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![]() | Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for PRKX |
Gene summary |
| Gene information | Gene symbol | PRKX | Gene ID | 5613 |
| Gene name | protein kinase X-linked | |
| Synonyms | PKX1 | |
| Cytomap | Xp22.33 | |
| Type of gene | protein-coding | |
| Description | cAMP-dependent protein kinase catalytic subunit PRKXprotein kinase PKX1protein kinase Xserine/threonine-protein kinase PRKX | |
| Modification date | 20200313 | |
| UniProtAcc | P51817, | |
| Context |
Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
| PRKX | GO:0018105 | peptidyl-serine phosphorylation | 16491121 |
| PRKX | GO:0030099 | myeloid cell differentiation | 9860982 |
| PRKX | GO:0030155 | regulation of cell adhesion | 17980165 |
| PRKX | GO:0030334 | regulation of cell migration | 17980165 |
| PRKX | GO:0046777 | protein autophosphorylation | 10026146|16491121 |
| PRKX | GO:0060562 | epithelial tube morphogenesis | 17980165 |
| PRKX | GO:0060993 | kidney morphogenesis | 17980165 |
| PRKX | GO:2000696 | regulation of epithelial cell differentiation involved in kidney development | 17980165 |
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RNA A-to-I events for PRKX |
RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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RNA editing frequencies across three data sets. |
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The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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RNA A-to-I editing events in AD. |
| ADediting_1499701(3606446, -), ADediting_1499702(3609191, -), ADediting_1499703(3609222, -), ADediting_1499704(3609224, -), ADediting_1499705(3609285, -), ADediting_1499706(3609289, -), ADediting_1499707(3609298, -), ADediting_1499708(3609299, -), ADediting_1499709(3609362, -), ADediting_1499710(3609364, -), ADediting_1499711(3609365, -), ADediting_1499712(3609374, -), ADediting_1499713(3609433, -), ADediting_1499714(3609434, -), ADediting_1499715(3609643, -), ADediting_1499716(3609654, -), ADediting_1499717(3609706, -), ADediting_1499718(3609735, -), ADediting_1499719(3610236, -), ADediting_1499720(3610289, -), ADediting_1499721(3610298, -), ADediting_1499722(3610314, -), ADediting_1499723(3610317, -), ADediting_1499724(3610339, -), ADediting_1499725(3610342, -), ADediting_1499726(3610360, -), ADediting_1499727(3610370, -), ADediting_1499728(3610382, -), ADediting_1499729(3610399, -), ADediting_1499730(3610419, -), ADediting_1499731(3610430, -), ADediting_1499732(3610435, -), ADediting_1499733(3610476, -), ADediting_1499734(3615128, -), ADediting_1499735(3635648, -), ADediting_1499736(3635712, -), ADediting_1499737(3635817, -), ADediting_1499738(3636657, -), ADediting_1499739(3636675, -), ADediting_1499740(3636784, -), ADediting_1499741(3638041, -), ADediting_1499742(3654599, -), ADediting_1499743(3654613, -), ADediting_1499744(3658129, -), ADediting_1499745(3658173, -), ADediting_1499746(3658194, -), ADediting_1499747(3658209, -), ADediting_1499748(3658218, -), ADediting_1499749(3658223, -), ADediting_1499750(3684169, -), ADediting_1499751(3695654, -), ADediting_1499752(3697097, -), ADediting_1499753(3697109, -), ADediting_1499754(3697110, -), ADediting_1499755(3697133, -), ADediting_1499756(3697135, -), ADediting_1499757(3697151, -), ADediting_1499758(3697161, -), ADediting_1499759(3697169, -), ADediting_1499760(3697366, -), ADediting_1499761(3698685, -), ADediting_1499762(3698696, -), ADediting_1499763(3701233, -), ADediting_1499764(3701324, -), ADediting_1499765(3704421, -), ADediting_1499766(3704591, -), ADediting_1499767(3705182, -), ADediting_1499768(3705253, -), ADediting_1499769(3706313, -), ADediting_1499770(3706388, -), ADediting_1499771(3706408, -), ADediting_1499772(3706415, -), ADediting_1499773(3706921, -), ADediting_1499774(3707032, -), ADediting_1499775(3707065, -), ADediting_1499776(3707070, -), ADediting_1499777(3707075, -), ADediting_1499778(3707081, -), ADediting_1499779(3707114, -), ADediting_1499780(3708764, -), ADediting_1499781(3710653, -), ADediting_1595173(3609595, -), ADediting_1595174(3609609, -), ADediting_1595175(3609728, -), ADediting_1595176(3609729, -), ADediting_1595177(3610224, -), ADediting_1595178(3658185, -), |
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RNA editing positional annotations for PRKX using Annovar |
Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_1499701 | chrX_3606446_- | UTR3 |
| ADediting_1499702 | chrX_3609191_- | intronic |
| ADediting_1499703 | chrX_3609222_- | intronic |
| ADediting_1499704 | chrX_3609224_- | intronic |
| ADediting_1499705 | chrX_3609285_- | intronic |
| ADediting_1499706 | chrX_3609289_- | intronic |
| ADediting_1499707 | chrX_3609298_- | intronic |
| ADediting_1499708 | chrX_3609299_- | intronic |
| ADediting_1499709 | chrX_3609362_- | intronic |
| ADediting_1499710 | chrX_3609364_- | intronic |
| ADediting_1499711 | chrX_3609365_- | intronic |
| ADediting_1499712 | chrX_3609374_- | intronic |
| ADediting_1499713 | chrX_3609433_- | intronic |
| ADediting_1499714 | chrX_3609434_- | intronic |
| ADediting_1499715 | chrX_3609643_- | intronic |
| ADediting_1499716 | chrX_3609654_- | intronic |
| ADediting_1499717 | chrX_3609706_- | intronic |
| ADediting_1499718 | chrX_3609735_- | intronic |
| ADediting_1499719 | chrX_3610236_- | intronic |
| ADediting_1499720 | chrX_3610289_- | intronic |
| ADediting_1499721 | chrX_3610298_- | intronic |
| ADediting_1499722 | chrX_3610314_- | intronic |
| ADediting_1499723 | chrX_3610317_- | intronic |
| ADediting_1499724 | chrX_3610339_- | intronic |
| ADediting_1499725 | chrX_3610342_- | intronic |
| ADediting_1499726 | chrX_3610360_- | intronic |
| ADediting_1499727 | chrX_3610370_- | intronic |
| ADediting_1499728 | chrX_3610382_- | intronic |
| ADediting_1499729 | chrX_3610399_- | intronic |
| ADediting_1499730 | chrX_3610419_- | intronic |
| ADediting_1499731 | chrX_3610430_- | intronic |
| ADediting_1499732 | chrX_3610435_- | intronic |
| ADediting_1499733 | chrX_3610476_- | intronic |
| ADediting_1499734 | chrX_3615128_- | intronic |
| ADediting_1499735 | chrX_3635648_- | intronic |
| ADediting_1499736 | chrX_3635712_- | intronic |
| ADediting_1499737 | chrX_3635817_- | intronic |
| ADediting_1499738 | chrX_3636657_- | intronic |
| ADediting_1499739 | chrX_3636675_- | intronic |
| ADediting_1499740 | chrX_3636784_- | intronic |
| ADediting_1499741 | chrX_3638041_- | intronic |
| ADediting_1499742 | chrX_3654599_- | intronic |
| ADediting_1499743 | chrX_3654613_- | intronic |
| ADediting_1499744 | chrX_3658129_- | intronic |
| ADediting_1499745 | chrX_3658173_- | intronic |
| ADediting_1499746 | chrX_3658194_- | intronic |
| ADediting_1499747 | chrX_3658209_- | intronic |
| ADediting_1499748 | chrX_3658218_- | intronic |
| ADediting_1499749 | chrX_3658223_- | intronic |
| ADediting_1499750 | chrX_3684169_- | intronic |
| ADediting_1499751 | chrX_3695654_- | intronic |
| ADediting_1499752 | chrX_3697097_- | intronic |
| ADediting_1499753 | chrX_3697109_- | intronic |
| ADediting_1499754 | chrX_3697110_- | intronic |
| ADediting_1499755 | chrX_3697133_- | intronic |
| ADediting_1499756 | chrX_3697135_- | intronic |
| ADediting_1499757 | chrX_3697151_- | intronic |
| ADediting_1499758 | chrX_3697161_- | intronic |
| ADediting_1499759 | chrX_3697169_- | intronic |
| ADediting_1499760 | chrX_3697366_- | intronic |
| ADediting_1499761 | chrX_3698685_- | intronic |
| ADediting_1499762 | chrX_3698696_- | intronic |
| ADediting_1499763 | chrX_3701233_- | intronic |
| ADediting_1499764 | chrX_3701324_- | intronic |
| ADediting_1499765 | chrX_3704421_- | intronic |
| ADediting_1499766 | chrX_3704591_- | intronic |
| ADediting_1499767 | chrX_3705182_- | intronic |
| ADediting_1499768 | chrX_3705253_- | intronic |
| ADediting_1499769 | chrX_3706313_- | intronic |
| ADediting_1499770 | chrX_3706388_- | intronic |
| ADediting_1499771 | chrX_3706408_- | intronic |
| ADediting_1499772 | chrX_3706415_- | intronic |
| ADediting_1499773 | chrX_3706921_- | intronic |
| ADediting_1499774 | chrX_3707032_- | intronic |
| ADediting_1499775 | chrX_3707065_- | intronic |
| ADediting_1499776 | chrX_3707070_- | intronic |
| ADediting_1499777 | chrX_3707075_- | intronic |
| ADediting_1499778 | chrX_3707081_- | intronic |
| ADediting_1499779 | chrX_3707114_- | intronic |
| ADediting_1499780 | chrX_3708764_- | intronic |
| ADediting_1499781 | chrX_3710653_- | intronic |
| ADediting_1595173 | chrX_3609595_- | intronic |
| ADediting_1595174 | chrX_3609609_- | intronic |
| ADediting_1595175 | chrX_3609728_- | intronic |
| ADediting_1595176 | chrX_3609729_- | intronic |
| ADediting_1595177 | chrX_3610224_- | intronic |
| ADediting_1595178 | chrX_3658185_- | intronic |
Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_1499701 | chrX_3606446_- | SINE | Alu | Name=AluSx1 |
| ADediting_1499702 | chrX_3609191_- | SINE | Alu | Name=AluSq |
| ADediting_1499703 | chrX_3609222_- | SINE | Alu | Name=AluSq |
| ADediting_1499704 | chrX_3609224_- | SINE | Alu | Name=AluSq |
| ADediting_1499705 | chrX_3609285_- | SINE | Alu | Name=AluSq |
| ADediting_1499706 | chrX_3609289_- | SINE | Alu | Name=AluSq |
| ADediting_1499707 | chrX_3609298_- | SINE | Alu | Name=AluSq |
| ADediting_1499708 | chrX_3609299_- | SINE | Alu | Name=AluSq |
| ADediting_1499709 | chrX_3609362_- | SINE | Alu | Name=AluSq |
| ADediting_1499710 | chrX_3609364_- | SINE | Alu | Name=AluSq |
| ADediting_1499711 | chrX_3609365_- | SINE | Alu | Name=AluSq |
| ADediting_1499712 | chrX_3609374_- | SINE | Alu | Name=AluSq |
| ADediting_1499713 | chrX_3609433_- | SINE | Alu | Name=AluSq |
| ADediting_1499714 | chrX_3609434_- | SINE | Alu | Name=AluSq |
| ADediting_1499715 | chrX_3609643_- | SINE | Alu | Name=AluJb |
| ADediting_1499716 | chrX_3609654_- | SINE | Alu | Name=AluJb |
| ADediting_1499717 | chrX_3609706_- | SINE | Alu | Name=AluJb |
| ADediting_1499718 | chrX_3609735_- | SINE | Alu | Name=AluJb |
| ADediting_1499719 | chrX_3610236_- | SINE | Alu | Name=AluSx1 |
| ADediting_1499720 | chrX_3610289_- | SINE | Alu | Name=AluSx1 |
| ADediting_1499721 | chrX_3610298_- | SINE | Alu | Name=AluSx1 |
| ADediting_1499722 | chrX_3610314_- | SINE | Alu | Name=AluSx1 |
| ADediting_1499723 | chrX_3610317_- | SINE | Alu | Name=AluSx1 |
| ADediting_1499724 | chrX_3610339_- | SINE | Alu | Name=AluSx1 |
| ADediting_1499725 | chrX_3610342_- | SINE | Alu | Name=AluSx1 |
| ADediting_1499726 | chrX_3610360_- | SINE | Alu | Name=AluSx1 |
| ADediting_1499727 | chrX_3610370_- | SINE | Alu | Name=AluSx1 |
| ADediting_1499728 | chrX_3610382_- | SINE | Alu | Name=AluSx1 |
| ADediting_1499729 | chrX_3610399_- | SINE | Alu | Name=AluSx1 |
| ADediting_1499730 | chrX_3610419_- | SINE | Alu | Name=AluSx1 |
| ADediting_1499731 | chrX_3610430_- | SINE | Alu | Name=AluSx1 |
| ADediting_1499732 | chrX_3610435_- | SINE | Alu | Name=AluSx1 |
| ADediting_1499733 | chrX_3610476_- | SINE | Alu | Name=AluSx1 |
| ADediting_1499734 | chrX_3615128_- | SINE | Alu | Name=AluJb |
| ADediting_1499735 | chrX_3635648_- | SINE | Alu | Name=AluJo |
| ADediting_1499736 | chrX_3635712_- | SINE | Alu | Name=AluJo |
| ADediting_1499737 | chrX_3635817_- | SINE | Alu | Name=AluJo |
| ADediting_1499738 | chrX_3636657_- | SINE | Alu | Name=AluSz |
| ADediting_1499739 | chrX_3636675_- | SINE | Alu | Name=AluSz |
| ADediting_1499740 | chrX_3636784_- | SINE | Alu | Name=AluSz |
| ADediting_1499741 | chrX_3638041_- | SINE | Alu | Name=AluSx1 |
| ADediting_1499742 | chrX_3654599_- | SINE | Alu | Name=AluJb |
| ADediting_1499743 | chrX_3654613_- | SINE | Alu | Name=AluJb |
| ADediting_1499744 | chrX_3658129_- | SINE | Alu | Name=AluSq2 |
| ADediting_1499745 | chrX_3658173_- | SINE | Alu | Name=AluSq2 |
| ADediting_1499746 | chrX_3658194_- | SINE | Alu | Name=AluSq2 |
| ADediting_1499747 | chrX_3658209_- | SINE | Alu | Name=AluSq2 |
| ADediting_1499748 | chrX_3658218_- | SINE | Alu | Name=AluSq2 |
| ADediting_1499749 | chrX_3658223_- | SINE | Alu | Name=AluSq2 |
| ADediting_1499750 | chrX_3684169_- | SINE | Alu | Name=AluSg |
| ADediting_1499751 | chrX_3695654_- | SINE | Alu | Name=AluJo |
| ADediting_1499752 | chrX_3697097_- | SINE | Alu | Name=AluJb |
| ADediting_1499753 | chrX_3697109_- | SINE | Alu | Name=AluJb |
| ADediting_1499754 | chrX_3697110_- | SINE | Alu | Name=AluJb |
| ADediting_1499755 | chrX_3697133_- | SINE | Alu | Name=AluJb |
| ADediting_1499756 | chrX_3697135_- | SINE | Alu | Name=AluJb |
| ADediting_1499757 | chrX_3697151_- | SINE | Alu | Name=AluJb |
| ADediting_1499758 | chrX_3697161_- | SINE | Alu | Name=AluJb |
| ADediting_1499759 | chrX_3697169_- | SINE | Alu | Name=AluJb |
| ADediting_1499760 | chrX_3697366_- | SINE | Alu | Name=AluJb |
| ADediting_1499761 | chrX_3698685_- | SINE | Alu | Name=AluSx1 |
| ADediting_1499762 | chrX_3698696_- | SINE | Alu | Name=AluSx1 |
| ADediting_1499763 | chrX_3701233_- | SINE | Alu | Name=AluJr |
| ADediting_1499764 | chrX_3701324_- | SINE | Alu | Name=AluJr |
| ADediting_1499765 | chrX_3704421_- | SINE | Alu | Name=AluJb |
| ADediting_1499766 | chrX_3704591_- | SINE | Alu | Name=AluJb |
| ADediting_1499767 | chrX_3705182_- | LTR | ERVL-MaLR | Name=MLT1A0 |
| ADediting_1499768 | chrX_3705253_- | LTR | ERVL-MaLR | Name=MLT1A0 |
| ADediting_1499769 | chrX_3706313_- | SINE | Alu | Name=AluJo |
| ADediting_1499770 | chrX_3706388_- | SINE | Alu | Name=AluJo |
| ADediting_1499771 | chrX_3706408_- | SINE | Alu | Name=AluJo |
| ADediting_1499772 | chrX_3706415_- | SINE | Alu | Name=AluJo |
| ADediting_1499773 | chrX_3706921_- | SINE | Alu | Name=AluJb |
| ADediting_1499774 | chrX_3707032_- | SINE | Alu | Name=AluJb |
| ADediting_1499775 | chrX_3707065_- | SINE | Alu | Name=AluJb |
| ADediting_1499776 | chrX_3707070_- | SINE | Alu | Name=AluJb |
| ADediting_1499777 | chrX_3707075_- | SINE | Alu | Name=AluJb |
| ADediting_1499778 | chrX_3707081_- | SINE | Alu | Name=AluJb |
| ADediting_1499779 | chrX_3707114_- | SINE | Alu | Name=AluJb |
| ADediting_1499780 | chrX_3708764_- | SINE | Alu | Name=AluSp |
| ADediting_1499781 | chrX_3710653_- | SINE | Alu | Name=AluSx1 |
| ADediting_1595173 | chrX_3609595_- | SINE | Alu | Name=AluJb |
| ADediting_1595174 | chrX_3609609_- | SINE | Alu | Name=AluJb |
| ADediting_1595175 | chrX_3609728_- | SINE | Alu | Name=AluJb |
| ADediting_1595176 | chrX_3609729_- | SINE | Alu | Name=AluJb |
| ADediting_1595177 | chrX_3610224_- | SINE | Alu | Name=AluSx1 |
| ADediting_1595178 | chrX_3658185_- | SINE | Alu | Name=AluSq2 |
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RNA A-to-I editing events in the alternative splicing sites for PRKX |
RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for PRKX |
Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event.* The grey color means N/A. |
Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.* Click on the image to enlarge it in a new window. |
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- Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples.* Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |
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Protein coding region RNA A-to-I editings for PRKX |
- Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for PRKX |
RNA A-to-I editings in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. |
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RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1499701 | chrX_3606446_- | ENSG00000183943.6 | ENST00000262848.6 | PRKX-201 | hsa-miR-4638-5p | chrX | 3606444 | 3606451 | 8mer-1a | 3606444 | 3606465 | 148 | -18.05 |
RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_1337757 | chr7_5495852_- | ENSG00000183943.6 | ENST00000262848.6 | PRKX-201 | hsa-miR-589-3p | chrX | 3604741 | 3604748 | 8mer-1a | 3604741 | 3604765 | 152 | -14.6 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000183943.6 | ENST00000262848.6 | PRKX-201 | hsa-miR-589-3p | chrX | 3604895 | 3604901 | 7mer-m8 | 3604894 | 3604915 | 147 | -16.2 |
| ADediting_1596844 | chr1_162342605_+ | ENSG00000183943.6 | ENST00000262848.6 | PRKX-201 | hsa-miR-556-3p | chrX | 3606130 | 3606136 | 7mer-m8 | 3606129 | 3606147 | 146 | -13.94 |
| ADediting_527135 | chr16_24203190_+ | ENSG00000183943.6 | ENST00000262848.6 | PRKX-201 | hsa-miR-1273h-3p | chrX | 3606296 | 3606302 | 7mer-m8 | 3606295 | 3606320 | 144 | -17.99 |
| ADediting_527135 | chr16_24203190_+ | ENSG00000183943.6 | ENST00000262848.6 | PRKX-201 | hsa-miR-1273h-3p | chrX | 3606335 | 3606341 | 7mer-m8 | 3606334 | 3606359 | 142 | -20.54 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000183943.6 | ENST00000262848.6 | PRKX-201 | hsa-miR-4775 | chrX | 3605602 | 3605608 | 7mer-m8 | 3605601 | 3605622 | 160 | -8.76 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000183943.6 | ENST00000262848.6 | PRKX-201 | hsa-miR-4775 | chrX | 3608407 | 3608413 | 7mer-m8 | 3608406 | 3608427 | 152 | -6.55 |
| ADediting_98289 | chr1_32086992_+ | ENSG00000183943.6 | ENST00000262848.6 | PRKX-201 | hsa-miR-5585-3p | chrX | 3605722 | 3605728 | 7mer-m8 | 3605721 | 3605739 | 148 | -17.17 |
RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| ADeditom_ID | Position | ENSG | ENST | Transcript name | miRNA ID | Chromosome | Targt | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| ADediting_107020 | chr1_37500952_- | ENSG00000183943.6 | ENST00000262848.6 | PRKX-201 | hsa-miR-5581-3p | chrX | 3606292 | 3606298 | 7mer-m8 | 3606291 | 3606312 | 140 | -11.33 |
| ADediting_107020 | chr1_37500952_- | ENSG00000183943.6 | ENST00000262848.6 | PRKX-201 | hsa-miR-5581-3p | chrX | 3606331 | 3606337 | 7mer-m8 | 3606330 | 3606351 | 140 | -9.15 |
| ADediting_1097295 | chr3_85385762_+ | ENSG00000183943.6 | ENST00000262848.6 | PRKX-201 | hsa-miR-5688 | chrX | 3604490 | 3604496 | 7mer-m8 | 3604489 | 3604514 | 148 | -11.04 |
| ADediting_1337757 | chr7_5495852_- | ENSG00000183943.6 | ENST00000262848.6 | PRKX-201 | hsa-miR-589-3p | chrX | 3604812 | 3604818 | 7mer-m8 | 3604811 | 3604833 | 154 | -21.57 |
| ADediting_1556067 | chr19_40282625_- | ENSG00000183943.6 | ENST00000262848.6 | PRKX-201 | hsa-miR-641 | chrX | 3608878 | 3608884 | 7mer-m8 | 3608877 | 3608900 | 140 | -9.63 |
| ADediting_1631458 | chr19_40282624_- | ENSG00000183943.6 | ENST00000262848.6 | PRKX-201 | hsa-miR-641 | chrX | 3608878 | 3608884 | 7mer-m8 | 3608877 | 3608900 | 140 | -9.63 |
| ADediting_843620 | chr2_207754818_+ | ENSG00000183943.6 | ENST00000262848.6 | PRKX-201 | hsa-miR-4775 | chrX | 3607135 | 3607141 | 7mer-m8 | 3607134 | 3607155 | 145 | -4.12 |
Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for PRKX |
- RNA A-to-I editing in mRNA.* Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000262848.6 | protein_coding | ![]() | ![]() |
RNA A-to-I editing in miRNA. |
| ADeditom_ID | ENST | mir_ID | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
RNA A-to-I editing in mRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| ADediting_1499701 | ENST00000262848.6 | chrX_3606446_- | 3996 | -1995.70 | -1995.70 | -1995.70 |
RNA A-to-I editing in lncRNA. |
| ADeditom_ID | ENST | Editing_Information | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for PRKX |
Correlation between ADAR gene expression and RNA editing frequency |
| Tissue | ADeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | ADediting_1499704 | chrX_3609224_- | 0.00818520248576174 | 0.149943765751349 | 0.385775372758328 | 0.0494291307817729 | 6.54332530416142e-13 | 0.393304935225657 |
| TCX | ADediting_1499716 | chrX_3609654_- | 0.614552259437254 | 0.0414466783030335 | 0.433736926940371 | -0.0643886925478794 | 7.48431184476426e-05 | 0.31760425123728 |
| TCX | ADediting_1499718 | chrX_3609735_- | 0.0517727643225431 | 0.159127837799763 | 0.523777580844459 | -0.0524573415244834 | 9.03214289939031e-09 | 0.447959751392342 |
| DLPFC | ADediting_1499723 | chrX_3610317_- | 0.026187957292237 | 0.126285557415658 | 0.98294639889253 | 0.00121895058667393 | 3.72234612064672e-20 | 0.490326570595514 |
| DLPFC | ADediting_1499726 | chrX_3610360_- | 0.00715296573690516 | 0.152482840238603 | 0.571358839576816 | -0.0322715531811818 | 2.00463763177195e-27 | 0.563949923729548 |
| DLPFC | ADediting_1499727 | chrX_3610370_- | 0.0060791381340311 | 0.155498576750934 | 0.823933733583361 | 0.0126872344428037 | 4.1127379893706e-24 | 0.53261406911247 |
| DLPFC | ADediting_1499728 | chrX_3610382_- | 0.0494036023923969 | 0.111711429977279 | 0.781097717958773 | -0.0158460466874871 | 2.53786748892072e-14 | 0.414805995052707 |
| DLPFC | ADediting_1499733 | chrX_3610476_- | 0.042429702167241 | 0.115336435746913 | 0.581179195945532 | -0.0314516629595537 | 3.84035585555287e-17 | 0.453654063116414 |
| TCX | ADediting_1499733 | chrX_3610476_- | 0.692642761045985 | 0.032537399499143 | 0.0118730607423354 | -0.204951014927091 | 1.02072924103492e-08 | 0.446518149658166 |
Correlation between ADAR gene expression and this gene's expression |
| Tissue | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| DLPFC | 0.079269806311809 | 0.0998279762788053 | 0.760425800635211 | -0.0173873191148852 | 9.93611060486085e-25 | 0.538705353440436 |
| AC | 3.06637280257026e-27 | 0.613470879521926 | 2.75445137170478e-14 | 0.456716936911125 | 1.03418999295395e-25 | 0.598766101427974 |
| PCC | 0.108292223116029 | 0.116568754194443 | 0.331682233905943 | 0.070615444566952 | 8.85397599897119e-11 | 0.447188355672206 |
| CER | 6.4764452585055e-08 | 0.4238839815567 | 8.3861019816651e-07 | 0.389479129174847 | 2.56584588031654e-21 | 0.675380823084684 |
| TCX | 0.0505308785802285 | 0.159969672231185 | 0.00141377652238242 | -0.258334029875924 | 1.47721655449389e-24 | 0.712702300290575 |
| FP | 0.00475071709361636 | 0.21073076325353 | 0.102551791730108 | 0.122770613243039 | 1.12883898397807e-21 | 0.637318925268332 |
| IFG | 0.88374863381125 | 0.0308144915177161 | 0.578483422548748 | 0.116714676047758 | 0.00434759282330467 | 0.550549275495962 |
| PG | 1.23005142162211e-10 | 0.449483819955228 | 2.78405811389388e-06 | 0.335835961787325 | 0.000105294055787382 | 0.280513506685864 |
| STG | 0.998870111042799 | 0.000156860268723735 | 0.143602064197464 | -0.160941963200733 | 6.39310101196529e-13 | 0.68538557929755 |
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Relation with AD stages for PRKX |
Correlation between AD stages and RNA editing frequency |
| Tissue | ADeditomID | position | P-val | Coeff. |
Correlation between AD stages and this gene's expression |
| Tissue | P-val | Coeff. |
| CER | 5.70469113042494e-09 | 0.524411671169853 |
| TCX | 2.57389322500973e-10 | 0.565981931757004 |
| PG | 3.25821605675848e-13 | 0.501031066531414 |
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RelatedDrugs for PRKX |
Approved drugs targeting this gene. (DrugBank Version 5.1.0 2018-04-02) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PRKX |
Diseases associated with this gene. (DisGeNet 4.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |