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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited versus non-edited samples

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Protein coding region RNA A-to-I editings

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The effects of the RNA editing to the miRNA binding sites

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The effects of the RNA editing to the stability of the RNA structures

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Relation with ADAR

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Relation with AD stages

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Related drugs with this gene

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Related diseases with this gene


Gene summary for NRIP3

check button Gene summary
Gene informationGene symbol

NRIP3

Gene ID

56675

Gene namenuclear receptor interacting protein 3
SynonymsC11orf14|NY-SAR-105
Cytomap

11p15.4

Type of geneprotein-coding
Descriptionnuclear receptor-interacting protein 3sarcoma antigen NY-SAR-105
Modification date20200313
UniProtAcc

Q9NQ35,

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for NRIP3

check buttonRNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
* This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
all structure

check button RNA editing frequencies across three data sets.
boxplot

check buttonThe number of RNA A-to-I editing events in different types of transcripts (# event, percentage).
boxplot

check button RNA A-to-I editing events in AD.
ADediting_290183(8981213, -), ADediting_290184(8981225, -), ADediting_290185(8981226, -), ADediting_290186(8981235, -), ADediting_290187(8981240, -), ADediting_290188(8981280, -), ADediting_290189(8981301, -), ADediting_290190(8981304, -), ADediting_290191(8981340, -), ADediting_290192(8981344, -), ADediting_290193(8981346, -), ADediting_290194(8981356, -), ADediting_290195(8981359, -), ADediting_290196(8981360, -), ADediting_290197(8981368, -), ADediting_290198(8981381, -), ADediting_290199(8981386, -), ADediting_290200(8981405, -), ADediting_290201(8981424, -), ADediting_290202(8981454, -), ADediting_290203(8981460, -), ADediting_290204(8981462, -), ADediting_290205(8981800, -), ADediting_290206(8984530, -), ADediting_290207(8984937, -), ADediting_290208(8985016, -), ADediting_290209(8985024, -), ADediting_290210(8986801, -), ADediting_290211(8986853, -), ADediting_290212(8996349, -), ADediting_290213(8996397, -), ADediting_290214(8996405, -), ADediting_290215(8996419, -), ADediting_290216(8996445, -), ADediting_290217(8996469, -), ADediting_290218(8996526, -), ADediting_290219(8996560, -), ADediting_290220(8998974, -), ADediting_290221(8998977, -), ADediting_1529235(8981276, -), ADediting_1529236(8996410, -), ADediting_1529237(8996482, -),

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RNA editing positional annotations for NRIP3 using Annovar

check button Protein coding RNA editing(s).
ADeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
ADeditome IDPositionVariant type
ADediting_290183chr11_8981213_-UTR3
ADediting_290184chr11_8981225_-UTR3
ADediting_290185chr11_8981226_-UTR3
ADediting_290186chr11_8981235_-UTR3
ADediting_290187chr11_8981240_-UTR3
ADediting_290188chr11_8981280_-UTR3
ADediting_290189chr11_8981301_-UTR3
ADediting_290190chr11_8981304_-UTR3
ADediting_290191chr11_8981340_-UTR3
ADediting_290192chr11_8981344_-UTR3
ADediting_290193chr11_8981346_-UTR3
ADediting_290194chr11_8981356_-UTR3
ADediting_290195chr11_8981359_-UTR3
ADediting_290196chr11_8981360_-UTR3
ADediting_290197chr11_8981368_-UTR3
ADediting_290198chr11_8981381_-UTR3
ADediting_290199chr11_8981386_-UTR3
ADediting_290200chr11_8981405_-UTR3
ADediting_290201chr11_8981424_-UTR3
ADediting_290202chr11_8981454_-UTR3
ADediting_290203chr11_8981460_-UTR3
ADediting_290204chr11_8981462_-UTR3
ADediting_290205chr11_8981800_-UTR3
ADediting_290206chr11_8984530_-intronic
ADediting_290207chr11_8984937_-intronic
ADediting_290208chr11_8985016_-intronic
ADediting_290209chr11_8985024_-intronic
ADediting_290210chr11_8986801_-intronic
ADediting_290211chr11_8986853_-intronic
ADediting_290212chr11_8996349_-intronic
ADediting_290213chr11_8996397_-intronic
ADediting_290214chr11_8996405_-intronic
ADediting_290215chr11_8996419_-intronic
ADediting_290216chr11_8996445_-intronic
ADediting_290217chr11_8996469_-intronic
ADediting_290218chr11_8996526_-intronic
ADediting_290219chr11_8996560_-intronic
ADediting_290220chr11_8998974_-intronic
ADediting_290221chr11_8998977_-intronic
ADediting_1529235chr11_8981276_-UTR3
ADediting_1529236chr11_8996410_-intronic
ADediting_1529237chr11_8996482_-intronic

check button Repat-regional RNA editing(s).
ADeditome IDPositionRepeat familyRepeat sub familyRepeat name
ADediting_290183chr11_8981213_-SINEAluName=AluY
ADediting_290184chr11_8981225_-SINEAluName=AluY
ADediting_290185chr11_8981226_-SINEAluName=AluY
ADediting_290186chr11_8981235_-SINEAluName=AluY
ADediting_290187chr11_8981240_-SINEAluName=AluY
ADediting_290188chr11_8981280_-SINEAluName=AluY
ADediting_290189chr11_8981301_-SINEAluName=AluY
ADediting_290190chr11_8981304_-SINEAluName=AluY
ADediting_290191chr11_8981340_-SINEAluName=AluY
ADediting_290192chr11_8981344_-SINEAluName=AluY
ADediting_290193chr11_8981346_-SINEAluName=AluY
ADediting_290194chr11_8981356_-SINEAluName=AluY
ADediting_290195chr11_8981359_-SINEAluName=AluY
ADediting_290196chr11_8981360_-SINEAluName=AluY
ADediting_290197chr11_8981368_-SINEAluName=AluY
ADediting_290198chr11_8981381_-SINEAluName=AluY
ADediting_290199chr11_8981386_-SINEAluName=AluY
ADediting_290200chr11_8981405_-SINEAluName=AluY
ADediting_290201chr11_8981424_-SINEAluName=AluY
ADediting_290202chr11_8981454_-SINEAluName=AluY
ADediting_290203chr11_8981460_-SINEAluName=AluY
ADediting_290204chr11_8981462_-SINEAluName=AluY
ADediting_290206chr11_8984530_-SINEAluName=AluSq
ADediting_290207chr11_8984937_-SINEAluName=AluSp
ADediting_290208chr11_8985016_-SINEAluName=AluSp
ADediting_290209chr11_8985024_-SINEAluName=AluSp
ADediting_290210chr11_8986801_-SINEAluName=AluJb
ADediting_290211chr11_8986853_-SINEAluName=AluJb
ADediting_290212chr11_8996349_-SINEAluName=AluSx
ADediting_290213chr11_8996397_-SINEAluName=AluSx
ADediting_290214chr11_8996405_-SINEAluName=AluSx
ADediting_290215chr11_8996419_-SINEAluName=AluSx
ADediting_290216chr11_8996445_-SINEAluName=AluSx
ADediting_290217chr11_8996469_-SINEAluName=AluSx
ADediting_290218chr11_8996526_-SINEAluName=AluSx
ADediting_290219chr11_8996560_-SINEAluName=AluSx
ADediting_290220chr11_8998974_-SINEAluName=AluY
ADediting_290221chr11_8998977_-SINEAluName=AluY
ADediting_1529235chr11_8981276_-SINEAluName=AluY
ADediting_1529236chr11_8996410_-SINEAluName=AluSx
ADediting_1529237chr11_8996482_-SINEAluName=AluSx

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RNA A-to-I editing events in the alternative splicing sites for NRIP3

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeADeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for NRIP3

check button Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.
* The grey color means N/A.

check button Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event.
boxplot
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check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
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check button - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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ADeditome IDChrPositoingSkipped exonENSGENSTs

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Protein coding region RNA A-to-I editings for NRIP3

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for NRIP3

check buttonRNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure.
all structure

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1529235chr11_8981276_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-7977chr11898127389812797mer-m889812728981289158-18.92
ADediting_290184chr11_8981225_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-3189-3pchr11898122489812307mer-m889812238981242153-22.76
ADediting_290184chr11_8981225_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-6813-3pchr11898122389812297mer-m889812228981242140-10.68
ADediting_290185chr11_8981226_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-326chr11898122489812307mer-m889812238981242140-13.25
ADediting_290185chr11_8981226_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-330-5pchr11898122489812307mer-m889812238981246141-19.53
ADediting_290185chr11_8981226_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-4314chr11898122589812317mer-m889812248981242141-20.85
ADediting_290185chr11_8981226_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-514a-5pchr11898122389812297mer-m889812228981245150-18.62
ADediting_290187chr11_8981240_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-4767chr11898123989812457mer-m889812388981260144-22.51
ADediting_290187chr11_8981240_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-6765-5pchr11898123589812417mer-m889812348981261162-31.65
ADediting_290188chr11_8981280_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-4662a-5pchr11898127689812827mer-m889812758981303142-20.14
ADediting_290191chr11_8981340_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-6720-3pchr11898133989813457mer-m889813388981359152-20.67
ADediting_290193chr11_8981346_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-17-3pchr11898134389813497mer-m889813428981364158-20.42
ADediting_290194chr11_8981356_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-3614-5pchr11898135689813627mer-m889813558981378152-25.27
ADediting_290194chr11_8981356_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-4691-3pchr11898135289813587mer-m889813518981378150-26.36
ADediting_290196chr11_8981360_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-6771-5pchr11898135989813657mer-m889813588981377160-34.33
ADediting_290197chr11_8981368_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-6089chr11898136389813697mer-m889813628981386169-41.89
ADediting_290198chr11_8981381_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-4304chr11898138189813877mer-m889813808981397150-21.87
ADediting_290200chr11_8981405_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-17-3pchr11898140589814117mer-m889814048981426157-18.55
ADediting_290200chr11_8981405_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-596chr11898140289814087mer-m889814018981421140-18.43
ADediting_290203chr11_8981460_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-10a-5pchr11898145889814647mer-m889814578981479141-11.43
ADediting_290203chr11_8981460_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-10b-5pchr11898145889814647mer-m889814578981479149-11.5
ADediting_290203chr11_8981460_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-339-5pchr11898145989814657mer-m889814588981479143-14.31
ADediting_290203chr11_8981460_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-4725-5pchr11898145789814637mer-m889814568981476140-15.96
ADediting_290203chr11_8981460_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-504-5pchr11898145789814637mer-m889814568981476149-18.8
ADediting_290203chr11_8981460_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-5699-3pchr11898146089814667mer-m889814598981480140-16.12
ADediting_290205chr11_8981800_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-2682-3pchr11898179889818047mer-m889817978981818147-15.81
ADediting_290205chr11_8981800_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-6781-3pchr11898179889818047mer-m889817978981818145-15.13
ADediting_290205chr11_8981800_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-6819-3pchr11898179689818038mer-1a89817968981816142-12.2
ADediting_290205chr11_8981800_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-6877-3pchr11898179689818038mer-1a89817968981816140-14.71

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_290185chr11_8981226_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-887-5pchr11898122589812328mer-1a89812258981244143-13.53
ADediting_290186chr11_8981235_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-4478chr11898123189812377mer-m889812308981246154-23.4
ADediting_290186chr11_8981235_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-485-5pchr11898123089812367mer-m889812298981249144-17.07
ADediting_290186chr11_8981235_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-6884-5pchr11898123089812367mer-m889812298981250154-23.23
ADediting_290186chr11_8981235_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-7160-5pchr11898123389812397mer-m889812328981254154-24.76
ADediting_290186chr11_8981235_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-7162-3pchr11898123489812407mer-m889812338981251150-18.02
ADediting_290187chr11_8981240_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-1228-5pchr11898124089812467mer-m889812398981259147-26.06
ADediting_290187chr11_8981240_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-541-3pchr11898123889812447mer-m889812378981263149-21.93
ADediting_290187chr11_8981240_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-6134chr11898123589812428mer-1a89812358981253150-20.96
ADediting_290187chr11_8981240_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-654-5pchr11898123889812447mer-m889812378981257149-21.11
ADediting_290191chr11_8981340_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-3665chr11898133589813417mer-m889813348981351145-16.92
ADediting_290191chr11_8981340_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-550a-3-5pchr11898133989813457mer-m889813388981357143-16.67
ADediting_290191chr11_8981340_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-550a-5pchr11898133989813457mer-m889813388981360143-18.92
ADediting_290191chr11_8981340_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-764chr11898133689813427mer-m889813358981355153-23.08
ADediting_290192chr11_8981344_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-550a-3-5pchr11898133989813457mer-m889813388981357143-16.67
ADediting_290192chr11_8981344_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-550a-5pchr11898133989813457mer-m889813388981360143-18.92
ADediting_290194chr11_8981356_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-5690chr11898135289813587mer-m889813518981371145-16.74
ADediting_290195chr11_8981359_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-12126chr11898135689813638mer-1a89813568981379147-13.23
ADediting_290195chr11_8981359_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-887-5pchr11898135989813657mer-m889813588981377143-19.73
ADediting_290196chr11_8981360_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-12126chr11898135689813638mer-1a89813568981379147-13.23
ADediting_290196chr11_8981360_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-30b-3pchr11898135989813668mer-1a89813598981380151-15.38
ADediting_290196chr11_8981360_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-3689a-3pchr11898135989813668mer-1a89813598981379147-18.72
ADediting_290196chr11_8981360_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-3689b-3pchr11898135989813668mer-1a89813598981379147-17.55
ADediting_290196chr11_8981360_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-3689cchr11898135989813668mer-1a89813598981379147-17.55
ADediting_290196chr11_8981360_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-6779-5pchr11898135989813668mer-1a89813598981377148-22.58
ADediting_290196chr11_8981360_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-6780a-5pchr11898135989813668mer-1a89813598981382152-25.37
ADediting_290196chr11_8981360_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-887-5pchr11898135989813657mer-m889813588981377143-19.73
ADediting_290197chr11_8981368_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-4478chr11898136489813707mer-m889813638981378149-25.05
ADediting_290197chr11_8981368_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-4649-3pchr11898136789813737mer-m889813668981386140-14.11
ADediting_290197chr11_8981368_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-7160-5pchr11898136689813727mer-m889813658981384149-18.69
ADediting_290198chr11_8981381_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-5197-5pchr11898137989813857mer-m889813788981400155-13.37
ADediting_290200chr11_8981405_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-4327chr11898140389814097mer-m889814028981418146-20.29
ADediting_290200chr11_8981405_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-6516-5pchr11898140589814117mer-m889814048981429155-19.05
ADediting_290201chr11_8981424_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-1227-3pchr11898142389814297mer-m889814228981441148-22.88
ADediting_290202chr11_8981454_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-6864-3pchr11898145489814607mer-m889814538981474148-15.76
ADediting_290202chr11_8981454_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-759chr11898144989814557mer-m889814488981468145-15.6
ADediting_290203chr11_8981460_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-3664-5pchr11898145889814647mer-m889814578981478150-14.83
ADediting_290203chr11_8981460_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-4522chr11898145789814637mer-m889814568981476152-14.23
ADediting_290203chr11_8981460_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-6888-3pchr11898146089814667mer-m889814598981479143-9.14
ADediting_290204chr11_8981462_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-3664-5pchr11898145889814647mer-m889814578981478150-14.83
ADediting_290204chr11_8981462_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-4522chr11898145789814637mer-m889814568981476152-14.23
ADediting_290204chr11_8981462_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-6888-3pchr11898146089814667mer-m889814598981479143-9.14
ADediting_290205chr11_8981800_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-103a-1-5pchr11898179889818047mer-m889817978981818155-17.48
ADediting_290205chr11_8981800_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-103a-2-5pchr11898179889818047mer-m889817978981818155-18.36

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_1471004chr9_63819627_+ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-4477bchr11898190889819158mer-1a89819088981930164-17.36
ADediting_1596844chr1_162342605_+ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-556-3pchr11898161889816247mer-m889816178981638153-10.85
ADediting_496066chr15_66496985_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-4512chr11898182689818327mer-m889818258981845150-20.49
ADediting_98289chr1_32086992_+ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-5585-3pchr11898339789834037mer-m889833968983418151-21.96

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
ADeditom_IDPositionENSGENSTTranscript namemiRNA IDChromosomeTargtTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
ADediting_291761chr11_93733708_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-1304-3pchr11898151589815217mer-m889815148981535153-16.9
ADediting_496066chr15_66496985_-ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-4512chr11898271189827177mer-m889827108982731154-15.85
ADediting_496066chr15_66496985_-ENSG00000175352.11ENST00000534759.1NRIP3-205hsa-miR-4512chr11898271189827177mer-m889827108982731154-15.85
ADediting_527135chr16_24203190_+ENSG00000175352.11ENST00000309166.8NRIP3-201hsa-miR-1273h-3pchr11898352289835287mer-m889835218983542140-18.57
ADediting_527135chr16_24203190_+ENSG00000175352.11ENST00000531142.1NRIP3-204hsa-miR-1273h-3pchr11898352289835287mer-m889835218983542140-18.57

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for NRIP3

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000309166.8protein_codingSoverviewSoverview

check button RNA A-to-I editing in miRNA.
ADeditom_IDENSTmir_IDEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

check button RNA A-to-I editing in mRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
ADediting_290183ENST00000309166.8chr11_8981213_-3124-1246.80-1245.90-1273.30
ADediting_290184ENST00000309166.8chr11_8981225_-3112-1246.20-1245.90-1273.30
ADediting_290185ENST00000309166.8chr11_8981226_-3111-1248.40-1245.90-1273.30
ADediting_290186ENST00000309166.8chr11_8981235_-3102-1247.00-1245.90-1273.30
ADediting_290187ENST00000309166.8chr11_8981240_-3097-1246.50-1245.90-1273.30
ADediting_1529235ENST00000309166.8chr11_8981276_-3061-1246.40-1245.90-1273.30
ADediting_290188ENST00000309166.8chr11_8981280_-3057-1246.20-1245.90-1273.30
ADediting_290189ENST00000309166.8chr11_8981301_-3036-1245.90-1245.90-1273.30
ADediting_290190ENST00000309166.8chr11_8981304_-3033-1245.90-1245.90-1273.30
ADediting_290191ENST00000309166.8chr11_8981340_-2997-1246.50-1245.90-1273.30
ADediting_290192ENST00000309166.8chr11_8981344_-2993-1246.00-1245.90-1273.30
ADediting_290193ENST00000309166.8chr11_8981346_-2991-1247.60-1245.90-1273.30
ADediting_290194ENST00000309166.8chr11_8981356_-2981-1250.10-1245.90-1273.30
ADediting_290195ENST00000309166.8chr11_8981359_-2978-1249.50-1245.90-1273.30
ADediting_290196ENST00000309166.8chr11_8981360_-2977-1245.20-1245.90-1273.30
ADediting_290197ENST00000309166.8chr11_8981368_-2969-1249.10-1245.90-1273.30
ADediting_290198ENST00000309166.8chr11_8981381_-2956-1245.50-1245.90-1273.30
ADediting_290199ENST00000309166.8chr11_8981386_-2951-1247.30-1245.90-1273.30
ADediting_290200ENST00000309166.8chr11_8981405_-2932-1245.90-1245.90-1273.30
ADediting_290201ENST00000309166.8chr11_8981424_-2913-1246.10-1245.90-1273.30
ADediting_290202ENST00000309166.8chr11_8981454_-2883-1246.20-1245.90-1273.30
ADediting_290203ENST00000309166.8chr11_8981460_-2877-1245.00-1245.90-1273.30
ADediting_290204ENST00000309166.8chr11_8981462_-2875-1245.20-1245.90-1273.30
ADediting_290205ENST00000309166.8chr11_8981800_-2537-1252.50-1245.90-1273.30

check button RNA A-to-I editing in lncRNA.
ADeditom_IDENSTEditing_InformationEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for NRIP3

check button Correlation between ADAR gene expression and RNA editing frequency
TissueADeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

check button Correlation between ADAR gene expression and this gene's expression
TissueADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
DLPFC1.07226579779828e-880.85231924952291.34454454324264e-920.8613550355964670.2229980406405370.0694084275902113
AC1.3657166389371e-490.7664644109871527.19854475272668e-540.7866974353974240.9741435658037720.00206023186291807
PCC1.14797298535174e-560.8583173517810121.89217613191307e-590.8682976739825140.44116914596854-0.0560553199042025
CER5.64135852327068e-230.695188475608415.10091593926796e-090.4546067563464780.387890367353321-0.0710053096038856
TCX1.52756200616439e-230.7016180658979399.95367517722544e-370.8139300729087990.000156019790577126-0.303946418406853
FP4.01097041789564e-100.4469259950067531.52700061005536e-170.5822770487312480.0310846535356317-0.161672480885452
IFG0.002682421201676440.5742536335717090.0179838745183660.4691667849902480.12653828475716-0.31386632138187
PG4.28307401729693e-300.7122491775407471.58430981363132e-290.707305196424340.00724356197389552-0.196309279777228
STG1.28102157947842e-120.6788287677528195.51110322474284e-130.6867642948943040.0759508417274782-0.19469315179346

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Relation with AD stages for NRIP3

check button Correlation between AD stages and RNA editing frequency
TissueADeditomIDpositionP-valCoeff.

check button Correlation between AD stages and this gene's expression
TissueP-valCoeff.
PCC2.22821525766747e-05-0.301648422812855

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RelatedDrugs for NRIP3

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.0 2018-04-02)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for NRIP3

check button Diseases associated with this gene.
(DisGeNet 4.0)
GeneDisease IDDisease name# pubmedsSource