|
||||||
|
 | |
| |
| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
| |
| |
| The effects of the RNA editing to the stability of the RNA structures |
| |
| |
| |
|
Gene summary for PURB |
 Gene summary |
| Gene information | Gene symbol | PURB | Gene ID | 5814 |
| Gene name | purine rich element binding protein B | |
| Synonyms | PURBETA | |
| Cytomap | 7p13 | |
| Type of gene | protein-coding | |
| Description | transcriptional activator protein Pur-beta | |
| Modification date | 20200313 | |
| UniProtAcc | Q96QR8, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
Top |
RNA A-to-I events for PURB |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA editing frequencies across three data sets. |
 |
| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA A-to-I editing events in AD. |
| ADediting_1333992(44877546, -), ADediting_1333993(44877557, -), ADediting_1333994(44877558, -), ADediting_1333995(44877559, -), ADediting_1333996(44877637, -), ADediting_1333997(44877640, -), ADediting_1333998(44877646, -), ADediting_1333999(44877660, -), ADediting_1334000(44877679, -), ADediting_1334001(44877680, -), ADediting_1334002(44877682, -), ADediting_1334003(44877692, -), ADediting_1334004(44877695, -), ADediting_1334005(44877717, -), ADediting_1334006(44877721, -), ADediting_1334007(44877741, -), ADediting_1334008(44877752, -), ADediting_1334009(44877807, -), ADediting_1334010(44879071, -), ADediting_1334011(44879073, -), ADediting_1334012(44879109, -), ADediting_1334013(44879129, -), ADediting_1334014(44879137, -), ADediting_1334015(44879169, -), ADediting_1334016(44879173, -), ADediting_1334017(44879179, -), ADediting_1334018(44879205, -), ADediting_1334019(44879214, -), ADediting_1334020(44879244, -), ADediting_1334021(44879294, -), ADediting_1334022(44879299, -), ADediting_1334023(44879300, -), ADediting_1334024(44880792, -), ADediting_1334025(44881040, -), ADediting_1587637(44877540, -), ADediting_1587638(44877722, -), ADediting_1587639(44879223, -), ADediting_1587640(44879234, -), ADediting_1587641(44879235, -), ADediting_1587642(44879236, -), |
Top |
RNA editing positional annotations for PURB using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_1333992 | chr7_44877546_- | UTR3 |
| ADediting_1333993 | chr7_44877557_- | UTR3 |
| ADediting_1333994 | chr7_44877558_- | UTR3 |
| ADediting_1333995 | chr7_44877559_- | UTR3 |
| ADediting_1333996 | chr7_44877637_- | UTR3 |
| ADediting_1333997 | chr7_44877640_- | UTR3 |
| ADediting_1333998 | chr7_44877646_- | UTR3 |
| ADediting_1333999 | chr7_44877660_- | UTR3 |
| ADediting_1334000 | chr7_44877679_- | UTR3 |
| ADediting_1334001 | chr7_44877680_- | UTR3 |
| ADediting_1334002 | chr7_44877682_- | UTR3 |
| ADediting_1334003 | chr7_44877692_- | UTR3 |
| ADediting_1334004 | chr7_44877695_- | UTR3 |
| ADediting_1334005 | chr7_44877717_- | UTR3 |
| ADediting_1334006 | chr7_44877721_- | UTR3 |
| ADediting_1334007 | chr7_44877741_- | UTR3 |
| ADediting_1334008 | chr7_44877752_- | UTR3 |
| ADediting_1334009 | chr7_44877807_- | UTR3 |
| ADediting_1334010 | chr7_44879071_- | UTR3 |
| ADediting_1334011 | chr7_44879073_- | UTR3 |
| ADediting_1334012 | chr7_44879109_- | UTR3 |
| ADediting_1334013 | chr7_44879129_- | UTR3 |
| ADediting_1334014 | chr7_44879137_- | UTR3 |
| ADediting_1334015 | chr7_44879169_- | UTR3 |
| ADediting_1334016 | chr7_44879173_- | UTR3 |
| ADediting_1334017 | chr7_44879179_- | UTR3 |
| ADediting_1334018 | chr7_44879205_- | UTR3 |
| ADediting_1334019 | chr7_44879214_- | UTR3 |
| ADediting_1334020 | chr7_44879244_- | UTR3 |
| ADediting_1334021 | chr7_44879294_- | UTR3 |
| ADediting_1334022 | chr7_44879299_- | UTR3 |
| ADediting_1334023 | chr7_44879300_- | UTR3 |
| ADediting_1334024 | chr7_44880792_- | UTR3 |
| ADediting_1334025 | chr7_44881040_- | UTR3 |
| ADediting_1587637 | chr7_44877540_- | UTR3 |
| ADediting_1587638 | chr7_44877722_- | UTR3 |
| ADediting_1587639 | chr7_44879223_- | UTR3 |
| ADediting_1587640 | chr7_44879234_- | UTR3 |
| ADediting_1587641 | chr7_44879235_- | UTR3 |
| ADediting_1587642 | chr7_44879236_- | UTR3 |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_1333992 | chr7_44877546_- | SINE | Alu | Name=AluSz |
| ADediting_1333993 | chr7_44877557_- | SINE | Alu | Name=AluSz |
| ADediting_1333994 | chr7_44877558_- | SINE | Alu | Name=AluSz |
| ADediting_1333995 | chr7_44877559_- | SINE | Alu | Name=AluSz |
| ADediting_1333996 | chr7_44877637_- | SINE | Alu | Name=AluSz |
| ADediting_1333997 | chr7_44877640_- | SINE | Alu | Name=AluSz |
| ADediting_1333998 | chr7_44877646_- | SINE | Alu | Name=AluSz |
| ADediting_1333999 | chr7_44877660_- | SINE | Alu | Name=AluSz |
| ADediting_1334000 | chr7_44877679_- | SINE | Alu | Name=AluSz |
| ADediting_1334001 | chr7_44877680_- | SINE | Alu | Name=AluSz |
| ADediting_1334002 | chr7_44877682_- | SINE | Alu | Name=AluSz |
| ADediting_1334003 | chr7_44877692_- | SINE | Alu | Name=AluSz |
| ADediting_1334004 | chr7_44877695_- | SINE | Alu | Name=AluSz |
| ADediting_1334005 | chr7_44877717_- | SINE | Alu | Name=AluSz |
| ADediting_1334006 | chr7_44877721_- | SINE | Alu | Name=AluSz |
| ADediting_1334007 | chr7_44877741_- | SINE | Alu | Name=AluSz |
| ADediting_1334008 | chr7_44877752_- | SINE | Alu | Name=AluSz |
| ADediting_1334009 | chr7_44877807_- | SINE | Alu | Name=AluSz |
| ADediting_1334010 | chr7_44879071_- | SINE | Alu | Name=AluSg |
| ADediting_1334011 | chr7_44879073_- | SINE | Alu | Name=AluSg |
| ADediting_1334012 | chr7_44879109_- | SINE | Alu | Name=AluSg |
| ADediting_1334013 | chr7_44879129_- | SINE | Alu | Name=AluSg |
| ADediting_1334014 | chr7_44879137_- | SINE | Alu | Name=AluSg |
| ADediting_1334015 | chr7_44879169_- | SINE | Alu | Name=AluSg |
| ADediting_1334016 | chr7_44879173_- | SINE | Alu | Name=AluSg |
| ADediting_1334017 | chr7_44879179_- | SINE | Alu | Name=AluSg |
| ADediting_1334018 | chr7_44879205_- | SINE | Alu | Name=AluSg |
| ADediting_1334019 | chr7_44879214_- | SINE | Alu | Name=AluSg |
| ADediting_1334020 | chr7_44879244_- | SINE | Alu | Name=AluSg |
| ADediting_1334021 | chr7_44879294_- | SINE | Alu | Name=AluSg |
| ADediting_1334022 | chr7_44879299_- | SINE | Alu | Name=AluSg |
| ADediting_1334023 | chr7_44879300_- | SINE | Alu | Name=AluSg |
| ADediting_1587637 | chr7_44877540_- | SINE | Alu | Name=AluSz |
| ADediting_1587638 | chr7_44877722_- | SINE | Alu | Name=AluSz |
| ADediting_1587639 | chr7_44879223_- | SINE | Alu | Name=AluSg |
| ADediting_1587640 | chr7_44879234_- | SINE | Alu | Name=AluSg |
| ADediting_1587641 | chr7_44879235_- | SINE | Alu | Name=AluSg |
| ADediting_1587642 | chr7_44879236_- | SINE | Alu | Name=AluSg |
Top |
RNA A-to-I editing events in the alternative splicing sites for PURB |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for PURB |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
 | |
| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
 |
 |
| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
 |
 |
| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
Top |
Protein coding region RNA A-to-I editings for PURB |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
Top |
The effects of the RNA editing to the miRNA binding sites for PURB |
| RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. |
 |
| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1333993 | chr7_44877557_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-383-3p | chr7 | 44877552 | 44877558 | 7mer-m8 | 44877551 | 44877569 | 140 | -16.64 |
| ADediting_1333995 | chr7_44877559_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-204-3p | chr7 | 44877558 | 44877565 | 8mer-1a | 44877558 | 44877577 | 150 | -21.04 |
| ADediting_1333995 | chr7_44877559_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-3192-5p | chr7 | 44877558 | 44877564 | 7mer-1a | 44877558 | 44877580 | 146 | -28.4 |
| ADediting_1333995 | chr7_44877559_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-4314 | chr7 | 44877557 | 44877564 | 8mer-1a | 44877557 | 44877575 | 151 | -16.77 |
| ADediting_1333995 | chr7_44877559_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-4646-5p | chr7 | 44877558 | 44877565 | 8mer-1a | 44877558 | 44877579 | 159 | -27.87 |
| ADediting_1334000 | chr7_44877679_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-6514-3p | chr7 | 44877676 | 44877682 | 7mer-m8 | 44877675 | 44877696 | 158 | -19.13 |
| ADediting_1334002 | chr7_44877682_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-4327 | chr7 | 44877676 | 44877683 | 8mer-1a | 44877676 | 44877694 | 140 | -13.38 |
| ADediting_1334003 | chr7_44877692_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-3614-5p | chr7 | 44877692 | 44877698 | 7mer-m8 | 44877691 | 44877714 | 152 | -25.27 |
| ADediting_1334003 | chr7_44877692_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-4691-3p | chr7 | 44877688 | 44877694 | 7mer-m8 | 44877687 | 44877714 | 150 | -26.36 |
| ADediting_1334005 | chr7_44877717_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-589-5p | chr7 | 44877712 | 44877718 | 7mer-m8 | 44877711 | 44877732 | 156 | -16.87 |
| ADediting_1334006 | chr7_44877721_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-6078 | chr7 | 44877717 | 44877724 | 8mer-1a | 44877717 | 44877735 | 153 | -23.01 |
| ADediting_1334006 | chr7_44877721_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-6751-3p | chr7 | 44877721 | 44877727 | 7mer-m8 | 44877720 | 44877740 | 141 | -13.02 |
| ADediting_1334007 | chr7_44877741_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-17-3p | chr7 | 44877741 | 44877747 | 7mer-m8 | 44877740 | 44877761 | 150 | -16.39 |
| ADediting_1334008 | chr7_44877752_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-4537 | chr7 | 44877747 | 44877754 | 8mer-1a | 44877747 | 44877769 | 155 | -24.32 |
| ADediting_1334011 | chr7_44879073_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-5691 | chr7 | 44879070 | 44879077 | 8mer-1a | 44879070 | 44879091 | 145 | -18.94 |
| ADediting_1334011 | chr7_44879073_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-6805-3p | chr7 | 44879070 | 44879077 | 8mer-1a | 44879070 | 44879092 | 158 | -21.15 |
| ADediting_1334012 | chr7_44879109_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-4638-5p | chr7 | 44879106 | 44879113 | 8mer-1a | 44879106 | 44879125 | 146 | -20.28 |
| ADediting_1334013 | chr7_44879129_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-1281 | chr7 | 44879126 | 44879132 | 7mer-m8 | 44879125 | 44879141 | 145 | -17.85 |
| ADediting_1334013 | chr7_44879129_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-660-3p | chr7 | 44879128 | 44879134 | 7mer-m8 | 44879127 | 44879147 | 164 | -21.31 |
| ADediting_1334013 | chr7_44879129_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-6791-3p | chr7 | 44879127 | 44879133 | 7mer-m8 | 44879126 | 44879145 | 157 | -24.51 |
| ADediting_1334013 | chr7_44879129_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-6829-3p | chr7 | 44879127 | 44879133 | 7mer-m8 | 44879126 | 44879145 | 144 | -20.88 |
| ADediting_1334014 | chr7_44879137_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-10400-3p | chr7 | 44879133 | 44879139 | 7mer-m8 | 44879132 | 44879153 | 140 | -20.37 |
| ADediting_1334014 | chr7_44879137_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-4437 | chr7 | 44879133 | 44879140 | 8mer-1a | 44879133 | 44879153 | 145 | -16.69 |
| ADediting_1334014 | chr7_44879137_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-4674 | chr7 | 44879133 | 44879139 | 7mer-m8 | 44879132 | 44879152 | 146 | -23.01 |
| ADediting_1334014 | chr7_44879137_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-6847-3p | chr7 | 44879136 | 44879142 | 7mer-m8 | 44879135 | 44879156 | 154 | -22.53 |
| ADediting_1334015 | chr7_44879169_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-1207-3p | chr7 | 44879169 | 44879175 | 7mer-m8 | 44879168 | 44879186 | 145 | -13.53 |
| ADediting_1334015 | chr7_44879169_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-646 | chr7 | 44879167 | 44879173 | 7mer-m8 | 44879166 | 44879185 | 148 | -22.3 |
| ADediting_1334017 | chr7_44879179_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-140-3p | chr7 | 44879177 | 44879183 | 7mer-m8 | 44879176 | 44879196 | 163 | -23.48 |
| ADediting_1334019 | chr7_44879214_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-153-5p | chr7 | 44879214 | 44879220 | 7mer-m8 | 44879213 | 44879235 | 144 | -8.17 |
| ADediting_1334020 | chr7_44879244_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-6876-3p | chr7 | 44879242 | 44879248 | 7mer-1a | 44879242 | 44879265 | 142 | -18.21 |
| ADediting_1334021 | chr7_44879294_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-371a-3p | chr7 | 44879289 | 44879295 | 7mer-m8 | 44879288 | 44879310 | 145 | -16.11 |
| ADediting_1334022 | chr7_44879299_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-8052 | chr7 | 44879294 | 44879300 | 7mer-1a | 44879294 | 44879312 | 140 | -24.15 |
| ADediting_1334023 | chr7_44879300_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-513a-5p | chr7 | 44879299 | 44879305 | 7mer-m8 | 44879298 | 44879315 | 144 | -16.68 |
| ADediting_1334023 | chr7_44879300_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-638 | chr7 | 44879294 | 44879300 | 7mer-1a | 44879294 | 44879318 | 159 | -35.77 |
| ADediting_1334024 | chr7_44880792_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-34b-3p | chr7 | 44880787 | 44880793 | 7mer-m8 | 44880786 | 44880807 | 140 | -11.15 |
| ADediting_1587639 | chr7_44879223_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-374b-3p | chr7 | 44879218 | 44879225 | 8mer-1a | 44879218 | 44879240 | 147 | -12.57 |
| ADediting_1587640 | chr7_44879234_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-412-3p | chr7 | 44879234 | 44879240 | 7mer-m8 | 44879233 | 44879260 | 158 | -22.77 |
| ADediting_1587640 | chr7_44879234_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-4508 | chr7 | 44879229 | 44879235 | 7mer-m8 | 44879228 | 44879244 | 140 | -21.85 |
| ADediting_1587640 | chr7_44879234_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-6754-3p | chr7 | 44879234 | 44879240 | 7mer-m8 | 44879233 | 44879257 | 145 | -17.32 |
| ADediting_1587641 | chr7_44879235_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-1229-3p | chr7 | 44879234 | 44879240 | 7mer-m8 | 44879233 | 44879254 | 152 | -16.24 |
| ADediting_1587641 | chr7_44879235_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-6511a-3p | chr7 | 44879234 | 44879241 | 8mer-1a | 44879234 | 44879256 | 147 | -17.85 |
| ADediting_1587641 | chr7_44879235_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-6511b-3p | chr7 | 44879234 | 44879241 | 8mer-1a | 44879234 | 44879257 | 144 | -16.31 |
| ADediting_1587642 | chr7_44879236_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-23a-5p | chr7 | 44879231 | 44879237 | 7mer-m8 | 44879230 | 44879251 | 140 | -18.3 |
| ADediting_1587642 | chr7_44879236_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-23b-5p | chr7 | 44879231 | 44879237 | 7mer-m8 | 44879230 | 44879250 | 156 | -20.63 |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1333993 | chr7_44877557_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-4310 | chr7 | 44877552 | 44877558 | 7mer-m8 | 44877551 | 44877566 | 140 | -8.38 |
| ADediting_1333993 | chr7_44877557_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-7157-5p | chr7 | 44877552 | 44877558 | 7mer-m8 | 44877551 | 44877572 | 151 | -15.94 |
| ADediting_1333995 | chr7_44877559_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-450a-1-3p | chr7 | 44877558 | 44877565 | 8mer-1a | 44877558 | 44877579 | 140 | -10.65 |
| ADediting_1333996 | chr7_44877637_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-4684-5p | chr7 | 44877633 | 44877639 | 7mer-m8 | 44877632 | 44877654 | 152 | -14.61 |
| ADediting_1333999 | chr7_44877660_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-1285-3p | chr7 | 44877659 | 44877665 | 7mer-m8 | 44877658 | 44877679 | 140 | -15.26 |
| ADediting_1333999 | chr7_44877660_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-3187-5p | chr7 | 44877659 | 44877665 | 7mer-m8 | 44877658 | 44877681 | 150 | -21.45 |
| ADediting_1333999 | chr7_44877660_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-5189-5p | chr7 | 44877659 | 44877665 | 7mer-m8 | 44877658 | 44877683 | 149 | -23.98 |
| ADediting_1333999 | chr7_44877660_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-612 | chr7 | 44877659 | 44877665 | 7mer-m8 | 44877658 | 44877683 | 148 | -23.52 |
| ADediting_1333999 | chr7_44877660_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-6860 | chr7 | 44877659 | 44877665 | 7mer-m8 | 44877658 | 44877680 | 150 | -20.19 |
| ADediting_1334003 | chr7_44877692_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-5690 | chr7 | 44877688 | 44877694 | 7mer-m8 | 44877687 | 44877707 | 145 | -16.74 |
| ADediting_1334004 | chr7_44877695_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-12126 | chr7 | 44877692 | 44877699 | 8mer-1a | 44877692 | 44877715 | 147 | -13.23 |
| ADediting_1334004 | chr7_44877695_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-887-5p | chr7 | 44877695 | 44877701 | 7mer-m8 | 44877694 | 44877713 | 143 | -19.73 |
| ADediting_1334007 | chr7_44877741_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-12135 | chr7 | 44877736 | 44877742 | 7mer-m8 | 44877735 | 44877752 | 140 | -9.26 |
| ADediting_1334007 | chr7_44877741_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-6516-5p | chr7 | 44877741 | 44877747 | 7mer-m8 | 44877740 | 44877759 | 148 | -12.72 |
| ADediting_1334009 | chr7_44877807_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-340-3p | chr7 | 44877801 | 44877808 | 8mer-1a | 44877801 | 44877822 | 146 | -18.22 |
| ADediting_1334009 | chr7_44877807_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-371b-5p | chr7 | 44877805 | 44877812 | 8mer-1a | 44877805 | 44877826 | 146 | -8.27 |
| ADediting_1334009 | chr7_44877807_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-373-5p | chr7 | 44877805 | 44877812 | 8mer-1a | 44877805 | 44877826 | 142 | -8.35 |
| ADediting_1334009 | chr7_44877807_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-616-5p | chr7 | 44877805 | 44877812 | 8mer-1a | 44877805 | 44877826 | 140 | -5.71 |
| ADediting_1334009 | chr7_44877807_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-6827-3p | chr7 | 44877801 | 44877808 | 8mer-1a | 44877801 | 44877821 | 140 | -14.67 |
| ADediting_1334010 | chr7_44879071_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-6739-3p | chr7 | 44879070 | 44879076 | 7mer-m8 | 44879069 | 44879089 | 151 | -19.95 |
| ADediting_1334011 | chr7_44879073_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-6739-3p | chr7 | 44879070 | 44879076 | 7mer-m8 | 44879069 | 44879089 | 151 | -19.95 |
| ADediting_1334013 | chr7_44879129_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-516a-3p | chr7 | 44879127 | 44879133 | 7mer-m8 | 44879126 | 44879146 | 143 | -17.02 |
| ADediting_1334013 | chr7_44879129_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-516b-3p | chr7 | 44879127 | 44879133 | 7mer-m8 | 44879126 | 44879146 | 143 | -17.02 |
| ADediting_1334013 | chr7_44879129_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-7162-5p | chr7 | 44879127 | 44879133 | 7mer-m8 | 44879126 | 44879143 | 140 | -14.56 |
| ADediting_1334014 | chr7_44879137_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-1206 | chr7 | 44879136 | 44879142 | 7mer-m8 | 44879135 | 44879155 | 145 | -11.84 |
| ADediting_1334015 | chr7_44879169_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-562 | chr7 | 44879166 | 44879172 | 7mer-m8 | 44879165 | 44879185 | 151 | -14.2 |
| ADediting_1334015 | chr7_44879169_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-5697 | chr7 | 44879165 | 44879171 | 7mer-m8 | 44879164 | 44879185 | 146 | -18.01 |
| ADediting_1334017 | chr7_44879179_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-7151-3p | chr7 | 44879179 | 44879185 | 7mer-m8 | 44879178 | 44879199 | 143 | -18.12 |
| ADediting_1334017 | chr7_44879179_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-8052 | chr7 | 44879173 | 44879179 | 7mer-1a | 44879173 | 44879191 | 143 | -23.66 |
| ADediting_1334018 | chr7_44879205_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-4735-5p | chr7 | 44879204 | 44879210 | 7mer-m8 | 44879203 | 44879224 | 148 | -5.48 |
| ADediting_1334018 | chr7_44879205_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-4775 | chr7 | 44879205 | 44879211 | 7mer-m8 | 44879204 | 44879226 | 149 | -6.02 |
| ADediting_1334020 | chr7_44879244_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-4716-5p | chr7 | 44879239 | 44879245 | 7mer-m8 | 44879238 | 44879260 | 146 | -15.79 |
| ADediting_1334021 | chr7_44879294_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-5089-5p | chr7 | 44879294 | 44879300 | 7mer-m8 | 44879293 | 44879315 | 148 | -14.13 |
| ADediting_1334021 | chr7_44879294_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-512-3p | chr7 | 44879289 | 44879295 | 7mer-m8 | 44879288 | 44879309 | 149 | -14.26 |
| ADediting_1334021 | chr7_44879294_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-6506-5p | chr7 | 44879293 | 44879299 | 7mer-m8 | 44879292 | 44879314 | 144 | -13.78 |
| ADediting_1334022 | chr7_44879299_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-10399-5p | chr7 | 44879298 | 44879304 | 7mer-m8 | 44879297 | 44879318 | 144 | -10.39 |
| ADediting_1334022 | chr7_44879299_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-5089-5p | chr7 | 44879294 | 44879300 | 7mer-m8 | 44879293 | 44879315 | 148 | -14.13 |
| ADediting_1334022 | chr7_44879299_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-6504-3p | chr7 | 44879298 | 44879304 | 7mer-m8 | 44879297 | 44879318 | 148 | -14.48 |
| ADediting_1334023 | chr7_44879300_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-10399-5p | chr7 | 44879298 | 44879304 | 7mer-m8 | 44879297 | 44879318 | 144 | -10.39 |
| ADediting_1334023 | chr7_44879300_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-6504-3p | chr7 | 44879298 | 44879304 | 7mer-m8 | 44879297 | 44879318 | 148 | -14.48 |
| ADediting_1334023 | chr7_44879300_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-7151-3p | chr7 | 44879299 | 44879306 | 8mer-1a | 44879299 | 44879319 | 144 | -16.51 |
| ADediting_1334025 | chr7_44881040_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-376c-3p | chr7 | 44881037 | 44881043 | 7mer-m8 | 44881036 | 44881056 | 153 | -13.52 |
| ADediting_1587637 | chr7_44877540_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-6847-3p | chr7 | 44877535 | 44877541 | 7mer-m8 | 44877534 | 44877557 | 148 | -20.19 |
| ADediting_1587639 | chr7_44879223_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-6832-5p | chr7 | 44879222 | 44879228 | 7mer-m8 | 44879221 | 44879243 | 142 | -16.66 |
| ADediting_1587640 | chr7_44879234_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-193b-5p | chr7 | 44879230 | 44879236 | 7mer-m8 | 44879229 | 44879250 | 142 | -17.74 |
| ADediting_1587641 | chr7_44879235_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-193b-5p | chr7 | 44879230 | 44879236 | 7mer-m8 | 44879229 | 44879250 | 142 | -17.74 |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-5688 | chr7 | 44878199 | 44878205 | 7mer-m8 | 44878198 | 44878219 | 150 | -12.23 |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-5688 | chr7 | 44880235 | 44880241 | 7mer-m8 | 44880234 | 44880256 | 156 | -14.83 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-589-3p | chr7 | 44880108 | 44880115 | 8mer-1a | 44880108 | 44880133 | 153 | -20.25 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-641 | chr7 | 44877126 | 44877132 | 7mer-m8 | 44877125 | 44877148 | 146 | -16.17 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-641 | chr7 | 44882241 | 44882247 | 7mer-m8 | 44882240 | 44882263 | 150 | -13.79 |
| ADediting_286380 | chr11_79422188_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-5579-3p | chr7 | 44878111 | 44878117 | 7mer-1a | 44878111 | 44878133 | 140 | -20.44 |
| ADediting_286380 | chr11_79422188_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-5579-3p | chr7 | 44880425 | 44880431 | 7mer-m8 | 44880424 | 44880444 | 153 | -16.3 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-4775 | chr7 | 44880923 | 44880930 | 8mer-1a | 44880923 | 44880944 | 160 | -11.79 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-5585-3p | chr7 | 44876644 | 44876650 | 7mer-m8 | 44876643 | 44876666 | 154 | -21.26 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-5585-3p | chr7 | 44879484 | 44879490 | 7mer-m8 | 44879483 | 44879507 | 143 | -16.84 |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_107020 | chr1_37500952_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-5581-3p | chr7 | 44883740 | 44883747 | 8mer-1a | 44883740 | 44883761 | 140 | -13.14 |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-5688 | chr7 | 44878020 | 44878026 | 7mer-m8 | 44878019 | 44878040 | 144 | -9.57 |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-5688 | chr7 | 44881138 | 44881144 | 7mer-m8 | 44881137 | 44881157 | 152 | -11.48 |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-5688 | chr7 | 44881508 | 44881514 | 7mer-m8 | 44881507 | 44881527 | 143 | -9.57 |
| ADediting_1535951 | chr14_100874558_+ | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-337-3p | chr7 | 44877199 | 44877206 | 8mer-1a | 44877199 | 44877220 | 149 | -10.44 |
| ADediting_1535953 | chr14_101045971_+ | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-381-3p | chr7 | 44882031 | 44882038 | 8mer-1a | 44882031 | 44882052 | 142 | -11.15 |
| ADediting_1535954 | chr14_101045974_+ | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-381-3p | chr7 | 44882031 | 44882038 | 8mer-1a | 44882031 | 44882052 | 142 | -11.15 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-641 | chr7 | 44876989 | 44876995 | 7mer-m8 | 44876988 | 44877011 | 149 | -14.04 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-641 | chr7 | 44878297 | 44878303 | 7mer-m8 | 44878296 | 44878318 | 149 | -14.21 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-641 | chr7 | 44883718 | 44883724 | 7mer-m8 | 44883717 | 44883740 | 143 | -13.38 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-641 | chr7 | 44876989 | 44876995 | 7mer-m8 | 44876988 | 44877011 | 149 | -14.04 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-641 | chr7 | 44878297 | 44878303 | 7mer-m8 | 44878296 | 44878318 | 149 | -14.21 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-641 | chr7 | 44883718 | 44883724 | 7mer-m8 | 44883717 | 44883740 | 143 | -13.38 |
| ADediting_286380 | chr11_79422188_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-5579-3p | chr7 | 44881617 | 44881623 | 7mer-m8 | 44881616 | 44881637 | 146 | -9.12 |
| ADediting_286380 | chr11_79422188_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-5579-3p | chr7 | 44881820 | 44881826 | 7mer-m8 | 44881819 | 44881839 | 145 | -11.53 |
| ADediting_291761 | chr11_93733708_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-1304-3p | chr7 | 44880298 | 44880305 | 8mer-1a | 44880298 | 44880321 | 142 | -18.6 |
| ADediting_291761 | chr11_93733708_- | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-1304-3p | chr7 | 44884327 | 44884333 | 7mer-m8 | 44884326 | 44884347 | 140 | -11.07 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-4775 | chr7 | 44879205 | 44879211 | 7mer-m8 | 44879204 | 44879226 | 149 | -6.02 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-4775 | chr7 | 44882527 | 44882533 | 7mer-m8 | 44882526 | 44882548 | 155 | -10.09 |
| ADediting_98288 | chr1_32086990_+ | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-5585-3p | chr7 | 44877150 | 44877156 | 7mer-m8 | 44877149 | 44877174 | 154 | -19.25 |
| ADediting_98288 | chr1_32086990_+ | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-5585-3p | chr7 | 44878240 | 44878246 | 7mer-m8 | 44878239 | 44878260 | 140 | -13.8 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-5585-3p | chr7 | 44877150 | 44877156 | 7mer-m8 | 44877149 | 44877174 | 154 | -19.25 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000146676.10 | ENST00000395699.5 | PURB-201 | hsa-miR-5585-3p | chr7 | 44878240 | 44878246 | 7mer-m8 | 44878239 | 44878260 | 140 | -13.8 |
| Differentially expressed gene-miRNA network |
Top |
The effects of the RNA editing to the stability of the RNA structures for PURB |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000395699.5 | protein_coding |  |  |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_1587637 | ENST00000395699.5 | chr7_44877540_- | 7991 | -2966.50 | -2960.70 | -3026.20 |
| ADediting_1333992 | ENST00000395699.5 | chr7_44877546_- | 7985 | -2960.70 | -2960.70 | -3026.20 |
| ADediting_1333993 | ENST00000395699.5 | chr7_44877557_- | 7974 | -2966.50 | -2960.70 | -3026.20 |
| ADediting_1333994 | ENST00000395699.5 | chr7_44877558_- | 7973 | -2962.10 | -2960.70 | -3026.20 |
| ADediting_1333995 | ENST00000395699.5 | chr7_44877559_- | 7972 | -2966.70 | -2960.70 | -3026.20 |
| ADediting_1333996 | ENST00000395699.5 | chr7_44877637_- | 7894 | -2960.40 | -2960.70 | -3026.20 |
| ADediting_1333997 | ENST00000395699.5 | chr7_44877640_- | 7891 | -2960.40 | -2960.70 | -3026.20 |
| ADediting_1333998 | ENST00000395699.5 | chr7_44877646_- | 7885 | -2960.70 | -2960.70 | -3026.20 |
| ADediting_1333999 | ENST00000395699.5 | chr7_44877660_- | 7871 | -2966.90 | -2960.70 | -3026.20 |
| ADediting_1334000 | ENST00000395699.5 | chr7_44877679_- | 7852 | -2967.30 | -2960.70 | -3026.20 |
| ADediting_1334001 | ENST00000395699.5 | chr7_44877680_- | 7851 | -2960.00 | -2960.70 | -3026.20 |
| ADediting_1334002 | ENST00000395699.5 | chr7_44877682_- | 7849 | -2960.70 | -2960.70 | -3026.20 |
| ADediting_1334003 | ENST00000395699.5 | chr7_44877692_- | 7839 | -2960.40 | -2960.70 | -3026.20 |
| ADediting_1334004 | ENST00000395699.5 | chr7_44877695_- | 7836 | -2960.40 | -2960.70 | -3026.20 |
| ADediting_1334005 | ENST00000395699.5 | chr7_44877717_- | 7814 | -2961.00 | -2960.70 | -3026.20 |
| ADediting_1334006 | ENST00000395699.5 | chr7_44877721_- | 7810 | -2960.70 | -2960.70 | -3026.20 |
| ADediting_1587638 | ENST00000395699.5 | chr7_44877722_- | 7809 | -2960.60 | -2960.70 | -3026.20 |
| ADediting_1334007 | ENST00000395699.5 | chr7_44877741_- | 7790 | -2960.70 | -2960.70 | -3026.20 |
| ADediting_1334008 | ENST00000395699.5 | chr7_44877752_- | 7779 | -2964.30 | -2960.70 | -3026.20 |
| ADediting_1334009 | ENST00000395699.5 | chr7_44877807_- | 7724 | -2959.80 | -2960.70 | -3026.20 |
| ADediting_1334010 | ENST00000395699.5 | chr7_44879071_- | 6460 | -2966.70 | -2960.70 | -3026.20 |
| ADediting_1334011 | ENST00000395699.5 | chr7_44879073_- | 6458 | -2967.40 | -2960.70 | -3026.20 |
| ADediting_1334012 | ENST00000395699.5 | chr7_44879109_- | 6422 | -2964.10 | -2960.70 | -3026.20 |
| ADediting_1334013 | ENST00000395699.5 | chr7_44879129_- | 6402 | -2967.30 | -2960.70 | -3026.20 |
| ADediting_1334014 | ENST00000395699.5 | chr7_44879137_- | 6394 | -2967.40 | -2960.70 | -3026.20 |
| ADediting_1334015 | ENST00000395699.5 | chr7_44879169_- | 6362 | -2960.70 | -2960.70 | -3026.20 |
| ADediting_1334016 | ENST00000395699.5 | chr7_44879173_- | 6358 | -2960.00 | -2960.70 | -3026.20 |
| ADediting_1334017 | ENST00000395699.5 | chr7_44879179_- | 6352 | -2960.30 | -2960.70 | -3026.20 |
| ADediting_1334018 | ENST00000395699.5 | chr7_44879205_- | 6326 | -2960.40 | -2960.70 | -3026.20 |
| ADediting_1334019 | ENST00000395699.5 | chr7_44879214_- | 6317 | -2960.70 | -2960.70 | -3026.20 |
| ADediting_1587639 | ENST00000395699.5 | chr7_44879223_- | 6308 | -2960.70 | -2960.70 | -3026.20 |
| ADediting_1587640 | ENST00000395699.5 | chr7_44879234_- | 6297 | -2960.70 | -2960.70 | -3026.20 |
| ADediting_1587641 | ENST00000395699.5 | chr7_44879235_- | 6296 | -2960.80 | -2960.70 | -3026.20 |
| ADediting_1587642 | ENST00000395699.5 | chr7_44879236_- | 6295 | -2960.20 | -2960.70 | -3026.20 |
| ADediting_1334020 | ENST00000395699.5 | chr7_44879244_- | 6287 | -2960.70 | -2960.70 | -3026.20 |
| ADediting_1334021 | ENST00000395699.5 | chr7_44879294_- | 6237 | -2960.00 | -2960.70 | -3026.20 |
| ADediting_1334022 | ENST00000395699.5 | chr7_44879299_- | 6232 | -2960.70 | -2960.70 | -3026.20 |
| ADediting_1334023 | ENST00000395699.5 | chr7_44879300_- | 6231 | -2960.80 | -2960.70 | -3026.20 |
| ADediting_1334024 | ENST00000395699.5 | chr7_44880792_- | 4739 | -2966.90 | -2960.70 | -3026.20 |
| ADediting_1334025 | ENST00000395699.5 | chr7_44881040_- | 4491 | -2966.60 | -2960.70 | -3026.20 |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
Top |
Relation with ADAR for PURB |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| CER | ADediting_1333992 | chr7_44877546_- | 0.142033043226616 | 0.120453803434367 | 0.000144795358034942 | 0.305365331491249 | 0.48177393104252 | 0.0578726054888424 |
| CER | ADediting_1333996 | chr7_44877637_- | 0.00167464570151788 | 0.254481682589758 | 8.10883430687751e-05 | 0.316145930072863 | 0.400669740958478 | 0.0691165535414416 |
| CER | ADediting_1334000 | chr7_44877679_- | 0.00862584801048603 | 0.213759434342887 | 2.81689001122847e-05 | 0.334810491904882 | 0.00426276500347296 | 0.232103531592896 |
| CER | ADediting_1334002 | chr7_44877682_- | 0.00693139532875589 | 0.219603260852662 | 8.93279975286755e-05 | 0.314374922411847 | 0.226367434674044 | 0.0993638215668488 |
| CER | ADediting_1334003 | chr7_44877692_- | 0.00581412993414904 | 0.224197999337752 | 2.77612748973056e-05 | 0.335059522775866 | 0.00722465222726128 | 0.218507038702147 |
| CER | ADediting_1334007 | chr7_44877741_- | 0.0152113110392116 | 0.197880439614084 | 1.96607172877768e-05 | 0.340892443997954 | 0.000535589075950842 | 0.279381714027089 |
| CER | ADediting_1334008 | chr7_44877752_- | 0.0272573234821142 | 0.180295491319892 | 5.99569500804983e-06 | 0.360125353492273 | 4.12193635866874e-05 | 0.328229412027731 |
| CER | ADediting_1334012 | chr7_44879109_- | 0.241838003019584 | 0.0961459101640039 | 0.000174817705785044 | 0.301770429843788 | 0.000763794809049164 | 0.271878746121173 |
| CER | ADediting_1334013 | chr7_44879129_- | 0.115982315338551 | 0.128884376524516 | 4.47760611259086e-05 | 0.326778495941975 | 0.0101400233336057 | 0.20934259428681 |
| CER | ADediting_1334015 | chr7_44879169_- | 0.0825806065283354 | 0.142204443478046 | 7.91918529126795e-05 | 0.316577334956193 | 0.00113497846534017 | 0.263246927197611 |
| CER | ADediting_1334017 | chr7_44879179_- | 0.0151694150742682 | 0.197960371188036 | 3.7888420161739e-06 | 0.36723598621711 | 0.00244120325164846 | 0.24569322493886 |
| CER | ADediting_1334018 | chr7_44879205_- | 0.00659336309378834 | 0.220919239510285 | 5.92298204161062e-07 | 0.394384004042193 | 0.00314797624228095 | 0.239586341047994 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 3.8733551743491e-28 | 0.570291664244349 | 5.06302736986916e-11 | 0.361841893316291 | 3.63638481812965e-22 | 0.51254563434309 |
| AC | 3.96359841642414e-118 | 0.940356275998764 | 7.54626425819337e-93 | 0.902773250466738 | 9.96272483207872e-07 | 0.303607737070108 |
| PCC | 2.35078052559226e-86 | 0.933897236851227 | 3.40919764743556e-82 | 0.926570821051429 | 0.0123192132901832 | 0.180792926791319 |
| CER | 6.78456749797535e-59 | 0.911268160661499 | 1.56616303030333e-44 | 0.85735619643172 | 0.0232610971815999 | 0.185216157164081 |
| TCX | 1.04197871360213e-63 | 0.924106730766248 | 4.21871655893834e-23 | 0.696633393143421 | 0.0151888577159073 | 0.197923253482504 |
| FP | 3.84913257333706e-18 | 0.590940246485802 | 5.08271736903437e-36 | 0.768880694046657 | 0.400642191919672 | 0.0633794128308958 |
| IFG | 4.23713181034004e-08 | 0.857851319465885 | 3.55749547050893e-06 | 0.783895678761809 | 0.801114755914059 | 0.0530620721347692 |
| PG | 1.76296630801104e-56 | 0.863087761201393 | 1.2226487144974e-40 | 0.788146403644548 | 0.245111866097206 | -0.085644960960528 |
| STG | 2.87029022657308e-16 | 0.748155947102816 | 2.46800687230555e-22 | 0.828303894386784 | 0.618231388633105 | -0.0551604574209271 |
Top |
Relation with AD stages for PURB |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
| CER | 0.000202081686467613 | 0.350287348043805 |
| TCX | 0.000393345319850146 | 0.338086177597392 |
Top |
RelatedDrugs for PURB |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for PURB |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
|