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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for NIPBL-DT |
 Gene summary |
| Gene information | Gene symbol | NIPBL-DT | Gene ID | 646719 |
| Gene name | NIPBL divergent transcript | |
| Synonyms | NIPBL-AS|NIPBL-AS1 | |
| Cytomap | 5p13.2 | |
| Type of gene | ncRNA | |
| Description | NIPBL antisense RNA 1 (head to head) | |
| Modification date | 20200313 | |
| UniProtAcc | ||
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for NIPBL-DT |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_1200314(36868326, -), ADediting_1200315(36868327, -), ADediting_1200316(36868362, -), ADediting_1200317(36868369, -), ADediting_1200318(36868375, -), ADediting_1200319(36868473, -), ADediting_1200320(36868508, -), ADediting_1200321(36868509, -), ADediting_1200322(36868517, -), ADediting_1200323(36868522, -), ADediting_1200324(36869000, -), ADediting_1200325(36869004, -), ADediting_1200326(36869005, -), ADediting_1200327(36872403, -), ADediting_1200328(36872458, -), ADediting_1200329(36872480, -), ADediting_1200330(36872483, -), ADediting_1200331(36872525, -), ADediting_1200332(36872538, -), ADediting_1200333(36872583, -), ADediting_1200334(36872599, -), ADediting_1200335(36872600, -), ADediting_1200336(36872608, -), ADediting_1581451(36865960, -), ADediting_1581452(36865982, -), ADediting_1581453(36867124, -), ADediting_1581454(36867143, -), ADediting_1581455(36867234, -), ADediting_1581456(36872535, -), |
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RNA editing positional annotations for NIPBL-DT using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_1200314 | chr5_36868326_- | ncRNA_intronic |
| ADediting_1200315 | chr5_36868327_- | ncRNA_intronic |
| ADediting_1200316 | chr5_36868362_- | ncRNA_intronic |
| ADediting_1200317 | chr5_36868369_- | ncRNA_intronic |
| ADediting_1200318 | chr5_36868375_- | ncRNA_intronic |
| ADediting_1200319 | chr5_36868473_- | ncRNA_intronic |
| ADediting_1200320 | chr5_36868508_- | ncRNA_intronic |
| ADediting_1200321 | chr5_36868509_- | ncRNA_intronic |
| ADediting_1200322 | chr5_36868517_- | ncRNA_intronic |
| ADediting_1200323 | chr5_36868522_- | ncRNA_intronic |
| ADediting_1200324 | chr5_36869000_- | ncRNA_intronic |
| ADediting_1200325 | chr5_36869004_- | ncRNA_intronic |
| ADediting_1200326 | chr5_36869005_- | ncRNA_intronic |
| ADediting_1200327 | chr5_36872403_- | ncRNA_exonic |
| ADediting_1200328 | chr5_36872458_- | ncRNA_exonic |
| ADediting_1200329 | chr5_36872480_- | ncRNA_exonic |
| ADediting_1200330 | chr5_36872483_- | ncRNA_exonic |
| ADediting_1200331 | chr5_36872525_- | ncRNA_exonic |
| ADediting_1200332 | chr5_36872538_- | ncRNA_exonic |
| ADediting_1200333 | chr5_36872583_- | ncRNA_exonic |
| ADediting_1200334 | chr5_36872599_- | ncRNA_exonic |
| ADediting_1200335 | chr5_36872600_- | ncRNA_exonic |
| ADediting_1200336 | chr5_36872608_- | ncRNA_exonic |
| ADediting_1581451 | chr5_36865960_- | ncRNA_exonic |
| ADediting_1581452 | chr5_36865982_- | ncRNA_exonic |
| ADediting_1581453 | chr5_36867124_- | ncRNA_exonic |
| ADediting_1581454 | chr5_36867143_- | ncRNA_exonic |
| ADediting_1581455 | chr5_36867234_- | ncRNA_exonic |
| ADediting_1581456 | chr5_36872535_- | ncRNA_exonic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_1200314 | chr5_36868326_- | SINE | Alu | Name=AluY |
| ADediting_1200315 | chr5_36868327_- | SINE | Alu | Name=AluY |
| ADediting_1200316 | chr5_36868362_- | SINE | Alu | Name=AluY |
| ADediting_1200317 | chr5_36868369_- | SINE | Alu | Name=AluY |
| ADediting_1200318 | chr5_36868375_- | SINE | Alu | Name=AluY |
| ADediting_1200319 | chr5_36868473_- | SINE | Alu | Name=AluY |
| ADediting_1200320 | chr5_36868508_- | SINE | Alu | Name=AluY |
| ADediting_1200321 | chr5_36868509_- | SINE | Alu | Name=AluY |
| ADediting_1200322 | chr5_36868517_- | SINE | Alu | Name=AluY |
| ADediting_1200323 | chr5_36868522_- | SINE | Alu | Name=AluY |
| ADediting_1200324 | chr5_36869000_- | SINE | Alu | Name=FLAM_C |
| ADediting_1200325 | chr5_36869004_- | SINE | Alu | Name=FLAM_C |
| ADediting_1200326 | chr5_36869005_- | SINE | Alu | Name=FLAM_C |
| ADediting_1200327 | chr5_36872403_- | SINE | Alu | Name=AluY |
| ADediting_1200328 | chr5_36872458_- | SINE | Alu | Name=AluY |
| ADediting_1200329 | chr5_36872480_- | SINE | Alu | Name=AluY |
| ADediting_1200330 | chr5_36872483_- | SINE | Alu | Name=AluY |
| ADediting_1200331 | chr5_36872525_- | SINE | Alu | Name=AluY |
| ADediting_1200332 | chr5_36872538_- | SINE | Alu | Name=AluY |
| ADediting_1200333 | chr5_36872583_- | SINE | Alu | Name=AluY |
| ADediting_1200334 | chr5_36872599_- | SINE | Alu | Name=AluY |
| ADediting_1200335 | chr5_36872600_- | SINE | Alu | Name=AluY |
| ADediting_1200336 | chr5_36872608_- | SINE | Alu | Name=AluY |
| ADediting_1581451 | chr5_36865960_- | SINE | Alu | Name=AluJr |
| ADediting_1581452 | chr5_36865982_- | SINE | Alu | Name=AluJr |
| ADediting_1581453 | chr5_36867124_- | SINE | Alu | Name=AluSz |
| ADediting_1581454 | chr5_36867143_- | SINE | Alu | Name=AluSz |
| ADediting_1581455 | chr5_36867234_- | SINE | Alu | Name=AluSz |
| ADediting_1581456 | chr5_36872535_- | SINE | Alu | Name=AluY |
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RNA A-to-I editing events in the alternative splicing sites for NIPBL-DT |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for NIPBL-DT |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |