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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for ATP10D |
 Gene summary |
| Gene information | Gene symbol | ATP10D | Gene ID | 57205 |
| Gene name | ATPase phospholipid transporting 10D (putative) | |
| Synonyms | ATPVD | |
| Cytomap | 4p12 | |
| Type of gene | protein-coding | |
| Description | probable phospholipid-transporting ATPase VDATPase, class V, type 10DP4-ATPase flippase complex alpha subunit ATP10Dtype IV aminophospholipid transporting ATPase | |
| Modification date | 20200313 | |
| UniProtAcc | Q9P241, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for ATP10D |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_1138065(47487108, +), ADediting_1138066(47487109, +), ADediting_1138067(47487114, +), ADediting_1138068(47487135, +), ADediting_1138069(47487141, +), ADediting_1138070(47502284, +), ADediting_1138071(47502294, +), ADediting_1138072(47502324, +), ADediting_1138079(47522670, +), ADediting_1138080(47535031, +), ADediting_1138081(47535124, +), ADediting_1138082(47582888, +), ADediting_1138083(47582961, +), ADediting_1138084(47584603, +), ADediting_1577774(47487138, +), ADediting_1577775(47582934, +), ADediting_1652219(47487078, +), |
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RNA editing positional annotations for ATP10D using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_1138065 | chr4_47487108_+ | intronic |
| ADediting_1138066 | chr4_47487109_+ | intronic |
| ADediting_1138067 | chr4_47487114_+ | intronic |
| ADediting_1138068 | chr4_47487135_+ | intronic |
| ADediting_1138069 | chr4_47487141_+ | intronic |
| ADediting_1138070 | chr4_47502284_+ | intronic |
| ADediting_1138071 | chr4_47502294_+ | intronic |
| ADediting_1138072 | chr4_47502324_+ | intronic |
| ADediting_1138079 | chr4_47522670_+ | intronic |
| ADediting_1138080 | chr4_47535031_+ | intronic |
| ADediting_1138081 | chr4_47535124_+ | intronic |
| ADediting_1138082 | chr4_47582888_+ | intronic |
| ADediting_1138083 | chr4_47582961_+ | intronic |
| ADediting_1138084 | chr4_47584603_+ | intronic |
| ADediting_1577774 | chr4_47487138_+ | intronic |
| ADediting_1577775 | chr4_47582934_+ | intronic |
| ADediting_1652219 | chr4_47487078_+ | intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_1138065 | chr4_47487108_+ | SINE | Alu | Name=AluSp |
| ADediting_1138066 | chr4_47487109_+ | SINE | Alu | Name=AluSp |
| ADediting_1138067 | chr4_47487114_+ | SINE | Alu | Name=AluSp |
| ADediting_1138068 | chr4_47487135_+ | SINE | Alu | Name=AluSp |
| ADediting_1138069 | chr4_47487141_+ | SINE | Alu | Name=AluSp |
| ADediting_1138070 | chr4_47502284_+ | SINE | Alu | Name=AluYj4 |
| ADediting_1138071 | chr4_47502294_+ | SINE | Alu | Name=AluYj4 |
| ADediting_1138072 | chr4_47502324_+ | SINE | Alu | Name=AluYj4 |
| ADediting_1138079 | chr4_47522670_+ | SINE | Alu | Name=AluSx |
| ADediting_1138080 | chr4_47535031_+ | LINE | L1 | Name=L1PA15 |
| ADediting_1138081 | chr4_47535124_+ | LINE | L1 | Name=L1PA15 |
| ADediting_1138082 | chr4_47582888_+ | SINE | Alu | Name=AluJr |
| ADediting_1138083 | chr4_47582961_+ | SINE | Alu | Name=AluJr |
| ADediting_1138084 | chr4_47584603_+ | SINE | Alu | Name=AluY |
| ADediting_1577774 | chr4_47487138_+ | SINE | Alu | Name=AluSp |
| ADediting_1577775 | chr4_47582934_+ | SINE | Alu | Name=AluJr |
| ADediting_1652219 | chr4_47487078_+ | SINE | Alu | Name=AluSp |
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RNA A-to-I editing events in the alternative splicing sites for ATP10D |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| ES | ADediting_1138083 | chr4_47582961_+ | 47582959:47582967 | 5ss | 1e | ATAGTGAGA | 1.69 | ATGGTGAGA | 7.23 |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for ATP10D |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |