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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for SLC12A9 |
 Gene summary |
| Gene information | Gene symbol | SLC12A9 | Gene ID | 56996 |
| Gene name | solute carrier family 12 member 9 | |
| Synonyms | CCC6|CIP1|WO3.3|hCCC6 | |
| Cytomap | 7q22.1 | |
| Type of gene | protein-coding | |
| Description | solute carrier family 12 member 9CCC-interacting protein 1cation-chloride cotransporter 6cation-chloride cotransporter-interacting protein 1potassium-chloride transporter 9solute carrier family 12 (potassium/chloride transporters), member 9 | |
| Modification date | 20200313 | |
| UniProtAcc | Q9BXP2, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
Top |
RNA A-to-I events for SLC12A9 |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA editing frequencies across three data sets. |
 |
| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
 |
| RNA A-to-I editing events in AD. |
| ADediting_1286157(100829262, +), ADediting_1286158(100831446, +), ADediting_1286159(100831448, +), ADediting_1286160(100835180, +), ADediting_1286161(100854909, +), ADediting_1286162(100854914, +), ADediting_1286163(100854944, +), ADediting_1286164(100854954, +), ADediting_1286165(100854962, +), ADediting_1286166(100854963, +), ADediting_1286167(100854968, +), ADediting_1286168(100854978, +), ADediting_1286169(100854982, +), ADediting_1286170(100855008, +), ADediting_1286171(100855017, +), ADediting_1286172(100855033, +), ADediting_1286173(100855049, +), ADediting_1286174(100855053, +), ADediting_1286175(100855076, +), ADediting_1286176(100855085, +), ADediting_1286177(100855113, +), ADediting_1286178(100855114, +), ADediting_1286179(100855121, +), ADediting_1286180(100855135, +), ADediting_1286181(100855190, +), ADediting_1286182(100855192, +), ADediting_1286183(100855197, +), ADediting_1286184(100855222, +), ADediting_1286185(100855223, +), ADediting_1286186(100855252, +), ADediting_1286187(100855256, +), ADediting_1286188(100855268, +), ADediting_1286189(100855272, +), ADediting_1286190(100855305, +), ADediting_1286191(100855331, +), ADediting_1286192(100855356, +), ADediting_1286193(100855357, +), ADediting_1286194(100855361, +), ADediting_1286195(100855374, +), ADediting_1286196(100855383, +), ADediting_1286197(100855384, +), ADediting_1286198(100855385, +), ADediting_1286199(100855390, +), ADediting_1286200(100855396, +), ADediting_1286201(100856032, +), ADediting_1286202(100856213, +), ADediting_1286203(100856261, +), ADediting_1286204(100856288, +), ADediting_1286205(100856307, +), ADediting_1286206(100856308, +), ADediting_1286207(100856311, +), ADediting_1286208(100856312, +), ADediting_1286209(100856337, +), ADediting_1286210(100856347, +), ADediting_1286211(100856349, +), ADediting_1286212(100856353, +), ADediting_1286213(100856388, +), ADediting_1286214(100856391, +), ADediting_1286215(100856417, +), ADediting_1286216(100856443, +), ADediting_1286217(100856460, +), ADediting_1286218(100856539, +), ADediting_1286219(100856546, +), ADediting_1286220(100856554, +), ADediting_1286221(100856558, +), ADediting_1286222(100856576, +), ADediting_1286223(100856589, +), ADediting_1286224(100856590, +), ADediting_1286225(100856594, +), ADediting_1286226(100856595, +), ADediting_1286227(100856627, +), ADediting_1286228(100856632, +), ADediting_1286229(100856643, +), ADediting_1286230(100856652, +), ADediting_1286231(100856654, +), ADediting_1286232(100856658, +), ADediting_1286233(100856679, +), ADediting_1286234(100856686, +), ADediting_1286235(100856697, +), ADediting_1286236(100856709, +), ADediting_1286237(100856711, +), ADediting_1286238(100856712, +), ADediting_1286239(100856721, +), ADediting_1286240(100856726, +), ADediting_1286241(100856732, +), ADediting_1286242(100856733, +), ADediting_1286243(100856734, +), ADediting_1286244(100856746, +), ADediting_1286245(100856747, +), ADediting_1286246(100856750, +), ADediting_1286247(100856751, +), ADediting_1286248(100856759, +), ADediting_1286249(100856773, +), ADediting_1286250(100856774, +), ADediting_1286251(100857642, +), ADediting_1286252(100857650, +), ADediting_1286253(100857651, +), ADediting_1286254(100857673, +), ADediting_1286255(100857677, +), ADediting_1286256(100857686, +), ADediting_1286257(100857691, +), ADediting_1286258(100857696, +), ADediting_1286259(100857699, +), ADediting_1286260(100857710, +), ADediting_1286261(100857765, +), ADediting_1286262(100857791, +), ADediting_1286263(100857809, +), ADediting_1286264(100857814, +), ADediting_1286265(100857818, +), ADediting_1286266(100857830, +), ADediting_1286267(100857960, +), ADediting_1286268(100857969, +), ADediting_1286269(100857989, +), ADediting_1286270(100857995, +), ADediting_1286271(100858001, +), ADediting_1286272(100858005, +), ADediting_1286273(100858028, +), ADediting_1286274(100858036, +), ADediting_1286275(100858037, +), ADediting_1286276(100858048, +), ADediting_1286277(100858065, +), ADediting_1286278(100858066, +), ADediting_1286279(100858102, +), ADediting_1286280(100858192, +), ADediting_1286281(100858197, +), ADediting_1286282(100858226, +), ADediting_1286283(100858241, +), ADediting_1286284(100858251, +), ADediting_1286285(100858253, +), ADediting_1286286(100858285, +), ADediting_1286287(100858292, +), ADediting_1286288(100858318, +), ADediting_1286289(100858344, +), ADediting_1286290(100858347, +), ADediting_1286291(100858377, +), ADediting_1286292(100858451, +), ADediting_1286293(100858496, +), ADediting_1286294(100858510, +), ADediting_1286295(100858515, +), ADediting_1286296(100858572, +), ADediting_1585094(100854900, +), ADediting_1585095(100854908, +), ADediting_1585096(100854917, +), ADediting_1585097(100854949, +), ADediting_1585098(100854988, +), ADediting_1585099(100855002, +), ADediting_1585100(100855004, +), ADediting_1585101(100855012, +), ADediting_1585102(100855013, +), ADediting_1585103(100855060, +), ADediting_1585104(100855075, +), ADediting_1585105(100855084, +), ADediting_1585106(100855092, +), ADediting_1585107(100855151, +), ADediting_1585108(100855178, +), ADediting_1585109(100855209, +), ADediting_1585110(100855235, +), ADediting_1585111(100855240, +), ADediting_1585112(100855314, +), ADediting_1585113(100855322, +), ADediting_1585114(100855343, +), ADediting_1585115(100855344, +), ADediting_1585116(100856251, +), ADediting_1585117(100856325, +), ADediting_1585118(100856357, +), ADediting_1585119(100856360, +), ADediting_1585120(100856373, +), ADediting_1585121(100856382, +), ADediting_1585122(100856482, +), ADediting_1585123(100856678, +), ADediting_1585124(100856783, +), ADediting_1585125(100856786, +), ADediting_1585126(100857667, +), ADediting_1585127(100857680, +), ADediting_1585128(100857683, +), ADediting_1585129(100857797, +), ADediting_1585130(100857808, +), ADediting_1585131(100857878, +), ADediting_1585132(100857903, +), ADediting_1585133(100858162, +), ADediting_1585134(100858247, +), ADediting_1585135(100858261, +), ADediting_1585136(100858297, +), ADediting_1585137(100858332, +), ADediting_1585138(100858469, +), ADediting_1663218(100856614, +), |
Top |
RNA editing positional annotations for SLC12A9 using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_1286157 | chr7_100829262_+ | intergenic |
| ADediting_1286158 | chr7_100831446_+ | intergenic |
| ADediting_1286159 | chr7_100831448_+ | intergenic |
| ADediting_1286160 | chr7_100835180_+ | intergenic |
| ADediting_1286161 | chr7_100854909_+ | intronic |
| ADediting_1286162 | chr7_100854914_+ | intronic |
| ADediting_1286163 | chr7_100854944_+ | intronic |
| ADediting_1286164 | chr7_100854954_+ | intronic |
| ADediting_1286165 | chr7_100854962_+ | intronic |
| ADediting_1286166 | chr7_100854963_+ | intronic |
| ADediting_1286167 | chr7_100854968_+ | intronic |
| ADediting_1286168 | chr7_100854978_+ | intronic |
| ADediting_1286169 | chr7_100854982_+ | intronic |
| ADediting_1286170 | chr7_100855008_+ | intronic |
| ADediting_1286171 | chr7_100855017_+ | intronic |
| ADediting_1286172 | chr7_100855033_+ | intronic |
| ADediting_1286173 | chr7_100855049_+ | intronic |
| ADediting_1286174 | chr7_100855053_+ | intronic |
| ADediting_1286175 | chr7_100855076_+ | intronic |
| ADediting_1286176 | chr7_100855085_+ | intronic |
| ADediting_1286177 | chr7_100855113_+ | intronic |
| ADediting_1286178 | chr7_100855114_+ | intronic |
| ADediting_1286179 | chr7_100855121_+ | intronic |
| ADediting_1286180 | chr7_100855135_+ | intronic |
| ADediting_1286181 | chr7_100855190_+ | intronic |
| ADediting_1286182 | chr7_100855192_+ | intronic |
| ADediting_1286183 | chr7_100855197_+ | intronic |
| ADediting_1286184 | chr7_100855222_+ | intronic |
| ADediting_1286185 | chr7_100855223_+ | intronic |
| ADediting_1286186 | chr7_100855252_+ | intronic |
| ADediting_1286187 | chr7_100855256_+ | intronic |
| ADediting_1286188 | chr7_100855268_+ | intronic |
| ADediting_1286189 | chr7_100855272_+ | intronic |
| ADediting_1286190 | chr7_100855305_+ | intronic |
| ADediting_1286191 | chr7_100855331_+ | intronic |
| ADediting_1286192 | chr7_100855356_+ | intronic |
| ADediting_1286193 | chr7_100855357_+ | intronic |
| ADediting_1286194 | chr7_100855361_+ | intronic |
| ADediting_1286195 | chr7_100855374_+ | intronic |
| ADediting_1286196 | chr7_100855383_+ | intronic |
| ADediting_1286197 | chr7_100855384_+ | intronic |
| ADediting_1286198 | chr7_100855385_+ | intronic |
| ADediting_1286199 | chr7_100855390_+ | intronic |
| ADediting_1286200 | chr7_100855396_+ | intronic |
| ADediting_1286201 | chr7_100856032_+ | intronic |
| ADediting_1286202 | chr7_100856213_+ | intronic |
| ADediting_1286203 | chr7_100856261_+ | intronic |
| ADediting_1286204 | chr7_100856288_+ | intronic |
| ADediting_1286205 | chr7_100856307_+ | intronic |
| ADediting_1286206 | chr7_100856308_+ | intronic |
| ADediting_1286207 | chr7_100856311_+ | intronic |
| ADediting_1286208 | chr7_100856312_+ | intronic |
| ADediting_1286209 | chr7_100856337_+ | intronic |
| ADediting_1286210 | chr7_100856347_+ | intronic |
| ADediting_1286211 | chr7_100856349_+ | intronic |
| ADediting_1286212 | chr7_100856353_+ | intronic |
| ADediting_1286213 | chr7_100856388_+ | intronic |
| ADediting_1286214 | chr7_100856391_+ | intronic |
| ADediting_1286215 | chr7_100856417_+ | intronic |
| ADediting_1286216 | chr7_100856443_+ | intronic |
| ADediting_1286217 | chr7_100856460_+ | intronic |
| ADediting_1286218 | chr7_100856539_+ | intronic |
| ADediting_1286219 | chr7_100856546_+ | intronic |
| ADediting_1286220 | chr7_100856554_+ | intronic |
| ADediting_1286221 | chr7_100856558_+ | intronic |
| ADediting_1286222 | chr7_100856576_+ | intronic |
| ADediting_1286223 | chr7_100856589_+ | intronic |
| ADediting_1286224 | chr7_100856590_+ | intronic |
| ADediting_1286225 | chr7_100856594_+ | intronic |
| ADediting_1286226 | chr7_100856595_+ | intronic |
| ADediting_1286227 | chr7_100856627_+ | intronic |
| ADediting_1286228 | chr7_100856632_+ | intronic |
| ADediting_1286229 | chr7_100856643_+ | intronic |
| ADediting_1286230 | chr7_100856652_+ | intronic |
| ADediting_1286231 | chr7_100856654_+ | intronic |
| ADediting_1286232 | chr7_100856658_+ | intronic |
| ADediting_1286233 | chr7_100856679_+ | intronic |
| ADediting_1286234 | chr7_100856686_+ | intronic |
| ADediting_1286235 | chr7_100856697_+ | intronic |
| ADediting_1286236 | chr7_100856709_+ | intronic |
| ADediting_1286237 | chr7_100856711_+ | intronic |
| ADediting_1286238 | chr7_100856712_+ | intronic |
| ADediting_1286239 | chr7_100856721_+ | intronic |
| ADediting_1286240 | chr7_100856726_+ | intronic |
| ADediting_1286241 | chr7_100856732_+ | intronic |
| ADediting_1286242 | chr7_100856733_+ | intronic |
| ADediting_1286243 | chr7_100856734_+ | intronic |
| ADediting_1286244 | chr7_100856746_+ | intronic |
| ADediting_1286245 | chr7_100856747_+ | intronic |
| ADediting_1286246 | chr7_100856750_+ | intronic |
| ADediting_1286247 | chr7_100856751_+ | intronic |
| ADediting_1286248 | chr7_100856759_+ | intronic |
| ADediting_1286249 | chr7_100856773_+ | intronic |
| ADediting_1286250 | chr7_100856774_+ | intronic |
| ADediting_1286251 | chr7_100857642_+ | intronic |
| ADediting_1286252 | chr7_100857650_+ | intronic |
| ADediting_1286253 | chr7_100857651_+ | intronic |
| ADediting_1286254 | chr7_100857673_+ | intronic |
| ADediting_1286255 | chr7_100857677_+ | intronic |
| ADediting_1286256 | chr7_100857686_+ | intronic |
| ADediting_1286257 | chr7_100857691_+ | intronic |
| ADediting_1286258 | chr7_100857696_+ | intronic |
| ADediting_1286259 | chr7_100857699_+ | intronic |
| ADediting_1286260 | chr7_100857710_+ | intronic |
| ADediting_1286261 | chr7_100857765_+ | intronic |
| ADediting_1286262 | chr7_100857791_+ | intronic |
| ADediting_1286263 | chr7_100857809_+ | intronic |
| ADediting_1286264 | chr7_100857814_+ | intronic |
| ADediting_1286265 | chr7_100857818_+ | intronic |
| ADediting_1286266 | chr7_100857830_+ | intronic |
| ADediting_1286267 | chr7_100857960_+ | intronic |
| ADediting_1286268 | chr7_100857969_+ | intronic |
| ADediting_1286269 | chr7_100857989_+ | intronic |
| ADediting_1286270 | chr7_100857995_+ | intronic |
| ADediting_1286271 | chr7_100858001_+ | intronic |
| ADediting_1286272 | chr7_100858005_+ | intronic |
| ADediting_1286273 | chr7_100858028_+ | intronic |
| ADediting_1286274 | chr7_100858036_+ | intronic |
| ADediting_1286275 | chr7_100858037_+ | intronic |
| ADediting_1286276 | chr7_100858048_+ | intronic |
| ADediting_1286277 | chr7_100858065_+ | intronic |
| ADediting_1286278 | chr7_100858066_+ | intronic |
| ADediting_1286279 | chr7_100858102_+ | intronic |
| ADediting_1286280 | chr7_100858192_+ | intronic |
| ADediting_1286281 | chr7_100858197_+ | intronic |
| ADediting_1286282 | chr7_100858226_+ | intronic |
| ADediting_1286283 | chr7_100858241_+ | intronic |
| ADediting_1286284 | chr7_100858251_+ | intronic |
| ADediting_1286285 | chr7_100858253_+ | intronic |
| ADediting_1286286 | chr7_100858285_+ | intronic |
| ADediting_1286287 | chr7_100858292_+ | intronic |
| ADediting_1286288 | chr7_100858318_+ | intronic |
| ADediting_1286289 | chr7_100858344_+ | intronic |
| ADediting_1286290 | chr7_100858347_+ | intronic |
| ADediting_1286291 | chr7_100858377_+ | intronic |
| ADediting_1286292 | chr7_100858451_+ | intronic |
| ADediting_1286293 | chr7_100858496_+ | intronic |
| ADediting_1286294 | chr7_100858510_+ | intronic |
| ADediting_1286295 | chr7_100858515_+ | intronic |
| ADediting_1286296 | chr7_100858572_+ | intronic |
| ADediting_1585094 | chr7_100854900_+ | intronic |
| ADediting_1585095 | chr7_100854908_+ | intronic |
| ADediting_1585096 | chr7_100854917_+ | intronic |
| ADediting_1585097 | chr7_100854949_+ | intronic |
| ADediting_1585098 | chr7_100854988_+ | intronic |
| ADediting_1585099 | chr7_100855002_+ | intronic |
| ADediting_1585100 | chr7_100855004_+ | intronic |
| ADediting_1585101 | chr7_100855012_+ | intronic |
| ADediting_1585102 | chr7_100855013_+ | intronic |
| ADediting_1585103 | chr7_100855060_+ | intronic |
| ADediting_1585104 | chr7_100855075_+ | intronic |
| ADediting_1585105 | chr7_100855084_+ | intronic |
| ADediting_1585106 | chr7_100855092_+ | intronic |
| ADediting_1585107 | chr7_100855151_+ | intronic |
| ADediting_1585108 | chr7_100855178_+ | intronic |
| ADediting_1585109 | chr7_100855209_+ | intronic |
| ADediting_1585110 | chr7_100855235_+ | intronic |
| ADediting_1585111 | chr7_100855240_+ | intronic |
| ADediting_1585112 | chr7_100855314_+ | intronic |
| ADediting_1585113 | chr7_100855322_+ | intronic |
| ADediting_1585114 | chr7_100855343_+ | intronic |
| ADediting_1585115 | chr7_100855344_+ | intronic |
| ADediting_1585116 | chr7_100856251_+ | intronic |
| ADediting_1585117 | chr7_100856325_+ | intronic |
| ADediting_1585118 | chr7_100856357_+ | intronic |
| ADediting_1585119 | chr7_100856360_+ | intronic |
| ADediting_1585120 | chr7_100856373_+ | intronic |
| ADediting_1585121 | chr7_100856382_+ | intronic |
| ADediting_1585122 | chr7_100856482_+ | intronic |
| ADediting_1585123 | chr7_100856678_+ | intronic |
| ADediting_1585124 | chr7_100856783_+ | intronic |
| ADediting_1585125 | chr7_100856786_+ | intronic |
| ADediting_1585126 | chr7_100857667_+ | intronic |
| ADediting_1585127 | chr7_100857680_+ | intronic |
| ADediting_1585128 | chr7_100857683_+ | intronic |
| ADediting_1585129 | chr7_100857797_+ | intronic |
| ADediting_1585130 | chr7_100857808_+ | intronic |
| ADediting_1585131 | chr7_100857878_+ | intronic |
| ADediting_1585132 | chr7_100857903_+ | intronic |
| ADediting_1585133 | chr7_100858162_+ | intronic |
| ADediting_1585134 | chr7_100858247_+ | intronic |
| ADediting_1585135 | chr7_100858261_+ | intronic |
| ADediting_1585136 | chr7_100858297_+ | intronic |
| ADediting_1585137 | chr7_100858332_+ | intronic |
| ADediting_1585138 | chr7_100858469_+ | intronic |
| ADediting_1663218 | chr7_100856614_+ | intronic |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_1286157 | chr7_100829262_+ | SINE | Alu | Name=AluSz |
| ADediting_1286158 | chr7_100831446_+ | SINE | Alu | Name=AluSp |
| ADediting_1286159 | chr7_100831448_+ | SINE | Alu | Name=AluSp |
| ADediting_1286160 | chr7_100835180_+ | SINE | Alu | Name=AluSx |
| ADediting_1286161 | chr7_100854909_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1286162 | chr7_100854914_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1286163 | chr7_100854944_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1286164 | chr7_100854954_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1286165 | chr7_100854962_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1286166 | chr7_100854963_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1286167 | chr7_100854968_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1286168 | chr7_100854978_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1286169 | chr7_100854982_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1286170 | chr7_100855008_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1286171 | chr7_100855017_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1286172 | chr7_100855033_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1286173 | chr7_100855049_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1286174 | chr7_100855053_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1286175 | chr7_100855076_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1286176 | chr7_100855085_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1286177 | chr7_100855113_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1286178 | chr7_100855114_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1286179 | chr7_100855121_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1286180 | chr7_100855135_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1286181 | chr7_100855190_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1286182 | chr7_100855192_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1286183 | chr7_100855197_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1286184 | chr7_100855222_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1286185 | chr7_100855223_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1286186 | chr7_100855252_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1286187 | chr7_100855256_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1286188 | chr7_100855268_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1286189 | chr7_100855272_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1286190 | chr7_100855305_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1286191 | chr7_100855331_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1286192 | chr7_100855356_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1286193 | chr7_100855357_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1286194 | chr7_100855361_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1286195 | chr7_100855374_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1286196 | chr7_100855383_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1286197 | chr7_100855384_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1286198 | chr7_100855385_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1286199 | chr7_100855390_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1286200 | chr7_100855396_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1286201 | chr7_100856032_+ | LINE | L2 | Name=L2c |
| ADediting_1286202 | chr7_100856213_+ | SINE | Alu | Name=AluSz |
| ADediting_1286203 | chr7_100856261_+ | SINE | Alu | Name=AluSz |
| ADediting_1286204 | chr7_100856288_+ | SINE | Alu | Name=AluSz |
| ADediting_1286205 | chr7_100856307_+ | SINE | Alu | Name=AluSz |
| ADediting_1286206 | chr7_100856308_+ | SINE | Alu | Name=AluSz |
| ADediting_1286207 | chr7_100856311_+ | SINE | Alu | Name=AluSz |
| ADediting_1286208 | chr7_100856312_+ | SINE | Alu | Name=AluSz |
| ADediting_1286209 | chr7_100856337_+ | SINE | Alu | Name=AluSz |
| ADediting_1286210 | chr7_100856347_+ | SINE | Alu | Name=AluSz |
| ADediting_1286211 | chr7_100856349_+ | SINE | Alu | Name=AluSz |
| ADediting_1286212 | chr7_100856353_+ | SINE | Alu | Name=AluSz |
| ADediting_1286213 | chr7_100856388_+ | SINE | Alu | Name=AluSz |
| ADediting_1286214 | chr7_100856391_+ | SINE | Alu | Name=AluSz |
| ADediting_1286215 | chr7_100856417_+ | SINE | Alu | Name=AluSz |
| ADediting_1286216 | chr7_100856443_+ | SINE | Alu | Name=AluSz |
| ADediting_1286217 | chr7_100856460_+ | SINE | Alu | Name=AluSz |
| ADediting_1286218 | chr7_100856539_+ | SINE | Alu | Name=AluJb |
| ADediting_1286219 | chr7_100856546_+ | SINE | Alu | Name=AluJb |
| ADediting_1286220 | chr7_100856554_+ | SINE | Alu | Name=AluJb |
| ADediting_1286221 | chr7_100856558_+ | SINE | Alu | Name=AluJb |
| ADediting_1286222 | chr7_100856576_+ | SINE | Alu | Name=AluJb |
| ADediting_1286223 | chr7_100856589_+ | SINE | Alu | Name=AluJb |
| ADediting_1286224 | chr7_100856590_+ | SINE | Alu | Name=AluJb |
| ADediting_1286225 | chr7_100856594_+ | SINE | Alu | Name=AluJb |
| ADediting_1286226 | chr7_100856595_+ | SINE | Alu | Name=AluJb |
| ADediting_1286227 | chr7_100856627_+ | SINE | Alu | Name=AluJb |
| ADediting_1286228 | chr7_100856632_+ | SINE | Alu | Name=AluJb |
| ADediting_1286229 | chr7_100856643_+ | SINE | Alu | Name=AluJb |
| ADediting_1286230 | chr7_100856652_+ | SINE | Alu | Name=AluJb |
| ADediting_1286231 | chr7_100856654_+ | SINE | Alu | Name=AluJb |
| ADediting_1286232 | chr7_100856658_+ | SINE | Alu | Name=AluJb |
| ADediting_1286233 | chr7_100856679_+ | SINE | Alu | Name=AluJb |
| ADediting_1286234 | chr7_100856686_+ | SINE | Alu | Name=AluJb |
| ADediting_1286235 | chr7_100856697_+ | SINE | Alu | Name=AluJb |
| ADediting_1286236 | chr7_100856709_+ | SINE | Alu | Name=AluJb |
| ADediting_1286237 | chr7_100856711_+ | SINE | Alu | Name=AluJb |
| ADediting_1286238 | chr7_100856712_+ | SINE | Alu | Name=AluJb |
| ADediting_1286239 | chr7_100856721_+ | SINE | Alu | Name=AluJb |
| ADediting_1286240 | chr7_100856726_+ | SINE | Alu | Name=AluJb |
| ADediting_1286241 | chr7_100856732_+ | SINE | Alu | Name=AluJb |
| ADediting_1286242 | chr7_100856733_+ | SINE | Alu | Name=AluJb |
| ADediting_1286243 | chr7_100856734_+ | SINE | Alu | Name=AluJb |
| ADediting_1286244 | chr7_100856746_+ | SINE | Alu | Name=AluJb |
| ADediting_1286245 | chr7_100856747_+ | SINE | Alu | Name=AluJb |
| ADediting_1286246 | chr7_100856750_+ | SINE | Alu | Name=AluJb |
| ADediting_1286247 | chr7_100856751_+ | SINE | Alu | Name=AluJb |
| ADediting_1286248 | chr7_100856759_+ | SINE | Alu | Name=AluJb |
| ADediting_1286249 | chr7_100856773_+ | SINE | Alu | Name=AluJb |
| ADediting_1286250 | chr7_100856774_+ | SINE | Alu | Name=AluJb |
| ADediting_1286251 | chr7_100857642_+ | SINE | Alu | Name=AluSx |
| ADediting_1286252 | chr7_100857650_+ | SINE | Alu | Name=AluSx |
| ADediting_1286253 | chr7_100857651_+ | SINE | Alu | Name=AluSx |
| ADediting_1286254 | chr7_100857673_+ | SINE | Alu | Name=AluSx |
| ADediting_1286255 | chr7_100857677_+ | SINE | Alu | Name=AluSx |
| ADediting_1286256 | chr7_100857686_+ | SINE | Alu | Name=AluSx |
| ADediting_1286257 | chr7_100857691_+ | SINE | Alu | Name=AluSx |
| ADediting_1286258 | chr7_100857696_+ | SINE | Alu | Name=AluSx |
| ADediting_1286259 | chr7_100857699_+ | SINE | Alu | Name=AluSx |
| ADediting_1286260 | chr7_100857710_+ | SINE | Alu | Name=AluSx |
| ADediting_1286261 | chr7_100857765_+ | SINE | Alu | Name=AluSx |
| ADediting_1286262 | chr7_100857791_+ | SINE | Alu | Name=AluSx |
| ADediting_1286263 | chr7_100857809_+ | SINE | Alu | Name=AluSx |
| ADediting_1286264 | chr7_100857814_+ | SINE | Alu | Name=AluSx |
| ADediting_1286265 | chr7_100857818_+ | SINE | Alu | Name=AluSx |
| ADediting_1286266 | chr7_100857830_+ | SINE | Alu | Name=AluSx |
| ADediting_1286269 | chr7_100857989_+ | SINE | Alu | Name=AluJo |
| ADediting_1286270 | chr7_100857995_+ | SINE | Alu | Name=AluJo |
| ADediting_1286271 | chr7_100858001_+ | SINE | Alu | Name=AluJo |
| ADediting_1286272 | chr7_100858005_+ | SINE | Alu | Name=AluJo |
| ADediting_1286273 | chr7_100858028_+ | SINE | Alu | Name=AluJo |
| ADediting_1286274 | chr7_100858036_+ | SINE | Alu | Name=AluJo |
| ADediting_1286275 | chr7_100858037_+ | SINE | Alu | Name=AluJo |
| ADediting_1286276 | chr7_100858048_+ | SINE | Alu | Name=AluJo |
| ADediting_1286277 | chr7_100858065_+ | SINE | Alu | Name=AluJo |
| ADediting_1286278 | chr7_100858066_+ | SINE | Alu | Name=AluJo |
| ADediting_1286279 | chr7_100858102_+ | SINE | Alu | Name=AluJo |
| ADediting_1286280 | chr7_100858192_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1286281 | chr7_100858197_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1286282 | chr7_100858226_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1286283 | chr7_100858241_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1286284 | chr7_100858251_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1286285 | chr7_100858253_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1286286 | chr7_100858285_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1286287 | chr7_100858292_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1286288 | chr7_100858318_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1286289 | chr7_100858344_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1286290 | chr7_100858347_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1286291 | chr7_100858377_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1286292 | chr7_100858451_+ | SINE | Alu | Name=AluJo |
| ADediting_1286293 | chr7_100858496_+ | SINE | Alu | Name=AluJo |
| ADediting_1286294 | chr7_100858510_+ | SINE | Alu | Name=AluJo |
| ADediting_1286295 | chr7_100858515_+ | SINE | Alu | Name=AluJo |
| ADediting_1286296 | chr7_100858572_+ | SINE | Alu | Name=AluJo |
| ADediting_1585094 | chr7_100854900_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1585095 | chr7_100854908_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1585096 | chr7_100854917_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1585097 | chr7_100854949_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1585098 | chr7_100854988_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1585099 | chr7_100855002_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1585100 | chr7_100855004_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1585101 | chr7_100855012_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1585102 | chr7_100855013_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1585103 | chr7_100855060_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1585104 | chr7_100855075_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1585105 | chr7_100855084_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1585106 | chr7_100855092_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1585107 | chr7_100855151_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1585108 | chr7_100855178_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1585109 | chr7_100855209_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1585110 | chr7_100855235_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1585111 | chr7_100855240_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1585112 | chr7_100855314_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1585113 | chr7_100855322_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1585114 | chr7_100855343_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1585115 | chr7_100855344_+ | SINE | Alu | Name=AluJr4 |
| ADediting_1585116 | chr7_100856251_+ | SINE | Alu | Name=AluSz |
| ADediting_1585117 | chr7_100856325_+ | SINE | Alu | Name=AluSz |
| ADediting_1585118 | chr7_100856357_+ | SINE | Alu | Name=AluSz |
| ADediting_1585119 | chr7_100856360_+ | SINE | Alu | Name=AluSz |
| ADediting_1585120 | chr7_100856373_+ | SINE | Alu | Name=AluSz |
| ADediting_1585121 | chr7_100856382_+ | SINE | Alu | Name=AluSz |
| ADediting_1585122 | chr7_100856482_+ | SINE | Alu | Name=AluSz |
| ADediting_1585123 | chr7_100856678_+ | SINE | Alu | Name=AluJb |
| ADediting_1585124 | chr7_100856783_+ | SINE | Alu | Name=AluJb |
| ADediting_1585125 | chr7_100856786_+ | SINE | Alu | Name=AluJb |
| ADediting_1585126 | chr7_100857667_+ | SINE | Alu | Name=AluSx |
| ADediting_1585127 | chr7_100857680_+ | SINE | Alu | Name=AluSx |
| ADediting_1585128 | chr7_100857683_+ | SINE | Alu | Name=AluSx |
| ADediting_1585129 | chr7_100857797_+ | SINE | Alu | Name=AluSx |
| ADediting_1585130 | chr7_100857808_+ | SINE | Alu | Name=AluSx |
| ADediting_1585131 | chr7_100857878_+ | SINE | Alu | Name=AluSx |
| ADediting_1585132 | chr7_100857903_+ | SINE | Alu | Name=AluSx |
| ADediting_1585133 | chr7_100858162_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1585134 | chr7_100858247_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1585135 | chr7_100858261_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1585136 | chr7_100858297_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1585137 | chr7_100858332_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1585138 | chr7_100858469_+ | SINE | Alu | Name=AluJo |
| ADediting_1663218 | chr7_100856614_+ | SINE | Alu | Name=AluJb |
Top |
RNA A-to-I editing events in the alternative splicing sites for SLC12A9 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| ES | ADediting_1286219 | chr7_100856546_+ | 100856540:100856562 | 3ss | 14i | GGTCTCACTCTGTCACCAAGGCT | 0.80 | GGTCTCGCTCTGTCACCAAGGCT | 1.54 |
| ES | ADediting_1286219 | chr7_100856546_+ | 100856540:100856562 | 3ss | 14i | GGTCTCACTCTGTCACCAAGGCT | 0.80 | GGTCTCGCTCTGTCACCAAGGCT | 1.54 |
| ES | ADediting_1286220 | chr7_100856554_+ | 100856540:100856562 | 3ss | 6i | GGTCTCACTCTGTCACCAAGGCT | 0.80 | GGTCTCACTCTGTCGCCAAGGCT | -0.18 |
| ES | ADediting_1286221 | chr7_100856558_+ | 100856540:100856562 | 3ss | 2i | GGTCTCACTCTGTCACCAAGGCT | 0.80 | GGTCTCACTCTGTCACCAGGGCT | -7.16 |
| ES | ADediting_1286221 | chr7_100856558_+ | 100856540:100856562 | 3ss | 2i | GGTCTCACTCTGTCACCAAGGCT | 0.80 | GGTCTCACTCTGTCACCAGGGCT | -7.16 |
| ES | ADediting_1286239 | chr7_100856721_+ | 100856720:100856728 | 5ss | 2e | CAGGTTAGT | 8.02 | CGGGTTAGT | 4.94 |
| ES | ADediting_1286240 | chr7_100856726_+ | 100856720:100856728 | 5ss | 4i | CAGGTTAGT | 8.02 | CAGGTTGGT | 8.08 |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for SLC12A9 |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
Top |
Protein coding region RNA A-to-I editings for SLC12A9 |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
Top |
The effects of the RNA editing to the miRNA binding sites for SLC12A9 |
| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_527135 | chr16_24203190_+ | ENSG00000146828.18 | ENST00000354161.8 | SLC12A9-201 | hsa-miR-1273h-3p | chr7 | 100866834 | 100866840 | 7mer-m8 | 100866822 | 100866841 | 167 | -38.41 |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| Differentially expressed gene-miRNA network |
Top |
The effects of the RNA editing to the stability of the RNA structures for SLC12A9 |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
Top |
Relation with ADAR for SLC12A9 |
| Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| CER | ADediting_1286161 | chr7_100854909_+ | 0.000355053029260312 | 0.28781752656077 | 1.7018005605628e-07 | 0.411354137498377 | 0.168036237207114 | 0.113142138947985 |
| CER | ADediting_1286162 | chr7_100854914_+ | 0.000534898024442467 | 0.279408625418625 | 9.90227901173872e-06 | 0.352152632170166 | 0.313246239147376 | 0.0828898971507077 |
| CER | ADediting_1286163 | chr7_100854944_+ | 0.000194515920499713 | 0.299712519806791 | 3.97086792094631e-06 | 0.366516759538596 | 0.243504728430352 | 0.0958079084426861 |
| CER | ADediting_1286164 | chr7_100854954_+ | 0.0030367092831654 | 0.240459732572618 | 2.26763463803066e-05 | 0.338494133722638 | 0.405104270288992 | 0.0684695554296066 |
| TCX | ADediting_1286169 | chr7_100854982_+ | 0.0316846293564913 | 0.175517627966138 | 0.985506653578449 | -0.00149573616958292 | 4.50151912962475e-05 | 0.326684870617255 |
| CER | ADediting_1286171 | chr7_100855017_+ | 0.000147020072179622 | 0.305076140881014 | 0.000458611906369369 | 0.282596740046412 | 0.376652288353305 | 0.0726975183060212 |
| TCX | ADediting_1286171 | chr7_100855017_+ | 0.188731671899225 | 0.107904497493712 | 0.654502205089786 | -0.0368353052828074 | 2.58884026734156e-05 | 0.336249857324622 |
| CER | ADediting_1286173 | chr7_100855049_+ | 5.626005367272e-05 | 0.322737591814731 | 9.25814761493098e-05 | 0.313717431342012 | 0.10529991391881 | 0.132771267644939 |
| CER | ADediting_1286175 | chr7_100855076_+ | 0.00453594990828857 | 0.23054179973841 | 7.25543772461088e-05 | 0.318167370008041 | 0.836884625727635 | -0.0169506261734713 |
| CER | ADediting_1286176 | chr7_100855085_+ | 0.0187107402646518 | 0.19179691400523 | 0.000161975186900839 | 0.303231766625276 | 0.863221474672089 | 0.0141841300089201 |
| CER | ADediting_1286181 | chr7_100855190_+ | 7.42433112341568e-07 | 0.391206343895126 | 1.17653733341e-07 | 0.416201696768379 | 0.103061691508676 | 0.133624535812111 |
| CER | ADediting_1286182 | chr7_100855192_+ | 9.10821034054282e-06 | 0.353495927666997 | 3.61039224479749e-06 | 0.367973640843142 | 0.0838433609929246 | 0.141628980829722 |
| CER | ADediting_1286183 | chr7_100855197_+ | 0.000413134729895384 | 0.284739168774065 | 0.000171223309748715 | 0.302169085107651 | 0.678521790444532 | 0.03411779700828 |
| CER | ADediting_1286184 | chr7_100855222_+ | 0.00352831360739105 | 0.236797545093857 | 0.00017297285556676 | 0.301974079405191 | 0.985056510534751 | -0.00154219693688317 |
| CER | ADediting_1286185 | chr7_100855223_+ | 5.15842307690468e-06 | 0.362474302128433 | 4.71763051526866e-05 | 0.32585929986317 | 0.83260885158307 | -0.017401476505886 |
| CER | ADediting_1286186 | chr7_100855252_+ | 8.88975735043081e-05 | 0.31446357766491 | 0.000244721241163754 | 0.295234458281108 | 0.48297262386336 | 0.0577146841262853 |
| CER | ADediting_1286187 | chr7_100855256_+ | 5.34823512318071e-07 | 0.395808888008401 | 3.64841205797014e-05 | 0.330355397168504 | 0.072922870778667 | 0.146856984886225 |
| CER | ADediting_1286189 | chr7_100855272_+ | 2.98878933363239e-08 | 0.433559193376845 | 1.73586202411977e-08 | 0.44018100427146 | 0.0585217061117254 | 0.154824789728387 |
| CER | ADediting_1286194 | chr7_100855361_+ | 0.000692079811367866 | 0.273984331606862 | 0.000137350296274466 | 0.306364187989233 | 0.088694228858262 | -0.139480891293552 |
| CER | ADediting_1286195 | chr7_100855374_+ | 0.00479595400169548 | 0.229131873534582 | 0.000105860967106847 | 0.31124023562474 | 0.995139589911534 | -0.000501577738597877 |
| CER | ADediting_1286198 | chr7_100855385_+ | 0.000972383165785672 | 0.266650499274123 | 6.53805463748476e-06 | 0.358764489710087 | 0.10815487917138 | 0.131703313093085 |
| CER | ADediting_1286199 | chr7_100855390_+ | 0.000130603640216944 | 0.307313945834216 | 4.80450886549966e-05 | 0.325537380861502 | 0.452683847212155 | 0.0617728314329318 |
| TCX | ADediting_1286199 | chr7_100855390_+ | 0.16067817230266 | 0.115119541193713 | 0.328043608021841 | -0.0804016596434775 | 1.12699232793926e-05 | 0.350061429260642 |
| CER | ADediting_1286200 | chr7_100855396_+ | 0.00141284810043057 | 0.258348862731152 | 1.98444158459607e-05 | 0.340736741237846 | 0.53205018534054 | 0.0514175593010224 |
| DLPFC | ADediting_1286201 | chr7_100856032_+ | 5.76486105813195e-07 | 0.279375635147001 | 3.55485681651262e-08 | 0.306703123854466 | 0.479122390297961 | 0.040342104994106 |
| CER | ADediting_1286203 | chr7_100856261_+ | 0.0459584175020914 | 0.163225257234431 | 3.48847172629159e-07 | 0.401702574403081 | 0.00207731319237673 | 0.249494463019895 |
| CER | ADediting_1286204 | chr7_100856288_+ | 0.0621610014261046 | 0.152671650418359 | 6.45490742466222e-06 | 0.358966015750794 | 0.0129231185222935 | 0.20255720777557 |
| CER | ADediting_1286205 | chr7_100856307_+ | 0.00243976743057174 | 0.245707184238336 | 1.90776804763906e-05 | 0.341395871593161 | 0.121771316053959 | 0.126893394501438 |
| CER | ADediting_1286206 | chr7_100856308_+ | 0.110564108643212 | 0.130819147055561 | 8.86421067726675e-05 | 0.31451638662287 | 0.0621936132967944 | 0.152652828727503 |
| CER | ADediting_1286207 | chr7_100856311_+ | 0.00148632732061989 | 0.257201546418509 | 6.8743487549477e-08 | 0.42312524713703 | 0.172085009527864 | 0.11208142169936 |
| CER | ADediting_1286208 | chr7_100856312_+ | 0.014132577784731 | 0.200002575651524 | 2.60992252007009e-05 | 0.336111887919902 | 0.0672148873082002 | 0.149846651218269 |
| CER | ADediting_1286209 | chr7_100856337_+ | 0.00264584207959751 | 0.24377591576464 | 8.89812552096584e-07 | 0.388635235629533 | 0.0218737019393903 | 0.187095309903815 |
| CER | ADediting_1286210 | chr7_100856347_+ | 0.00645535670834622 | 0.221473833813619 | 1.48469846208006e-06 | 0.381245789148899 | 0.000636398506406984 | 0.275762486151283 |
| CER | ADediting_1286212 | chr7_100856353_+ | 0.000234312170597609 | 0.296087778677997 | 2.55837466579535e-09 | 0.462449293688201 | 0.0225636463330826 | 0.186148390620317 |
| CER | ADediting_1286216 | chr7_100856443_+ | 0.00922203142563553 | 0.21194433341274 | 1.82106016427034e-07 | 0.410456248349556 | 1.40609653228119e-05 | 0.346450026077252 |
| CER | ADediting_1286217 | chr7_100856460_+ | 0.0566640557492924 | 0.155966570834404 | 2.73660876387943e-06 | 0.372175617409457 | 0.00176414267068126 | 0.253285555590537 |
| DLPFC | ADediting_1286219 | chr7_100856546_+ | 0.0243006138077245 | 0.127915278283316 | 0.417961597842901 | 0.0461647542756454 | 3.74523481610161e-10 | 0.34612855528766 |
| CER | ADediting_1286221 | chr7_100856558_+ | 0.01756206398405 | 0.193676007488974 | 4.82111777639432e-07 | 0.397250532383057 | 0.00939105774881411 | 0.211448610244754 |
| CER | ADediting_1286222 | chr7_100856576_+ | 0.00249195582200168 | 0.245204515089986 | 2.61162553203086e-11 | 0.510055755706422 | 0.0275386560885824 | 0.179972889089313 |
| CER | ADediting_1286224 | chr7_100856590_+ | 0.086115161124897 | 0.14061093083072 | 0.000187300424876961 | 0.300442835563758 | 0.612039205224584 | 0.0417409582776123 |
| CER | ADediting_1286226 | chr7_100856595_+ | 0.00635445245967566 | 0.221886050393627 | 6.17653243772804e-08 | 0.424486009996919 | 0.00292484247645142 | 0.241367458096749 |
| CER | ADediting_1286227 | chr7_100856627_+ | 0.00156860482880272 | 0.25597669384964 | 8.24649354731655e-07 | 0.389717750021015 | 0.0218360622930609 | 0.187147704840949 |
| CER | ADediting_1286229 | chr7_100856643_+ | 0.00319737018902907 | 0.239207520499593 | 4.96857296908221e-09 | 0.454909173936802 | 2.35723388947009e-05 | 0.337839419760132 |
| CER | ADediting_1286230 | chr7_100856652_+ | 0.00453229255051 | 0.230562144131878 | 5.77776500108184e-07 | 0.394731133623826 | 0.000274204538127064 | 0.292988585065946 |
| CER | ADediting_1286232 | chr7_100856658_+ | 0.00851547090418398 | 0.214107598816885 | 2.23094635221507e-08 | 0.437140676270324 | 0.00752811079459751 | 0.217413534932268 |
| CER | ADediting_1286238 | chr7_100856712_+ | 0.132521778868531 | 0.123382353674874 | 4.78743914521397e-06 | 0.363633024135065 | 0.0431569324839077 | 0.165355827930858 |
| CER | ADediting_1286240 | chr7_100856726_+ | 0.00039332949468872 | 0.285741163520699 | 1.05809831646598e-08 | 0.446093089448889 | 0.187803880258064 | 0.108130023051311 |
| CER | ADediting_1286241 | chr7_100856732_+ | 0.00015771105989177 | 0.303740916494681 | 5.62945335381152e-08 | 0.425660212815382 | 0.334747599872604 | 0.0792981268187286 |
| CER | ADediting_1286242 | chr7_100856733_+ | 0.000362391375723465 | 0.287403896790298 | 8.08194293925529e-11 | 0.49898701659764 | 0.232376767314644 | 0.0980960639734216 |
| CER | ADediting_1286243 | chr7_100856734_+ | 0.00582082468155233 | 0.224168201350418 | 1.0767671632331e-06 | 0.385903638778734 | 0.485597734161749 | 0.0573695738303222 |
| CER | ADediting_1286245 | chr7_100856747_+ | 0.0557425184380588 | 0.156544461209846 | 4.932263695242e-07 | 0.396934442342984 | 0.136620258288466 | 0.122101363941933 |
| CER | ADediting_1286246 | chr7_100856750_+ | 0.00230933542674045 | 0.247007410841012 | 4.58362483997033e-08 | 0.428246452281053 | 0.300386113390016 | 0.0851153296651638 |
| CER | ADediting_1286247 | chr7_100856751_+ | 0.000161439410824897 | 0.303295049451549 | 5.91914085504393e-11 | 0.502078450737551 | 0.00212288752250178 | 0.248986706979531 |
| CER | ADediting_1286248 | chr7_100856759_+ | 0.00584282637742604 | 0.224070487831865 | 4.27593920040748e-09 | 0.456630676562148 | 0.036659866294353 | 0.170782759927835 |
| CER | ADediting_1286249 | chr7_100856773_+ | 0.0103748511933879 | 0.208710515967084 | 6.22513495775919e-07 | 0.393687029148957 | 0.00882718179311443 | 0.21313439255752 |
| CER | ADediting_1286255 | chr7_100857677_+ | 0.00586400295961314 | 0.223976748375908 | 1.82462131085942e-07 | 0.410430311130802 | 0.0607084259246608 | 0.153518316380094 |
| CER | ADediting_1286256 | chr7_100857686_+ | 0.000303948870188539 | 0.290939332253387 | 6.04303522105079e-09 | 0.452649842008401 | 0.00267836692591041 | 0.243483627192094 |
| CER | ADediting_1286258 | chr7_100857696_+ | 0.0010783555724926 | 0.264378370076894 | 1.93871560564072e-08 | 0.438845527939509 | 0.00806868994629395 | 0.215559000478399 |
| CER | ADediting_1286260 | chr7_100857710_+ | 0.00439123556055739 | 0.231358245197434 | 2.26218518843759e-08 | 0.43697131444409 | 0.0662541189372148 | 0.150370022939417 |
| CER | ADediting_1286262 | chr7_100857791_+ | 0.00160659763382612 | 0.255430753337409 | 2.84936378924963e-09 | 0.461237955967048 | 0.00280050596799336 | 0.242413929292966 |
| CER | ADediting_1286263 | chr7_100857809_+ | 1.28698593876277e-05 | 0.34790005937374 | 1.57444845761437e-11 | 0.514888281628319 | 0.000297254490491251 | 0.291383792636709 |
| CER | ADediting_1286264 | chr7_100857814_+ | 0.000484948974751024 | 0.281444153821936 | 4.0234941569319e-06 | 0.366314647055519 | 0.0264463052120979 | 0.181241668567841 |
| TCX | ADediting_1286264 | chr7_100857814_+ | 0.521125838014712 | -0.0527923956663359 | 0.0499589715794917 | -0.160363131056497 | 4.72782480101364e-05 | 0.325821239189471 |
| CER | ADediting_1286265 | chr7_100857818_+ | 0.0807079419974043 | 0.143070995813308 | 1.28868007533304e-05 | 0.347878561473892 | 0.00183340205548888 | 0.252397230115605 |
| CER | ADediting_1286267 | chr7_100857960_+ | 0.00153667068376062 | 0.256444976863141 | 2.0513552475677e-07 | 0.408871246343315 | 0.00189910297781755 | 0.251582318312972 |
| CER | ADediting_1286269 | chr7_100857989_+ | 0.0125759025484032 | 0.203329254538199 | 7.0688070677604e-08 | 0.422769641904353 | 0.000953646893796779 | 0.267075669199054 |
| CER | ADediting_1286270 | chr7_100857995_+ | 0.0355057686124409 | 0.171830342699508 | 4.38471614012046e-07 | 0.398562863304369 | 0.0270575634719365 | 0.180526285804646 |
| TCX | ADediting_1286270 | chr7_100857995_+ | 0.818453581195463 | -0.0188978212017411 | 0.504831455757685 | -0.0548707144078588 | 3.08369735643712e-05 | 0.333259607201134 |
| CER | ADediting_1286271 | chr7_100858001_+ | 0.177305096811934 | 0.110740767695578 | 0.000108928463712135 | 0.310709489959945 | 0.14548536622281 | 0.119427765909804 |
| CER | ADediting_1286272 | chr7_100858005_+ | 0.0149693460603598 | 0.198344748934565 | 5.20225375464502e-08 | 0.426655888810525 | 0.0260055598229334 | 0.181766317911551 |
| CER | ADediting_1286273 | chr7_100858028_+ | 0.19686878807515 | 0.105960346442759 | 0.000111840726706199 | 0.310218364290829 | 0.0510386609612416 | 0.159623412968737 |
| CER | ADediting_1286275 | chr7_100858037_+ | 0.308455645825428 | 0.0837117807197867 | 5.06526943607194e-05 | 0.324602953173702 | 0.0479712500468498 | 0.161760385170942 |
| CER | ADediting_1286276 | chr7_100858048_+ | 0.10177404261094 | 0.134122048582064 | 3.40431602033621e-06 | 0.368869822887169 | 0.051442471939802 | 0.159350084811616 |
| CER | ADediting_1286278 | chr7_100858066_+ | 0.288619697643409 | 0.0872072412622393 | 1.54066782469314e-05 | 0.34494518084815 | 0.0213241475027369 | 0.187868134845762 |
| TCX | ADediting_1286278 | chr7_100858066_+ | 0.741981764108769 | 0.0271033183275934 | 3.20823574288513e-06 | 0.369771685078989 | 0.186585591328212 | -0.108427401586726 |
| CER | ADediting_1286280 | chr7_100858192_+ | 0.00651899575134031 | 0.221216794833228 | 4.20656839493171e-06 | 0.365630564305482 | 0.132451457004564 | 0.123404596069503 |
| CER | ADediting_1286282 | chr7_100858226_+ | 0.00281585875320548 | 0.24228246710858 | 9.90262276641594e-06 | 0.352152073031192 | 0.891740676676811 | 0.01120607396869 |
| CER | ADediting_1286286 | chr7_100858285_+ | 0.00406404564261989 | 0.233297050224925 | 4.51096621452352e-06 | 0.364553307888214 | 0.0878443584540069 | 0.139850336205641 |
| CER | ADediting_1286287 | chr7_100858292_+ | 0.0790003820423232 | 0.143875350799458 | 5.89869091939588e-05 | 0.32189268137237 | 0.431472027974916 | 0.0647057041244425 |
| CER | ADediting_1286288 | chr7_100858318_+ | 0.0156887266809763 | 0.196982892636139 | 0.000138048326171172 | 0.306268420429154 | 0.0904930308459042 | 0.138708155611377 |
| CER | ADediting_1286291 | chr7_100858377_+ | 0.00608864995833034 | 0.223000501732902 | 3.99252132043074e-07 | 0.399853374461478 | 0.0409005530244293 | 0.167157653903709 |
| CER | ADediting_1286293 | chr7_100858496_+ | 0.00352768686137493 | 0.236801913145455 | 4.79050212597925e-06 | 0.363623113539561 | 0.000955335394097871 | 0.267037040669526 |
| CER | ADediting_1286294 | chr7_100858510_+ | 0.00536882600273008 | 0.226252315152077 | 1.43561928934396e-05 | 0.346108587445899 | 0.0964290771923615 | 0.136241879131749 |
| CER | ADediting_1286295 | chr7_100858515_+ | 0.000366710294534709 | 0.287164068084885 | 1.5377143916107e-07 | 0.41269332504058 | 0.0103127006424447 | 0.208876568139038 |
| CER | ADediting_1286296 | chr7_100858572_+ | 0.00805747108324507 | 0.215596353634362 | 1.74508591653077e-05 | 0.342881341686831 | 0.0119124836100832 | 0.204857848477487 |
| CER | ADediting_1585095 | chr7_100854908_+ | 0.00228933310627297 | 0.247212665727668 | 0.000112871453582823 | 0.310047399278021 | 0.275192557822718 | 0.0896651774191737 |
| CER | ADediting_1585109 | chr7_100855209_+ | 2.99898370848326e-05 | 0.333737876910968 | 5.94352435712639e-06 | 0.360262345395183 | 0.852084204402121 | 0.0153519073350112 |
| CER | ADediting_1585111 | chr7_100855240_+ | 0.00121355734110227 | 0.261759464905116 | 8.27208101724703e-05 | 0.315782078070094 | 0.294263857191496 | 0.0861968607222439 |
| CER | ADediting_1585122 | chr7_100856482_+ | 0.0264715867445256 | 0.181211801622225 | 1.26132097714044e-05 | 0.348229048417372 | 0.0266831090727766 | 0.18096286579652 |
| CER | ADediting_1585126 | chr7_100857667_+ | 0.164919358672862 | 0.113971725951342 | 1.85053365031984e-05 | 0.34190437682995 | 0.000510656413673449 | 0.28037355709162 |
| CER | ADediting_1585129 | chr7_100857797_+ | 0.00685911768732406 | 0.21987976711727 | 7.93188542768565e-05 | 0.316548144859232 | 0.00786354979674425 | 0.216249408683372 |
| CER | ADediting_1585131 | chr7_100857878_+ | 0.0119103373947999 | 0.20486291357029 | 1.38621344447883e-08 | 0.442881266110011 | 0.00271523705357921 | 0.24315614682247 |
| Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 1.47195834498224e-11 | 0.371130109545366 | 4.71801876504298e-09 | 0.324890626350861 | 2.12400411043358e-48 | 0.707741746195704 |
| AC | 2.90280471307288e-37 | 0.694089534548725 | 1.06446314970186e-21 | 0.556148049735044 | 9.23046314290047e-29 | 0.627384660133501 |
| PCC | 4.62389253543644e-08 | 0.382794630631327 | 4.18344807539895e-06 | 0.325991019593853 | 1.07170568912317e-10 | 0.445411304270399 |
| CER | 8.04665497827976e-12 | 0.521182947410201 | 4.99040553489586e-23 | 0.695799160368687 | 0.000111250259656324 | 0.310316968042217 |
| TCX | 0.00332871486731265 | 0.23822528862283 | 0.0436821476001142 | -0.164947765490501 | 8.48376031283174e-26 | 0.725582004699688 |
| FP | 2.58681274987703e-05 | 0.309727287871109 | 0.00339912593919675 | 0.218429062288753 | 1.32658719739953e-26 | 0.691065932750748 |
| IFG | 0.0066116460538744 | 0.528482353619262 | 0.0118962765735562 | 0.49490957068214 | 0.000284411836376482 | 0.665325253150327 |
| PG | 0.675187564110151 | -0.0309265705558736 | 0.225652397905423 | -0.0892656323720514 | 2.26962245166417e-17 | 0.569328549787497 |
| STG | 0.00247059953015863 | 0.326073014456985 | 0.456760455112138 | 0.0822931841765169 | 1.32027417450401e-08 | 0.571978558347285 |
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Relation with AD stages for SLC12A9 |
| Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
| CER | ADediting_1286161 | chr7_100854909_+ | 0.0003678036252721 | 0.336626593321871 |
| CER | ADediting_1286203 | chr7_100856261_+ | 0.00109232735430987 | 0.3100585498477 |
| CER | ADediting_1286204 | chr7_100856288_+ | 0.001302530889527 | 0.305525954015751 |
| CER | ADediting_1286205 | chr7_100856307_+ | 0.00058917351001335 | 0.32542018686816 |
| CER | ADediting_1286206 | chr7_100856308_+ | 0.000121367943597763 | 0.36144775682189 |
| CER | ADediting_1286209 | chr7_100856337_+ | 0.000209889086249339 | 0.34944086297465 |
| CER | ADediting_1286217 | chr7_100856460_+ | 0.00121002171992222 | 0.307431925149075 |
| CER | ADediting_1286218 | chr7_100856539_+ | 0.000909684164596408 | 0.314696486727616 |
| CER | ADediting_1286221 | chr7_100856558_+ | 0.000546347272344629 | 0.327243911263586 |
| CER | ADediting_1286222 | chr7_100856576_+ | 0.000118295979631852 | 0.361998239420492 |
| CER | ADediting_1286226 | chr7_100856595_+ | 0.000258039136431138 | 0.344786575204012 |
| CER | ADediting_1286229 | chr7_100856643_+ | 1.94382007921843e-05 | 0.398481515388204 |
| CER | ADediting_1286230 | chr7_100856652_+ | 0.00012599823622608 | 0.360642018276237 |
| CER | ADediting_1286232 | chr7_100856658_+ | 1.0848464534082e-05 | 0.409400497183688 |
| CER | ADediting_1286241 | chr7_100856732_+ | 0.00119423154454132 | 0.307770435174233 |
| CER | ADediting_1286247 | chr7_100856751_+ | 5.78712253915767e-05 | 0.376963303343891 |
| CER | ADediting_1286256 | chr7_100857686_+ | 0.00143631055576794 | 0.302976865848694 |
| CER | ADediting_1286267 | chr7_100857960_+ | 0.000498397708472904 | 0.329448611976739 |
| CER | ADediting_1585126 | chr7_100857667_+ | 0.000789349811262952 | 0.318242812597394 |
| TCX | ADediting_1286192 | chr7_100855356_+ | 0.00158608490428646 | 0.303118960522306 |
| Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
| CER | 7.93048797619792e-08 | 0.488914468691771 |
| TCX | 6.76071858272014e-06 | 0.421621744059285 |
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RelatedDrugs for SLC12A9 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for SLC12A9 |
| Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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