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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for CASKIN1 |
 Gene summary |
| Gene information | Gene symbol | CASKIN1 | Gene ID | 57524 |
| Gene name | CASK interacting protein 1 | |
| Synonyms | ANKS5A | |
| Cytomap | 16p13.3 | |
| Type of gene | protein-coding | |
| Description | caskin-1 | |
| Modification date | 20200313 | |
| UniProtAcc | Q8WXD9, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for CASKIN1 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_523565(2192062, -), ADediting_523566(2192074, -), ADediting_523567(2192119, -), ADediting_523568(2192155, -), ADediting_523569(2192187, -), ADediting_523572(2192230, -), ADediting_523579(2193039, -), ADediting_523582(2193132, -), ADediting_523583(2193155, -), ADediting_523584(2193156, -), ADediting_523611(2196461, -), ADediting_1541399(2192088, -), |
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RNA editing positional annotations for CASKIN1 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_523565 | chr16_2192062_- | intronic |
| ADediting_523566 | chr16_2192074_- | intronic |
| ADediting_523567 | chr16_2192119_- | intronic |
| ADediting_523568 | chr16_2192155_- | intronic |
| ADediting_523569 | chr16_2192187_- | intronic |
| ADediting_523572 | chr16_2192230_- | intronic |
| ADediting_523579 | chr16_2193039_- | intronic |
| ADediting_523582 | chr16_2193132_- | intronic |
| ADediting_523583 | chr16_2193155_- | intronic |
| ADediting_523584 | chr16_2193156_- | intronic |
| ADediting_523611 | chr16_2196461_- | UTR5 |
| ADediting_1541399 | chr16_2192088_- | intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_523565 | chr16_2192062_- | SINE | Alu | Name=AluJr |
| ADediting_523566 | chr16_2192074_- | SINE | Alu | Name=AluJr |
| ADediting_523567 | chr16_2192119_- | SINE | Alu | Name=AluJr |
| ADediting_523568 | chr16_2192155_- | SINE | Alu | Name=AluJr |
| ADediting_523569 | chr16_2192187_- | SINE | Alu | Name=AluJr |
| ADediting_523572 | chr16_2192230_- | SINE | Alu | Name=AluJr |
| ADediting_523579 | chr16_2193039_- | SINE | Alu | Name=AluSp |
| ADediting_523582 | chr16_2193132_- | SINE | Alu | Name=AluSp |
| ADediting_523583 | chr16_2193155_- | SINE | Alu | Name=AluSp |
| ADediting_523584 | chr16_2193156_- | SINE | Alu | Name=AluSp |
| ADediting_1541399 | chr16_2192088_- | SINE | Alu | Name=AluJr |
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RNA A-to-I editing events in the alternative splicing sites for CASKIN1 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CASKIN1 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |