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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited versus non-edited samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with AD stages

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene


Gene summary for SLC20A1

check button Gene summary
Gene informationGene symbol

SLC20A1

Gene ID

6574

Gene namesolute carrier family 20 member 1
SynonymsGLVR1|Glvr-1|PIT1|PiT-1
Cytomap

2q14.1

Type of geneprotein-coding
Descriptionsodium-dependent phosphate transporter 1gibbon ape leukemia virus receptor 1leukemia virus receptor 1 homologsolute carrier family 20 (phosphate transporter), member 1
Modification date20200313
UniProtAcc

Q8WUM9,

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for SLC20A1

check buttonRNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
all structure

check button RNA editing frequencies across three data sets.
boxplot

check buttonThe number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
boxplot

check button RNA A-to-I editing events in AD.
ADediting_804434(112653849, +), ADediting_804435(112653870, +), ADediting_804436(112653896, +), ADediting_804437(112653897, +), ADediting_804438(112654044, +), ADediting_804439(112654068, +), ADediting_804440(112654633, +), ADediting_804441(112654641, +), ADediting_804442(112654642, +), ADediting_804443(112654647, +), ADediting_804444(112654685, +), ADediting_804445(112654693, +), ADediting_804446(112654694, +), ADediting_804447(112654709, +), ADediting_804448(112654718, +), ADediting_804449(112654719, +), ADediting_804450(112654724, +), ADediting_804451(112654730, +), ADediting_804452(112654733, +), ADediting_804453(112654734, +), ADediting_804454(112654735, +), ADediting_804455(112654740, +), ADediting_804456(112654744, +), ADediting_804457(112654745, +), ADediting_804458(112654746, +), ADediting_804459(112654749, +), ADediting_804460(112654750, +), ADediting_804461(112654753, +), ADediting_804462(112654759, +), ADediting_804463(112654765, +), ADediting_804464(112654776, +), ADediting_804465(112654781, +), ADediting_804466(112654785, +), ADediting_804467(112654798, +), ADediting_804468(112654802, +), ADediting_804469(112654805, +), ADediting_804470(112654808, +), ADediting_804471(112654811, +), ADediting_804472(112654816, +), ADediting_804473(112654824, +), ADediting_804474(112654837, +), ADediting_804475(112654841, +), ADediting_804476(112654845, +), ADediting_804477(112654846, +), ADediting_804478(112654856, +), ADediting_804479(112654866, +), ADediting_804480(112655008, +), ADediting_804481(112655033, +), ADediting_804482(112655049, +), ADediting_804483(112655073, +), ADediting_804484(112655086, +), ADediting_804485(112655124, +), ADediting_804486(112655130, +), ADediting_804487(112655134, +), ADediting_804488(112655135, +), ADediting_804489(112655149, +), ADediting_804490(112655152, +), ADediting_804491(112655166, +), ADediting_804492(112655191, +), ADediting_804493(112655197, +), ADediting_804494(112655221, +), ADediting_804495(112655231, +), ADediting_804496(112655243, +), ADediting_804497(112655245, +), ADediting_804498(112655252, +), ADediting_804499(112655953, +), ADediting_804500(112656259, +), ADediting_804501(112656260, +), ADediting_804502(112656265, +), ADediting_804503(112656276, +), ADediting_804504(112656297, +), ADediting_804505(112656301, +), ADediting_804506(112656309, +), ADediting_804507(112656314, +), ADediting_804508(112656326, +), ADediting_804509(112656336, +), ADediting_804510(112656346, +), ADediting_804511(112656362, +), ADediting_804512(112656363, +), ADediting_804513(112656381, +), ADediting_804514(112656384, +), ADediting_804515(112656463, +), ADediting_804516(112656475, +), ADediting_804517(112661553, +), ADediting_804518(112661588, +), ADediting_804519(112661610, +), ADediting_804520(112661613, +), ADediting_804521(112661629, +), ADediting_804522(112661649, +), ADediting_804523(112661675, +), ADediting_804524(112661678, +), ADediting_804525(112661701, +), ADediting_804526(112661749, +), ADediting_804527(112661759, +), ADediting_804528(112661777, +), ADediting_804529(112661810, +), ADediting_804530(112661811, +), ADediting_804531(112661817, +), ADediting_804532(112661823, +), ADediting_804533(112662304, +), ADediting_804534(112662310, +), ADediting_804535(112662327, +), ADediting_804536(112662332, +), ADediting_804537(112662365, +), ADediting_804538(112662370, +), ADediting_804539(112662373, +), ADediting_804540(112662398, +), ADediting_804541(112662409, +), ADediting_804542(112662434, +), ADediting_804543(112662501, +), ADediting_804544(112662545, +), ADediting_1560500(112651497, +), ADediting_1560501(112651517, +), ADediting_1560502(112651533, +), ADediting_1560503(112653873, +), ADediting_1560504(112653893, +), ADediting_1560505(112653910, +), ADediting_1560506(112654066, +), ADediting_1560507(112654680, +), ADediting_1560508(112654699, +), ADediting_1560509(112655043, +), ADediting_1560510(112655098, +), ADediting_1560511(112655178, +), ADediting_1560512(112655786, +), ADediting_1560513(112655875, +), ADediting_1632175(112654792, +), ADediting_1632176(112655817, +),

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RNA editing positional annotations for SLC20A1 using Annovar

check button Protein coding RNA editing(s).
ADeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
ADeditome IDPositionVariant type
ADediting_804434chr2_112653849_+intronic
ADediting_804435chr2_112653870_+intronic
ADediting_804436chr2_112653896_+intronic
ADediting_804437chr2_112653897_+intronic
ADediting_804438chr2_112654044_+intronic
ADediting_804439chr2_112654068_+intronic
ADediting_804440chr2_112654633_+intronic
ADediting_804441chr2_112654641_+intronic
ADediting_804442chr2_112654642_+intronic
ADediting_804443chr2_112654647_+intronic
ADediting_804444chr2_112654685_+intronic
ADediting_804445chr2_112654693_+intronic
ADediting_804446chr2_112654694_+intronic
ADediting_804447chr2_112654709_+intronic
ADediting_804448chr2_112654718_+intronic
ADediting_804449chr2_112654719_+intronic
ADediting_804450chr2_112654724_+intronic
ADediting_804451chr2_112654730_+intronic
ADediting_804452chr2_112654733_+intronic
ADediting_804453chr2_112654734_+intronic
ADediting_804454chr2_112654735_+intronic
ADediting_804455chr2_112654740_+intronic
ADediting_804456chr2_112654744_+intronic
ADediting_804457chr2_112654745_+intronic
ADediting_804458chr2_112654746_+intronic
ADediting_804459chr2_112654749_+intronic
ADediting_804460chr2_112654750_+intronic
ADediting_804461chr2_112654753_+intronic
ADediting_804462chr2_112654759_+intronic
ADediting_804463chr2_112654765_+intronic
ADediting_804464chr2_112654776_+intronic
ADediting_804465chr2_112654781_+intronic
ADediting_804466chr2_112654785_+intronic
ADediting_804467chr2_112654798_+intronic
ADediting_804468chr2_112654802_+intronic
ADediting_804469chr2_112654805_+intronic
ADediting_804470chr2_112654808_+intronic
ADediting_804471chr2_112654811_+intronic
ADediting_804472chr2_112654816_+intronic
ADediting_804473chr2_112654824_+intronic
ADediting_804474chr2_112654837_+intronic
ADediting_804475chr2_112654841_+intronic
ADediting_804476chr2_112654845_+intronic
ADediting_804477chr2_112654846_+intronic
ADediting_804478chr2_112654856_+intronic
ADediting_804479chr2_112654866_+intronic
ADediting_804480chr2_112655008_+intronic
ADediting_804481chr2_112655033_+intronic
ADediting_804482chr2_112655049_+intronic
ADediting_804483chr2_112655073_+intronic
ADediting_804484chr2_112655086_+intronic
ADediting_804485chr2_112655124_+intronic
ADediting_804486chr2_112655130_+intronic
ADediting_804487chr2_112655134_+intronic
ADediting_804488chr2_112655135_+intronic
ADediting_804489chr2_112655149_+intronic
ADediting_804490chr2_112655152_+intronic
ADediting_804491chr2_112655166_+intronic
ADediting_804492chr2_112655191_+intronic
ADediting_804493chr2_112655197_+intronic
ADediting_804494chr2_112655221_+intronic
ADediting_804495chr2_112655231_+intronic
ADediting_804496chr2_112655243_+intronic
ADediting_804497chr2_112655245_+intronic
ADediting_804498chr2_112655252_+intronic
ADediting_804499chr2_112655953_+intronic
ADediting_804500chr2_112656259_+intronic
ADediting_804501chr2_112656260_+intronic
ADediting_804502chr2_112656265_+intronic
ADediting_804503chr2_112656276_+intronic
ADediting_804504chr2_112656297_+intronic
ADediting_804505chr2_112656301_+intronic
ADediting_804506chr2_112656309_+intronic
ADediting_804507chr2_112656314_+intronic
ADediting_804508chr2_112656326_+intronic
ADediting_804509chr2_112656336_+intronic
ADediting_804510chr2_112656346_+intronic
ADediting_804511chr2_112656362_+intronic
ADediting_804512chr2_112656363_+intronic
ADediting_804513chr2_112656381_+intronic
ADediting_804514chr2_112656384_+intronic
ADediting_804515chr2_112656463_+intronic
ADediting_804516chr2_112656475_+intronic
ADediting_804517chr2_112661553_+intronic
ADediting_804518chr2_112661588_+intronic
ADediting_804519chr2_112661610_+intronic
ADediting_804520chr2_112661613_+intronic
ADediting_804521chr2_112661629_+intronic
ADediting_804522chr2_112661649_+intronic
ADediting_804523chr2_112661675_+intronic
ADediting_804524chr2_112661678_+intronic
ADediting_804525chr2_112661701_+intronic
ADediting_804526chr2_112661749_+intronic
ADediting_804527chr2_112661759_+intronic
ADediting_804528chr2_112661777_+intronic
ADediting_804529chr2_112661810_+intronic
ADediting_804530chr2_112661811_+intronic
ADediting_804531chr2_112661817_+intronic
ADediting_804532chr2_112661823_+intronic
ADediting_804533chr2_112662304_+intronic
ADediting_804534chr2_112662310_+intronic
ADediting_804535chr2_112662327_+intronic
ADediting_804536chr2_112662332_+intronic
ADediting_804537chr2_112662365_+intronic
ADediting_804538chr2_112662370_+intronic
ADediting_804539chr2_112662373_+intronic
ADediting_804540chr2_112662398_+intronic
ADediting_804541chr2_112662409_+intronic
ADediting_804542chr2_112662434_+intronic
ADediting_804543chr2_112662501_+intronic
ADediting_804544chr2_112662545_+intronic
ADediting_1560500chr2_112651497_+intronic
ADediting_1560501chr2_112651517_+intronic
ADediting_1560502chr2_112651533_+intronic
ADediting_1560503chr2_112653873_+intronic
ADediting_1560504chr2_112653893_+intronic
ADediting_1560505chr2_112653910_+intronic
ADediting_1560506chr2_112654066_+intronic
ADediting_1560507chr2_112654680_+intronic
ADediting_1560508chr2_112654699_+intronic
ADediting_1560509chr2_112655043_+intronic
ADediting_1560510chr2_112655098_+intronic
ADediting_1560511chr2_112655178_+intronic
ADediting_1560512chr2_112655786_+intronic
ADediting_1560513chr2_112655875_+intronic
ADediting_1632175chr2_112654792_+intronic
ADediting_1632176chr2_112655817_+intronic

check button Repat-regional RNA editing(s).
ADeditome IDPositionRepeat familyRepeat sub familyRepeat name
ADediting_804434chr2_112653849_+SINEAluName=AluSp
ADediting_804435chr2_112653870_+SINEAluName=AluSp
ADediting_804436chr2_112653896_+SINEAluName=AluSp
ADediting_804437chr2_112653897_+SINEAluName=AluSp
ADediting_804438chr2_112654044_+SINEAluName=AluSp
ADediting_804439chr2_112654068_+SINEAluName=AluSp
ADediting_804440chr2_112654633_+SINEAluName=AluSg4
ADediting_804441chr2_112654641_+SINEAluName=AluSg4
ADediting_804442chr2_112654642_+SINEAluName=AluSg4
ADediting_804443chr2_112654647_+SINEAluName=AluSg4
ADediting_804444chr2_112654685_+SINEAluName=AluSg4
ADediting_804445chr2_112654693_+SINEAluName=AluSg4
ADediting_804446chr2_112654694_+SINEAluName=AluSg4
ADediting_804447chr2_112654709_+SINEAluName=AluSg4
ADediting_804448chr2_112654718_+SINEAluName=AluSg4
ADediting_804449chr2_112654719_+SINEAluName=AluSg4
ADediting_804450chr2_112654724_+SINEAluName=AluSg4
ADediting_804451chr2_112654730_+SINEAluName=AluSg4
ADediting_804452chr2_112654733_+SINEAluName=AluSg4
ADediting_804453chr2_112654734_+SINEAluName=AluSg4
ADediting_804454chr2_112654735_+SINEAluName=AluSg4
ADediting_804455chr2_112654740_+SINEAluName=AluSg4
ADediting_804456chr2_112654744_+SINEAluName=AluSg4
ADediting_804457chr2_112654745_+SINEAluName=AluSg4
ADediting_804458chr2_112654746_+SINEAluName=AluSg4
ADediting_804459chr2_112654749_+SINEAluName=AluSg4
ADediting_804460chr2_112654750_+SINEAluName=AluSg4
ADediting_804461chr2_112654753_+SINEAluName=AluSg4
ADediting_804462chr2_112654759_+SINEAluName=AluSg4
ADediting_804463chr2_112654765_+SINEAluName=AluSg4
ADediting_804464chr2_112654776_+SINEAluName=AluSg4
ADediting_804465chr2_112654781_+SINEAluName=AluSg4
ADediting_804466chr2_112654785_+SINEAluName=AluSg4
ADediting_804467chr2_112654798_+SINEAluName=AluSg4
ADediting_804468chr2_112654802_+SINEAluName=AluSg4
ADediting_804469chr2_112654805_+SINEAluName=AluSg4
ADediting_804470chr2_112654808_+SINEAluName=AluSg4
ADediting_804471chr2_112654811_+SINEAluName=AluSg4
ADediting_804472chr2_112654816_+SINEAluName=AluSg4
ADediting_804473chr2_112654824_+SINEAluName=AluSg4
ADediting_804474chr2_112654837_+SINEAluName=AluSg4
ADediting_804475chr2_112654841_+SINEAluName=AluSg4
ADediting_804476chr2_112654845_+SINEAluName=AluSg4
ADediting_804477chr2_112654846_+SINEAluName=AluSg4
ADediting_804478chr2_112654856_+SINEAluName=AluSg4
ADediting_804479chr2_112654866_+SINEAluName=AluSg4
ADediting_804480chr2_112655008_+SINEAluName=AluSx
ADediting_804481chr2_112655033_+SINEAluName=AluSx
ADediting_804482chr2_112655049_+SINEAluName=AluSx
ADediting_804483chr2_112655073_+SINEAluName=AluSx
ADediting_804484chr2_112655086_+SINEAluName=AluSx
ADediting_804485chr2_112655124_+SINEAluName=AluSx
ADediting_804486chr2_112655130_+SINEAluName=AluSx
ADediting_804487chr2_112655134_+SINEAluName=AluSx
ADediting_804488chr2_112655135_+SINEAluName=AluSx
ADediting_804489chr2_112655149_+SINEAluName=AluSx
ADediting_804490chr2_112655152_+SINEAluName=AluSx
ADediting_804491chr2_112655166_+SINEAluName=AluSx
ADediting_804492chr2_112655191_+SINEAluName=AluSx
ADediting_804493chr2_112655197_+SINEAluName=AluSx
ADediting_804494chr2_112655221_+SINEAluName=AluSx
ADediting_804495chr2_112655231_+SINEAluName=AluSx
ADediting_804496chr2_112655243_+SINEAluName=AluSx
ADediting_804497chr2_112655245_+SINEAluName=AluSx
ADediting_804498chr2_112655252_+SINEAluName=AluSx
ADediting_804499chr2_112655953_+SINEAluName=AluSq2
ADediting_804500chr2_112656259_+SINEAluName=AluSx1
ADediting_804501chr2_112656260_+SINEAluName=AluSx1
ADediting_804502chr2_112656265_+SINEAluName=AluSx1
ADediting_804503chr2_112656276_+SINEAluName=AluSx1
ADediting_804504chr2_112656297_+SINEAluName=AluSx1
ADediting_804505chr2_112656301_+SINEAluName=AluSx1
ADediting_804506chr2_112656309_+SINEAluName=AluSx1
ADediting_804507chr2_112656314_+SINEAluName=AluSx1
ADediting_804508chr2_112656326_+SINEAluName=AluSx1
ADediting_804509chr2_112656336_+SINEAluName=AluSx1
ADediting_804510chr2_112656346_+SINEAluName=AluSx1
ADediting_804511chr2_112656362_+SINEAluName=AluSx1
ADediting_804512chr2_112656363_+SINEAluName=AluSx1
ADediting_804513chr2_112656381_+SINEAluName=AluSx1
ADediting_804514chr2_112656384_+SINEAluName=AluSx1
ADediting_804515chr2_112656463_+SINEAluName=AluSx1
ADediting_804516chr2_112656475_+SINEAluName=AluSx1
ADediting_804517chr2_112661553_+SINEAluName=AluSx1
ADediting_804518chr2_112661588_+SINEAluName=AluSx1
ADediting_804519chr2_112661610_+SINEAluName=AluSx1
ADediting_804520chr2_112661613_+SINEAluName=AluSx1
ADediting_804521chr2_112661629_+SINEAluName=AluSx1
ADediting_804522chr2_112661649_+SINEAluName=AluSx1
ADediting_804523chr2_112661675_+SINEAluName=AluSx1
ADediting_804524chr2_112661678_+SINEAluName=AluSx1
ADediting_804525chr2_112661701_+SINEAluName=AluSx1
ADediting_804526chr2_112661749_+SINEAluName=AluSx1
ADediting_804527chr2_112661759_+SINEAluName=AluSx1
ADediting_804528chr2_112661777_+SINEAluName=AluSx1
ADediting_804529chr2_112661810_+SINEAluName=AluSx1
ADediting_804530chr2_112661811_+SINEAluName=AluSx1
ADediting_804531chr2_112661817_+SINEAluName=AluSx1
ADediting_804532chr2_112661823_+SINEAluName=AluSx1
ADediting_804533chr2_112662304_+SINEAluName=AluSx3
ADediting_804534chr2_112662310_+SINEAluName=AluSx3
ADediting_804535chr2_112662327_+SINEAluName=AluSx3
ADediting_804536chr2_112662332_+SINEAluName=AluSx3
ADediting_804537chr2_112662365_+SINEAluName=AluSx3
ADediting_804538chr2_112662370_+SINEAluName=AluSx3
ADediting_804539chr2_112662373_+SINEAluName=AluSx3
ADediting_804540chr2_112662398_+SINEAluName=AluSx3
ADediting_804541chr2_112662409_+SINEAluName=AluSx3
ADediting_804542chr2_112662434_+SINEAluName=AluSx3
ADediting_804543chr2_112662501_+SINEAluName=AluSx3
ADediting_804544chr2_112662545_+SINEAluName=AluSx3
ADediting_1560500chr2_112651497_+SINEAluName=AluSc8
ADediting_1560501chr2_112651517_+SINEAluName=AluSc8
ADediting_1560502chr2_112651533_+SINEAluName=AluSc8
ADediting_1560503chr2_112653873_+SINEAluName=AluSp
ADediting_1560504chr2_112653893_+SINEAluName=AluSp
ADediting_1560505chr2_112653910_+SINEAluName=AluSp
ADediting_1560506chr2_112654066_+SINEAluName=AluSp
ADediting_1560507chr2_112654680_+SINEAluName=AluSg4
ADediting_1560508chr2_112654699_+SINEAluName=AluSg4
ADediting_1560509chr2_112655043_+SINEAluName=AluSx
ADediting_1560510chr2_112655098_+SINEAluName=AluSx
ADediting_1560511chr2_112655178_+SINEAluName=AluSx
ADediting_1560512chr2_112655786_+SINEAluName=AluSq2
ADediting_1560513chr2_112655875_+SINEAluName=AluSq2
ADediting_1632175chr2_112654792_+SINEAluName=AluSg4
ADediting_1632176chr2_112655817_+SINEAluName=AluSq2

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RNA A-to-I editing events in the alternative splicing sites for SLC20A1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeADeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SLC20A1

check button Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

check button Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.
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check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
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check button - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
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ADeditome IDChrPositoingSkipped exonENSGENSTs

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Protein coding region RNA A-to-I editings for SLC20A1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for SLC20A1


check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1337757chr7_5495852_-ENSG00000144136.11ENST00000272542.8SLC20A1-201hsa-miR-589-3pchr21126634001126634067mer-m8112663385112663407146-14.6

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_843620chr2_207754818_+ENSG00000144136.11ENST00000272542.8SLC20A1-201hsa-miR-4775chr21126632011126632077mer-m8112663187112663208140-7.82

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for SLC20A1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in miRNA.
ADeditom_IDENSTmir_IDEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in mRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in lncRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for SLC20A1

check button Correlation between ADAR gene expression and RNA editing frequency
TissueADeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
CERADediting_804434chr2_112653849_+0.0009073313015321570.2681604827436689.88579639495824e-060.3521794637578850.006956340476918540.219508425273064
CERADediting_804436chr2_112653896_+0.002370715887171710.2463874611560111.41206390836773e-050.3463804695792140.01443463242081360.19939449099402
CERADediting_804438chr2_112654044_+9.63863451203871e-090.4471946027424563.89469436987958e-090.4576967549516040.1005472396105360.134600687803388
CERADediting_804441chr2_112654641_+1.27673387309412e-070.4151349040561331.38074560205955e-060.3823045501928780.03564641620460320.17170115122824
DLPFCADediting_804442chr2_112654642_+8.16501520794354e-100.3397653149856719.47223099718495e-070.2741854122939073.65417977023978e-060.259503851102696
CERADediting_804442chr2_112654642_+7.92597710691146e-080.4213062698580816.6845254221767e-060.3584153160810490.1118129087249960.130366763937366
CERADediting_804443chr2_112654647_+7.08233019149451e-060.3575023191637062.61483172699004e-050.3360799110265640.2087033374934560.103234078515058
DLPFCADediting_804444chr2_112654685_+6.97585301474842e-080.3003473596438548.66653283184541e-050.2210639339650858.89964580614977e-080.2980130994077
CERADediting_804444chr2_112654685_+9.92456594537678e-050.312435528082730.0001244838197631280.3082159075869980.3414158527960790.0782143749248558
DLPFCADediting_804445chr2_112654693_+9.88922790001883e-060.2480825916475080.008824489171025090.1485109681768221.8604582246958e-120.386047063567015
CERADediting_804445chr2_112654693_+0.0005055105384521210.2805838144666950.0001605185405824210.303404275838380.6391695071452570.0385908462341064
DLPFCADediting_804447chr2_112654709_+5.16200807395456e-080.3032051927633982.22775529360971e-060.2649870860267634.60252467379473e-090.325106455305747
DLPFCADediting_804463chr2_112654765_+8.05570689360972e-050.2220280501803850.00300272612252440.1680193232942476.31346225715724e-110.360150471487263
DLPFCADediting_804468chr2_112654802_+0.4681078047872120.04135855065646840.047405858164284-0.1127035759984661.75502063832299e-280.573297359707645
DLPFCADediting_804480chr2_112655008_+6.80751443804318e-060.2524303429448880.02888136760971510.1241265647156294.90107632863905e-130.395281109941386
CERADediting_804481chr2_112655033_+0.001767538860821410.2532412621153882.25995733522508e-050.3385513608914080.652696345211528-0.037041194544843
CERADediting_804483chr2_112655073_+4.69519519025657e-090.4555592368009371.08177453977284e-080.4458311911872820.81613934306198-0.0191430336635512
CERADediting_804484chr2_112655086_+6.86013098660498e-100.4768809353267275.14315494021488e-090.4545118249479950.9821619762915610.00184096373046158
CERADediting_804487chr2_112655134_+8.04549576317047e-100.4751686295218151.22543651605017e-070.4156706328973390.2781075233276290.0891248323420247
DLPFCADediting_804488chr2_112655135_+0.0001221590627643150.216478508078280.02732530186608610.1253516517477281.26114346519435e-090.336152168031305
CERADediting_804488chr2_112655135_+2.11006005807698e-120.5333617978910312.79281992763456e-080.4343934253218680.04027682410974950.167670414444536
DLPFCADediting_804489chr2_112655149_+0.0002849784319378160.2047297370032170.1192638596180360.08866495989114117.28048850363981e-090.321085087310853
CERADediting_804489chr2_112655149_+7.45540565725081e-090.4502075368159077.9591093118744e-070.3902213192292560.07644033955551250.145107913065488
CERADediting_804490chr2_112655152_+3.08741203659251e-080.4331590370980595.32492010302564e-070.395869727026290.1601019955487660.115277215704775
CERADediting_804493chr2_112655197_+1.22173774593621e-070.4157100870811614.97426896992622e-080.4272198405438230.001065585323249090.264641048822893
DLPFCADediting_804494chr2_112655221_+1.31573362224212e-080.3158067493832796.33948563581583e-050.2251594128982110.0001759021747917360.211500194589872
CERADediting_804494chr2_112655221_+5.31845463939386e-120.5250025452119161.86673887718569e-070.4101271730435110.006116725138787490.222880762631514
CERADediting_804496chr2_112655243_+9.97345004931942e-070.3870040872920739.59823340421454e-070.3875533416157390.09226425239767770.137959129186051
CERADediting_804502chr2_112656265_+2.48597049696191e-050.3369386234448962.48330950131482e-070.406310546063240.02482613880799570.183208661715747
CERADediting_804507chr2_112656314_+0.005003946027513740.2280524635475370.0001000115364547320.3122933972548690.01748268191201670.193809767688741
CERADediting_804516chr2_112656475_+0.0001221331188043290.3085733995574623.78457521161032e-050.3297186869778860.01189138237714680.204907682442068
DLPFCADediting_804518chr2_112661588_+0.00278889695578070.1692825882968910.07699059301217880.1005910134466661.51002002438201e-130.403198784022636
DLPFCADediting_804519chr2_112661610_+0.0001977881433306560.2098742888801150.01206000284448010.1424279819610142.08446709812011e-160.444003594726542
DLPFCADediting_804520chr2_112661613_+0.002697043495391140.1698524706883030.03968605373124950.116901246633182.468814760297e-120.384050941679424
DLPFCADediting_804531chr2_112661817_+5.53721867333743e-050.226908655383920.01090510157997060.1444121818247142.67001668835423e-160.442565126241526

check button Correlation between ADAR gene expression and this gene's expression
TissueADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
DLPFC1.12825680019076e-850.8448786870545226.58154555203852e-1020.8805887965827230.2159565227004260.0704741460807823
AC1.35454135396731e-940.9060331436130722.39683715122158e-600.8136299643425391.2492070529155e-120.42925456561737
PCC2.85197825136609e-510.8365398035783014.2722887512083e-550.8523242221805670.1408174213770420.106960902555863
CER2.27878946619982e-300.7674269494709147.59556306104676e-150.5797823806777230.09179775961864750.138155285497364
TCX2.92941170857468e-410.8406792797219781.55980811827264e-230.7015165905054620.74151012338704-0.0271546772369608
FP3.9982026319967e-230.6543150422506875.4640025157902e-320.7388490569203380.4175186703143190.0611409293038782
IFG3.1395715878353e-060.7864873826972040.001086990315218450.6143199458041490.9370625759758190.0166435138818445
PG1.05766276098601e-460.82119870803446.87846602177074e-400.7835934489838610.0238856783970426-0.165606224560899
STG2.37975812310791e-200.8057984563950916.55771230975406e-220.8237458218453330.773672203392982-0.0318462081857435

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Relation with AD stages for SLC20A1

check button Correlation between AD stages and RNA editing frequency
TissueADeditomIDpositionP-valCoeff.

check button Correlation between AD stages and this gene's expression
TissueP-valCoeff.
STG0.00142661724234555-0.342514287878563

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RelatedDrugs for SLC20A1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for SLC20A1

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource
SLC20A1C0005944Metabolic Bone Disorder1CTD_human
SLC20A1C0014175Endometriosis1CTD_human
SLC20A1C0023893Liver Cirrhosis, Experimental1CTD_human
SLC20A1C0029453Osteopenia1CTD_human
SLC20A1C0269102Endometrioma1CTD_human
SLC20A1C0428791Aortic valve calcification1CTD_human