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| Differntial gene expression between RNA A-to-I edited versus non-edited samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Gene summary for ATF7IP |
 Gene summary |
| Gene information | Gene symbol | ATF7IP | Gene ID | 55729 |
| Gene name | activating transcription factor 7 interacting protein | |
| Synonyms | AM|ATF-IP|MCAF|MCAF1|p621 | |
| Cytomap | 12p13.1 | |
| Type of gene | protein-coding | |
| Description | activating transcription factor 7-interacting protein 1ATF-interacting proteinATF7-interacting proteinATFa-associated modulatorMBD1-containing chromatin-associated factor 1 | |
| Modification date | 20200313 | |
| UniProtAcc | Q6VMQ6, | |
| Context |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
| ATF7IP | GO:0006306 | DNA methylation | 12665582 |
| ATF7IP | GO:0045892 | negative regulation of transcription, DNA-templated | 12665582 |
| ATF7IP | GO:0045893 | positive regulation of transcription, DNA-templated | 12665582 |
| ATF7IP | GO:0045898 | regulation of RNA polymerase II transcriptional preinitiation complex assembly | 12665582 |
Top |
RNA A-to-I events for ATF7IP |
| RNA A-to-I editing events in the ROSMAP, MSBB, and Mayo data sets based on Ensembl gene isoform structure. * This pie chart shows the number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA editing frequencies across three data sets. |
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| The number of RNA A-to-I editing events in different types of transcripts (# event, percentage). |
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| RNA A-to-I editing events in AD. |
| ADediting_332651(14369999, +), ADediting_332652(14397005, +), ADediting_332653(14397107, +), ADediting_332655(14420524, +), ADediting_332656(14426565, +), ADediting_332657(14426569, +), ADediting_332658(14426571, +), ADediting_332659(14426572, +), ADediting_332660(14426617, +), ADediting_332661(14426679, +), ADediting_332662(14426715, +), ADediting_332663(14426732, +), ADediting_332664(14426807, +), ADediting_332665(14427424, +), ADediting_332666(14427549, +), ADediting_332667(14427566, +), ADediting_332668(14427626, +), ADediting_332669(14427640, +), ADediting_332670(14427641, +), ADediting_332671(14433417, +), ADediting_332672(14439589, +), ADediting_332673(14442899, +), ADediting_332674(14442900, +), ADediting_332675(14442905, +), ADediting_332676(14442971, +), ADediting_332677(14442973, +), ADediting_332678(14443080, +), ADediting_332679(14443100, +), ADediting_332680(14443105, +), ADediting_332681(14447362, +), ADediting_332682(14447431, +), ADediting_332683(14447543, +), ADediting_332684(14447555, +), ADediting_332686(14453705, +), ADediting_332687(14453725, +), ADediting_332688(14454910, +), ADediting_332689(14454924, +), ADediting_332690(14455048, +), ADediting_332691(14455084, +), ADediting_332692(14455098, +), ADediting_332693(14455106, +), ADediting_332694(14455117, +), ADediting_332707(14498864, +), ADediting_332708(14498895, +), ADediting_332709(14498908, +), ADediting_332710(14498910, +), ADediting_332711(14498911, +), ADediting_332712(14498921, +), ADediting_332713(14498926, +), ADediting_332714(14498927, +), ADediting_332715(14498946, +), ADediting_332716(14498947, +), ADediting_332717(14498950, +), ADediting_332718(14498975, +), ADediting_332719(14498985, +), ADediting_332720(14499178, +), ADediting_332721(14499678, +), ADediting_332722(14499736, +), ADediting_332723(14499744, +), ADediting_332724(14499745, +), ADediting_332725(14499752, +), ADediting_332726(14499765, +), ADediting_332727(14499769, +), ADediting_332728(14499776, +), ADediting_332729(14499794, +), ADediting_332730(14499807, +), ADediting_332731(14499815, +), ADediting_1531830(14370120, +), ADediting_1531831(14377670, +), ADediting_1531833(14426789, +), ADediting_1531834(14427184, +), ADediting_1531835(14439559, +), ADediting_1531836(14447479, +), ADediting_1531837(14455665, +), ADediting_1531838(14499696, +), ADediting_1531839(14499726, +), ADediting_1612764(14376846, +), ADediting_1612765(14377046, +), ADediting_1612766(14381290, +), ADediting_1612768(14426641, +), ADediting_1612769(14439712, +), ADediting_1612770(14441674, +), ADediting_1612771(14442978, +), ADediting_1612772(14443008, +), ADediting_1612773(14443024, +), ADediting_1612774(14443035, +), ADediting_1612775(14443044, +), ADediting_1612776(14445071, +), ADediting_1612777(14445091, +), ADediting_1612778(14445094, +), ADediting_1612779(14445171, +), ADediting_1612780(14445191, +), ADediting_1612781(14446313, +), ADediting_1612782(14447411, +), ADediting_1612783(14447434, +), ADediting_1612784(14447462, +), ADediting_1612785(14455032, +), ADediting_1612786(14455052, +), ADediting_1612787(14455068, +), ADediting_1612788(14474481, +), ADediting_1612789(14474501, +), ADediting_1612790(14474621, +), ADediting_1612791(14474651, +), ADediting_1612792(14476175, +), ADediting_1612793(14476332, +), ADediting_1612796(14499704, +), |
Top |
RNA editing positional annotations for ATF7IP using Annovar |
| Protein coding RNA editing(s). |
| ADeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| ADeditome ID | Position | Variant type |
| ADediting_332651 | chr12_14369999_+ | intronic |
| ADediting_332652 | chr12_14397005_+ | intronic |
| ADediting_332653 | chr12_14397107_+ | intronic |
| ADediting_332655 | chr12_14420524_+ | intronic |
| ADediting_332656 | chr12_14426565_+ | intronic |
| ADediting_332657 | chr12_14426569_+ | intronic |
| ADediting_332658 | chr12_14426571_+ | intronic |
| ADediting_332659 | chr12_14426572_+ | intronic |
| ADediting_332660 | chr12_14426617_+ | intronic |
| ADediting_332661 | chr12_14426679_+ | intronic |
| ADediting_332662 | chr12_14426715_+ | intronic |
| ADediting_332663 | chr12_14426732_+ | intronic |
| ADediting_332664 | chr12_14426807_+ | intronic |
| ADediting_332665 | chr12_14427424_+ | intronic |
| ADediting_332666 | chr12_14427549_+ | intronic |
| ADediting_332667 | chr12_14427566_+ | intronic |
| ADediting_332668 | chr12_14427626_+ | intronic |
| ADediting_332669 | chr12_14427640_+ | intronic |
| ADediting_332670 | chr12_14427641_+ | intronic |
| ADediting_332671 | chr12_14433417_+ | intronic |
| ADediting_332672 | chr12_14439589_+ | intronic |
| ADediting_332673 | chr12_14442899_+ | intronic |
| ADediting_332674 | chr12_14442900_+ | intronic |
| ADediting_332675 | chr12_14442905_+ | intronic |
| ADediting_332676 | chr12_14442971_+ | intronic |
| ADediting_332677 | chr12_14442973_+ | intronic |
| ADediting_332678 | chr12_14443080_+ | intronic |
| ADediting_332679 | chr12_14443100_+ | intronic |
| ADediting_332680 | chr12_14443105_+ | intronic |
| ADediting_332681 | chr12_14447362_+ | intronic |
| ADediting_332682 | chr12_14447431_+ | intronic |
| ADediting_332683 | chr12_14447543_+ | intronic |
| ADediting_332684 | chr12_14447555_+ | intronic |
| ADediting_332686 | chr12_14453705_+ | intronic |
| ADediting_332687 | chr12_14453725_+ | intronic |
| ADediting_332688 | chr12_14454910_+ | intronic |
| ADediting_332689 | chr12_14454924_+ | intronic |
| ADediting_332690 | chr12_14455048_+ | intronic |
| ADediting_332691 | chr12_14455084_+ | intronic |
| ADediting_332692 | chr12_14455098_+ | intronic |
| ADediting_332693 | chr12_14455106_+ | intronic |
| ADediting_332694 | chr12_14455117_+ | intronic |
| ADediting_332707 | chr12_14498864_+ | UTR3 |
| ADediting_332708 | chr12_14498895_+ | UTR3 |
| ADediting_332709 | chr12_14498908_+ | UTR3 |
| ADediting_332710 | chr12_14498910_+ | UTR3 |
| ADediting_332711 | chr12_14498911_+ | UTR3 |
| ADediting_332712 | chr12_14498921_+ | UTR3 |
| ADediting_332713 | chr12_14498926_+ | UTR3 |
| ADediting_332714 | chr12_14498927_+ | UTR3 |
| ADediting_332715 | chr12_14498946_+ | UTR3 |
| ADediting_332716 | chr12_14498947_+ | UTR3 |
| ADediting_332717 | chr12_14498950_+ | UTR3 |
| ADediting_332718 | chr12_14498975_+ | UTR3 |
| ADediting_332719 | chr12_14498985_+ | UTR3 |
| ADediting_332720 | chr12_14499178_+ | UTR3 |
| ADediting_332721 | chr12_14499678_+ | UTR3 |
| ADediting_332722 | chr12_14499736_+ | UTR3 |
| ADediting_332723 | chr12_14499744_+ | UTR3 |
| ADediting_332724 | chr12_14499745_+ | UTR3 |
| ADediting_332725 | chr12_14499752_+ | UTR3 |
| ADediting_332726 | chr12_14499765_+ | UTR3 |
| ADediting_332727 | chr12_14499769_+ | UTR3 |
| ADediting_332728 | chr12_14499776_+ | UTR3 |
| ADediting_332729 | chr12_14499794_+ | UTR3 |
| ADediting_332730 | chr12_14499807_+ | UTR3 |
| ADediting_332731 | chr12_14499815_+ | UTR3 |
| ADediting_1531830 | chr12_14370120_+ | intronic |
| ADediting_1531831 | chr12_14377670_+ | intronic |
| ADediting_1531833 | chr12_14426789_+ | intronic |
| ADediting_1531834 | chr12_14427184_+ | intronic |
| ADediting_1531835 | chr12_14439559_+ | intronic |
| ADediting_1531836 | chr12_14447479_+ | intronic |
| ADediting_1531837 | chr12_14455665_+ | intronic |
| ADediting_1531838 | chr12_14499696_+ | UTR3 |
| ADediting_1531839 | chr12_14499726_+ | UTR3 |
| ADediting_1612764 | chr12_14376846_+ | intronic |
| ADediting_1612765 | chr12_14377046_+ | intronic |
| ADediting_1612766 | chr12_14381290_+ | intronic |
| ADediting_1612768 | chr12_14426641_+ | intronic |
| ADediting_1612769 | chr12_14439712_+ | intronic |
| ADediting_1612770 | chr12_14441674_+ | intronic |
| ADediting_1612771 | chr12_14442978_+ | intronic |
| ADediting_1612772 | chr12_14443008_+ | intronic |
| ADediting_1612773 | chr12_14443024_+ | intronic |
| ADediting_1612774 | chr12_14443035_+ | intronic |
| ADediting_1612775 | chr12_14443044_+ | intronic |
| ADediting_1612776 | chr12_14445071_+ | intronic |
| ADediting_1612777 | chr12_14445091_+ | intronic |
| ADediting_1612778 | chr12_14445094_+ | intronic |
| ADediting_1612779 | chr12_14445171_+ | intronic |
| ADediting_1612780 | chr12_14445191_+ | intronic |
| ADediting_1612781 | chr12_14446313_+ | intronic |
| ADediting_1612782 | chr12_14447411_+ | intronic |
| ADediting_1612783 | chr12_14447434_+ | intronic |
| ADediting_1612784 | chr12_14447462_+ | intronic |
| ADediting_1612785 | chr12_14455032_+ | intronic |
| ADediting_1612786 | chr12_14455052_+ | intronic |
| ADediting_1612787 | chr12_14455068_+ | intronic |
| ADediting_1612788 | chr12_14474481_+ | intronic |
| ADediting_1612789 | chr12_14474501_+ | intronic |
| ADediting_1612790 | chr12_14474621_+ | intronic |
| ADediting_1612791 | chr12_14474651_+ | intronic |
| ADediting_1612792 | chr12_14476175_+ | intronic |
| ADediting_1612793 | chr12_14476332_+ | intronic |
| ADediting_1612796 | chr12_14499704_+ | UTR3 |
| Repat-regional RNA editing(s). |
| ADeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| ADediting_332651 | chr12_14369999_+ | SINE | Alu | Name=AluSp |
| ADediting_332652 | chr12_14397005_+ | SINE | Alu | Name=AluSq2 |
| ADediting_332653 | chr12_14397107_+ | SINE | Alu | Name=AluSq2 |
| ADediting_332655 | chr12_14420524_+ | SINE | Alu | Name=AluY |
| ADediting_332656 | chr12_14426565_+ | SINE | Alu | Name=AluJb |
| ADediting_332657 | chr12_14426569_+ | SINE | Alu | Name=AluJb |
| ADediting_332658 | chr12_14426571_+ | SINE | Alu | Name=AluJb |
| ADediting_332659 | chr12_14426572_+ | SINE | Alu | Name=AluJb |
| ADediting_332660 | chr12_14426617_+ | SINE | Alu | Name=AluJb |
| ADediting_332661 | chr12_14426679_+ | SINE | Alu | Name=AluJb |
| ADediting_332662 | chr12_14426715_+ | SINE | Alu | Name=AluJb |
| ADediting_332663 | chr12_14426732_+ | SINE | Alu | Name=AluJb |
| ADediting_332664 | chr12_14426807_+ | SINE | Alu | Name=AluJb |
| ADediting_332665 | chr12_14427424_+ | SINE | Alu | Name=AluSg |
| ADediting_332666 | chr12_14427549_+ | SINE | Alu | Name=AluSg |
| ADediting_332667 | chr12_14427566_+ | SINE | Alu | Name=AluSg |
| ADediting_332668 | chr12_14427626_+ | SINE | Alu | Name=AluSg |
| ADediting_332669 | chr12_14427640_+ | SINE | Alu | Name=AluSg |
| ADediting_332670 | chr12_14427641_+ | SINE | Alu | Name=AluSg |
| ADediting_332671 | chr12_14433417_+ | SINE | Alu | Name=AluSc |
| ADediting_332672 | chr12_14439589_+ | SINE | Alu | Name=AluSz6 |
| ADediting_332673 | chr12_14442899_+ | SINE | Alu | Name=AluSz |
| ADediting_332674 | chr12_14442900_+ | SINE | Alu | Name=AluSz |
| ADediting_332675 | chr12_14442905_+ | SINE | Alu | Name=AluSz |
| ADediting_332676 | chr12_14442971_+ | SINE | Alu | Name=AluSz |
| ADediting_332677 | chr12_14442973_+ | SINE | Alu | Name=AluSz |
| ADediting_332678 | chr12_14443080_+ | SINE | Alu | Name=AluSz |
| ADediting_332679 | chr12_14443100_+ | SINE | Alu | Name=AluSz |
| ADediting_332680 | chr12_14443105_+ | SINE | Alu | Name=AluSz |
| ADediting_332681 | chr12_14447362_+ | SINE | Alu | Name=AluSx1 |
| ADediting_332682 | chr12_14447431_+ | SINE | Alu | Name=AluSx1 |
| ADediting_332683 | chr12_14447543_+ | SINE | Alu | Name=AluSx1 |
| ADediting_332684 | chr12_14447555_+ | SINE | Alu | Name=AluSx1 |
| ADediting_332686 | chr12_14453705_+ | SINE | Alu | Name=AluSq2 |
| ADediting_332687 | chr12_14453725_+ | SINE | Alu | Name=AluSq2 |
| ADediting_332688 | chr12_14454910_+ | SINE | Alu | Name=AluSx1 |
| ADediting_332689 | chr12_14454924_+ | SINE | Alu | Name=AluSx1 |
| ADediting_332690 | chr12_14455048_+ | SINE | Alu | Name=AluSx1 |
| ADediting_332691 | chr12_14455084_+ | SINE | Alu | Name=AluSx1 |
| ADediting_332692 | chr12_14455098_+ | SINE | Alu | Name=AluSx1 |
| ADediting_332693 | chr12_14455106_+ | SINE | Alu | Name=AluSx1 |
| ADediting_332694 | chr12_14455117_+ | SINE | Alu | Name=AluSx1 |
| ADediting_332707 | chr12_14498864_+ | SINE | Alu | Name=AluSq |
| ADediting_332708 | chr12_14498895_+ | SINE | Alu | Name=AluSq |
| ADediting_332709 | chr12_14498908_+ | SINE | Alu | Name=AluSq |
| ADediting_332710 | chr12_14498910_+ | SINE | Alu | Name=AluSq |
| ADediting_332711 | chr12_14498911_+ | SINE | Alu | Name=AluSq |
| ADediting_332712 | chr12_14498921_+ | SINE | Alu | Name=AluSq |
| ADediting_332713 | chr12_14498926_+ | SINE | Alu | Name=AluSq |
| ADediting_332714 | chr12_14498927_+ | SINE | Alu | Name=AluSq |
| ADediting_332715 | chr12_14498946_+ | SINE | Alu | Name=AluSq |
| ADediting_332716 | chr12_14498947_+ | SINE | Alu | Name=AluSq |
| ADediting_332717 | chr12_14498950_+ | SINE | Alu | Name=AluSq |
| ADediting_332718 | chr12_14498975_+ | SINE | Alu | Name=AluSq |
| ADediting_332719 | chr12_14498985_+ | SINE | Alu | Name=AluSq |
| ADediting_332721 | chr12_14499678_+ | SINE | Alu | Name=AluSq2 |
| ADediting_332722 | chr12_14499736_+ | SINE | Alu | Name=AluSq2 |
| ADediting_332723 | chr12_14499744_+ | SINE | Alu | Name=AluSq2 |
| ADediting_332724 | chr12_14499745_+ | SINE | Alu | Name=AluSq2 |
| ADediting_332725 | chr12_14499752_+ | SINE | Alu | Name=AluSq2 |
| ADediting_332726 | chr12_14499765_+ | SINE | Alu | Name=AluSq2 |
| ADediting_332727 | chr12_14499769_+ | SINE | Alu | Name=AluSq2 |
| ADediting_332728 | chr12_14499776_+ | SINE | Alu | Name=AluSq2 |
| ADediting_332729 | chr12_14499794_+ | SINE | Alu | Name=AluSq2 |
| ADediting_332730 | chr12_14499807_+ | SINE | Alu | Name=AluSq2 |
| ADediting_332731 | chr12_14499815_+ | SINE | Alu | Name=AluSq2 |
| ADediting_1531830 | chr12_14370120_+ | SINE | Alu | Name=AluSp |
| ADediting_1531831 | chr12_14377670_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1531833 | chr12_14426789_+ | SINE | Alu | Name=AluJb |
| ADediting_1531834 | chr12_14427184_+ | SINE | Alu | Name=AluJr |
| ADediting_1531835 | chr12_14439559_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1531836 | chr12_14447479_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1531837 | chr12_14455665_+ | SINE | Alu | Name=AluJo |
| ADediting_1531838 | chr12_14499696_+ | SINE | Alu | Name=AluSq2 |
| ADediting_1531839 | chr12_14499726_+ | SINE | Alu | Name=AluSq2 |
| ADediting_1612764 | chr12_14376846_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1612765 | chr12_14377046_+ | SINE | Alu | Name=AluSz |
| ADediting_1612766 | chr12_14381290_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1612768 | chr12_14426641_+ | SINE | Alu | Name=AluJb |
| ADediting_1612769 | chr12_14439712_+ | SINE | Alu | Name=AluSz6 |
| ADediting_1612770 | chr12_14441674_+ | SINE | Alu | Name=AluY |
| ADediting_1612771 | chr12_14442978_+ | SINE | Alu | Name=AluSz |
| ADediting_1612772 | chr12_14443008_+ | SINE | Alu | Name=AluSz |
| ADediting_1612773 | chr12_14443024_+ | SINE | Alu | Name=AluSz |
| ADediting_1612774 | chr12_14443035_+ | SINE | Alu | Name=AluSz |
| ADediting_1612775 | chr12_14443044_+ | SINE | Alu | Name=AluSz |
| ADediting_1612776 | chr12_14445071_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1612777 | chr12_14445091_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1612778 | chr12_14445094_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1612779 | chr12_14445171_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1612780 | chr12_14445191_+ | SINE | Alu | Name=AluSx3 |
| ADediting_1612781 | chr12_14446313_+ | SINE | Alu | Name=AluSx |
| ADediting_1612782 | chr12_14447411_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1612783 | chr12_14447434_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1612784 | chr12_14447462_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1612785 | chr12_14455032_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1612786 | chr12_14455052_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1612787 | chr12_14455068_+ | SINE | Alu | Name=AluSx1 |
| ADediting_1612788 | chr12_14474481_+ | SINE | Alu | Name=AluSx4 |
| ADediting_1612789 | chr12_14474501_+ | SINE | Alu | Name=AluSx4 |
| ADediting_1612790 | chr12_14474621_+ | SINE | Alu | Name=AluSx4 |
| ADediting_1612791 | chr12_14474651_+ | SINE | Alu | Name=AluSx4 |
| ADediting_1612792 | chr12_14476175_+ | SINE | Alu | Name=AluJb |
| ADediting_1612793 | chr12_14476332_+ | SINE | Alu | Name=AluJb |
| ADediting_1612796 | chr12_14499704_+ | SINE | Alu | Name=AluSq2 |
Top |
RNA A-to-I editing events in the alternative splicing sites for ATF7IP |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | ADeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential pencent of spliced in (PSI) between RNA A-to-I edited and non-edited samples |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for ATF7IP |
| Distribution of the averaged gene expression in AD and control with or without RNA A-to-I editing event. * The grey color means N/A. |
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| Distribution of the averaged gene isoform expression in AD and control with or without RNA A-to-I editing event. |
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| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| - Differentially expressed transcript between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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| ADeditome ID | Chr | Positoing | Skipped exon | ENSG | ENSTs |