|
||||||
|
 | |
| |
| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
| |
| |
| The effects of the RNA editing to the stability of the RNA structures |
| |
| |
| |
|
Gene summary for RGR |
 Gene summary |
| Gene information | Gene symbol | RGR | Gene ID | 5995 |
| Gene name | retinal G protein coupled receptor | |
| Synonyms | RP44 | |
| Cytomap | 10q23.1 | |
| Type of gene | protein-coding | |
| Description | RPE-retinal G protein-coupled receptorRGR-opsin | |
| Modification date | 20200313 | |
| UniProtAcc | P47804, Q8IZJ4, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
Top |
RNA A-to-I events for RGR |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA editing frequencies across three data sets. |
 |
| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA A-to-I editing events in AD. |
| ADediting_219942(84249341, +), ADediting_219943(84249515, +), ADediting_219944(84249585, +), ADediting_219945(84250836, +), ADediting_219946(84250890, +), ADediting_219947(84250979, +), ADediting_219948(84250980, +), ADediting_219949(84251049, +), ADediting_219950(84251051, +), ADediting_219951(84251079, +), ADediting_219952(84251096, +), ADediting_219953(84251114, +), ADediting_219954(84251115, +), ADediting_219955(84251170, +), ADediting_219956(84251565, +), ADediting_219957(84251566, +), ADediting_219958(84251593, +), ADediting_219959(84251596, +), ADediting_219960(84251606, +), ADediting_219961(84251614, +), ADediting_219962(84251624, +), ADediting_219963(84251625, +), ADediting_219964(84251648, +), ADediting_219965(84251661, +), ADediting_219966(84255628, +), ADediting_219967(84257457, +), ADediting_219968(84257463, +), |
Top |
RNA editing positional annotations for RGR using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_219942 | chr10_84249341_+ | intronic |
| ADediting_219943 | chr10_84249515_+ | intronic |
| ADediting_219944 | chr10_84249585_+ | intronic |
| ADediting_219945 | chr10_84250836_+ | intronic |
| ADediting_219946 | chr10_84250890_+ | intronic |
| ADediting_219947 | chr10_84250979_+ | intronic |
| ADediting_219948 | chr10_84250980_+ | intronic |
| ADediting_219949 | chr10_84251049_+ | intronic |
| ADediting_219950 | chr10_84251051_+ | intronic |
| ADediting_219951 | chr10_84251079_+ | intronic |
| ADediting_219952 | chr10_84251096_+ | intronic |
| ADediting_219953 | chr10_84251114_+ | intronic |
| ADediting_219954 | chr10_84251115_+ | intronic |
| ADediting_219955 | chr10_84251170_+ | intronic |
| ADediting_219956 | chr10_84251565_+ | intronic |
| ADediting_219957 | chr10_84251566_+ | intronic |
| ADediting_219958 | chr10_84251593_+ | intronic |
| ADediting_219959 | chr10_84251596_+ | intronic |
| ADediting_219960 | chr10_84251606_+ | intronic |
| ADediting_219961 | chr10_84251614_+ | intronic |
| ADediting_219962 | chr10_84251624_+ | intronic |
| ADediting_219963 | chr10_84251625_+ | intronic |
| ADediting_219964 | chr10_84251648_+ | intronic |
| ADediting_219965 | chr10_84251661_+ | intronic |
| ADediting_219966 | chr10_84255628_+ | intronic |
| ADediting_219967 | chr10_84257457_+ | intronic |
| ADediting_219968 | chr10_84257463_+ | intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_219942 | chr10_84249341_+ | SINE | Alu | Name=AluSx4 |
| ADediting_219943 | chr10_84249515_+ | SINE | Alu | Name=AluSx4 |
| ADediting_219944 | chr10_84249585_+ | SINE | Alu | Name=AluSx4 |
| ADediting_219945 | chr10_84250836_+ | SINE | Alu | Name=AluSg7 |
| ADediting_219946 | chr10_84250890_+ | SINE | Alu | Name=AluSg7 |
| ADediting_219947 | chr10_84250979_+ | SINE | Alu | Name=AluSz |
| ADediting_219948 | chr10_84250980_+ | SINE | Alu | Name=AluSz |
| ADediting_219949 | chr10_84251049_+ | SINE | Alu | Name=AluSz |
| ADediting_219950 | chr10_84251051_+ | SINE | Alu | Name=AluSz |
| ADediting_219951 | chr10_84251079_+ | SINE | Alu | Name=AluSz |
| ADediting_219952 | chr10_84251096_+ | SINE | Alu | Name=AluSz |
| ADediting_219953 | chr10_84251114_+ | SINE | Alu | Name=AluSz |
| ADediting_219954 | chr10_84251115_+ | SINE | Alu | Name=AluSz |
| ADediting_219955 | chr10_84251170_+ | SINE | Alu | Name=AluSz |
| ADediting_219956 | chr10_84251565_+ | SINE | Alu | Name=AluSc8 |
| ADediting_219957 | chr10_84251566_+ | SINE | Alu | Name=AluSc8 |
| ADediting_219958 | chr10_84251593_+ | SINE | Alu | Name=AluSc8 |
| ADediting_219959 | chr10_84251596_+ | SINE | Alu | Name=AluSc8 |
| ADediting_219960 | chr10_84251606_+ | SINE | Alu | Name=AluSc8 |
| ADediting_219961 | chr10_84251614_+ | SINE | Alu | Name=AluSc8 |
| ADediting_219962 | chr10_84251624_+ | SINE | Alu | Name=AluSc8 |
| ADediting_219963 | chr10_84251625_+ | SINE | Alu | Name=AluSc8 |
| ADediting_219964 | chr10_84251648_+ | SINE | Alu | Name=AluSc8 |
| ADediting_219965 | chr10_84251661_+ | SINE | Alu | Name=AluSc8 |
| ADediting_219967 | chr10_84257457_+ | SINE | Alu | Name=AluJo |
| ADediting_219968 | chr10_84257463_+ | SINE | Alu | Name=AluJo |
Top |
RNA A-to-I editing events in the alternative splicing sites for RGR |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for RGR |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
 | |
 | |
 | |
 | |
 | |
 | |
 | |
 | |
 | |
 | |
 | |
 | |
 | |
 | |
 | |
 | |
| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |