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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for SNRPD2 |
 Gene summary |
| Gene information | Gene symbol | SNRPD2 | Gene ID | 6633 |
| Gene name | small nuclear ribonucleoprotein D2 polypeptide | |
| Synonyms | SMD2|SNRPD1|Sm-D2 | |
| Cytomap | 19q13.32 | |
| Type of gene | protein-coding | |
| Description | small nuclear ribonucleoprotein Sm D2small nuclear ribonucleoprotein D2 polypeptide 16.5kDasnRNP core protein D2 | |
| Modification date | 20200322 | |
| UniProtAcc | ||
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
| SNRPD2 | GO:0000387 | spliceosomal snRNP assembly | 18984161 |
| SNRPD2 | GO:0000398 | mRNA splicing, via spliceosome | 28076346 |
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RNA A-to-I events for SNRPD2 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_763153(45688818, -), ADediting_763154(45688830, -), ADediting_763155(45688844, -), ADediting_763156(45688848, -), ADediting_763157(45688857, -), ADediting_763158(45688865, -), ADediting_763159(45688871, -), ADediting_763160(45688900, -), ADediting_763161(45688914, -), ADediting_763162(45688954, -), ADediting_763163(45688958, -), ADediting_763164(45688961, -), ADediting_763165(45689008, -), ADediting_763166(45689409, -), ADediting_763167(45689411, -), ADediting_763168(45689417, -), ADediting_763169(45689423, -), ADediting_763170(45689424, -), ADediting_763171(45689425, -), ADediting_763172(45689438, -), ADediting_763173(45689450, -), ADediting_763174(45689463, -), ADediting_763175(45689485, -), ADediting_763176(45689488, -), ADediting_763177(45689499, -), ADediting_763178(45689502, -), ADediting_763179(45689505, -), ADediting_763180(45689589, -), ADediting_763181(45689610, -), ADediting_763182(45689616, -), ADediting_763183(45689625, -), ADediting_763184(45689628, -), ADediting_763185(45689629, -), ADediting_763186(45689649, -), ADediting_763187(45689929, -), ADediting_763188(45689937, -), ADediting_763189(45689954, -), ADediting_763190(45689990, -), ADediting_763191(45689991, -), ADediting_763192(45690010, -), ADediting_763193(45690385, -), ADediting_763194(45690418, -), ADediting_763195(45690444, -), ADediting_763196(45690575, -), ADediting_763197(45690587, -), ADediting_763198(45690613, -), ADediting_763199(45690639, -), ADediting_763200(45690666, -), ADediting_763201(45690688, -), ADediting_763202(45690745, -), ADediting_763203(45690749, -), ADediting_763204(45690750, -), ADediting_763205(45690780, -), ADediting_763206(45690793, -), ADediting_763207(45691177, -), ADediting_763208(45691188, -), ADediting_763209(45691198, -), ADediting_763210(45691228, -), ADediting_763211(45691268, -), ADediting_763212(45691285, -), ADediting_763213(45691295, -), ADediting_763214(45691298, -), ADediting_763215(45691299, -), ADediting_763216(45691301, -), ADediting_763217(45691302, -), ADediting_763218(45691413, -), ADediting_763219(45691571, -), ADediting_763220(45691580, -), ADediting_763221(45691627, -), ADediting_763222(45691630, -), ADediting_763223(45691638, -), ADediting_1556779(45689706, -), ADediting_1556780(45690606, -), ADediting_1556781(45691165, -), |
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RNA editing positional annotations for SNRPD2 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_763153 | chr19_45688818_- | intronic |
| ADediting_763154 | chr19_45688830_- | intronic |
| ADediting_763155 | chr19_45688844_- | intronic |
| ADediting_763156 | chr19_45688848_- | intronic |
| ADediting_763157 | chr19_45688857_- | intronic |
| ADediting_763158 | chr19_45688865_- | intronic |
| ADediting_763159 | chr19_45688871_- | intronic |
| ADediting_763160 | chr19_45688900_- | intronic |
| ADediting_763161 | chr19_45688914_- | intronic |
| ADediting_763162 | chr19_45688954_- | intronic |
| ADediting_763163 | chr19_45688958_- | intronic |
| ADediting_763164 | chr19_45688961_- | intronic |
| ADediting_763165 | chr19_45689008_- | intronic |
| ADediting_763166 | chr19_45689409_- | intronic |
| ADediting_763167 | chr19_45689411_- | intronic |
| ADediting_763168 | chr19_45689417_- | intronic |
| ADediting_763169 | chr19_45689423_- | intronic |
| ADediting_763170 | chr19_45689424_- | intronic |
| ADediting_763171 | chr19_45689425_- | intronic |
| ADediting_763172 | chr19_45689438_- | intronic |
| ADediting_763173 | chr19_45689450_- | intronic |
| ADediting_763174 | chr19_45689463_- | intronic |
| ADediting_763175 | chr19_45689485_- | intronic |
| ADediting_763176 | chr19_45689488_- | intronic |
| ADediting_763177 | chr19_45689499_- | intronic |
| ADediting_763178 | chr19_45689502_- | intronic |
| ADediting_763179 | chr19_45689505_- | intronic |
| ADediting_763180 | chr19_45689589_- | intronic |
| ADediting_763181 | chr19_45689610_- | intronic |
| ADediting_763182 | chr19_45689616_- | intronic |
| ADediting_763183 | chr19_45689625_- | intronic |
| ADediting_763184 | chr19_45689628_- | intronic |
| ADediting_763185 | chr19_45689629_- | intronic |
| ADediting_763186 | chr19_45689649_- | intronic |
| ADediting_763187 | chr19_45689929_- | intronic |
| ADediting_763188 | chr19_45689937_- | intronic |
| ADediting_763189 | chr19_45689954_- | intronic |
| ADediting_763190 | chr19_45689990_- | intronic |
| ADediting_763191 | chr19_45689991_- | intronic |
| ADediting_763192 | chr19_45690010_- | intronic |
| ADediting_763193 | chr19_45690385_- | intronic |
| ADediting_763194 | chr19_45690418_- | intronic |
| ADediting_763195 | chr19_45690444_- | intronic |
| ADediting_763196 | chr19_45690575_- | UTR5 |
| ADediting_763197 | chr19_45690587_- | UTR5 |
| ADediting_763198 | chr19_45690613_- | UTR5 |
| ADediting_763199 | chr19_45690639_- | UTR5 |
| ADediting_763200 | chr19_45690666_- | UTR5 |
| ADediting_763201 | chr19_45690688_- | intronic |
| ADediting_763202 | chr19_45690745_- | intronic |
| ADediting_763203 | chr19_45690749_- | intronic |
| ADediting_763204 | chr19_45690750_- | intronic |
| ADediting_763205 | chr19_45690780_- | intronic |
| ADediting_763206 | chr19_45690793_- | intronic |
| ADediting_763207 | chr19_45691177_- | intronic |
| ADediting_763208 | chr19_45691188_- | intronic |
| ADediting_763209 | chr19_45691198_- | intronic |
| ADediting_763210 | chr19_45691228_- | intronic |
| ADediting_763211 | chr19_45691268_- | intronic |
| ADediting_763212 | chr19_45691285_- | intronic |
| ADediting_763213 | chr19_45691295_- | intronic |
| ADediting_763214 | chr19_45691298_- | intronic |
| ADediting_763215 | chr19_45691299_- | intronic |
| ADediting_763216 | chr19_45691301_- | intronic |
| ADediting_763217 | chr19_45691302_- | intronic |
| ADediting_763218 | chr19_45691413_- | UTR5 |
| ADediting_763219 | chr19_45691571_- | UTR5 |
| ADediting_763220 | chr19_45691580_- | UTR5 |
| ADediting_763221 | chr19_45691627_- | UTR5 |
| ADediting_763222 | chr19_45691630_- | UTR5 |
| ADediting_763223 | chr19_45691638_- | UTR5 |
| ADediting_1556779 | chr19_45689706_- | intronic |
| ADediting_1556780 | chr19_45690606_- | UTR5 |
| ADediting_1556781 | chr19_45691165_- | intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_763153 | chr19_45688818_- | SINE | Alu | Name=AluSc |
| ADediting_763154 | chr19_45688830_- | SINE | Alu | Name=AluSc |
| ADediting_763155 | chr19_45688844_- | SINE | Alu | Name=AluSc |
| ADediting_763156 | chr19_45688848_- | SINE | Alu | Name=AluSc |
| ADediting_763157 | chr19_45688857_- | SINE | Alu | Name=AluSc |
| ADediting_763158 | chr19_45688865_- | SINE | Alu | Name=AluSc |
| ADediting_763159 | chr19_45688871_- | SINE | Alu | Name=AluSc |
| ADediting_763160 | chr19_45688900_- | SINE | Alu | Name=AluSc |
| ADediting_763161 | chr19_45688914_- | SINE | Alu | Name=AluSc |
| ADediting_763162 | chr19_45688954_- | SINE | Alu | Name=AluSc |
| ADediting_763163 | chr19_45688958_- | SINE | Alu | Name=AluSc |
| ADediting_763164 | chr19_45688961_- | SINE | Alu | Name=AluSc |
| ADediting_763165 | chr19_45689008_- | SINE | Alu | Name=AluSc |
| ADediting_763166 | chr19_45689409_- | SINE | Alu | Name=AluSz |
| ADediting_763167 | chr19_45689411_- | SINE | Alu | Name=AluSz |
| ADediting_763168 | chr19_45689417_- | SINE | Alu | Name=AluSz |
| ADediting_763169 | chr19_45689423_- | SINE | Alu | Name=AluSz |
| ADediting_763170 | chr19_45689424_- | SINE | Alu | Name=AluSz |
| ADediting_763171 | chr19_45689425_- | SINE | Alu | Name=AluSz |
| ADediting_763172 | chr19_45689438_- | SINE | Alu | Name=AluSz |
| ADediting_763173 | chr19_45689450_- | SINE | Alu | Name=AluSz |
| ADediting_763174 | chr19_45689463_- | SINE | Alu | Name=AluSz |
| ADediting_763175 | chr19_45689485_- | SINE | Alu | Name=AluSz |
| ADediting_763176 | chr19_45689488_- | SINE | Alu | Name=AluSz |
| ADediting_763177 | chr19_45689499_- | SINE | Alu | Name=AluSz |
| ADediting_763178 | chr19_45689502_- | SINE | Alu | Name=AluSz |
| ADediting_763179 | chr19_45689505_- | SINE | Alu | Name=AluSz |
| ADediting_763180 | chr19_45689589_- | SINE | Alu | Name=AluSz |
| ADediting_763181 | chr19_45689610_- | SINE | Alu | Name=AluSz |
| ADediting_763182 | chr19_45689616_- | SINE | Alu | Name=AluSz |
| ADediting_763183 | chr19_45689625_- | SINE | Alu | Name=AluSz |
| ADediting_763184 | chr19_45689628_- | SINE | Alu | Name=AluSz |
| ADediting_763185 | chr19_45689629_- | SINE | Alu | Name=AluSz |
| ADediting_763186 | chr19_45689649_- | SINE | Alu | Name=AluSz |
| ADediting_763187 | chr19_45689929_- | SINE | Alu | Name=AluSx |
| ADediting_763188 | chr19_45689937_- | SINE | Alu | Name=AluSx |
| ADediting_763189 | chr19_45689954_- | SINE | Alu | Name=AluSx |
| ADediting_763190 | chr19_45689990_- | SINE | Alu | Name=AluSx |
| ADediting_763191 | chr19_45689991_- | SINE | Alu | Name=AluSx |
| ADediting_763192 | chr19_45690010_- | SINE | Alu | Name=AluSx |
| ADediting_763193 | chr19_45690385_- | SINE | Alu | Name=AluSx |
| ADediting_763194 | chr19_45690418_- | SINE | Alu | Name=AluSx |
| ADediting_763195 | chr19_45690444_- | SINE | Alu | Name=AluSx |
| ADediting_763196 | chr19_45690575_- | SINE | Alu | Name=AluSx1 |
| ADediting_763197 | chr19_45690587_- | SINE | Alu | Name=AluSx1 |
| ADediting_763198 | chr19_45690613_- | SINE | Alu | Name=AluSx1 |
| ADediting_763199 | chr19_45690639_- | SINE | Alu | Name=AluSx1 |
| ADediting_763200 | chr19_45690666_- | SINE | Alu | Name=AluSx1 |
| ADediting_763201 | chr19_45690688_- | SINE | Alu | Name=AluSx1 |
| ADediting_763202 | chr19_45690745_- | SINE | Alu | Name=AluSx1 |
| ADediting_763203 | chr19_45690749_- | SINE | Alu | Name=AluSx1 |
| ADediting_763204 | chr19_45690750_- | SINE | Alu | Name=AluSx1 |
| ADediting_763205 | chr19_45690780_- | SINE | Alu | Name=AluSx1 |
| ADediting_763206 | chr19_45690793_- | SINE | Alu | Name=AluSx1 |
| ADediting_763207 | chr19_45691177_- | SINE | Alu | Name=AluSx1 |
| ADediting_763208 | chr19_45691188_- | SINE | Alu | Name=AluSx1 |
| ADediting_763209 | chr19_45691198_- | SINE | Alu | Name=AluSx1 |
| ADediting_763210 | chr19_45691228_- | SINE | Alu | Name=AluSx1 |
| ADediting_763211 | chr19_45691268_- | SINE | Alu | Name=AluSx1 |
| ADediting_763212 | chr19_45691285_- | SINE | Alu | Name=AluSx1 |
| ADediting_763213 | chr19_45691295_- | SINE | Alu | Name=AluSx1 |
| ADediting_763214 | chr19_45691298_- | SINE | Alu | Name=AluSx1 |
| ADediting_763215 | chr19_45691299_- | SINE | Alu | Name=AluSx1 |
| ADediting_763216 | chr19_45691301_- | SINE | Alu | Name=AluSx1 |
| ADediting_763217 | chr19_45691302_- | SINE | Alu | Name=AluSx1 |
| ADediting_763218 | chr19_45691413_- | SINE | Alu | Name=AluSx1 |
| ADediting_763219 | chr19_45691571_- | SINE | Alu | Name=FLAM_C |
| ADediting_763220 | chr19_45691580_- | SINE | Alu | Name=FLAM_C |
| ADediting_763221 | chr19_45691627_- | SINE | Alu | Name=FLAM_C |
| ADediting_763222 | chr19_45691630_- | SINE | Alu | Name=FLAM_C |
| ADediting_763223 | chr19_45691638_- | SINE | Alu | Name=FLAM_C |
| ADediting_1556779 | chr19_45689706_- | SINE | Alu | Name=AluSz |
| ADediting_1556780 | chr19_45690606_- | SINE | Alu | Name=AluSx1 |
| ADediting_1556781 | chr19_45691165_- | SINE | Alu | Name=AluSx1 |
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RNA A-to-I editing events in the alternative splicing sites for SNRPD2 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| ES | ADediting_763197 | chr19_45690587_- | 45690583:45690605 | 3ss | 2i | CCCGCCTCGACCTTCCAAAGTGC | 3.44 | CCCGCCTCGACCTTCCAAGGTGC | -4.51 |
| ES | ADediting_763200 | chr19_45690666_- | 45690662:45690684 | 3ss | 2i | AACTTTCGTATTTTTAGTAGAGA | 1.68 | AACTTTCGTATTTTTAGTGGAGA | -6.27 |
| ES | ADediting_763200 | chr19_45690666_- | 45690665:45690687 | 3ss | 2e | GCTAACTTTCGTATTTTTAGTAG | 4.07 | GCTAACTTTCGTATTTTTAGTGG | 5.39 |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SNRPD2 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
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Protein coding region RNA A-to-I editings for SNRPD2 |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for SNRPD2 |
| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1631458 | chr19_40282624_- | ENSG00000125743.10 | ENST00000342669.7 | SNRPD2-201 | hsa-miR-641 | chr19 | 45687513 | 45687519 | 7mer-1a | 45687513 | 45687536 | 142 | -19.39 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000125743.10 | ENST00000391932.7 | SNRPD2-202 | hsa-miR-641 | chr19 | 45687513 | 45687519 | 7mer-1a | 45687513 | 45687536 | 142 | -19.39 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000125743.10 | ENST00000585392.2 | SNRPD2-203 | hsa-miR-641 | chr19 | 45687513 | 45687519 | 7mer-1a | 45687513 | 45687536 | 142 | -19.39 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000125743.10 | ENST00000587367.5 | SNRPD2-204 | hsa-miR-641 | chr19 | 45687513 | 45687519 | 7mer-1a | 45687513 | 45687536 | 142 | -19.39 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000125743.10 | ENST00000588301.5 | SNRPD2-206 | hsa-miR-641 | chr19 | 45687513 | 45687519 | 7mer-1a | 45687513 | 45687536 | 142 | -19.39 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000125743.10 | ENST00000588599.5 | SNRPD2-207 | hsa-miR-641 | chr19 | 45687513 | 45687519 | 7mer-1a | 45687513 | 45687536 | 142 | -19.39 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000125743.10 | ENST00000590212.1 | SNRPD2-208 | hsa-miR-641 | chr19 | 45687513 | 45687519 | 7mer-1a | 45687513 | 45687536 | 142 | -19.39 |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for SNRPD2 |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000587367.5 | protein_coding |  |  |
| ENST00000588599.5 | protein_coding |  |  |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_763196 | ENST00000587367.5 | chr19_45690575_- | 147 | -192.80 | -191.40 | -197.20 |
| ADediting_763197 | ENST00000587367.5 | chr19_45690587_- | 135 | -197.60 | -191.40 | -197.20 |
| ADediting_1556780 | ENST00000587367.5 | chr19_45690606_- | 116 | -191.60 | -191.40 | -197.20 |
| ADediting_763198 | ENST00000587367.5 | chr19_45690613_- | 109 | -192.00 | -191.40 | -197.20 |
| ADediting_763199 | ENST00000587367.5 | chr19_45690639_- | 83 | -191.10 | -191.40 | -197.20 |
| ADediting_763200 | ENST00000587367.5 | chr19_45690666_- | 56 | -191.40 | -191.40 | -197.20 |
| ADediting_763218 | ENST00000588599.5 | chr19_45691413_- | 359 | -263.00 | -260.80 | -269.10 |
| ADediting_763219 | ENST00000588599.5 | chr19_45691571_- | 201 | -262.90 | -260.80 | -269.10 |
| ADediting_763220 | ENST00000588599.5 | chr19_45691580_- | 192 | -262.00 | -260.80 | -269.10 |
| ADediting_763221 | ENST00000588599.5 | chr19_45691627_- | 145 | -263.40 | -260.80 | -269.10 |
| ADediting_763222 | ENST00000588599.5 | chr19_45691630_- | 142 | -263.50 | -260.80 | -269.10 |
| ADediting_763223 | ENST00000588599.5 | chr19_45691638_- | 134 | -263.40 | -260.80 | -269.10 |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for SNRPD2 |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | ADediting_763165 | chr19_45689008_- | 0.000625131527205157 | 0.193216370125557 | 0.0101642071646792 | 0.145785351157894 | 1.1926529790592e-09 | 0.336618860246234 |
| CER | ADediting_763172 | chr19_45689438_- | 0.0497664902227336 | 0.160496394487275 | 1.29176786234288e-05 | 0.347839447280547 | 0.20868199695309 | 0.103238893225841 |
| DLPFC | ADediting_763182 | chr19_45689616_- | 0.180673568148244 | 0.0762294185495757 | 0.831221987483725 | -0.0121538827436569 | 4.3262755531859e-09 | 0.32564474975243 |
| DLPFC | ADediting_763183 | chr19_45689625_- | 0.000550101758767185 | 0.195134689828452 | 0.588194025804222 | 0.0308699527034877 | 2.9330888335678e-15 | 0.428276181418654 |
| DLPFC | ADediting_763193 | chr19_45690385_- | 0.0339190494004929 | 0.120514021830831 | 0.172627773244754 | 0.0776558259587515 | 1.53243908270969e-09 | 0.334517564310195 |
| DLPFC | ADediting_763205 | chr19_45690780_- | 0.0414683927868605 | 0.115874735939011 | 0.304066672641248 | 0.0585588286440203 | 1.00636299723785e-08 | 0.318210296260689 |
| DLPFC | ADediting_763206 | chr19_45690793_- | 0.0132715556386386 | 0.140519080941497 | 0.36626221595746 | 0.0514891349474454 | 1.10783942589858e-13 | 0.4052471338382 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 2.35765452324143e-31 | 0.597258690662099 | 1.43614495307778e-52 | 0.728682860944561 | 0.000335610879896841 | 0.202384858182122 |
| AC | 7.5996158236243e-59 | 0.807749491513857 | 8.78290037051324e-49 | 0.76239556091213 | 3.59108299447474e-13 | 0.438504361617623 |
| PCC | 1.35021523066433e-16 | 0.551556579923215 | 1.28376941499405e-19 | 0.594231880472884 | 0.148691185839279 | 0.104896534586133 |
| TCX | 4.35050952556361e-06 | 0.365112255875792 | 5.49377974689649e-09 | 0.453751590498915 | 0.0352136620459553 | -0.172100043326414 |
| FP | 1.88997411304339e-07 | 0.378532110295735 | 2.689051660988e-14 | 0.530281899590323 | 0.0655930344330713 | -0.138313775278177 |
| IFG | 0.020617139699788 | 0.460221742794978 | 0.0682434752454172 | 0.370543184152395 | 0.0790801675423718 | -0.35779431617248 |
| STG | 2.65682280954823e-13 | 0.693432065767645 | 1.53819503621398e-10 | 0.6285639474452 | 0.249640763302494 | -0.127002244136781 |
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Relation with AD stages for SNRPD2 |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
| PG | 4.24115907669428e-08 | -0.388566131665339 |
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RelatedDrugs for SNRPD2 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SNRPD2 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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