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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for RRAGD |
 Gene summary |
| Gene information | Gene symbol | RRAGD | Gene ID | 58528 |
| Gene name | Ras related GTP binding D | |
| Synonyms | RAGD|bA11D8.2.1 | |
| Cytomap | 6q15 | |
| Type of gene | protein-coding | |
| Description | ras-related GTP-binding protein DRag D protein | |
| Modification date | 20200313 | |
| UniProtAcc | Q9NQL2, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for RRAGD |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_1281384(89366271, -), ADediting_1281385(89366282, -), ADediting_1281386(89366283, -), ADediting_1281387(89366325, -), ADediting_1281388(89366335, -), ADediting_1281389(89366336, -), ADediting_1281390(89366356, -), ADediting_1281391(89366408, -), ADediting_1281392(89366410, -), ADediting_1281393(89366416, -), ADediting_1281394(89366420, -), ADediting_1281395(89366423, -), ADediting_1281396(89366432, -), ADediting_1281397(89366437, -), ADediting_1281398(89366449, -), ADediting_1281399(89366474, -), ADediting_1281400(89366479, -), ADediting_1281401(89366482, -), ADediting_1281402(89366490, -), ADediting_1281403(89366492, -), ADediting_1281404(89366523, -), ADediting_1281405(89380718, -), ADediting_1281406(89384020, -), ADediting_1281407(89384046, -), ADediting_1281408(89384088, -), ADediting_1281409(89384412, -), ADediting_1281410(89384416, -), ADediting_1281411(89384417, -), ADediting_1281412(89384558, -), ADediting_1281413(89384572, -), ADediting_1281414(89384994, -), ADediting_1281415(89395014, -), ADediting_1281416(89395022, -), ADediting_1281417(89395197, -), ADediting_1281418(89395213, -), ADediting_1281419(89395215, -), ADediting_1281420(89395221, -), ADediting_1281421(89396537, -), ADediting_1281422(89396692, -), ADediting_1281423(89396853, -), ADediting_1281424(89396866, -), ADediting_1281425(89396880, -), ADediting_1281426(89401386, -), ADediting_1281427(89401406, -), ADediting_1281428(89401422, -), ADediting_1281429(89401449, -), ADediting_1281430(89401474, -), ADediting_1281431(89402102, -), ADediting_1281432(89402185, -), ADediting_1281433(89402186, -), ADediting_1281434(89402218, -), ADediting_1281435(89403197, -), ADediting_1281436(89403198, -), ADediting_1281437(89403207, -), ADediting_1281438(89403256, -), ADediting_1281439(89403323, -), ADediting_1281440(89403333, -), ADediting_1281441(89403358, -), ADediting_1281442(89403382, -), ADediting_1281443(89403743, -), ADediting_1281444(89403773, -), ADediting_1281445(89403801, -), ADediting_1281446(89403877, -), ADediting_1281447(89403909, -), ADediting_1584732(89366397, -), ADediting_1584733(89366512, -), ADediting_1584734(89369501, -), ADediting_1584735(89369529, -), ADediting_1584736(89369546, -), ADediting_1584737(89369604, -), ADediting_1584738(89369623, -), ADediting_1584739(89369624, -), ADediting_1584740(89369654, -), ADediting_1584741(89369656, -), ADediting_1584742(89369672, -), ADediting_1584743(89369680, -), ADediting_1584744(89371286, -), ADediting_1584745(89371373, -), ADediting_1584746(89380651, -), ADediting_1584747(89380850, -), ADediting_1584748(89382523, -), ADediting_1584749(89384021, -), ADediting_1584750(89384390, -), ADediting_1584751(89384396, -), ADediting_1584752(89384436, -), ADediting_1584753(89384442, -), ADediting_1584754(89384481, -), ADediting_1584755(89384482, -), ADediting_1584756(89384484, -), ADediting_1584757(89384787, -), ADediting_1584758(89384992, -), ADediting_1662966(89366480, -), ADediting_1662967(89366525, -), |
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RNA editing positional annotations for RRAGD using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_1281384 | chr6_89366271_- | UTR3 |
| ADediting_1281385 | chr6_89366282_- | UTR3 |
| ADediting_1281386 | chr6_89366283_- | UTR3 |
| ADediting_1281387 | chr6_89366325_- | UTR3 |
| ADediting_1281388 | chr6_89366335_- | UTR3 |
| ADediting_1281389 | chr6_89366336_- | UTR3 |
| ADediting_1281390 | chr6_89366356_- | UTR3 |
| ADediting_1281391 | chr6_89366408_- | UTR3 |
| ADediting_1281392 | chr6_89366410_- | UTR3 |
| ADediting_1281393 | chr6_89366416_- | UTR3 |
| ADediting_1281394 | chr6_89366420_- | UTR3 |
| ADediting_1281395 | chr6_89366423_- | UTR3 |
| ADediting_1281396 | chr6_89366432_- | UTR3 |
| ADediting_1281397 | chr6_89366437_- | UTR3 |
| ADediting_1281398 | chr6_89366449_- | UTR3 |
| ADediting_1281399 | chr6_89366474_- | UTR3 |
| ADediting_1281400 | chr6_89366479_- | UTR3 |
| ADediting_1281401 | chr6_89366482_- | UTR3 |
| ADediting_1281402 | chr6_89366490_- | UTR3 |
| ADediting_1281403 | chr6_89366492_- | UTR3 |
| ADediting_1281404 | chr6_89366523_- | UTR3 |
| ADediting_1281405 | chr6_89380718_- | intronic |
| ADediting_1281406 | chr6_89384020_- | intronic |
| ADediting_1281407 | chr6_89384046_- | intronic |
| ADediting_1281408 | chr6_89384088_- | intronic |
| ADediting_1281409 | chr6_89384412_- | intronic |
| ADediting_1281410 | chr6_89384416_- | intronic |
| ADediting_1281411 | chr6_89384417_- | intronic |
| ADediting_1281412 | chr6_89384558_- | intronic |
| ADediting_1281413 | chr6_89384572_- | intronic |
| ADediting_1281414 | chr6_89384994_- | intronic |
| ADediting_1281415 | chr6_89395014_- | intronic |
| ADediting_1281416 | chr6_89395022_- | intronic |
| ADediting_1281417 | chr6_89395197_- | intronic |
| ADediting_1281418 | chr6_89395213_- | intronic |
| ADediting_1281419 | chr6_89395215_- | intronic |
| ADediting_1281420 | chr6_89395221_- | intronic |
| ADediting_1281421 | chr6_89396537_- | intronic |
| ADediting_1281422 | chr6_89396692_- | intronic |
| ADediting_1281423 | chr6_89396853_- | intronic |
| ADediting_1281424 | chr6_89396866_- | intronic |
| ADediting_1281425 | chr6_89396880_- | intronic |
| ADediting_1281426 | chr6_89401386_- | intronic |
| ADediting_1281427 | chr6_89401406_- | intronic |
| ADediting_1281428 | chr6_89401422_- | intronic |
| ADediting_1281429 | chr6_89401449_- | intronic |
| ADediting_1281430 | chr6_89401474_- | intronic |
| ADediting_1281431 | chr6_89402102_- | intronic |
| ADediting_1281432 | chr6_89402185_- | intronic |
| ADediting_1281433 | chr6_89402186_- | intronic |
| ADediting_1281434 | chr6_89402218_- | intronic |
| ADediting_1281435 | chr6_89403197_- | intronic |
| ADediting_1281436 | chr6_89403198_- | intronic |
| ADediting_1281437 | chr6_89403207_- | intronic |
| ADediting_1281438 | chr6_89403256_- | intronic |
| ADediting_1281439 | chr6_89403323_- | intronic |
| ADediting_1281440 | chr6_89403333_- | intronic |
| ADediting_1281441 | chr6_89403358_- | intronic |
| ADediting_1281442 | chr6_89403382_- | intronic |
| ADediting_1281443 | chr6_89403743_- | intronic |
| ADediting_1281444 | chr6_89403773_- | intronic |
| ADediting_1281445 | chr6_89403801_- | intronic |
| ADediting_1281446 | chr6_89403877_- | intronic |
| ADediting_1281447 | chr6_89403909_- | intronic |
| ADediting_1584732 | chr6_89366397_- | UTR3 |
| ADediting_1584733 | chr6_89366512_- | UTR3 |
| ADediting_1584734 | chr6_89369501_- | intronic |
| ADediting_1584735 | chr6_89369529_- | intronic |
| ADediting_1584736 | chr6_89369546_- | intronic |
| ADediting_1584737 | chr6_89369604_- | intronic |
| ADediting_1584738 | chr6_89369623_- | intronic |
| ADediting_1584739 | chr6_89369624_- | intronic |
| ADediting_1584740 | chr6_89369654_- | intronic |
| ADediting_1584741 | chr6_89369656_- | intronic |
| ADediting_1584742 | chr6_89369672_- | intronic |
| ADediting_1584743 | chr6_89369680_- | intronic |
| ADediting_1584744 | chr6_89371286_- | intronic |
| ADediting_1584745 | chr6_89371373_- | intronic |
| ADediting_1584746 | chr6_89380651_- | intronic |
| ADediting_1584747 | chr6_89380850_- | intronic |
| ADediting_1584748 | chr6_89382523_- | intronic |
| ADediting_1584749 | chr6_89384021_- | intronic |
| ADediting_1584750 | chr6_89384390_- | intronic |
| ADediting_1584751 | chr6_89384396_- | intronic |
| ADediting_1584752 | chr6_89384436_- | intronic |
| ADediting_1584753 | chr6_89384442_- | intronic |
| ADediting_1584754 | chr6_89384481_- | intronic |
| ADediting_1584755 | chr6_89384482_- | intronic |
| ADediting_1584756 | chr6_89384484_- | intronic |
| ADediting_1584757 | chr6_89384787_- | intronic |
| ADediting_1584758 | chr6_89384992_- | intronic |
| ADediting_1662966 | chr6_89366480_- | UTR3 |
| ADediting_1662967 | chr6_89366525_- | UTR3 |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_1281384 | chr6_89366271_- | SINE | Alu | Name=AluJr4 |
| ADediting_1281385 | chr6_89366282_- | SINE | Alu | Name=AluJr4 |
| ADediting_1281386 | chr6_89366283_- | SINE | Alu | Name=AluJr4 |
| ADediting_1281387 | chr6_89366325_- | SINE | Alu | Name=AluJr4 |
| ADediting_1281388 | chr6_89366335_- | SINE | Alu | Name=AluJr4 |
| ADediting_1281389 | chr6_89366336_- | SINE | Alu | Name=AluJr4 |
| ADediting_1281390 | chr6_89366356_- | SINE | Alu | Name=AluJr4 |
| ADediting_1281391 | chr6_89366408_- | SINE | Alu | Name=AluJr4 |
| ADediting_1281392 | chr6_89366410_- | SINE | Alu | Name=AluJr4 |
| ADediting_1281393 | chr6_89366416_- | SINE | Alu | Name=AluJr4 |
| ADediting_1281394 | chr6_89366420_- | SINE | Alu | Name=AluJr4 |
| ADediting_1281395 | chr6_89366423_- | SINE | Alu | Name=AluJr4 |
| ADediting_1281396 | chr6_89366432_- | SINE | Alu | Name=AluJr4 |
| ADediting_1281397 | chr6_89366437_- | SINE | Alu | Name=AluJr4 |
| ADediting_1281398 | chr6_89366449_- | SINE | Alu | Name=AluJr4 |
| ADediting_1281399 | chr6_89366474_- | SINE | Alu | Name=AluJr4 |
| ADediting_1281400 | chr6_89366479_- | SINE | Alu | Name=AluJr4 |
| ADediting_1281401 | chr6_89366482_- | SINE | Alu | Name=AluJr4 |
| ADediting_1281402 | chr6_89366490_- | SINE | Alu | Name=AluJr4 |
| ADediting_1281403 | chr6_89366492_- | SINE | Alu | Name=AluJr4 |
| ADediting_1281404 | chr6_89366523_- | SINE | Alu | Name=AluJr4 |
| ADediting_1281405 | chr6_89380718_- | SINE | Alu | Name=AluSc8 |
| ADediting_1281406 | chr6_89384020_- | SINE | Alu | Name=AluSc |
| ADediting_1281407 | chr6_89384046_- | SINE | Alu | Name=AluSc |
| ADediting_1281408 | chr6_89384088_- | SINE | Alu | Name=AluSc |
| ADediting_1281409 | chr6_89384412_- | SINE | Alu | Name=FRAM |
| ADediting_1281410 | chr6_89384416_- | SINE | Alu | Name=FRAM |
| ADediting_1281411 | chr6_89384417_- | SINE | Alu | Name=FRAM |
| ADediting_1281412 | chr6_89384558_- | SINE | Alu | Name=AluY |
| ADediting_1281413 | chr6_89384572_- | SINE | Alu | Name=AluY |
| ADediting_1281414 | chr6_89384994_- | SINE | Alu | Name=AluJo |
| ADediting_1281415 | chr6_89395014_- | SINE | Alu | Name=AluJr |
| ADediting_1281416 | chr6_89395022_- | SINE | Alu | Name=AluJr |
| ADediting_1281417 | chr6_89395197_- | SINE | Alu | Name=AluJr |
| ADediting_1281418 | chr6_89395213_- | SINE | Alu | Name=AluJr |
| ADediting_1281419 | chr6_89395215_- | SINE | Alu | Name=AluJr |
| ADediting_1281420 | chr6_89395221_- | SINE | Alu | Name=AluJr |
| ADediting_1281421 | chr6_89396537_- | SINE | Alu | Name=AluJb |
| ADediting_1281422 | chr6_89396692_- | SINE | Alu | Name=AluJb |
| ADediting_1281423 | chr6_89396853_- | SINE | Alu | Name=AluSz |
| ADediting_1281424 | chr6_89396866_- | SINE | Alu | Name=AluSz |
| ADediting_1281425 | chr6_89396880_- | SINE | Alu | Name=AluSz |
| ADediting_1281426 | chr6_89401386_- | SINE | Alu | Name=AluSx1 |
| ADediting_1281427 | chr6_89401406_- | SINE | Alu | Name=AluSx1 |
| ADediting_1281428 | chr6_89401422_- | SINE | Alu | Name=AluSx1 |
| ADediting_1281429 | chr6_89401449_- | SINE | Alu | Name=AluSx1 |
| ADediting_1281430 | chr6_89401474_- | SINE | Alu | Name=AluSx1 |
| ADediting_1281431 | chr6_89402102_- | SINE | Alu | Name=AluSg |
| ADediting_1281432 | chr6_89402185_- | SINE | Alu | Name=AluSg |
| ADediting_1281433 | chr6_89402186_- | SINE | Alu | Name=AluSg |
| ADediting_1281434 | chr6_89402218_- | SINE | Alu | Name=AluSg |
| ADediting_1281435 | chr6_89403197_- | SINE | Alu | Name=AluY |
| ADediting_1281436 | chr6_89403198_- | SINE | Alu | Name=AluY |
| ADediting_1281437 | chr6_89403207_- | SINE | Alu | Name=AluY |
| ADediting_1281438 | chr6_89403256_- | SINE | Alu | Name=AluY |
| ADediting_1281439 | chr6_89403323_- | SINE | Alu | Name=AluY |
| ADediting_1281440 | chr6_89403333_- | SINE | Alu | Name=AluY |
| ADediting_1281441 | chr6_89403358_- | SINE | Alu | Name=AluY |
| ADediting_1281442 | chr6_89403382_- | SINE | Alu | Name=AluY |
| ADediting_1281443 | chr6_89403743_- | SINE | Alu | Name=AluJo |
| ADediting_1281444 | chr6_89403773_- | SINE | Alu | Name=AluJo |
| ADediting_1281445 | chr6_89403801_- | SINE | Alu | Name=AluJo |
| ADediting_1281446 | chr6_89403877_- | SINE | Alu | Name=AluJo |
| ADediting_1281447 | chr6_89403909_- | SINE | Alu | Name=AluJo |
| ADediting_1584732 | chr6_89366397_- | SINE | Alu | Name=AluJr4 |
| ADediting_1584733 | chr6_89366512_- | SINE | Alu | Name=AluJr4 |
| ADediting_1584734 | chr6_89369501_- | SINE | Alu | Name=AluJo |
| ADediting_1584735 | chr6_89369529_- | SINE | Alu | Name=AluJo |
| ADediting_1584736 | chr6_89369546_- | SINE | Alu | Name=AluJo |
| ADediting_1584737 | chr6_89369604_- | SINE | Alu | Name=AluJo |
| ADediting_1584738 | chr6_89369623_- | SINE | Alu | Name=AluJo |
| ADediting_1584739 | chr6_89369624_- | SINE | Alu | Name=AluJo |
| ADediting_1584740 | chr6_89369654_- | SINE | Alu | Name=AluJo |
| ADediting_1584741 | chr6_89369656_- | SINE | Alu | Name=AluJo |
| ADediting_1584742 | chr6_89369672_- | SINE | Alu | Name=AluJo |
| ADediting_1584743 | chr6_89369680_- | SINE | Alu | Name=AluJo |
| ADediting_1584744 | chr6_89371286_- | SINE | Alu | Name=AluJb |
| ADediting_1584745 | chr6_89371373_- | SINE | Alu | Name=AluJb |
| ADediting_1584746 | chr6_89380651_- | SINE | Alu | Name=AluSc8 |
| ADediting_1584747 | chr6_89380850_- | SINE | Alu | Name=AluSc8 |
| ADediting_1584748 | chr6_89382523_- | SINE | Alu | Name=AluJr4 |
| ADediting_1584749 | chr6_89384021_- | SINE | Alu | Name=AluSc |
| ADediting_1584750 | chr6_89384390_- | SINE | Alu | Name=FRAM |
| ADediting_1584751 | chr6_89384396_- | SINE | Alu | Name=FRAM |
| ADediting_1584752 | chr6_89384436_- | SINE | Alu | Name=FRAM |
| ADediting_1584753 | chr6_89384442_- | SINE | Alu | Name=FRAM |
| ADediting_1584754 | chr6_89384481_- | SINE | Alu | Name=FRAM |
| ADediting_1584755 | chr6_89384482_- | SINE | Alu | Name=FRAM |
| ADediting_1584756 | chr6_89384484_- | SINE | Alu | Name=FRAM |
| ADediting_1584757 | chr6_89384787_- | SINE | Alu | Name=AluY |
| ADediting_1584758 | chr6_89384992_- | SINE | Alu | Name=AluJo |
| ADediting_1662966 | chr6_89366480_- | SINE | Alu | Name=AluJr4 |
| ADediting_1662967 | chr6_89366525_- | SINE | Alu | Name=AluJr4 |
Top |
RNA A-to-I editing events in the alternative splicing sites for RRAGD |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RRAGD |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |