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![]() | Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for FSCN1 |
Gene summary |
| Gene information | Gene symbol | FSCN1 | Gene ID | 6624 |
| Gene name | fascin actin-bundling protein 1 | |
| Synonyms | FAN1|HSN|SNL|p55 | |
| Cytomap | 7p22.1 | |
| Type of gene | protein-coding | |
| Description | fascin55 kDa actin-bundling proteinepididymis secretory sperm binding proteinfascin homolog 1, actin-bundling proteinsinged-like (fascin homolog, sea urchin) | |
| Modification date | 20200313 | |
| UniProtAcc | ||
| Context |
Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
| FSCN1 | GO:0007043 | cell-cell junction assembly | 9571235 |
| FSCN1 | GO:0010592 | positive regulation of lamellipodium assembly | 9571235 |
| FSCN1 | GO:0030035 | microspike assembly | 9571235 |
| FSCN1 | GO:0030036 | actin cytoskeleton organization | 9571235 |
| FSCN1 | GO:0030046 | parallel actin filament bundle assembly | 21685497 |
| FSCN1 | GO:0032534 | regulation of microvillus assembly | 9571235 |
| FSCN1 | GO:0032956 | regulation of actin cytoskeleton organization | 20137952 |
| FSCN1 | GO:0035089 | establishment of apical/basal cell polarity | 9571235 |
| FSCN1 | GO:0048870 | cell motility | 9571235 |
| FSCN1 | GO:0051017 | actin filament bundle assembly | 20393565 |
| FSCN1 | GO:0051491 | positive regulation of filopodium assembly | 9571235|21685497 |
| FSCN1 | GO:0071803 | positive regulation of podosome assembly | 20137952 |
| FSCN1 | GO:0090091 | positive regulation of extracellular matrix disassembly | 20137952 |
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RNA A-to-I events for FSCN1 |
RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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RNA editing frequencies across three data sets. |
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The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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RNA A-to-I editing events in AD. |
| ADediting_1339219(5597068, +), ADediting_1339220(5597090, +), ADediting_1339221(5597091, +), ADediting_1339234(5597262, +), ADediting_1339279(5597481, +), ADediting_1339282(5597546, +), ADediting_1339283(5597547, +), ADediting_1339328(5598577, +), ADediting_1339466(5599556, +), ADediting_1339467(5599557, +), ADediting_1339468(5599578, +), ADediting_1339469(5599615, +), ADediting_1339470(5599619, +), ADediting_1339471(5599659, +), ADediting_1339472(5599663, +), ADediting_1339473(5599669, +), ADediting_1339474(5599695, +), ADediting_1339475(5599712, +), ADediting_1339476(5599713, +), ADediting_1339477(5599731, +), ADediting_1339492(5600150, +), ADediting_1339493(5600156, +), ADediting_1339494(5600157, +), ADediting_1339495(5600230, +), ADediting_1339496(5600231, +), ADediting_1339497(5600267, +), ADediting_1339498(5600277, +), ADediting_1339499(5600293, +), ADediting_1339500(5600294, +), ADediting_1339501(5600299, +), ADediting_1339502(5600307, +), ADediting_1339503(5600326, +), ADediting_1339504(5600329, +), ADediting_1339505(5600334, +), ADediting_1339506(5600335, +), ADediting_1339507(5600339, +), ADediting_1339508(5600536, +), ADediting_1339509(5600561, +), ADediting_1339510(5600592, +), ADediting_1339511(5600595, +), ADediting_1339512(5600596, +), ADediting_1339513(5600609, +), ADediting_1339514(5600621, +), ADediting_1339515(5600631, +), ADediting_1339516(5600653, +), ADediting_1339517(5600677, +), ADediting_1339518(5600697, +), ADediting_1339519(5600783, +), ADediting_1339520(5600786, +), ADediting_1339521(5600793, +), ADediting_1339522(5600841, +), ADediting_1339523(5600865, +), ADediting_1339524(5600915, +), ADediting_1339525(5600916, +), ADediting_1339526(5600991, +), ADediting_1339527(5601063, +), ADediting_1339553(5601267, +), ADediting_1339554(5601283, +), ADediting_1339555(5601296, +), ADediting_1339556(5601303, +), ADediting_1339557(5601329, +), ADediting_1339558(5601332, +), ADediting_1339559(5601342, +), ADediting_1339560(5601364, +), ADediting_1339561(5601412, +), ADediting_1339562(5601464, +), ADediting_1339563(5601465, +), ADediting_1339564(5601582, +), ADediting_1339565(5601583, +), ADediting_1339567(5601612, +), ADediting_1339574(5601636, +), ADediting_1339575(5601637, +), ADediting_1339576(5601647, +), ADediting_1339577(5601656, +), ADediting_1339578(5601693, +), ADediting_1339579(5601719, +), ADediting_1339580(5601755, +), ADediting_1339581(5601765, +), ADediting_1339582(5601769, +), ADediting_1339583(5601789, +), ADediting_1339589(5602038, +), ADediting_1339592(5602238, +), ADediting_1339593(5602273, +), ADediting_1339599(5602721, +), ADediting_1339600(5602729, +), ADediting_1339601(5602737, +), ADediting_1339602(5602762, +), ADediting_1339603(5602783, +), ADediting_1339604(5602821, +), ADediting_1339605(5602822, +), ADediting_1339606(5602825, +), ADediting_1339607(5602910, +), ADediting_1339608(5602930, +), ADediting_1339609(5602938, +), ADediting_1339610(5602946, +), ADediting_1339611(5602949, +), ADediting_1339612(5602972, +), ADediting_1587831(5597096, +), ADediting_1587832(5597319, +), ADediting_1587848(5601623, +), ADediting_1587849(5601694, +), ADediting_1587850(5601760, +), ADediting_1587851(5601827, +), ADediting_1587852(5602089, +), ADediting_1587853(5602931, +), ADediting_1666242(5600359, +), |
Top |
RNA editing positional annotations for FSCN1 using Annovar |
Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_1339219 | chr7_5597068_+ | intronic |
| ADediting_1339220 | chr7_5597090_+ | intronic |
| ADediting_1339221 | chr7_5597091_+ | intronic |
| ADediting_1339234 | chr7_5597262_+ | intronic |
| ADediting_1339279 | chr7_5597481_+ | intronic |
| ADediting_1339282 | chr7_5597546_+ | intronic |
| ADediting_1339283 | chr7_5597547_+ | intronic |
| ADediting_1339328 | chr7_5598577_+ | intronic |
| ADediting_1339466 | chr7_5599556_+ | intronic |
| ADediting_1339467 | chr7_5599557_+ | intronic |
| ADediting_1339468 | chr7_5599578_+ | intronic |
| ADediting_1339469 | chr7_5599615_+ | intronic |
| ADediting_1339470 | chr7_5599619_+ | intronic |
| ADediting_1339471 | chr7_5599659_+ | intronic |
| ADediting_1339472 | chr7_5599663_+ | intronic |
| ADediting_1339473 | chr7_5599669_+ | intronic |
| ADediting_1339474 | chr7_5599695_+ | intronic |
| ADediting_1339475 | chr7_5599712_+ | intronic |
| ADediting_1339476 | chr7_5599713_+ | intronic |
| ADediting_1339477 | chr7_5599731_+ | intronic |
| ADediting_1339492 | chr7_5600150_+ | intronic |
| ADediting_1339493 | chr7_5600156_+ | intronic |
| ADediting_1339494 | chr7_5600157_+ | intronic |
| ADediting_1339495 | chr7_5600230_+ | intronic |
| ADediting_1339496 | chr7_5600231_+ | intronic |
| ADediting_1339497 | chr7_5600267_+ | intronic |
| ADediting_1339498 | chr7_5600277_+ | intronic |
| ADediting_1339499 | chr7_5600293_+ | intronic |
| ADediting_1339500 | chr7_5600294_+ | intronic |
| ADediting_1339501 | chr7_5600299_+ | intronic |
| ADediting_1339502 | chr7_5600307_+ | intronic |
| ADediting_1339503 | chr7_5600326_+ | intronic |
| ADediting_1339504 | chr7_5600329_+ | intronic |
| ADediting_1339505 | chr7_5600334_+ | intronic |
| ADediting_1339506 | chr7_5600335_+ | intronic |
| ADediting_1339507 | chr7_5600339_+ | intronic |
| ADediting_1339508 | chr7_5600536_+ | intronic |
| ADediting_1339509 | chr7_5600561_+ | intronic |
| ADediting_1339510 | chr7_5600592_+ | intronic |
| ADediting_1339511 | chr7_5600595_+ | intronic |
| ADediting_1339512 | chr7_5600596_+ | intronic |
| ADediting_1339513 | chr7_5600609_+ | intronic |
| ADediting_1339514 | chr7_5600621_+ | intronic |
| ADediting_1339515 | chr7_5600631_+ | intronic |
| ADediting_1339516 | chr7_5600653_+ | intronic |
| ADediting_1339517 | chr7_5600677_+ | intronic |
| ADediting_1339518 | chr7_5600697_+ | intronic |
| ADediting_1339519 | chr7_5600783_+ | intronic |
| ADediting_1339520 | chr7_5600786_+ | intronic |
| ADediting_1339521 | chr7_5600793_+ | intronic |
| ADediting_1339522 | chr7_5600841_+ | intronic |
| ADediting_1339523 | chr7_5600865_+ | intronic |
| ADediting_1339524 | chr7_5600915_+ | intronic |
| ADediting_1339525 | chr7_5600916_+ | intronic |
| ADediting_1339526 | chr7_5600991_+ | intronic |
| ADediting_1339527 | chr7_5601063_+ | intronic |
| ADediting_1339553 | chr7_5601267_+ | intronic |
| ADediting_1339554 | chr7_5601283_+ | intronic |
| ADediting_1339555 | chr7_5601296_+ | intronic |
| ADediting_1339556 | chr7_5601303_+ | intronic |
| ADediting_1339557 | chr7_5601329_+ | intronic |
| ADediting_1339558 | chr7_5601332_+ | intronic |
| ADediting_1339559 | chr7_5601342_+ | intronic |
| ADediting_1339560 | chr7_5601364_+ | intronic |
| ADediting_1339561 | chr7_5601412_+ | intronic |
| ADediting_1339562 | chr7_5601464_+ | intronic |
| ADediting_1339563 | chr7_5601465_+ | intronic |
| ADediting_1339564 | chr7_5601582_+ | intronic |
| ADediting_1339565 | chr7_5601583_+ | intronic |
| ADediting_1339567 | chr7_5601612_+ | intronic |
| ADediting_1339574 | chr7_5601636_+ | intronic |
| ADediting_1339575 | chr7_5601637_+ | intronic |
| ADediting_1339576 | chr7_5601647_+ | intronic |
| ADediting_1339577 | chr7_5601656_+ | intronic |
| ADediting_1339578 | chr7_5601693_+ | intronic |
| ADediting_1339579 | chr7_5601719_+ | intronic |
| ADediting_1339580 | chr7_5601755_+ | intronic |
| ADediting_1339581 | chr7_5601765_+ | intronic |
| ADediting_1339582 | chr7_5601769_+ | intronic |
| ADediting_1339583 | chr7_5601789_+ | intronic |
| ADediting_1339589 | chr7_5602038_+ | intronic |
| ADediting_1339592 | chr7_5602238_+ | intronic |
| ADediting_1339593 | chr7_5602273_+ | intronic |
| ADediting_1339599 | chr7_5602721_+ | intronic |
| ADediting_1339600 | chr7_5602729_+ | intronic |
| ADediting_1339601 | chr7_5602737_+ | intronic |
| ADediting_1339602 | chr7_5602762_+ | intronic |
| ADediting_1339603 | chr7_5602783_+ | intronic |
| ADediting_1339604 | chr7_5602821_+ | intronic |
| ADediting_1339605 | chr7_5602822_+ | intronic |
| ADediting_1339606 | chr7_5602825_+ | intronic |
| ADediting_1339607 | chr7_5602910_+ | intronic |
| ADediting_1339608 | chr7_5602930_+ | intronic |
| ADediting_1339609 | chr7_5602938_+ | intronic |
| ADediting_1339610 | chr7_5602946_+ | intronic |
| ADediting_1339611 | chr7_5602949_+ | intronic |
| ADediting_1339612 | chr7_5602972_+ | intronic |
| ADediting_1587831 | chr7_5597096_+ | intronic |
| ADediting_1587832 | chr7_5597319_+ | intronic |
| ADediting_1587848 | chr7_5601623_+ | intronic |
| ADediting_1587849 | chr7_5601694_+ | intronic |
| ADediting_1587850 | chr7_5601760_+ | intronic |
| ADediting_1587851 | chr7_5601827_+ | intronic |
| ADediting_1587852 | chr7_5602089_+ | intronic |
| ADediting_1587853 | chr7_5602931_+ | intronic |
| ADediting_1666242 | chr7_5600359_+ | intronic |
Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_1339219 | chr7_5597068_+ | SINE | Alu | Name=AluJb |
| ADediting_1339220 | chr7_5597090_+ | SINE | Alu | Name=AluJb |
| ADediting_1339221 | chr7_5597091_+ | SINE | Alu | Name=AluJb |
| ADediting_1339234 | chr7_5597262_+ | SINE | Alu | Name=AluJb |
| ADediting_1339279 | chr7_5597481_+ | SINE | Alu | Name=AluSp |
| ADediting_1339282 | chr7_5597546_+ | SINE | Alu | Name=AluSp |
| ADediting_1339283 | chr7_5597547_+ | SINE | Alu | Name=AluSp |
| ADediting_1339466 | chr7_5599556_+ | SINE | Alu | Name=AluJo |
| ADediting_1339467 | chr7_5599557_+ | SINE | Alu | Name=AluJo |
| ADediting_1339468 | chr7_5599578_+ | SINE | Alu | Name=AluJo |
| ADediting_1339469 | chr7_5599615_+ | SINE | Alu | Name=AluJo |
| ADediting_1339470 | chr7_5599619_+ | SINE | Alu | Name=AluJo |
| ADediting_1339471 | chr7_5599659_+ | SINE | Alu | Name=AluJo |
| ADediting_1339472 | chr7_5599663_+ | SINE | Alu | Name=AluJo |
| ADediting_1339473 | chr7_5599669_+ | SINE | Alu | Name=AluJo |
| ADediting_1339474 | chr7_5599695_+ | SINE | Alu | Name=AluJo |
| ADediting_1339475 | chr7_5599712_+ | SINE | Alu | Name=AluJo |
| ADediting_1339476 | chr7_5599713_+ | SINE | Alu | Name=AluJo |
| ADediting_1339477 | chr7_5599731_+ | SINE | Alu | Name=AluJo |
| ADediting_1339492 | chr7_5600150_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339493 | chr7_5600156_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339494 | chr7_5600157_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339495 | chr7_5600230_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339496 | chr7_5600231_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339497 | chr7_5600267_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339498 | chr7_5600277_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339499 | chr7_5600293_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339500 | chr7_5600294_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339501 | chr7_5600299_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339502 | chr7_5600307_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339503 | chr7_5600326_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339504 | chr7_5600329_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339505 | chr7_5600334_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339506 | chr7_5600335_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339507 | chr7_5600339_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339508 | chr7_5600536_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339509 | chr7_5600561_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339510 | chr7_5600592_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339511 | chr7_5600595_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339512 | chr7_5600596_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339513 | chr7_5600609_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339514 | chr7_5600621_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339515 | chr7_5600631_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339516 | chr7_5600653_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339517 | chr7_5600677_+ | SINE | Alu | Name=AluY |
| ADediting_1339518 | chr7_5600697_+ | SINE | Alu | Name=AluY |
| ADediting_1339519 | chr7_5600783_+ | SINE | Alu | Name=AluY |
| ADediting_1339520 | chr7_5600786_+ | SINE | Alu | Name=AluY |
| ADediting_1339521 | chr7_5600793_+ | SINE | Alu | Name=AluY |
| ADediting_1339522 | chr7_5600841_+ | SINE | Alu | Name=AluY |
| ADediting_1339523 | chr7_5600865_+ | SINE | Alu | Name=AluY |
| ADediting_1339524 | chr7_5600915_+ | SINE | Alu | Name=AluY |
| ADediting_1339525 | chr7_5600916_+ | SINE | Alu | Name=AluY |
| ADediting_1339526 | chr7_5600991_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339527 | chr7_5601063_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1339553 | chr7_5601267_+ | SINE | Alu | Name=AluSx |
| ADediting_1339554 | chr7_5601283_+ | SINE | Alu | Name=AluSx |
| ADediting_1339555 | chr7_5601296_+ | SINE | Alu | Name=AluSx |
| ADediting_1339556 | chr7_5601303_+ | SINE | Alu | Name=AluSx |
| ADediting_1339557 | chr7_5601329_+ | SINE | Alu | Name=AluSx |
| ADediting_1339558 | chr7_5601332_+ | SINE | Alu | Name=AluSx |
| ADediting_1339559 | chr7_5601342_+ | SINE | Alu | Name=AluSx |
| ADediting_1339560 | chr7_5601364_+ | SINE | Alu | Name=AluSx |
| ADediting_1339561 | chr7_5601412_+ | SINE | Alu | Name=AluSx |
| ADediting_1339562 | chr7_5601464_+ | SINE | Alu | Name=AluSx |
| ADediting_1339563 | chr7_5601465_+ | SINE | Alu | Name=AluSx |
| ADediting_1339564 | chr7_5601582_+ | SINE | Alu | Name=AluJr |
| ADediting_1339565 | chr7_5601583_+ | SINE | Alu | Name=AluJr |
| ADediting_1339567 | chr7_5601612_+ | SINE | Alu | Name=AluJr |
| ADediting_1339574 | chr7_5601636_+ | SINE | Alu | Name=AluJr |
| ADediting_1339575 | chr7_5601637_+ | SINE | Alu | Name=AluJr |
| ADediting_1339576 | chr7_5601647_+ | SINE | Alu | Name=AluJr |
| ADediting_1339577 | chr7_5601656_+ | SINE | Alu | Name=AluJr |
| ADediting_1339578 | chr7_5601693_+ | SINE | Alu | Name=AluJr |
| ADediting_1339579 | chr7_5601719_+ | SINE | Alu | Name=AluJr |
| ADediting_1339580 | chr7_5601755_+ | SINE | Alu | Name=AluJr |
| ADediting_1339581 | chr7_5601765_+ | SINE | Alu | Name=AluJr |
| ADediting_1339582 | chr7_5601769_+ | SINE | Alu | Name=AluJr |
| ADediting_1339583 | chr7_5601789_+ | SINE | Alu | Name=AluJr |
| ADediting_1339589 | chr7_5602038_+ | SINE | Alu | Name=AluSq |
| ADediting_1339592 | chr7_5602238_+ | SINE | Alu | Name=FLAM_C |
| ADediting_1339593 | chr7_5602273_+ | SINE | Alu | Name=FLAM_C |
| ADediting_1339599 | chr7_5602721_+ | SINE | Alu | Name=AluJo |
| ADediting_1339600 | chr7_5602729_+ | SINE | Alu | Name=AluJo |
| ADediting_1339601 | chr7_5602737_+ | SINE | Alu | Name=AluJo |
| ADediting_1339602 | chr7_5602762_+ | SINE | Alu | Name=AluJo |
| ADediting_1339603 | chr7_5602783_+ | SINE | Alu | Name=AluJo |
| ADediting_1339604 | chr7_5602821_+ | SINE | Alu | Name=AluJo |
| ADediting_1339605 | chr7_5602822_+ | SINE | Alu | Name=AluJo |
| ADediting_1339606 | chr7_5602825_+ | SINE | Alu | Name=AluJo |
| ADediting_1339607 | chr7_5602910_+ | SINE | Alu | Name=AluJo |
| ADediting_1339608 | chr7_5602930_+ | SINE | Alu | Name=AluJo |
| ADediting_1339609 | chr7_5602938_+ | SINE | Alu | Name=AluJo |
| ADediting_1339610 | chr7_5602946_+ | SINE | Alu | Name=AluJo |
| ADediting_1339611 | chr7_5602949_+ | SINE | Alu | Name=AluJo |
| ADediting_1339612 | chr7_5602972_+ | SINE | Alu | Name=AluJo |
| ADediting_1587831 | chr7_5597096_+ | SINE | Alu | Name=AluJb |
| ADediting_1587832 | chr7_5597319_+ | SINE | Alu | Name=AluJb |
| ADediting_1587848 | chr7_5601623_+ | SINE | Alu | Name=AluJr |
| ADediting_1587849 | chr7_5601694_+ | SINE | Alu | Name=AluJr |
| ADediting_1587850 | chr7_5601760_+ | SINE | Alu | Name=AluJr |
| ADediting_1587851 | chr7_5601827_+ | SINE | Alu | Name=AluJr |
| ADediting_1587852 | chr7_5602089_+ | SINE | Alu | Name=AluSq |
| ADediting_1587853 | chr7_5602931_+ | SINE | Alu | Name=AluJo |
| ADediting_1666242 | chr7_5600359_+ | SINE | Alu | Name=AluSx1 |
Top |
RNA A-to-I editing events in the alternative splicing sites for FSCN1 |
RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| ES | ADediting_1339599 | chr7_5602721_+ | 5602703:5602725 | 3ss | 2i | TTTTGTTTTTTTTGAGACAGGGT | 3.64 | TTTTGTTTTTTTTGAGACGGGGT | -4.32 |
Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for FSCN1 |
Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.* The grey color means N/A. |
Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.* Click on the image to enlarge it in a new window. |
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- Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.* Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
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Protein coding region RNA A-to-I editings for FSCN1 |
- Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for FSCN1 |
RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1337758 | chr7_5495892_- | ENSG00000075618.18 | ENST00000382361.8 | FSCN1-201 | hsa-miR-589-5p | chr7 | 5605661 | 5605667 | 7mer-m8 | 5605647 | 5605668 | 143 | -18.51 |
RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_527135 | chr16_24203190_+ | ENSG00000075618.18 | ENST00000382361.8 | FSCN1-201 | hsa-miR-1273h-3p | chr7 | 5606642 | 5606648 | 7mer-m8 | 5606629 | 5606649 | 146 | -18.27 |
Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for FSCN1 |
- RNA A-to-I editing in mRNA.* Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for FSCN1 |
Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | ADediting_1339466 | chr7_5599556_+ | 0.00392132549439983 | 0.163381999382306 | 0.347177183791453 | 0.0535709474086193 | 3.2456313903011e-18 | 0.467223172172354 |
| DLPFC | ADediting_1339493 | chr7_5600156_+ | 0.0427559519128558 | 0.115156080105544 | 0.618488855100381 | 0.0283931096020505 | 1.71219884306401e-08 | 0.313424120068022 |
| DLPFC | ADediting_1339494 | chr7_5600157_+ | 0.00311237620193883 | 0.167402906731236 | 0.206439999161003 | 0.0719547961395087 | 2.59244685387694e-11 | 0.366911507412942 |
| DLPFC | ADediting_1339495 | chr7_5600230_+ | 0.0387775002726595 | 0.117439575446685 | 0.995861663440489 | 0.000295777297721741 | 2.76838586798153e-19 | 0.480167230677657 |
| DLPFC | ADediting_1339496 | chr7_5600231_+ | 0.00645201051470582 | 0.154400905225672 | 0.575857276805017 | 0.0318951690795557 | 1.1988325914382e-24 | 0.53790727545319 |
| DLPFC | ADediting_1339505 | chr7_5600334_+ | 0.59608797711549 | 0.0302191412026112 | 0.355164113388455 | -0.0526912021592186 | 2.38399901198578e-13 | 0.400152681099944 |
| DLPFC | ADediting_1339508 | chr7_5600536_+ | 0.121305242721025 | 0.0881800952058746 | 0.414513295439344 | -0.0465071744111554 | 4.56176100441076e-14 | 0.411038902629548 |
| DLPFC | ADediting_1339554 | chr7_5601283_+ | 0.00175786373731575 | 0.176988983785162 | 0.118311912632534 | 0.0888932789377557 | 7.80155012907948e-11 | 0.358519241325505 |
| DLPFC | ADediting_1339555 | chr7_5601296_+ | 0.0185831772612632 | 0.133625952636851 | 0.0433340235324093 | 0.1148393375634 | 1.09048208534424e-08 | 0.317492700893687 |
| DLPFC | ADediting_1339559 | chr7_5601342_+ | 0.0501833569124306 | 0.111333255322714 | 0.266305002276721 | 0.0633277583348396 | 6.50360012737359e-11 | 0.359922330673338 |
| DLPFC | ADediting_1339576 | chr7_5601647_+ | 0.800135432450574 | 0.0144367654270666 | 0.333544417576307 | -0.055102729430046 | 3.25423096606696e-10 | 0.347260793546226 |
| TCX | ADediting_1339577 | chr7_5601656_+ | 0.456166732605795 | -0.0612987203518259 | 0.00718065488077892 | -0.218668954641458 | 6.37633997360643e-05 | 0.320497248716146 |
| DLPFC | ADediting_1339582 | chr7_5601769_+ | 0.0101235561080326 | 0.145863231304869 | 0.815997406728433 | 0.0132692724886775 | 3.071121813942e-30 | 0.588191547135495 |
| DLPFC | ADediting_1339610 | chr7_5602946_+ | 0.0481150749663334 | 0.11234742197854 | 0.178238569206279 | 0.0766560538693862 | 6.25569368265173e-09 | 0.322421926888199 |
Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 1.18047832538771e-28 | 0.574791491526393 | 6.97167794253073e-32 | 0.601463820145249 | 9.56264501236325e-18 | 0.461363206806083 |
| AC | 3.19986980021356e-59 | 0.809240431942234 | 7.36705583673658e-54 | 0.786652340588705 | 2.84926692287854e-12 | 0.422978279178883 |
| PCC | 1.36873537442044e-37 | 0.762515772320495 | 6.38643472878668e-44 | 0.800677083951218 | 0.0692875172009416 | 0.13173158313784 |
| TCX | 2.49844259349017e-08 | 0.435758737633699 | 0.0941739367187985 | 0.13716424767276 | 8.17760291144742e-06 | 0.355218966765822 |
| FP | 4.39393774166781e-13 | 0.508288480912301 | 2.59075998732789e-10 | 0.451248307163161 | 2.02035264304601e-05 | 0.313609474354448 |
| IFG | 0.00145000497536272 | 0.60209508684741 | 0.0412416448385833 | 0.41101897245863 | 0.226520592656327 | 0.250825420587344 |
| STG | 2.59414400118234e-22 | 0.828074586651672 | 1.24066489858915e-09 | 0.60340042109 | 0.00677488109105734 | 0.293302780838754 |
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Relation with AD stages for FSCN1 |
Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
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RelatedDrugs for FSCN1 |
Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for FSCN1 |
Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |