ADeditome: functional annotation of RNA A-to-I editing in AD

Gene summary for CHPT1

Gene summary

Gene information	Gene symbol	CHPT1
	Gene ID	56994
	Gene name	choline phosphotransferase 1
	Synonyms	CPT\|CPT1
	Cytomap	12q23.2
	Type of gene	protein-coding
	Description	cholinephosphotransferase 1AAPT1-like proteincholinephosphotransferase 1 alphadiacylglycerol cholinephosphotransferase 1hCPT1phosphatidylcholine synthesizing enzyme
	Modification date	20200313
	UniProtAcc	Q8WUD6,
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
CHPT1	GO:0006656	phosphatidylcholine biosynthetic process	10893425
CHPT1	GO:0006663	platelet activating factor biosynthetic process	10893425

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RNA A-to-I events for CHPT1

RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).

RNA editing frequencies across three data sets.

The number of RNA A-to-I editing events in different types of transcripts (# event, percentage).

RNA A-to-I editing events in AD.

ADediting_294198(101702855, +), ADediting_294199(101705164, +), ADediting_294200(101705189, +), ADediting_294201(101705190, +), ADediting_294202(101705193, +), ADediting_294203(101705203, +), ADediting_294204(101705851, +), ADediting_294205(101705852, +), ADediting_294206(101705865, +), ADediting_294207(101706119, +), ADediting_294208(101706163, +), ADediting_294209(101706164, +), ADediting_294210(101706229, +), ADediting_294211(101706230, +), ADediting_294212(101706239, +), ADediting_294213(101706243, +), ADediting_294214(101708639, +), ADediting_294215(101708697, +), ADediting_294216(101708701, +), ADediting_294217(101708714, +), ADediting_294218(101708726, +), ADediting_294219(101708736, +), ADediting_294220(101708744, +), ADediting_294221(101708754, +), ADediting_294222(101708762, +), ADediting_294223(101708797, +), ADediting_294224(101708806, +), ADediting_294225(101708859, +), ADediting_294226(101709118, +), ADediting_294227(101709138, +), ADediting_294228(101709140, +), ADediting_294229(101709167, +), ADediting_294230(101709181, +), ADediting_294231(101709186, +), ADediting_294232(101709189, +), ADediting_294233(101709214, +), ADediting_294234(101709218, +), ADediting_294235(101709237, +), ADediting_294236(101709238, +), ADediting_294237(101709245, +), ADediting_294238(101709247, +), ADediting_294239(101709250, +), ADediting_294240(101709251, +), ADediting_294241(101709276, +), ADediting_294242(101709288, +), ADediting_294243(101709292, +), ADediting_294244(101709301, +), ADediting_294245(101710081, +), ADediting_294246(101710090, +), ADediting_294247(101710095, +), ADediting_294248(101710116, +), ADediting_294249(101710130, +), ADediting_294250(101710138, +), ADediting_294251(101710192, +), ADediting_294252(101710199, +), ADediting_294253(101710225, +), ADediting_294254(101710226, +), ADediting_294255(101712161, +), ADediting_294256(101712164, +), ADediting_294257(101712182, +), ADediting_294258(101712194, +), ADediting_294259(101712255, +), ADediting_294260(101712268, +), ADediting_294261(101712289, +), ADediting_294262(101721073, +), ADediting_294263(101722003, +), ADediting_294264(101727120, +), ADediting_294265(101727972, +), ADediting_294266(101727994, +), ADediting_294267(101727995, +), ADediting_294268(101728040, +), ADediting_294269(101728129, +), ADediting_294270(101728156, +), ADediting_294271(101728170, +), ADediting_294272(101728178, +), ADediting_294273(101739705, +), ADediting_294274(101739721, +), ADediting_294275(101739728, +), ADediting_294276(101739754, +), ADediting_294277(101739773, +), ADediting_294278(101739797, +), ADediting_294279(101739862, +), ADediting_294280(101740781, +), ADediting_294281(101740782, +), ADediting_294282(101740920, +), ADediting_294283(101740954, +), ADediting_294284(101740972, +), ADediting_294285(101741232, +), ADediting_294286(101741233, +), ADediting_294287(101741234, +), ADediting_294288(101741251, +), ADediting_294289(101741253, +), ADediting_294290(101741257, +), ADediting_294291(101741258, +), ADediting_294292(101741265, +), ADediting_294293(101741266, +), ADediting_294294(101741267, +), ADediting_294295(101741277, +), ADediting_294296(101741283, +), ADediting_294297(101741290, +), ADediting_294298(101741291, +), ADediting_294299(101741292, +), ADediting_294300(101741293, +), ADediting_294301(101741294, +), ADediting_294302(101741295, +), ADediting_294303(101741302, +), ADediting_294304(101741303, +), ADediting_294305(101741304, +), ADediting_294306(101741310, +), ADediting_294307(101741313, +), ADediting_294308(101741318, +), ADediting_294309(101741327, +), ADediting_294310(101741329, +), ADediting_294311(101741330, +), ADediting_294312(101741332, +), ADediting_294313(101741333, +), ADediting_294314(101741334, +), ADediting_294315(101741343, +), ADediting_294316(101741344, +), ADediting_294317(101741345, +), ADediting_294318(101741357, +), ADediting_294319(101741360, +), ADediting_294320(101741366, +), ADediting_294321(101741367, +), ADediting_294322(101741377, +), ADediting_294323(101741383, +), ADediting_294324(101741405, +), ADediting_294325(101741430, +), ADediting_294326(101741433, +), ADediting_294327(101741437, +), ADediting_294328(101741439, +), ADediting_294329(101741453, +), ADediting_294330(101741454, +), ADediting_294331(101741471, +), ADediting_294332(101741481, +), ADediting_294333(101742008, +), ADediting_294334(101742135, +), ADediting_294335(101742136, +), ADediting_294336(101742139, +), ADediting_294337(101742141, +), ADediting_294338(101742150, +), ADediting_294339(101742151, +), ADediting_294340(101742156, +), ADediting_294341(101742164, +), ADediting_294342(101742166, +), ADediting_294343(101742167, +), ADediting_294344(101742168, +), ADediting_294345(101742169, +), ADediting_294346(101742174, +), ADediting_294347(101742176, +), ADediting_294348(101742179, +), ADediting_294349(101742189, +), ADediting_294350(101742190, +), ADediting_294351(101742191, +), ADediting_294352(101742196, +), ADediting_294353(101742207, +), ADediting_294354(101742210, +), ADediting_294355(101742213, +), ADediting_294356(101742218, +), ADediting_294357(101742219, +), ADediting_294358(101742221, +), ADediting_294359(101742222, +), ADediting_294360(101742225, +), ADediting_294361(101742233, +), ADediting_294362(101742234, +), ADediting_294363(101742236, +), ADediting_294364(101742238, +), ADediting_294365(101742242, +), ADediting_294366(101742243, +), ADediting_294367(101742247, +), ADediting_294368(101742256, +), ADediting_294369(101742266, +), ADediting_294370(101742272, +), ADediting_294371(101742276, +), ADediting_294372(101742278, +), ADediting_294373(101742279, +), ADediting_294374(101742280, +), ADediting_294375(101742281, +), ADediting_294376(101742292, +), ADediting_294377(101742303, +), ADediting_294378(101742306, +), ADediting_294379(101742313, +), ADediting_294380(101742317, +), ADediting_294381(101742325, +), ADediting_294382(101742326, +), ADediting_294383(101742333, +), ADediting_294384(101742343, +), ADediting_294385(101742356, +), ADediting_294386(101742363, +), ADediting_294387(101742364, +), ADediting_294388(101742368, +), ADediting_294389(101742371, +), ADediting_294390(101743727, +), ADediting_294391(101743729, +), ADediting_294392(101743735, +), ADediting_294393(101743736, +), ADediting_294394(101743752, +), ADediting_294395(101743759, +), ADediting_294396(101743762, +), ADediting_294397(101743790, +), ADediting_294398(101743809, +), ADediting_294399(101743840, +), ADediting_294400(101743843, +), ADediting_294401(101743847, +), ADediting_294402(101743873, +), ADediting_294403(101743883, +), ADediting_294404(101743887, +), ADediting_294405(101743897, +), ADediting_294406(101743910, +), ADediting_294407(101743931, +), ADediting_294408(101743945, +), ADediting_1529482(101728051, +), ADediting_1529483(101728074, +), ADediting_1529484(101741489, +), ADediting_1529485(101742357, +), ADediting_1611568(101742051, +), ADediting_1611569(101742265, +),

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RNA editing positional annotations for CHPT1 using Annovar

Protein coding RNA editing(s).

ADeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

ADeditome ID	Position	Variant type
ADediting_294198	chr12_101702855_+	intronic
ADediting_294199	chr12_101705164_+	intronic
ADediting_294200	chr12_101705189_+	intronic
ADediting_294201	chr12_101705190_+	intronic
ADediting_294202	chr12_101705193_+	intronic
ADediting_294203	chr12_101705203_+	intronic
ADediting_294204	chr12_101705851_+	intronic
ADediting_294205	chr12_101705852_+	intronic
ADediting_294206	chr12_101705865_+	intronic
ADediting_294207	chr12_101706119_+	intronic
ADediting_294208	chr12_101706163_+	intronic
ADediting_294209	chr12_101706164_+	intronic
ADediting_294210	chr12_101706229_+	intronic
ADediting_294211	chr12_101706230_+	intronic
ADediting_294212	chr12_101706239_+	intronic
ADediting_294213	chr12_101706243_+	intronic
ADediting_294214	chr12_101708639_+	intronic
ADediting_294215	chr12_101708697_+	intronic
ADediting_294216	chr12_101708701_+	intronic
ADediting_294217	chr12_101708714_+	intronic
ADediting_294218	chr12_101708726_+	intronic
ADediting_294219	chr12_101708736_+	intronic
ADediting_294220	chr12_101708744_+	intronic
ADediting_294221	chr12_101708754_+	intronic
ADediting_294222	chr12_101708762_+	intronic
ADediting_294223	chr12_101708797_+	intronic
ADediting_294224	chr12_101708806_+	intronic
ADediting_294225	chr12_101708859_+	intronic
ADediting_294226	chr12_101709118_+	intronic
ADediting_294227	chr12_101709138_+	intronic
ADediting_294228	chr12_101709140_+	intronic
ADediting_294229	chr12_101709167_+	intronic
ADediting_294230	chr12_101709181_+	intronic
ADediting_294231	chr12_101709186_+	intronic
ADediting_294232	chr12_101709189_+	intronic
ADediting_294233	chr12_101709214_+	intronic
ADediting_294234	chr12_101709218_+	intronic
ADediting_294235	chr12_101709237_+	intronic
ADediting_294236	chr12_101709238_+	intronic
ADediting_294237	chr12_101709245_+	intronic
ADediting_294238	chr12_101709247_+	intronic
ADediting_294239	chr12_101709250_+	intronic
ADediting_294240	chr12_101709251_+	intronic
ADediting_294241	chr12_101709276_+	intronic
ADediting_294242	chr12_101709288_+	intronic
ADediting_294243	chr12_101709292_+	intronic
ADediting_294244	chr12_101709301_+	intronic
ADediting_294245	chr12_101710081_+	intronic
ADediting_294246	chr12_101710090_+	intronic
ADediting_294247	chr12_101710095_+	intronic
ADediting_294248	chr12_101710116_+	intronic
ADediting_294249	chr12_101710130_+	intronic
ADediting_294250	chr12_101710138_+	intronic
ADediting_294251	chr12_101710192_+	intronic
ADediting_294252	chr12_101710199_+	intronic
ADediting_294253	chr12_101710225_+	intronic
ADediting_294254	chr12_101710226_+	intronic
ADediting_294255	chr12_101712161_+	intronic
ADediting_294256	chr12_101712164_+	intronic
ADediting_294257	chr12_101712182_+	intronic
ADediting_294258	chr12_101712194_+	intronic
ADediting_294259	chr12_101712255_+	intronic
ADediting_294260	chr12_101712268_+	intronic
ADediting_294261	chr12_101712289_+	intronic
ADediting_294262	chr12_101721073_+	intronic
ADediting_294263	chr12_101722003_+	intronic
ADediting_294264	chr12_101727120_+	UTR3
ADediting_294265	chr12_101727972_+	UTR3
ADediting_294266	chr12_101727994_+	UTR3
ADediting_294267	chr12_101727995_+	UTR3
ADediting_294268	chr12_101728040_+	UTR3
ADediting_294269	chr12_101728129_+	UTR3
ADediting_294270	chr12_101728156_+	UTR3
ADediting_294271	chr12_101728170_+	UTR3
ADediting_294272	chr12_101728178_+	UTR3
ADediting_294273	chr12_101739705_+	intronic
ADediting_294274	chr12_101739721_+	intronic
ADediting_294275	chr12_101739728_+	intronic
ADediting_294276	chr12_101739754_+	intronic
ADediting_294277	chr12_101739773_+	intronic
ADediting_294278	chr12_101739797_+	intronic
ADediting_294279	chr12_101739862_+	intronic
ADediting_294280	chr12_101740781_+	intronic
ADediting_294281	chr12_101740782_+	intronic
ADediting_294282	chr12_101740920_+	intronic
ADediting_294283	chr12_101740954_+	intronic
ADediting_294284	chr12_101740972_+	intronic
ADediting_294285	chr12_101741232_+	intronic
ADediting_294286	chr12_101741233_+	intronic
ADediting_294287	chr12_101741234_+	intronic
ADediting_294288	chr12_101741251_+	intronic
ADediting_294289	chr12_101741253_+	intronic
ADediting_294290	chr12_101741257_+	intronic
ADediting_294291	chr12_101741258_+	intronic
ADediting_294292	chr12_101741265_+	intronic
ADediting_294293	chr12_101741266_+	intronic
ADediting_294294	chr12_101741267_+	intronic
ADediting_294295	chr12_101741277_+	intronic
ADediting_294296	chr12_101741283_+	intronic
ADediting_294297	chr12_101741290_+	intronic
ADediting_294298	chr12_101741291_+	intronic
ADediting_294299	chr12_101741292_+	intronic
ADediting_294300	chr12_101741293_+	intronic
ADediting_294301	chr12_101741294_+	intronic
ADediting_294302	chr12_101741295_+	intronic
ADediting_294303	chr12_101741302_+	intronic
ADediting_294304	chr12_101741303_+	intronic
ADediting_294305	chr12_101741304_+	intronic
ADediting_294306	chr12_101741310_+	intronic
ADediting_294307	chr12_101741313_+	intronic
ADediting_294308	chr12_101741318_+	intronic
ADediting_294309	chr12_101741327_+	intronic
ADediting_294310	chr12_101741329_+	intronic
ADediting_294311	chr12_101741330_+	intronic
ADediting_294312	chr12_101741332_+	intronic
ADediting_294313	chr12_101741333_+	intronic
ADediting_294314	chr12_101741334_+	intronic
ADediting_294315	chr12_101741343_+	intronic
ADediting_294316	chr12_101741344_+	intronic
ADediting_294317	chr12_101741345_+	intronic
ADediting_294318	chr12_101741357_+	intronic
ADediting_294319	chr12_101741360_+	intronic
ADediting_294320	chr12_101741366_+	intronic
ADediting_294321	chr12_101741367_+	intronic
ADediting_294322	chr12_101741377_+	intronic
ADediting_294323	chr12_101741383_+	intronic
ADediting_294324	chr12_101741405_+	intronic
ADediting_294325	chr12_101741430_+	intronic
ADediting_294326	chr12_101741433_+	intronic
ADediting_294327	chr12_101741437_+	intronic
ADediting_294328	chr12_101741439_+	intronic
ADediting_294329	chr12_101741453_+	intronic
ADediting_294330	chr12_101741454_+	intronic
ADediting_294331	chr12_101741471_+	intronic
ADediting_294332	chr12_101741481_+	intronic
ADediting_294333	chr12_101742008_+	intronic
ADediting_294334	chr12_101742135_+	intronic
ADediting_294335	chr12_101742136_+	intronic
ADediting_294336	chr12_101742139_+	intronic
ADediting_294337	chr12_101742141_+	intronic
ADediting_294338	chr12_101742150_+	intronic
ADediting_294339	chr12_101742151_+	intronic
ADediting_294340	chr12_101742156_+	intronic
ADediting_294341	chr12_101742164_+	intronic
ADediting_294342	chr12_101742166_+	intronic
ADediting_294343	chr12_101742167_+	intronic
ADediting_294344	chr12_101742168_+	intronic
ADediting_294345	chr12_101742169_+	intronic
ADediting_294346	chr12_101742174_+	intronic
ADediting_294347	chr12_101742176_+	intronic
ADediting_294348	chr12_101742179_+	intronic
ADediting_294349	chr12_101742189_+	intronic
ADediting_294350	chr12_101742190_+	intronic
ADediting_294351	chr12_101742191_+	intronic
ADediting_294352	chr12_101742196_+	intronic
ADediting_294353	chr12_101742207_+	intronic
ADediting_294354	chr12_101742210_+	intronic
ADediting_294355	chr12_101742213_+	intronic
ADediting_294356	chr12_101742218_+	intronic
ADediting_294357	chr12_101742219_+	intronic
ADediting_294358	chr12_101742221_+	intronic
ADediting_294359	chr12_101742222_+	intronic
ADediting_294360	chr12_101742225_+	intronic
ADediting_294361	chr12_101742233_+	intronic
ADediting_294362	chr12_101742234_+	intronic
ADediting_294363	chr12_101742236_+	intronic
ADediting_294364	chr12_101742238_+	intronic
ADediting_294365	chr12_101742242_+	intronic
ADediting_294366	chr12_101742243_+	intronic
ADediting_294367	chr12_101742247_+	intronic
ADediting_294368	chr12_101742256_+	intronic
ADediting_294369	chr12_101742266_+	intronic
ADediting_294370	chr12_101742272_+	intronic
ADediting_294371	chr12_101742276_+	intronic
ADediting_294372	chr12_101742278_+	intronic
ADediting_294373	chr12_101742279_+	intronic
ADediting_294374	chr12_101742280_+	intronic
ADediting_294375	chr12_101742281_+	intronic
ADediting_294376	chr12_101742292_+	intronic
ADediting_294377	chr12_101742303_+	intronic
ADediting_294378	chr12_101742306_+	intronic
ADediting_294379	chr12_101742313_+	intronic
ADediting_294380	chr12_101742317_+	intronic
ADediting_294381	chr12_101742325_+	intronic
ADediting_294382	chr12_101742326_+	intronic
ADediting_294383	chr12_101742333_+	intronic
ADediting_294384	chr12_101742343_+	intronic
ADediting_294385	chr12_101742356_+	intronic
ADediting_294386	chr12_101742363_+	intronic
ADediting_294387	chr12_101742364_+	intronic
ADediting_294388	chr12_101742368_+	intronic
ADediting_294389	chr12_101742371_+	intronic
ADediting_294390	chr12_101743727_+	UTR3
ADediting_294391	chr12_101743729_+	UTR3
ADediting_294392	chr12_101743735_+	UTR3
ADediting_294393	chr12_101743736_+	UTR3
ADediting_294394	chr12_101743752_+	UTR3
ADediting_294395	chr12_101743759_+	UTR3
ADediting_294396	chr12_101743762_+	UTR3
ADediting_294397	chr12_101743790_+	UTR3
ADediting_294398	chr12_101743809_+	UTR3
ADediting_294399	chr12_101743840_+	UTR3
ADediting_294400	chr12_101743843_+	UTR3
ADediting_294401	chr12_101743847_+	UTR3
ADediting_294402	chr12_101743873_+	UTR3
ADediting_294403	chr12_101743883_+	UTR3
ADediting_294404	chr12_101743887_+	UTR3
ADediting_294405	chr12_101743897_+	UTR3
ADediting_294406	chr12_101743910_+	UTR3
ADediting_294407	chr12_101743931_+	UTR3
ADediting_294408	chr12_101743945_+	UTR3
ADediting_1529482	chr12_101728051_+	UTR3
ADediting_1529483	chr12_101728074_+	UTR3
ADediting_1529484	chr12_101741489_+	intronic
ADediting_1529485	chr12_101742357_+	intronic
ADediting_1611568	chr12_101742051_+	intronic
ADediting_1611569	chr12_101742265_+	intronic

Repat-regional RNA editing(s).

ADeditome ID	Position	Repeat family	Repeat sub family	Repeat name
ADediting_294199	chr12_101705164_+	SINE	Alu	Name=AluSx
ADediting_294200	chr12_101705189_+	SINE	Alu	Name=AluSx
ADediting_294201	chr12_101705190_+	SINE	Alu	Name=AluSx
ADediting_294202	chr12_101705193_+	SINE	Alu	Name=AluSx
ADediting_294203	chr12_101705203_+	SINE	Alu	Name=AluSx
ADediting_294204	chr12_101705851_+	SINE	Alu	Name=AluSz
ADediting_294205	chr12_101705852_+	SINE	Alu	Name=AluSz
ADediting_294206	chr12_101705865_+	SINE	Alu	Name=AluSz
ADediting_294207	chr12_101706119_+	SINE	Alu	Name=AluSg
ADediting_294208	chr12_101706163_+	SINE	Alu	Name=AluSg
ADediting_294209	chr12_101706164_+	SINE	Alu	Name=AluSg
ADediting_294210	chr12_101706229_+	SINE	Alu	Name=AluSg
ADediting_294211	chr12_101706230_+	SINE	Alu	Name=AluSg
ADediting_294212	chr12_101706239_+	SINE	Alu	Name=AluSg
ADediting_294213	chr12_101706243_+	SINE	Alu	Name=AluSg
ADediting_294214	chr12_101708639_+	SINE	Alu	Name=AluSz6
ADediting_294215	chr12_101708697_+	SINE	Alu	Name=AluSz6
ADediting_294216	chr12_101708701_+	SINE	Alu	Name=AluSz6
ADediting_294217	chr12_101708714_+	SINE	Alu	Name=AluSz6
ADediting_294218	chr12_101708726_+	SINE	Alu	Name=AluSz6
ADediting_294219	chr12_101708736_+	SINE	Alu	Name=AluSz6
ADediting_294220	chr12_101708744_+	SINE	Alu	Name=AluSz6
ADediting_294221	chr12_101708754_+	SINE	Alu	Name=AluSz6
ADediting_294222	chr12_101708762_+	SINE	Alu	Name=AluSz6
ADediting_294223	chr12_101708797_+	SINE	Alu	Name=AluSz6
ADediting_294224	chr12_101708806_+	SINE	Alu	Name=AluSz6
ADediting_294225	chr12_101708859_+	SINE	Alu	Name=AluSz6
ADediting_294226	chr12_101709118_+	SINE	Alu	Name=AluJr4
ADediting_294227	chr12_101709138_+	SINE	Alu	Name=AluJr4
ADediting_294228	chr12_101709140_+	SINE	Alu	Name=AluJr4
ADediting_294229	chr12_101709167_+	SINE	Alu	Name=AluJr4
ADediting_294230	chr12_101709181_+	SINE	Alu	Name=AluJr4
ADediting_294231	chr12_101709186_+	SINE	Alu	Name=AluJr4
ADediting_294232	chr12_101709189_+	SINE	Alu	Name=AluJr4
ADediting_294233	chr12_101709214_+	SINE	Alu	Name=AluJr4
ADediting_294234	chr12_101709218_+	SINE	Alu	Name=AluJr4
ADediting_294235	chr12_101709237_+	SINE	Alu	Name=AluJr4
ADediting_294236	chr12_101709238_+	SINE	Alu	Name=AluJr4
ADediting_294237	chr12_101709245_+	SINE	Alu	Name=AluJr4
ADediting_294238	chr12_101709247_+	SINE	Alu	Name=AluJr4
ADediting_294239	chr12_101709250_+	SINE	Alu	Name=AluJr4
ADediting_294240	chr12_101709251_+	SINE	Alu	Name=AluJr4
ADediting_294241	chr12_101709276_+	SINE	Alu	Name=AluJr4
ADediting_294242	chr12_101709288_+	SINE	Alu	Name=AluJr4
ADediting_294243	chr12_101709292_+	SINE	Alu	Name=AluJr4
ADediting_294244	chr12_101709301_+	SINE	Alu	Name=AluJr4
ADediting_294245	chr12_101710081_+	SINE	Alu	Name=AluSz6
ADediting_294246	chr12_101710090_+	SINE	Alu	Name=AluSz6
ADediting_294247	chr12_101710095_+	SINE	Alu	Name=AluSz6
ADediting_294248	chr12_101710116_+	SINE	Alu	Name=AluSz6
ADediting_294249	chr12_101710130_+	SINE	Alu	Name=AluSz6
ADediting_294250	chr12_101710138_+	SINE	Alu	Name=AluSz6
ADediting_294251	chr12_101710192_+	SINE	Alu	Name=AluSz6
ADediting_294252	chr12_101710199_+	SINE	Alu	Name=AluSz6
ADediting_294253	chr12_101710225_+	SINE	Alu	Name=AluSz6
ADediting_294254	chr12_101710226_+	SINE	Alu	Name=AluSz6
ADediting_294255	chr12_101712161_+	SINE	Alu	Name=AluJb
ADediting_294256	chr12_101712164_+	SINE	Alu	Name=AluJb
ADediting_294257	chr12_101712182_+	SINE	Alu	Name=AluJb
ADediting_294258	chr12_101712194_+	SINE	Alu	Name=AluJb
ADediting_294259	chr12_101712255_+	SINE	Alu	Name=AluJb
ADediting_294260	chr12_101712268_+	SINE	Alu	Name=AluJb
ADediting_294261	chr12_101712289_+	SINE	Alu	Name=AluJb
ADediting_294262	chr12_101721073_+	SINE	Alu	Name=AluSz
ADediting_294263	chr12_101722003_+	SINE	Alu	Name=AluSx1
ADediting_294265	chr12_101727972_+	SINE	Alu	Name=AluSz
ADediting_294266	chr12_101727994_+	SINE	Alu	Name=AluSz
ADediting_294267	chr12_101727995_+	SINE	Alu	Name=AluSz
ADediting_294268	chr12_101728040_+	SINE	Alu	Name=AluSz
ADediting_294269	chr12_101728129_+	SINE	Alu	Name=AluSz
ADediting_294270	chr12_101728156_+	SINE	Alu	Name=AluSz
ADediting_294271	chr12_101728170_+	SINE	Alu	Name=AluSz
ADediting_294272	chr12_101728178_+	SINE	Alu	Name=AluSz
ADediting_294273	chr12_101739705_+	SINE	Alu	Name=AluSx1
ADediting_294274	chr12_101739721_+	SINE	Alu	Name=AluSx1
ADediting_294275	chr12_101739728_+	SINE	Alu	Name=AluSx1
ADediting_294276	chr12_101739754_+	SINE	Alu	Name=AluSx1
ADediting_294277	chr12_101739773_+	SINE	Alu	Name=AluSx1
ADediting_294278	chr12_101739797_+	SINE	Alu	Name=AluSx1
ADediting_294279	chr12_101739862_+	SINE	Alu	Name=AluSx1
ADediting_294280	chr12_101740781_+	SINE	Alu	Name=AluJb
ADediting_294281	chr12_101740782_+	SINE	Alu	Name=AluJb
ADediting_294282	chr12_101740920_+	SINE	Alu	Name=AluJb
ADediting_294283	chr12_101740954_+	SINE	Alu	Name=AluJb
ADediting_294284	chr12_101740972_+	SINE	Alu	Name=AluJb
ADediting_294295	chr12_101741277_+	SINE	MIR	Name=MIRb
ADediting_294296	chr12_101741283_+	SINE	MIR	Name=MIRb
ADediting_294297	chr12_101741290_+	SINE	MIR	Name=MIRb
ADediting_294298	chr12_101741291_+	SINE	MIR	Name=MIRb
ADediting_294299	chr12_101741292_+	SINE	MIR	Name=MIRb
ADediting_294300	chr12_101741293_+	SINE	MIR	Name=MIRb
ADediting_294301	chr12_101741294_+	SINE	MIR	Name=MIRb
ADediting_294302	chr12_101741295_+	SINE	MIR	Name=MIRb
ADediting_294303	chr12_101741302_+	SINE	MIR	Name=MIRb
ADediting_294304	chr12_101741303_+	SINE	MIR	Name=MIRb
ADediting_294305	chr12_101741304_+	SINE	MIR	Name=MIRb
ADediting_294306	chr12_101741310_+	SINE	MIR	Name=MIRb
ADediting_294307	chr12_101741313_+	SINE	MIR	Name=MIRb
ADediting_294308	chr12_101741318_+	SINE	MIR	Name=MIRb
ADediting_294309	chr12_101741327_+	SINE	MIR	Name=MIRb
ADediting_294310	chr12_101741329_+	SINE	MIR	Name=MIRb
ADediting_294311	chr12_101741330_+	SINE	MIR	Name=MIRb
ADediting_294312	chr12_101741332_+	SINE	MIR	Name=MIRb
ADediting_294313	chr12_101741333_+	SINE	MIR	Name=MIRb
ADediting_294314	chr12_101741334_+	SINE	MIR	Name=MIRb
ADediting_294315	chr12_101741343_+	SINE	MIR	Name=MIRb
ADediting_294316	chr12_101741344_+	SINE	MIR	Name=MIRb
ADediting_294317	chr12_101741345_+	SINE	MIR	Name=MIRb
ADediting_294318	chr12_101741357_+	SINE	MIR	Name=MIRb
ADediting_294324	chr12_101741405_+	LINE	L2	Name=L2b
ADediting_294325	chr12_101741430_+	LINE	L2	Name=L2b
ADediting_294326	chr12_101741433_+	LINE	L2	Name=L2b
ADediting_294327	chr12_101741437_+	LINE	L2	Name=L2b
ADediting_294328	chr12_101741439_+	LINE	L2	Name=L2b
ADediting_294329	chr12_101741453_+	LINE	L2	Name=L2b
ADediting_294330	chr12_101741454_+	LINE	L2	Name=L2b
ADediting_294331	chr12_101741471_+	LINE	L2	Name=L2b
ADediting_294332	chr12_101741481_+	LINE	L2	Name=L2b
ADediting_294333	chr12_101742008_+	SINE	Alu	Name=AluJo
ADediting_294334	chr12_101742135_+	LINE	L2	Name=L2c
ADediting_294335	chr12_101742136_+	LINE	L2	Name=L2c
ADediting_294336	chr12_101742139_+	LINE	L2	Name=L2c
ADediting_294337	chr12_101742141_+	LINE	L2	Name=L2c
ADediting_294338	chr12_101742150_+	LINE	L2	Name=L2c
ADediting_294339	chr12_101742151_+	LINE	L2	Name=L2c
ADediting_294340	chr12_101742156_+	LINE	L2	Name=L2c
ADediting_294341	chr12_101742164_+	LINE	L2	Name=L2c
ADediting_294342	chr12_101742166_+	LINE	L2	Name=L2c
ADediting_294343	chr12_101742167_+	LINE	L2	Name=L2c
ADediting_294344	chr12_101742168_+	LINE	L2	Name=L2c
ADediting_294345	chr12_101742169_+	LINE	L2	Name=L2c
ADediting_294346	chr12_101742174_+	LINE	L2	Name=L2c
ADediting_294347	chr12_101742176_+	LINE	L2	Name=L2c
ADediting_294348	chr12_101742179_+	LINE	L2	Name=L2c
ADediting_294349	chr12_101742189_+	LINE	L2	Name=L2c
ADediting_294350	chr12_101742190_+	LINE	L2	Name=L2c
ADediting_294351	chr12_101742191_+	LINE	L2	Name=L2c
ADediting_294352	chr12_101742196_+	LINE	L2	Name=L2c
ADediting_294353	chr12_101742207_+	LINE	L2	Name=L2c
ADediting_294354	chr12_101742210_+	LINE	L2	Name=L2c
ADediting_294355	chr12_101742213_+	LINE	L2	Name=L2c
ADediting_294356	chr12_101742218_+	LINE	L2	Name=L2c,OldhAT1
ADediting_294357	chr12_101742219_+	LINE	L2	Name=L2c,OldhAT1
ADediting_294358	chr12_101742221_+	DNA	hAT-Ac	Name=OldhAT1,L2c
ADediting_294359	chr12_101742222_+	DNA	hAT-Ac	Name=OldhAT1,L2c
ADediting_294360	chr12_101742225_+	DNA	hAT-Ac	Name=OldhAT1,L2c
ADediting_294361	chr12_101742233_+	LINE	L2	Name=L2c,OldhAT1
ADediting_294362	chr12_101742234_+	LINE	L2	Name=L2c,OldhAT1
ADediting_294363	chr12_101742236_+	LINE	L2	Name=L2c,OldhAT1
ADediting_294364	chr12_101742238_+	LINE	L2	Name=L2c,OldhAT1
ADediting_294365	chr12_101742242_+	DNA	hAT-Ac	Name=OldhAT1,L2c
ADediting_294366	chr12_101742243_+	LINE	L2	Name=L2c,OldhAT1
ADediting_294367	chr12_101742247_+	LINE	L2	Name=L2c,OldhAT1
ADediting_294368	chr12_101742256_+	LINE	L2	Name=L2c,OldhAT1
ADediting_294369	chr12_101742266_+	DNA	hAT-Ac	Name=OldhAT1,L2c
ADediting_294370	chr12_101742272_+	LINE	L2	Name=L2c,OldhAT1
ADediting_294371	chr12_101742276_+	DNA	hAT-Ac	Name=OldhAT1,MIRb
ADediting_294372	chr12_101742278_+	DNA	hAT-Ac	Name=OldhAT1,MIRb
ADediting_294373	chr12_101742279_+	SINE	MIR	Name=MIRb,OldhAT1
ADediting_294374	chr12_101742280_+	SINE	MIR	Name=MIRb,OldhAT1
ADediting_294375	chr12_101742281_+	DNA	hAT-Ac	Name=OldhAT1,MIRb
ADediting_294376	chr12_101742292_+	SINE	MIR	Name=MIRb
ADediting_294377	chr12_101742303_+	SINE	MIR	Name=MIRb
ADediting_294378	chr12_101742306_+	SINE	MIR	Name=MIRb
ADediting_294379	chr12_101742313_+	SINE	MIR	Name=MIRb
ADediting_294380	chr12_101742317_+	SINE	MIR	Name=MIRb
ADediting_294381	chr12_101742325_+	SINE	MIR	Name=MIRb
ADediting_294382	chr12_101742326_+	SINE	MIR	Name=MIRb
ADediting_294383	chr12_101742333_+	SINE	MIR	Name=MIRb
ADediting_294384	chr12_101742343_+	SINE	MIR	Name=MIRb
ADediting_294390	chr12_101743727_+	SINE	Alu	Name=AluJb
ADediting_294391	chr12_101743729_+	SINE	Alu	Name=AluJb
ADediting_294392	chr12_101743735_+	SINE	Alu	Name=AluJb
ADediting_294393	chr12_101743736_+	SINE	Alu	Name=AluJb
ADediting_294394	chr12_101743752_+	SINE	Alu	Name=AluJb
ADediting_294395	chr12_101743759_+	SINE	Alu	Name=AluJb
ADediting_294396	chr12_101743762_+	SINE	Alu	Name=AluJb
ADediting_294397	chr12_101743790_+	SINE	Alu	Name=AluJb
ADediting_294398	chr12_101743809_+	SINE	Alu	Name=AluJb
ADediting_294399	chr12_101743840_+	SINE	Alu	Name=AluJb
ADediting_294400	chr12_101743843_+	SINE	Alu	Name=AluJb
ADediting_294401	chr12_101743847_+	SINE	Alu	Name=AluJb
ADediting_294402	chr12_101743873_+	SINE	Alu	Name=AluJb
ADediting_294403	chr12_101743883_+	SINE	Alu	Name=AluJb
ADediting_294404	chr12_101743887_+	SINE	Alu	Name=AluJb
ADediting_294405	chr12_101743897_+	SINE	Alu	Name=AluJb
ADediting_294406	chr12_101743910_+	SINE	Alu	Name=AluJb
ADediting_294407	chr12_101743931_+	SINE	Alu	Name=AluJb
ADediting_294408	chr12_101743945_+	SINE	Alu	Name=AluJb
ADediting_1529482	chr12_101728051_+	SINE	Alu	Name=AluSz
ADediting_1529483	chr12_101728074_+	SINE	Alu	Name=AluSz
ADediting_1529484	chr12_101741489_+	LINE	L2	Name=L2b
ADediting_1611568	chr12_101742051_+	SINE	Alu	Name=AluJo
ADediting_1611569	chr12_101742265_+	LINE	L2	Name=L2c,OldhAT1

Top

RNA A-to-I editing events in the alternative splicing sites for CHPT1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

ADeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for CHPT1

Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

- Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

ADeditome ID

Chr

Positoing

Skipped exon

ENSG

ENSTs

Top

Protein coding region RNA A-to-I editings for CHPT1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

Top

The effects of the RNA editing to the miRNA binding sites for CHPT1

RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

ADeditom_ID	Position	ENSG	ENST	Transcript name	miRNA ID	Chromosome	Targt	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
ADediting_294392	chr12_101743735_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-513a-5p	chr12	101743730	101743736	7mer-m8	101743720	101743737	144	-17.77
ADediting_294392	chr12_101743735_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-638	chr12	101743735	101743741	7mer-1a	101743717	101743741	149	-29.88
ADediting_294395	chr12_101743759_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-6747-3p	chr12	101743758	101743765	8mer-1a	101743744	101743765	151	-23
ADediting_294396	chr12_101743762_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-10392-5p	chr12	101743756	101743762	7mer-m8	101743741	101743763	157	-23.07
ADediting_294397	chr12_101743790_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-12113	chr12	101743784	101743790	7mer-m8	101743773	101743791	152	-21.73
ADediting_294397	chr12_101743790_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-4539	chr12	101743784	101743790	7mer-m8	101743766	101743791	155	-22.08
ADediting_294398	chr12_101743809_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-1208	chr12	101743803	101743810	8mer-1a	101743792	101743810	155	-21.5
ADediting_294398	chr12_101743809_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-1304-3p	chr12	101743805	101743812	8mer-1a	101743791	101743812	148	-18.35
ADediting_294399	chr12_101743840_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-4637	chr12	101743839	101743845	7mer-m8	101743825	101743846	140	-6.81
ADediting_294404	chr12_101743887_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-660-3p	chr12	101743882	101743888	7mer-m8	101743868	101743889	150	-22.14
ADediting_294404	chr12_101743887_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-6791-3p	chr12	101743883	101743889	7mer-m8	101743868	101743890	146	-18.56
ADediting_294404	chr12_101743887_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-6829-3p	chr12	101743883	101743889	7mer-m8	101743871	101743890	151	-18.13
ADediting_294405	chr12_101743897_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-1224-3p	chr12	101743892	101743899	8mer-1a	101743880	101743899	160	-24.38
ADediting_294405	chr12_101743897_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-1260a	chr12	101743893	101743899	7mer-m8	101743883	101743900	157	-24.87
ADediting_294405	chr12_101743897_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-1260b	chr12	101743893	101743899	7mer-m8	101743882	101743900	153	-19.58
ADediting_294405	chr12_101743897_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-532-3p	chr12	101743894	101743900	7mer-m8	101743883	101743901	150	-24.75
ADediting_294405	chr12_101743897_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-6749-3p	chr12	101743896	101743902	7mer-m8	101743884	101743903	145	-19.63
ADediting_294406	chr12_101743910_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-3136-3p	chr12	101743907	101743913	7mer-m8	101743893	101743914	152	-17.5
ADediting_294406	chr12_101743910_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-7155-3p	chr12	101743907	101743913	7mer-m8	101743893	101743914	148	-25.98
ADediting_294408	chr12_101743945_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-4634	chr12	101743943	101743950	8mer-1a	101743930	101743950	143	-20.4

RNA A-to-I editing in lncRNA lost miRNA binding sites.

ADeditom_ID	Position	ENSG	ENST	Transcript name	miRNA ID	Chromosome	Targt	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
ADediting_294274	chr12_101739721_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-552-3p	chr12	101739720	101739727	8mer-1a	101739707	101739727	140	-14.09
ADediting_294275	chr12_101739728_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-10399-5p	chr12	101739723	101739729	7mer-m8	101739709	101739730	148	-10
ADediting_294275	chr12_101739728_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-5089-5p	chr12	101739727	101739733	7mer-m8	101739712	101739734	148	-13.62
ADediting_294275	chr12_101739728_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-6504-3p	chr12	101739723	101739729	7mer-m8	101739709	101739730	149	-15.11
ADediting_294276	chr12_101739754_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-346	chr12	101739751	101739757	7mer-m8	101739738	101739758	151	-27.47
ADediting_294276	chr12_101739754_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-5001-3p	chr12	101739750	101739756	7mer-m8	101739732	101739757	154	-20.95
ADediting_294390	chr12_101743727_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-6807-5p	chr12	101743721	101743727	7mer-m8	101742499	101743728	147	-19.3
ADediting_294391	chr12_101743729_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-552-3p	chr12	101743728	101743735	8mer-1a	101743715	101743735	140	-14.1
ADediting_294392	chr12_101743735_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-10399-5p	chr12	101743731	101743737	7mer-m8	101743717	101743738	148	-10
ADediting_294392	chr12_101743735_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-6504-3p	chr12	101743731	101743737	7mer-m8	101743717	101743738	149	-15.11
ADediting_294393	chr12_101743736_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-10399-5p	chr12	101743731	101743737	7mer-m8	101743717	101743738	148	-10
ADediting_294393	chr12_101743736_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-5089-5p	chr12	101743735	101743741	7mer-m8	101743720	101743742	148	-13.62
ADediting_294393	chr12_101743736_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-6504-3p	chr12	101743731	101743737	7mer-m8	101743717	101743738	149	-15.11
ADediting_294396	chr12_101743762_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-1976	chr12	101743760	101743766	7mer-m8	101743746	101743767	148	-17.48
ADediting_294398	chr12_101743809_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-200c-5p	chr12	101743807	101743813	7mer-m8	101743786	101743814	141	-15.7
ADediting_294398	chr12_101743809_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-550a-3p	chr12	101743807	101743813	7mer-m8	101743791	101743814	149	-20.05
ADediting_294399	chr12_101743840_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-4735-5p	chr12	101743838	101743844	7mer-m8	101743824	101743845	140	-4.42
ADediting_294399	chr12_101743840_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-4775	chr12	101743837	101743843	7mer-m8	101743825	101743844	147	-5.24
ADediting_294400	chr12_101743843_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-4735-5p	chr12	101743838	101743844	7mer-m8	101743824	101743845	140	-4.42
ADediting_294400	chr12_101743843_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-4775	chr12	101743837	101743843	7mer-m8	101743825	101743844	147	-5.24
ADediting_294401	chr12_101743847_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-3622a-3p	chr12	101743845	101743851	7mer-m8	101743831	101743852	145	-15.17
ADediting_294401	chr12_101743847_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-3622b-3p	chr12	101743845	101743851	7mer-m8	101743833	101743852	141	-14.16
ADediting_294404	chr12_101743887_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-516a-3p	chr12	101743883	101743889	7mer-m8	101743873	101743890	140	-16.3
ADediting_294404	chr12_101743887_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-516b-3p	chr12	101743883	101743889	7mer-m8	101743873	101743890	140	-16.3
ADediting_294404	chr12_101743887_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-7162-5p	chr12	101743883	101743889	7mer-m8	101743874	101743890	142	-19.51
ADediting_294405	chr12_101743897_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-12125	chr12	101743894	101743900	7mer-m8	101743879	101743901	154	-21.54
ADediting_294405	chr12_101743897_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-1229-3p	chr12	101743893	101743899	7mer-m8	101743879	101743900	152	-24.39
ADediting_294405	chr12_101743897_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-6862-3p	chr12	101743893	101743899	7mer-1a	101743875	101743899	140	-27.53
ADediting_294406	chr12_101743910_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-3155a	chr12	101743909	101743915	7mer-m8	101743895	101743916	153	-20.27
ADediting_294406	chr12_101743910_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-3155b	chr12	101743909	101743915	7mer-m8	101743898	101743916	153	-20.27
ADediting_294407	chr12_101743931_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-4418	chr12	101743927	101743933	7mer-m8	101743918	101743934	146	-15.98
ADediting_294407	chr12_101743931_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-509-3-5p	chr12	101743927	101743933	7mer-m8	101743916	101743934	154	-19.24
ADediting_294407	chr12_101743931_+	ENSG00000111666.11	ENST00000552213.1	CHPT1-207	hsa-miR-509-5p	chr12	101743927	101743933	7mer-m8	101743914	101743934	140	-16.58

RNA A-to-I editing in miRNAs gained binding to lncRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

ADediting_1097295

chr3_85385762_+

ENSG00000111666.11

ENST00000549872.5

CHPT1-205

hsa-miR-5688

chr12

101726704

101726710

7mer-m8

101726688

101726711

149

-11.1

ADediting_1535951

chr14_100874558_+

ENSG00000111666.11

ENST00000549872.5

CHPT1-205

hsa-miR-337-3p

chr12

101726974

101726981

8mer-1a

101726964

101726981

147

-15.13

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

ADeditom_ID

Position

ENSG

ENST

Transcript name

miRNA ID

Chromosome

Targt

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

ADediting_1556067

chr19_40282625_-

ENSG00000111666.11

ENST00000549872.5

CHPT1-205

hsa-miR-641

chr12

101726559

101726565

7mer-1a

101726543

101726565

141

-13.59

ADediting_1631458

chr19_40282624_-

ENSG00000111666.11

ENST00000549872.5

CHPT1-205

hsa-miR-641

chr12

101726559

101726565

7mer-1a

101726543

101726565

141

-13.59

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for CHPT1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000552213.1	lncRNA

RNA A-to-I editing in miRNA.

ADeditom_ID

ENST

mir_ID

Editing_Information

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

RNA A-to-I editing in mRNA.

ADeditom_ID

ENST

Editing_Information

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

RNA A-to-I editing in lncRNA.

ADeditom_ID	ENST	Editing_Information	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
ADediting_294273	ENST00000552213.1	chr12_101739705_+	128	-207.00	-200.90	-227.90
ADediting_294274	ENST00000552213.1	chr12_101739721_+	144	-202.00	-200.90	-227.90
ADediting_294275	ENST00000552213.1	chr12_101739728_+	151	-203.70	-200.90	-227.90
ADediting_294276	ENST00000552213.1	chr12_101739754_+	177	-202.80	-200.90	-227.90
ADediting_294390	ENST00000552213.1	chr12_101743727_+	315	-203.60	-200.90	-227.90
ADediting_294391	ENST00000552213.1	chr12_101743729_+	317	-201.00	-200.90	-227.90
ADediting_294392	ENST00000552213.1	chr12_101743735_+	323	-202.20	-200.90	-227.90
ADediting_294393	ENST00000552213.1	chr12_101743736_+	324	-203.50	-200.90	-227.90
ADediting_294394	ENST00000552213.1	chr12_101743752_+	340	-201.80	-200.90	-227.90
ADediting_294395	ENST00000552213.1	chr12_101743759_+	347	-206.20	-200.90	-227.90
ADediting_294396	ENST00000552213.1	chr12_101743762_+	350	-200.20	-200.90	-227.90
ADediting_294397	ENST00000552213.1	chr12_101743790_+	378	-202.70	-200.90	-227.90
ADediting_294398	ENST00000552213.1	chr12_101743809_+	397	-203.80	-200.90	-227.90
ADediting_294399	ENST00000552213.1	chr12_101743840_+	428	-201.60	-200.90	-227.90
ADediting_294400	ENST00000552213.1	chr12_101743843_+	431	-200.90	-200.90	-227.90
ADediting_294401	ENST00000552213.1	chr12_101743847_+	435	-200.20	-200.90	-227.90
ADediting_294402	ENST00000552213.1	chr12_101743873_+	461	-201.90	-200.90	-227.90
ADediting_294403	ENST00000552213.1	chr12_101743883_+	471	-200.70	-200.90	-227.90
ADediting_294404	ENST00000552213.1	chr12_101743887_+	475	-201.30	-200.90	-227.90
ADediting_294405	ENST00000552213.1	chr12_101743897_+	485	-200.90	-200.90	-227.90
ADediting_294406	ENST00000552213.1	chr12_101743910_+	498	-203.40	-200.90	-227.90
ADediting_294407	ENST00000552213.1	chr12_101743931_+	519	-200.80	-200.90	-227.90
ADediting_294408	ENST00000552213.1	chr12_101743945_+	533	-200.50	-200.90	-227.90

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Relation with ADAR for CHPT1

Correlation between ADAR gene expression and RNA editing frequency

Tissue	ADeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
DLPFC	ADediting_294231	chr12_101709186_+	0.711084052843003	-0.0211203125152067	0.077769117590113	-0.100328344414571	9.44498150961751e-09	0.318776089199502
CER	ADediting_294322	chr12_101741377_+	0.00375053480808285	0.235291146702726	0.000147795795789615	0.304976262860598	0.74298715324463	0.0269938721735111
CER	ADediting_294323	chr12_101741383_+	0.00596106504832563	0.223550924088866	0.000185099196555814	0.300670847167526	0.117119515910688	-0.128487270874011
CER	ADediting_294325	chr12_101741430_+	0.00103392582193755	0.265304917304201	7.53071077148639e-09	0.45009018969837	0.47455433036008	0.0588282678755408
CER	ADediting_294326	chr12_101741433_+	0.0197136078896822	0.190236338171219	4.4982599660027e-06	0.364596876897188	0.676423066741979	0.0343537356872891
CER	ADediting_294327	chr12_101741437_+	0.0161469260108709	0.196143566366081	9.84898533154553e-06	0.352239540475075	0.481971594749955	0.0578465498069742
CER	ADediting_294328	chr12_101741439_+	0.000772883503107919	0.271625003379237	9.94618138141104e-09	0.446824133112128	0.27293791233645	0.0900857771306858
CER	ADediting_294331	chr12_101741471_+	0.00193070059779264	0.251199491251176	1.93723398023611e-06	0.377333154148168	0.53325956911141	0.0512662354765911
CER	ADediting_294335	chr12_101742136_+	0.0585111857268224	0.154831171459153	0.00010733893058839	0.310982746792063	0.937437002379647	0.00646281095548019
CER	ADediting_294342	chr12_101742166_+	0.0356589089708541	0.171689696855826	6.21645636564478e-05	0.32095310183003	0.700789464514847	0.0316310436490438
CER	ADediting_294343	chr12_101742167_+	0.0132597440407373	0.201825860208504	6.78298202386128e-05	0.319384406193969	0.150857571715559	0.117867218896799
CER	ADediting_294378	chr12_101742306_+	0.00274429108268834	0.242900910098056	1.74290521659274e-05	0.342902127624687	0.939299087492884	0.00627008184046486
CER	ADediting_294384	chr12_101742343_+	0.000507322733430824	0.280509544911278	4.69294401070874e-08	0.427950950058831	0.32828277864588	0.0803620428680797
CER	ADediting_294388	chr12_101742368_+	0.0114967427419084	0.205854290204924	4.50409759010356e-06	0.364576845542371	0.0562930730118321	0.156198273675679
DLPFC	ADediting_294393	chr12_101743736_+	0.000335654594460314	0.202382980193436	0.366855509343892	0.0514255166254227	2.16655328303001e-16	0.443779622860947
TCX	ADediting_294396	chr12_101743762_+	0.000123924111939379	0.308300452389357	0.000354429386881741	0.287853042382651	0.572607113668238	0.0464316111515764
CER	ADediting_294403	chr12_101743883_+	0.00099488722771478	0.266149645001296	0.000101219345809227	0.312071306266688	0.00391020793360184	0.234257569551025

Correlation between ADAR gene expression and this gene's expression

Tissue	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
DLPFC	9.22494994978153e-20	0.485773243191816	2.74356988782642e-11	0.366485822190311	5.48761777197098e-05	0.227024501603021
AC	1.46757193257412e-33	0.667111538260883	6.45550559973839e-19	0.522519867387343	3.62816351593829e-22	0.561443658471676
PCC	4.51546742246482e-06	0.324924638521704	1.72486045530983e-05	0.305516742698004	6.15526548983657e-05	0.285728479158206
CER	2.34800320632116e-14	0.571033047609336	9.2955794829927e-14	0.560003860643716	1.02676651028548e-09	0.472530101310709
TCX	6.4309321337596e-08	0.423973599355918	0.032069547970418	0.175129624375858	0.00461920186421929	0.230082635447511
FP	1.5288531971369e-18	0.596603161936886	5.3997114721426e-16	0.558596296674816	9.99806580975484e-09	0.413107792621053
IFG	0.000767767618583254	0.628436003641895	0.000759122354878369	0.628884616954811	0.0226663491485465	0.453883375872903
PG	4.83554672752861e-41	0.790545995082017	1.83546556237318e-20	0.611552508845101	0.544979679634578	0.0446616731383348
STG	4.19764219394849e-09	0.587623142896655	2.83028019927636e-09	0.592818723326979	0.0498393148784962	0.214714064868691

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Relation with AD stages for CHPT1

Correlation between AD stages and RNA editing frequency

Tissue	ADeditomID	position	P-val	Coeff.
CER	ADediting_294291	chr12_101741258_+	2.61773512127443e-05	0.392757524465075
CER	ADediting_294292	chr12_101741265_+	0.00023542706474376	0.346862208635755
CER	ADediting_294325	chr12_101741430_+	0.00129157619378702	0.305745102871086
CER	ADediting_294328	chr12_101741439_+	0.00120176791369882	0.307608365219321
IFG	ADediting_294330	chr12_101741454_+	0.0354713369979928	0.422303326441651
IFG	ADediting_294346	chr12_101742174_+	0.0354713369979928	0.422303326441651
IFG	ADediting_294378	chr12_101742306_+	0.0354713369979928	0.422303326441651
IFG	ADediting_294395	chr12_101743759_+	0.0354713369979928	0.422303326441651
IFG	ADediting_294404	chr12_101743887_+	0.0353488225216572	0.42255826357712

Correlation between AD stages and this gene's expression

Tissue	P-val	Coeff.
CER	1.89583670782485e-06	0.439953323571477
TCX	4.97418545016639e-09	0.530425260203998

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RelatedDrugs for CHPT1

Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for CHPT1

Diseases associated with this gene.
(DisGeNet 4.0)

Gene	Disease ID	Disease name	# pubmeds	Source
CHPT1	C0035222	Respiratory Distress Syndrome, Adult	1	CTD_human

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Gene summary for CHPT1

RNA A-to-I events for CHPT1

RNA editing positional annotations for CHPT1 using Annovar

RNA A-to-I editing events in the alternative splicing sites for CHPT1

Differntial gene expression between RNA A-to-I edited versus non-edited samples for CHPT1

Protein coding region RNA A-to-I editings for CHPT1

The effects of the RNA editing to the miRNA binding sites for CHPT1

The effects of the RNA editing to the stability of the RNA structures for CHPT1

Relation with ADAR for CHPT1

Relation with AD stages for CHPT1

RelatedDrugs for CHPT1

RelatedDiseases for CHPT1

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited versus non-edited samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with AD stages
	Related drugs with this gene
	Related diseases with this gene