINE | Alu | Name=AluSz6 |
| ADediting_4384 | chr1_109063538_- | SINE | Alu | Name=AluSz6 |
| ADediting_4385 | chr1_109063539_- | SINE | Alu | Name=AluSz6 |
| ADediting_4386 | chr1_109063547_- | SINE | Alu | Name=AluSz6 |
| ADediting_4387 | chr1_109063550_- | SINE | Alu | Name=AluSz6 |
| ADediting_4388 | chr1_109063551_- | SINE | Alu | Name=AluSz6 |
| ADediting_4389 | chr1_109063553_- | SINE | Alu | Name=AluSz6 |
| ADediting_4390 | chr1_109063557_- | SINE | Alu | Name=AluSz6 |
| ADediting_4391 | chr1_109063570_- | SINE | Alu | Name=AluSz6 |
| ADediting_4392 | chr1_109063574_- | SINE | Alu | Name=AluSz6 |
| ADediting_4393 | chr1_109063579_- | SINE | Alu | Name=AluSz6 |
| ADediting_4394 | chr1_109063580_- | SINE | Alu | Name=AluSz6 |
| ADediting_4395 | chr1_109063598_- | SINE | Alu | Name=AluSz6 |
| ADediting_4396 | chr1_109063606_- | SINE | Alu | Name=AluSz6 |
| ADediting_4397 | chr1_109063609_- | SINE | Alu | Name=AluSz6 |
| ADediting_4398 | chr1_109063610_- | SINE | Alu | Name=AluSz6 |
| ADediting_4399 | chr1_109063611_- | SINE | Alu | Name=AluSz6 |
| ADediting_4400 | chr1_109063612_- | SINE | Alu | Name=AluSz6 |
| ADediting_4401 | chr1_109063614_- | SINE | Alu | Name=AluSz6 |
| ADediting_4402 | chr1_109063617_- | SINE | Alu | Name=AluSz6 |
| ADediting_4403 | chr1_109063618_- | SINE | Alu | Name=AluSz6 |
| ADediting_4404 | chr1_109063619_- | SINE | Alu | Name=AluSz6 |
| ADediting_4405 | chr1_109063620_- | SINE | Alu | Name=AluSz6 |
| ADediting_4406 | chr1_109063621_- | SINE | Alu | Name=AluSz6 |
| ADediting_4407 | chr1_109063637_- | SINE | Alu | Name=AluSz6 |
| ADediting_4408 | chr1_109063638_- | SINE | Alu | Name=AluSz6 |
| ADediting_4409 | chr1_109063645_- | SINE | Alu | Name=AluSz6 |
| ADediting_4410 | chr1_109063646_- | SINE | Alu | Name=AluSz6 |
| ADediting_4411 | chr1_109063655_- | SINE | Alu | Name=AluSz6 |
| ADediting_4412 | chr1_109063669_- | SINE | Alu | Name=AluSz6 |
| ADediting_4413 | chr1_109063684_- | SINE | Alu | Name=AluSz6 |
| ADediting_4414 | chr1_109063698_- | SINE | Alu | Name=AluSz6 |
| ADediting_4415 | chr1_109063714_- | SINE | Alu | Name=AluSz6 |
| ADediting_4416 | chr1_109063715_- | SINE | Alu | Name=AluSz6 |
| ADediting_4417 | chr1_109063721_- | SINE | Alu | Name=AluSz6 |
| ADediting_4418 | chr1_109063723_- | SINE | Alu | Name=AluSz6 |
| ADediting_4419 | chr1_109063892_- | SINE | Alu | Name=AluSc |
| ADediting_4420 | chr1_109063901_- | SINE | Alu | Name=AluSc |
| ADediting_4421 | chr1_109063913_- | SINE | Alu | Name=AluSc |
| ADediting_4422 | chr1_109063914_- | SINE | Alu | Name=AluSc |
| ADediting_4423 | chr1_109063915_- | SINE | Alu | Name=AluSc |
| ADediting_4424 | chr1_109063932_- | SINE | Alu | Name=AluSc |
| ADediting_4425 | chr1_109063964_- | SINE | Alu | Name=AluSc |
| ADediting_4426 | chr1_109063968_- | SINE | Alu | Name=AluSc |
| ADediting_4427 | chr1_109063973_- | SINE | Alu | Name=AluSc |
| ADediting_4428 | chr1_109063976_- | SINE | Alu | Name=AluSc |
| ADediting_4429 | chr1_109063990_- | SINE | Alu | Name=AluSc |
| ADediting_4430 | chr1_109063992_- | SINE | Alu | Name=AluSc |
| ADediting_4431 | chr1_109063993_- | SINE | Alu | Name=AluSc |
| ADediting_4432 | chr1_109063999_- | SINE | Alu | Name=AluSc |
| ADediting_4433 | chr1_109064008_- | SINE | Alu | Name=AluSc |
| ADediting_4434 | chr1_109064009_- | SINE | Alu | Name=AluSc |
| ADediting_4435 | chr1_109064019_- | SINE | Alu | Name=AluSc |
| ADediting_4436 | chr1_109064033_- | SINE | Alu | Name=AluSc |
| ADediting_4437 | chr1_109064035_- | SINE | Alu | Name=AluSc |
| ADediting_4438 | chr1_109064046_- | SINE | Alu | Name=AluSc |
| ADediting_4439 | chr1_109064058_- | SINE | Alu | Name=AluSc |
| ADediting_4440 | chr1_109064071_- | SINE | Alu | Name=AluSc |
| ADediting_4441 | chr1_109064075_- | SINE | Alu | Name=AluSc |
| ADediting_4442 | chr1_109064076_- | SINE | Alu | Name=AluSc |
| ADediting_4443 | chr1_109064089_- | SINE | Alu | Name=AluSc |
| ADediting_4444 | chr1_109064096_- | SINE | Alu | Name=AluSc |
| ADediting_4445 | chr1_109064101_- | SINE | Alu | Name=AluSc |
| ADediting_4446 | chr1_109064111_- | SINE | Alu | Name=AluSc |
| ADediting_4447 | chr1_109064140_- | SINE | Alu | Name=AluSc |
| ADediting_4448 | chr1_109064143_- | SINE | Alu | Name=AluSc |
| ADediting_4449 | chr1_109066848_- | SINE | Alu | Name=AluY |
| ADediting_4450 | chr1_109066858_- | SINE | Alu | Name=AluY |
| ADediting_4451 | chr1_109067346_- | SINE | Alu | Name=AluSz6 |
| ADediting_4452 | chr1_109067430_- | SINE | Alu | Name=AluSz6 |
| ADediting_4453 | chr1_109067510_- | SINE | Alu | Name=AluSz6 |
| ADediting_4454 | chr1_109067523_- | SINE | Alu | Name=AluSz6 |
| ADediting_4455 | chr1_109067528_- | SINE | Alu | Name=AluSz6 |
| ADediting_4456 | chr1_109067588_- | SINE | Alu | Name=AluSz6 |
| ADediting_4457 | chr1_109068212_- | SINE | Alu | Name=AluSz6 |
| ADediting_4458 | chr1_109068252_- | SINE | Alu | Name=AluSz6 |
| ADediting_4459 | chr1_109068286_- | SINE | Alu | Name=AluSz6 |
| ADediting_4460 | chr1_109068334_- | SINE | Alu | Name=AluSz6 |
| ADediting_4461 | chr1_109068341_- | SINE | Alu | Name=AluSz6 |
| ADediting_4462 | chr1_109068355_- | SINE | Alu | Name=AluSz6 |
| ADediting_4463 | chr1_109068356_- | SINE | Alu | Name=AluSz6 |
| ADediting_4464 | chr1_109068772_- | SINE | Alu | Name=AluSx |
| ADediting_4465 | chr1_109068799_- | SINE | Alu | Name=AluSx |
| ADediting_4466 | chr1_109068819_- | SINE | Alu | Name=AluSx |
| ADediting_4467 | chr1_109068836_- | SINE | Alu | Name=AluSx |
| ADediting_4468 | chr1_109068880_- | SINE | Alu | Name=AluSx |
| ADediting_4469 | chr1_109068902_- | SINE | Alu | Name=AluSx |
| ADediting_4470 | chr1_109068950_- | SINE | Alu | Name=AluSx |
| ADediting_4471 | chr1_109070279_- | SINE | Alu | Name=AluSc |
| ADediting_4472 | chr1_109070281_- | SINE | Alu | Name=AluSc |
| ADediting_4473 | chr1_109070304_- | SINE | Alu | Name=AluSc |
| ADediting_4474 | chr1_109070330_- | SINE | Alu | Name=AluSc |
| ADediting_4475 | chr1_109070357_- | SINE | Alu | Name=AluSc |
| ADediting_4476 | chr1_109070383_- | SINE | Alu | Name=AluSc |
| ADediting_4477 | chr1_109070398_- | SINE | Alu | Name=AluSc |
| ADediting_4478 | chr1_109070446_- | SINE | Alu | Name=AluSc |
| ADediting_4479 | chr1_109070492_- | SINE | Alu | Name=AluSc |
| ADediting_4480 | chr1_109070612_- | SINE | Alu | Name=AluSz |
| ADediting_4481 | chr1_109070613_- | SINE | Alu | Name=AluSz |
| ADediting_4482 | chr1_109071046_- | SINE | Alu | Name=AluJo |
| ADediting_4483 | chr1_109071052_- | SINE | Alu | Name=AluJo |
| ADediting_4484 | chr1_109071053_- | SINE | Alu | Name=AluJo |
| ADediting_4485 | chr1_109071086_- | SINE | Alu | Name=AluJo |
| ADediting_4486 | chr1_109071094_- | SINE | Alu | Name=AluJo |
| ADediting_4487 | chr1_109071117_- | SINE | Alu | Name=AluJo |
| ADediting_4488 | chr1_109071182_- | SINE | Alu | Name=AluSx |
| ADediting_4489 | chr1_109071184_- | SINE | Alu | Name=AluSx |
| ADediting_4490 | chr1_109071196_- | SINE | Alu | Name=AluSx |
| ADediting_4491 | chr1_109071197_- | SINE | Alu | Name=AluSx |
| ADediting_4492 | chr1_109071198_- | SINE | Alu | Name=AluSx |
| ADediting_4493 | chr1_109071253_- | SINE | Alu | Name=AluSx |
| ADediting_4494 | chr1_109071695_- | SINE | Alu | Name=AluSc |
| ADediting_4495 | chr1_109071720_- | SINE | Alu | Name=AluSc |
| ADediting_4496 | chr1_109071890_- | SINE | Alu | Name=AluSc |
| ADediting_4497 | chr1_109071895_- | SINE | Alu | Name=AluSc |
| ADediting_4498 | chr1_109071905_- | SINE | Alu | Name=AluSc |
| ADediting_4499 | chr1_109071913_- | SINE | Alu | Name=AluSc |
| ADediting_4500 | chr1_109072583_- | SINE | Alu | Name=AluJb |
| ADediting_4501 | chr1_109072609_- | SINE | Alu | Name=AluJb |
| ADediting_4502 | chr1_109072644_- | SINE | Alu | Name=AluJb |
| ADediting_4503 | chr1_109072696_- | SINE | Alu | Name=AluJb |
| ADediting_4504 | chr1_109072717_- | SINE | Alu | Name=AluJb |
| ADediting_4505 | chr1_109072718_- | SINE | Alu | Name=AluJb |
| ADediting_4506 | chr1_109073005_- | SINE | Alu | Name=AluSz |
| ADediting_4507 | chr1_109073346_- | SINE | Alu | Name=AluY |
| ADediting_4508 | chr1_109073372_- | SINE | Alu | Name=AluY |
| ADediting_1513720 | chr1_109063709_- | SINE | Alu | Name=AluSz6 |
| ADediting_1595957 | chr1_109063507_- | SINE | Alu | Name=AluSz6 |
| ADediting_1595958 | chr1_109063660_- | SINE | Alu | Name=AluSz6 |
| ADediting_1595959 | chr1_109063674_- | SINE | Alu | Name=AluSz6 |
Top |
RNA A-to-I editing events in the alternative splicing sites for TAF13 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TAF13 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
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Protein coding region RNA A-to-I editings for TAF13 |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
Top |
The effects of the RNA editing to the miRNA binding sites for TAF13 |
| RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. |
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| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_4447 | chr1_109064140_- | ENSG00000197780.10 | ENST00000338366.6 | TAF13-201 | hsa-miR-921 | chr1 | 109064140 | 109064146 | 7mer-m8 | 109064140 | 109064163 | 146 | -13.78 |
| ADediting_4448 | chr1_109064143_- | ENSG00000197780.10 | ENST00000338366.6 | TAF13-201 | hsa-miR-921 | chr1 | 109064140 | 109064146 | 7mer-m8 | 109064140 | 109064163 | 146 | -13.78 |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_286380 | chr11_79422188_- | ENSG00000197780.10 | ENST00000338366.6 | TAF13-201 | hsa-miR-5579-3p | chr1 | 109064191 | 109064197 | 7mer-m8 | 109064190 | 109064212 | 150 | -12.07 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000197780.10 | ENST00000338366.6 | TAF13-201 | hsa-miR-4775 | chr1 | 109064498 | 109064504 | 7mer-m8 | 109064497 | 109064518 | 143 | -10.13 |
| Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for TAF13 |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000338366.6 | protein_coding |  |  |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_4447 | ENST00000338366.6 | chr1_109064140_- | 814 | -198.80 | -198.80 | -200.00 |
| ADediting_4448 | ENST00000338366.6 | chr1_109064143_- | 811 | -198.80 | -198.80 | -200.00 |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for TAF13 |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| TCX | ADediting_4383 | chr1_109063534_- | 0.0111196371378958 | 0.206785896844061 | 8.25031866579577e-07 | 0.389711160929751 | 2.03907309432583e-05 | -0.340281585038229 |
| CER | ADediting_4391 | chr1_109063570_- | 0.00985711052254153 | 0.210121466139559 | 2.95960932376002e-06 | 0.370993644943187 | 0.780097141386195 | 0.0229852375863915 |
| PCC | ADediting_4396 | chr1_109063606_- | 0.835269046018389 | -0.0151451922178959 | 0.237259984729755 | -0.0859223953319157 | 8.91585596509579e-07 | 0.346758477172873 |
| CER | ADediting_4413 | chr1_109063684_- | 0.00328706359723107 | 0.238532925868532 | 8.17795763938269e-07 | 0.389836305328494 | 0.406924938302501 | -0.0682051347646525 |
| TCX | ADediting_4413 | chr1_109063684_- | 1.05875869577413e-06 | 0.386146213208112 | 1.61359447554163e-15 | 0.591381800495408 | 6.02082196920542e-05 | -0.321526073042991 |
| DLPFC | ADediting_4424 | chr1_109063932_- | 3.05216154194934e-05 | 0.234452096325746 | 1.22851973696523e-08 | 0.316423755526306 | 0.00259441744216244 | 0.17051045235357 |
| DLPFC | ADediting_4429 | chr1_109063990_- | 0.000163780794705683 | 0.212484140734462 | 2.78570231265269e-08 | 0.308964994257546 | 0.00728413966051076 | 0.152142698344378 |
| DLPFC | ADediting_4430 | chr1_109063992_- | 1.55573278829739e-05 | 0.242697916912115 | 5.45548681753871e-09 | 0.323622459419205 | 0.00812207427656168 | 0.150090606000152 |
| TCX | ADediting_4443 | chr1_109064089_- | 1.94939555891459e-05 | 0.341034983126364 | 3.5115636185954e-10 | 0.483973797088136 | 0.121779222827621 | -0.126890725841362 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 9.67428663362498e-54 | 0.734234772300504 | 1.77032800418255e-46 | 0.697426832244263 | 0.246554478134849 | 0.0660079404930412 |
| AC | 8.84702612442157e-57 | 0.799310508711102 | 3.88469332703148e-35 | 0.678955633234857 | 4.16619435299224e-18 | 0.511986589923013 |
| PCC | 1.30796285497217e-28 | 0.692509190433968 | 1.45585038928983e-33 | 0.733800599834137 | 0.197703445482631 | 0.0936149434531059 |
| CER | 6.80583026967213e-16 | 0.59765034225952 | 2.91712226698698e-13 | 0.550516458814713 | 0.00635464090365385 | 0.221885275139778 |
| TCX | 1.13573617267957e-28 | 0.752833083588734 | 2.75978106268359e-12 | 0.530958048965701 | 0.163537223021644 | 0.11434333552525 |
| FP | 3.11488783514689e-10 | 0.449433708911335 | 1.86612331826359e-06 | 0.348519788501157 | 0.937373117694213 | 0.00593094832807 |
| IFG | 0.000738198911933812 | 0.629988927512146 | 0.060963268195281 | 0.38000895034621 | 0.35693022608223 | -0.192365492543274 |
| PG | 2.21246834605399e-43 | 0.803883955091882 | 5.04797891924254e-20 | 0.60591786706291 | 0.856416065435436 | -0.0133564826381015 |
| STG | 0.000395599159220986 | 0.377802499021528 | 1.38539012939126e-05 | 0.454802322842112 | 0.0359307715705855 | -0.229256178996627 |
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Relation with AD stages for TAF13 |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| TCX | ADediting_4416 | chr1_109063715_- | 0.000518853754658644 | 0.331464077128655 |
| IFG | ADediting_4381 | chr1_109063527_- | 0.00358037027207598 | 0.560289466395129 |
| IFG | ADediting_4437 | chr1_109064035_- | 0.0316747566579673 | -0.430552463203519 |
| IFG | ADediting_4447 | chr1_109064140_- | 0.0180614875643472 | 0.468888314332099 |
| STG | ADediting_4405 | chr1_109063620_- | 0.00455942590351631 | 0.306603027253865 |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
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RelatedDrugs for TAF13 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for TAF13 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
| TAF13 | C0431350 | Primary microcephaly | 1 | GENOMICS_ENGLAND |
| TAF13 | C3714756 | Intellectual Disability | 1 | GENOMICS_ENGLAND |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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